- Comp-neuro - lists.cnsorg.org

Late-breaking poster abstract submission for the 33rd Annual Computational Neuroscience Meeting CNS*2024

by Rubchinsky, Leonid L

Dear Colleagues, We are inviting abstracts for the late-breaking poster-only presentations at the 33rd Annual Computational Neuroscience Meeting CNS*2024. The meeting will be held on July 20-24 in Natal, Brazil. The deadline to submit a late-breaking poster abstracts is June 18. Note that one of the authors must register as a sponsoring author for the main meeting before abstract submission. Please follow the formatting guidelines on the submission site. Registration: https://ocns.memberclicks.net/cns-2024-registration Abstract submission: https://www.cnsorg.org/cns-2024-abstract-submission CNS*2024 information: https://www.cnsorg.org/cns-2024 We would also like to let you know that we were advised that earlier Brazilian government's plan to require visas for for US, Canadian, and Australian citizens has been delayed until 2025. Citizens of these these and many other countries do not need to obtain a visa in advance of their travel (see https://www.cnsorg.org/cns-2024-travel-and-visa-information) With kind regards, Leonid Rubchinsky OCNS Vice President, on behalf of the OCNS Board of Directors *********************** Leonid Rubchinsky, PhD Professor Department of Mathematical Sciences, Indiana University Purdue University Indianapolis Stark Neurosciences Research Institute, Indiana University School of Medicine 402 N. Blackford St Indianapolis, IN 46202-3216 lrubchin(a)iu.edu http://www.math.iupui.edu/~lrubchin ***********************

May 31, 2024

Postdoctoral Research Position - University of Las Palmas de Gran Canaria, Spain

by Carmen Paz Suárez Araujo

Postdoctoral Research Position Institute: Institute of Cybernetic, Enterprise and Society (IUCES). University of Las Palmas de Gran Canaria (ULPGC) City: Las Palmas de Gran Canari, Canary Islands, Spain Closing Date: 7 June 2024 Dear Colleagues, The Research Division of Computational Neuroscience (COMCIENCIA) belonging to the IUCES has a PostDoc position in one of our Projects. We are recruiting a team of outstanding researchers from Artificial Neural Networks, Computational Neuroscience, Clinical Decision Support Systems using Intelligent Computing and AI/ML, to work with us on achieving the project’s ambitious objectives. The main tasks will be concerning: - Development and supervision of research in the area of "Artificial and Biological Neural Networks: Design of New Architectures". - Supervision and development of research in the field of Intelligent Computing Systems and their application for Designing and Developing Clinical Decision Support Systems for diagnosis and prognosis of neurocognitive pathologies associated with aging (dementias), infectious diseases (COVID) necessarily adjusted to the project in which he/she is hired. - Scientific dissemination of the research developed. For further information and to apply, please see: https://euraxess.ec.europa.eu/jobs/240289 If you've any question, please you don't hesitate to contact with Prof. Carmen Paz Suárez Araujo Best Regards Carmen Paz Suárez Araujo Catedrática de Universidad/Full Professor. Directora de la División de Investigación de Neurociencia Computacional. Directora de la Catedra de Neurociencia Computacional, Marie Curie Instituto de Cibernética, Empresa y Sociedad (IUCES) Universidad de Las Palmas de Gran Canaria tel. +34928458725; +34629822298 carmenpaz.suarez(a)ulpgc.es www.ulpgc.es ORCID 0000-0002-8826-0899 EDIFICIO DE INFORMÁTICA, OFFICE 2-5 CAMPUS UNIVERSITARIO DE TAFIRA S/N 35017, LAS PALMAS DE GC [Universidad de Las Palmas de Gran Canaria]

