May 2022 - Comp-neuro - lists.cnsorg.org

CNS*2022 satellite tutorials: free online sessions: June 27--July 1

by Ankur Sinha

Dear all, Apologies for the cross posts. https://ocns.github.io/SoftwareWG/pages/software-wg-satellite-tutorials-at-… The INCF/OCNS Software working group is organising 5 days of free online satellite tutorials ahead of the CNS*2022 conference. These tutorials will run from June 27--July 1 and feature sessions on: - Arbor - Brian2 - Introduction to containers - EBRAINS - GeNN - Keras/TensorFlow - LFPy - MOOSE - Neo + Elephant - NEST - NetPyNE - NeuroLib - NeuroML - NEURON - OSBv2 - RateML More information on the schedule and (free) registration will be published in the next week or so. Please do mark your calendars and spread to word to your colleagues, students, and anyone else who these may interest. For more information on the INCF/OCNS Software working group and how you can join our community, please visit our website: https://ocns.github.io/SoftwareWG/ -- Thanks, Regards, Ankur Sinha (He / Him / His) | https://ankursinha.in Research Fellow at the Silver Lab, University College London | http://silverlab.org/ Free/Open source community volunteer at the NeuroFedora project | https://neuro.fedoraproject.org Time zone: Europe/London

May 31, 2022

Job Openings: Professor / Associate Professor / Assistant Professor (Computer Science) (3 vacancies) at Hong Kong Baptist University

by COMP HKBU

The Department of Computer Science at Hong Kong Baptist University offers BSc, MSc, MPhil, and PhD programmes, and is now seeking outstanding applicants for the following faculty positions on tenure-track. *Professor / Associate Professor / Assistant Professor (Computer Science) (3 vacancies) (PR0395/21-22)* The appointees will perform high-impact research, teach and supervise students at undergraduate and postgraduate levels, and contribute to professional and institutional services. Collaboration with other faculty members in research and teaching is also expected. They will be encouraged to collaborate with colleagues within the Department to contribute to two special thematic applications including (a) health informatics and (b) security and privacy-aware computing, and to pursue new strategic research initiatives under the Department/Faculty/University. Applicants should possess a PhD degree in Computer Science, Computer Engineering, Information Systems, or a related field, and sufficiently demonstrate abilities to conduct high quality research in areas including but not limited to: Internet of things, Cyber-security, High-performance computing, Big data analytics, Art technologies and Financial technologies. Applicants should also show strong commitment to undergraduate and postgraduate teaching in computer science and/or information systems, possess track record of innovative research and high-impact publications, and be able to bid for and pursue externally-funded research programmes. Initial appointment will be offered on a fixed-term contract of three years. Re-appointment thereafter will be subject to mutual agreement. For enquiries, please contact Professor Jianliang Xu, Head of Department (email: xujl(a)comp.hkbu.edu.hk) More information about the Department can be found at https://www.comp.hkbu.edu.hk. *Rank and salary will be commensurate with qualifications and experience.* *Application Procedure:* Applicants are invited to submit their applications at the HKBU e-Recruitment System (jobs.hkbu.edu.hk) with samples of publications, preferably three best ones out of their most recent publications/works. They should also request two referees to send in confidential letters of reference, with *PR *number (stated above) quoted on the letters, to the Human Resources Office (Email: recruit(a)hkbu.edu.hk) direct. Those who are not invited for interview 4 months after the closing date may consider their applications unsuccessful. All application materials including publication samples, scholarly/creative works will be disposed of after completion of the recruitment exercise. Details of the University’s Personal Information Collection Statement can be found at http://hro.hkbu.edu.hk/pics. The University reserves the right not to make an appointment for the posts advertised, and the appointment will be made according to the terms and conditions applicable at the time of offer. *Closing date: Shortlisting will start immediately until the position is filled.* *URL: *https://www.comp.hkbu.edu.hk/v1/?page=job_vacancies&id=743

May 31, 2022

The Canadian Computational Neuroscience Spotlight is one week away!

by Scott Rich

Dear all, The third edition of the Canadian Computational Neuroscience Spotlight (CCNS) is just one week away. Our speaker list is now finalized, and can be found at ccnsmeeting.ca. The meeting will include keynote addresses from Drs. Viktor Jirsa, Gaute Einevoll, and Cendri Hutcherson, as well as a session on Neuro-AI with talks from Drs. Richard Naud, Milad Lankarany, Blake Richards, and Wilten Nicola. Register for the meeting at https://www.crowdcast.io/e/ccnsv3/register. We will be accepting late submissions for Trainee Talks until Wednesday at noon EDT. Please submit your abstracts at https://forms.gle/Vr1BsUZxjbSn1aFG7 for consideration. Sincerely, Scott Rich (on behalf of the organizing committee)

May 30, 2022

A YouTube playlist of 15 short videos for "A quick introduction to what is known about biological vision experimentally"

by Li Zhaoping

Dear colleagues, I have made this playlist "A quick introduction to what is known about biological vision experimentally" of 15 short video clips, each about 10 minutes long, see http://lizhaoping.org/zhaoping/QuickIntro_BiologicalVision_Playlist.html <https://t.co/Tfpa7epGAE> this is part of my effort for teaching materials for "Understanding vision: theory, models, and data" <http://www.lizhaoping.org/zhaoping/VideoLectures_ForBook.html>. Feedback most welcome, thank you! best Li Zhaoping -- Li Zhaoping, Ph.D. Prof. of Cognitive Science, University of Tuebingen Head of Department of Sensory and Sensorimotor Systems, Max Planck Institute for Biological Cybernetics Author of "Understanding vision: theory, models, and data", Oxford University Press, 2014 www.lizhaoping.org

May 27, 2022

PostDoc position at UCL: MEG and big data smartphone analysis

by Hauser, Tobias

PostDoc position at Max Planck UCL Centre for Computational Psychiatry with Dr Tobias Hauser We are looking for a PostDoc to work on exciting projects analysing already collected MEG and smartphone app data. We are looking for someone with experience in data analysis with behavioural and/or electrophysiological (MEG) data. The postdoc will be working on a MEG dataset of a novel task including a big patient sample. In addition, they will have the opportunity to analyse a large dataset of behavioural and questionnaire data from a smartphone app (www.brainexplorer.net<http://www.brainexplorer.net>). We are looking for someone with computational modelling, machine learning, or advanced neuroimaging data analysis expertise. The person will be based at the Max Planck UCL Centre for Computational Psychiatry and Ageing Research and the Wellcome Centre for Human Neuroimaging, located in Central London. If you have further questions, please contact Tobias Hauser (t.hauser(a)ucl.ac.uk<mailto:t.hauser@ucl.ac.uk>). To read more about the research group, please see https://devcompsy.org/ Job advert here: https://atsv7.wcn.co.uk/search_engine/jobs.cgi?amNvZGU9MTg4NDY5NiZ2dF90ZW1w… Best Tobias -- Play smartphone games and help us understand the brain: www.brainexplorer.net<http://www.brainexplorer.net> Dr Tobias U. Hauser Sir Henry Dale Fellow, Principal Research Fellow Developmental Computational Psychiatry lab Max Planck UCL Centre for Computational Psychiatry & Ageing Research Wellcome Centre for