May 30, 2024

Postdoc + PhD positions in ERC funded project ACTOR

by Constantin Rothkopf

The lab of Constantin Rothkopf (https://www.pip.tu-darmstadt.de/) at the Centre for Cognitive Science @ TU Darmstadt is looking for PhD and Postdoc applicants interested in becoming part of the ERC project ACTOR. While some positions are focused on human behavioral experiments others are more focused on computational work. The goal of this project is to use both human behavioral experiments and computational modeling to understand human sequential behavior in tasks including continuous psychophysics, visual behaviors such as gaze selection and blinking, sensorimotor control involving intuitive physics, navigation, and food preparation in the framework of sequential decision making/planning/optimal control/RL. Our group is part of the Centre for Cognitive Science and the AI Center at TU Darmstadt, which are home to an internationally outstanding group of PIs and junior researchers working in the areas of computational cognitive science, machine learning, and artificial intelligence. We are part of several research consortia and engage in multiple fruitful research collaborations. The lab has state of the art equipment for eye and body tracking, VR, naturalistic task monitoring, psychophysics and access to one of the most generous computing infrastructures in Germany. We foster an inclusive, supportive, and collaborative environment driven by scientific curiosity and mutual respect and we maintain close interactions with other research groups including joint lab meetings. While some of the positions are geared towards more behavioral work others are strongly focused on computational modeling. Applicants may therefore have a background in computer science, cognitive science, neuroscience, psychology, engineering, or related fields. Don’t hesitate to contact me for more details. Please send the official application to the dean of the department of human sciences dekanat(a)humanw.tu-darmstadt.de including a CV, a two page cover letter explaining your research interests, motivation, and your long-term career goals, and contact information for 2-3 references in a single pdf file. The code for the PhD position is “167” and for the Postdoc position “168”. Applications will be reviewed on a continuing basis. The Frankfurt-Darmstadt metropolitan area is located in the heart of Europe and is one of the most international regions in Germany with a diverse community and rich culture repeatedly earning high rankings in worldwide surveys of quality of living. Frankfurt recently reached 7th place worldwide in a ranking of attractiveness by the Economist and Darmstadt has repeatedly ranked among the top innovation driving cities in Germany. Finally, to get a better idea about some of our work, here some publications by our group: - Tatai, F., Straub, D., Rothkopf, C. A. (2023). People use Newtonian physics in intuitive sensorimotor decisions under risk. In Proceedings of the Annual Meeting of the Cognitive Science Society (Vol. 45, No. 45). https://escholarship.org/content/qt0rg3z8f6/qt0rg3z8f6_noSplash_c1cad85c077… - Kadner, F., Willkomm, H., Ibs, I., & Rothkopf, C. (2023). Finding your Way Out: Planning Strategies in Human Maze-Solving Behavior. In Proceedings of the Annual Meeting of the Cognitive Science Society (Vol. 45, No. 45). https://escholarship.org/content/qt94t1t8kw/qt94t1t8kw_noSplash_3a5e798a923… - Kessler, F., Frankenstein, J., Rothkopf, C. A. A dynamic Bayesian actor model explains endpoint variability in homing tasks, bioRxiv, 2022. https://www.biorxiv.org/content/10.1101/2022.11.09.515854v1 - Straub, D., & Rothkopf, C. A. (2022). Putting perception into action with inverse optimal control for continuous psychophysics, eLife 11, e76635. https://elifesciences.org/articles/76635 - Schultheis, M., Straub, D., & Rothkopf, C. A. (2021). Inverse optimal control adapted to the noise characteristics of the human sensorimotor system. Advances in Neural Information Processing Systems, 34, 9429-9442. https://proceedings.neurips.cc/paper/2021/hash/4e55139e019a58e0084f194f758f… - Neupärtl, N., Tatai, F., & Rothkopf, C. A. (2020). Intuitive physical reasoning about objects’ masses transfers to a visuomotor decision task consistent with Newtonian physics. PLoS computational biology, 16(10), e1007730. https://doi.org/10.1371/journal.pcbi.1007730 - Hoppe, D., & Rothkopf, C. A. (2019). Multi-step planning of eye movements in visual search. Scientific reports, 9(1), 1-12. https://doi.org/10.1038/s41598-018-37536-0 - Hoppe, D., & Rothkopf, C. A. (2016). Learning rational temporal eye movement strategies. Proceedings of the National Academy of Sciences, 113(29), 8332-8337. https://doi.org/10.1073/pnas.1601305113 All the best, Constantin Rothkopf https://www.pip.tu-darmstadt.de/ http://www.cogsci.tu-darmstadt.de/ https://hessian.ai/

May 30, 2024

Postdoctoral Research Fellow - University of Stirling, UK

by Elena Gheorghiu

Postdoctoral Research Fellow Department: Psychology, University of Stirling, Scotland, United Kingdom Closing Date: 10 June 2024 Duration: fixed term 27 months Salary: Grade 7 (£37,099 - £44,263 p.a.) A cross-disciplinary team of researchers from the Universities of Stirling, York, Cardiff, Manchester, and Southampton are working together on an EPSRC-funded project, Edgy Organism, to develop a novel end-to-end neuromorphic design approach drawing inspiration from how data is processed and represented in the brain and build an efficient hardware architecture based on spiking neural networks. The project aims to develop novel computing solutions, that can autonomously and reliably detect illegal or harmful activities in crowded public spaces, with minimum intrusion of personal space and privacy. We are recruiting a team of outstanding researchers from Visual Neuroscience, Psychology, Edge Computing, AI/ML, and Neuromorphic Engineering, to work with us on achieving Edgy Organism project’s ambitious objectives. As part of this project, Psychology, Faculty of Natural Sciences, University of Stirling is offering a fixed term (27 months) full-time Postdoctoral Research Fellow position to work with Dr Elena Gheorghiu and the cross-disciplinary team of researchers. Candidates should have a PhD, or equivalent research experience, in Computer Vision/ Computer Science, Visual Neuroscience, Psychology, Physics, Electronic Engineering, Mathematics, or similar technical area and possess specialist knowledge in computer vision/ image processing/ object detection and tracking, and machine learning to work with established software/ research programmes. For further information and to apply, please see: https://www.stir.ac.uk/about/work-at-stirling/list/details/?jobId=4051&jobT… Informal enquiries can be made to Dr Elena Gheorghiu, elena.gheorghiu(a)stir.ac.uk<mailto:elena.gheorghiu@stir.ac.uk> --------------------------------------------------------- Dr Elena Gheorghiu University of Stirling, Faculty of Natural Sciences Department of Psychology, Cottrell building Stirling, FK9 4LA, Scotland, UK Tel: +44 (0) 1786 467649 email: elena.gheorghiu(a)stir.ac.uk<mailto:elena.gheorghiu@stir.ac.uk> https://www.stir.ac.uk/people/257378 ________________________________ Scotland’s University for Sporting Excellence The University of Stirling is a charity registered in Scotland, number SC 011159

May 30, 2024

Postdoctoral position on modelling C. elegans for OpenWorm project at University College London

by Padraig Gleeson

- Apologies for cross postings - Applications are open now for a 3 year postdoctoral position (Research Fellow / Senior Research Fellow) at University College London in the lab of Padraig Gleeson (https://openneuroai.org) The successful applicant will contribute to the goals of the OpenWorm project, to create a cell by cell model of the nematode C. elegans incorporating its full neuronal network and a 3D body/environment simulation (https://openworm.org) The role will involve contributing to existing and creating new software packages which facilitate the goals of the OpenWorm project. It will also involve carrying out research into the physiology, anatomy and behaviour of C. elegans, to ensure the simulations are biologically realistic. Code will be open source from the start and active interaction with the community of researchers in this area will be required. The ideal candidate will have a PhD in neuroscience or a related field, and experience in developing open source tools for investigating (neuro)biological function, a publication record demonstrating the use of such tools in original scientific research, and an active interest in making their research accessible to the wider community. For appointment to Grade 8 (Senior Research Fellow), the candidate will have substantial postdoctoral experience, a strong publication track record in this area, evidence of the ability to sustain independent research, and an established reputation in their field as a proponent of open science. UCL is Europe's research powerhouse in neuroscience, with more than twice as many publications and citations as any other European institution, based right in the heart of London. It is one of the best international environments to carry out neuroscience research. Please contact p.gleeson(a)ucl.ac.uk for more details or questions related to the role. The position is funded for 3 years as part of an EPSRC Open Fellowship grant. The closing date for applications is 19th June 2024. Apply here <https://www.ucl.ac.uk/work-at-ucl/search-ucl-jobs/details?jobId=23333>, including a cover letter stating why you are the ideal candidate for the role. ----------------------------------------------------- Padraig Gleeson Room 321, Anatomy Building Department of Neuroscience, Physiology & Pharmacology University College London Gower Street London WC1E 6BT United Kingdom +44 207 679 3214 p.gleeson(a)ucl.ac.uk -----------------------------------------------------

May 30, 2024

Information theory workshop at CNS*2024 -- call for contributed talks

by Joseph Lizier

Dear all, We are pleased to announce that the Workshop on Methods of Information Theory in Computational Neuroscience<https://bit.ly/cns2024itw> will be held once again at the 33rd Annual Computational Neuroscience Meeting (CNS*2024<https://www.cnsorg.org/cns-2024> conference), in Natal, Brazil. The workshop will be held during sessions over the final day of the main conference, July 24, 2024. Our confirmed speakers so far include the following: * Patricio Orio, University of Valparaíso, Chile * Marilyn Gatica, Northeastern University London, UK * ... more TBA! We would like to call for contributions<https://bit.ly/cns2024itw> of talks. If you are interested in contributing a talk, please send a title and abstract to Marilyn Gatica (marilyn.gatica(a)nulondon.ac.uk<mailto:marilyn.gatica@nulondon.ac.uk>) and Joseph Lizier (joseph.lizier(a)sydney.edu.au<mailto:joseph.lizier@sydney.edu.au>). Earlier submissions and those from female/minority speakers will be prioritised. Please pay attention to the registration for CNS*2024 (deadlines and fees) as workshop registration at least is required for attendance, and see our website https://bit.ly/cns2024itw for more details. We hope you will join us there! Organising Committee: Marilyn Gatica (chair) Joseph Lizier (co-chair) Abdullah Makkeh Michael Wibral Pedro Mediano

May 30, 2024

Open PhD position - Brain-inspired computing and Spiking Neural Networks

by Robert Legenstein

The Lab of Robert Legenstein at Graz University of Technology (Austria) https://www.tugraz.at/institute/igi/people/prof-legenstein/ is offering a funded PhD position (Univ. Assistant) in the areas Spiking Neural Networks/Machine Learning/Brain Models/Neuromorphic Hardware. A background in Machine Learning, Computer Science, or Mathematics is desirable, as well as evidence for excellent prior performance as a student. For details and application portal, see https://jobs.tugraz.at/en/jobs/c979f4bb-8292-a539-ff62-6627a4de2995 -- Dr. Robert Legenstein Univ.-Professor Institute of Theoretical Computer Science Graz University of Technology Inffeldgasse 16b/I, 8010 Graz, Austria http://www.igi.tugraz.at/legi/ Follow @CompLegenstein on Twitter. ++43/316/873-5824 ----------------------------------

May 28, 2024

Last week to register for free for the Basque ASTROTECH Computational Neuroscience Meeting (Bilbao, June 4-6, 2024)

by De Pitta, Maurizio

Dear Colleagues, Please share and disseminate among your networks. The Basque ASTROTECH Computational Neuroscience Meeting is happening next week (June 4–6, 2024) at the Basque Center for Applied Mathematics (BCAM) in Bilbao, Spain. The meeting is in person only. Attendance is free, but registration is required due to limited seating. Please register here: https://www.bcamath.org/events/ba-cnm-astrotech/en/registration/ The Basque ASTROTECH Computational Neuroscience Meeting presents state-of-the-art neural and glial data analysis and modeling research by leading neurotech researchers based in the Basque Country (Spain). The Basque ASTROTECH Computational Neuroscience Meeting is sponsored by the H2020 ASTROTECH European Training Network and is an excellent opportunity for young researchers and professionals in the Basque Country, Spain, and internationally to learn about some of the latest advancements in neuron-glial paradigms of brain function at the interface of computational neuroscience, machine learning, and neurotech. Attendance at the meeting is free, but pre-registration is required due to limited seating. For more information: Meeting Website: https://sites.google.com/view/basque-astrotech-cns-workshop Registration Website: https://www.bcamath.org/events/ba-cnm-astrotech/en/registration/ I look forward to meeting you in Bilbao next week. Maurizio De Pitta /////////////////////////////////////////////////////////////////////////////////////////////// The Basque ASTROTECH Computational Neuroscience Meeting Basque Center for Applied Mathematics (BCAM), Bilbao, Spain June 4–6, 2024. /////////////////////////////////////////////////////////////////////////////////////////////// ***************** Day 1 (June 4, 2024) ***************** MORNING SYMPOSIUM: Applied And Functional ModellingMultiscale functional and structural brain networks in health and disease Jesus Cortes (BioCruces Hospital Clinic) Multiscale functional and structural brain networks in health and disease Craig Richter (BCBL–Basque Center On Cognition, Brain and Language) Discovering functional networks using coupled cortical oscillations Paolo Bonifazi (BioCruces Hospital Clinic) Linking hubs, embryonic neurogenesis, transcriptomic, and diseases in human brain networks Maurizio De Pitta (BCAM–Basque Center for Applied Mathematics and the Krembil Research Institute) Neuron-Glial Circuits Across the Cognitive Spectrum AFTERNOON LAB. Modeling Neuron-Glial Interactions: From Tripartite-Synapses to Neuron-Glial Networks. Curator: Maurizio De Pitta (BCAM/Krembil) ***************** Day 2 (June 5, 2024) ***************** MORNING SYMPOSIUM: The Attractor Framework in Computational Neuroscience. Miguel Aguilera (BCAM) Nonequilibrium associative memories in neuroscience and machine learning Daniele De Martino (Biofizika Institute) Feedback Ising models neural networks dynamics Dmitry Sinelshchikov (Biofizika Institute and CSIC-UPV/EHU) Nonlinear dynamics in small groups of Hindmarsh-Rose neurons Gorka Zamora-Lopez, Pompeu Fabra University (UPF) Emergence of modular and hierarchical neural networks driven by learning of external stimuli AFTERNOON LAB. Glial Functional Readouts: Hodgkin-Huxley models and their extension to Glial Calcium Modeling. Curator: Maurizio De Pitta (BCAM/Krembil) ***************** Day 3 (June 6, 2024) ***************** MORNING SYMPOSIUM. Multi-scale Tools to Model the Brain Christophe Bernard (INSERM and Aix-Marseille University) Digital twin technology to better understand and treat the brain Romina Baila (CODEMART) The Virtual Brain /1: Architectural view over a modeling tool for full brain simulation The Virtual Brain /2: How to Harness The Virtual Brain Capability Ignacio Arganda-Carreras (University of the Basque Country, DIPC, and Biofisika Institute) BiaPy: Bioimage analysis workflow for all audiences AFTERNOON LAB. Physics of the Neuron-Glia-Vascular Tissue. Curator: Michelangelo Volpi (BCAM) ----- Maurizio DE PITTA Principal Investigator Neuron-Glia Interactions Lab (NGILab) Krembil Research Institute, 4KD-509 60 Leonard Ave, Toronto, ON M5T 0S8, CA +1.416.603.5800 ext. 3290 This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. 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May 28, 2024

Fwd: Fully funded PhD position in Computational Neuroscience at TU Graz, Austria

by Kerstin Lenk

Hello, We have a *fully funded PhD position in Computational Neuroscience at TU Graz*, Austria, available. The project is in collaboration with the University of Regensburg, Germany. *Period:* October 1st, 2024 – September 30th, 2027 (3 years) *Supervisor: *Kerstin Lenk, Institute of Neural Engineering, TU Graz, Austria *Keywords: **Astrocytes; Blood-Brain Barrier; Endothelial Cells; Major Depressive Disorder; Computational Modeling* *Team:* The Computational Neuroscience lab led by Dr. Kerstin Lenk in the Institute of Neural Engineering ( https://www.tugraz.at/institute/ine/research/team-lenk) at Graz University of Technology (TU Graz) is looking for a creative and enthusiastic PhD student to join the lab! Our research is focused on the computational neuroscience of astrocytes. Broadly, we study how astrocytes interact with neurons and other glial cells. We are looking for a PhD student who is interested in developing a computational model of the BBB in the following project: *Project Description:* Interactions among astrocytes and endothelial cells (EC) forming blood vessels are essential to building a properly functional blood-brain barrier (BBB). Astrocyte-specific signaling molecules modulate tight junctions (TJ) between EC, thereby controlling BBB sealing properties and, thus, the transendothelial blood-brain trafficking of various substances. Any disruption in these events may lead to the onset of brain disorders. Indeed, an impaired morphology of astrocytes and reduced TJ protein expression characterizes the leaky BBB in postmortem brains of major depressive disorder (MDD) patients. Epidemiological data also revealed sex differences in MDD prevalence, with women twice as affected as men. Intriguingly, the disruption of the BBB in female mice induces depression-like behaviors. Thus, there is a high need to investigate sex-dependent cellular and molecular mechanisms that link a leaky BBB with the etiopathogenesis of MDD to identify alternative disease trajectories, which might be targeted by personalized treatments. The project includes experimental and theoretical work, which is highly interconnected, and we will gain much more insights by combining *in vitro*, *in vivo,* and *in silico* studies. The project is funded by FWF (Austrian Science Fund) under the scheme “Weave” (International Projects) and is in collaboration with Dr. Barbara Di Benedetto at the University of Regensburg, Germany. *Candidate:* The candidate should be willing to work on a multidisciplinary project that combines computational modeling and *in vitro*/ *in vivo* experiments in neurosciences. They should have a good level of English, very good mathematical and programming skills, and an interest in neurobiology. *Application*: Please send your application to *kerstin.lenk(a)tugraz.at <kerstin.lenk(a)tugraz.at>* as a single PDF file, including a CV and the contact details of two academic references, *before July 6th, 2024*. Informal inquiries are welcome. -- Ass. Prof. Dr. rer. nat. Kerstin Lenk (she/her) Institute of Neural Engineering Graz University of Technology Stremayrgasse 16/4 8010 Graz Tel.: +43-316-873-30712https://www.tugraz.at/institute/ine/research/team-lenk/ twitter@astrocytenet

May 24, 2024

PhD position in neonatal neuroimaging

by Manuel Blesa Cábez

We have a 3’5 years PhD position at the University of Edinburgh in neonatal neuroimaging! The project will investigate the relationship between the neonatal structural connectome and the immune dysregulation in preterm infants. For full details: Elucidating the relationship between the neonatal cerebral connectome and immune dysregulation in preterm infants at University of Edinburgh on FindAPhD.com <https://www.findaphd.com/phds/project/elucidating-the-relationship-between-…> The project will be supervised by Prof James Boardman, Dr Manuel Blesa Cábez (myself) and Prof Riccardo Marioni. The University of Edinburgh is one of the world’s top universities, consistently ranked in the world top 50 and placed 22nd in the 2024 QS World University Rankings. It has an international reputation for innovative research across a wide range of disciplines. The salary is £19,237 per year and the application is open worldwide. Closing date 6 of June! For any informal queries, please don’t hesitate to contact me: manuel.blesa(a)ed.ac.uk

May 24, 2024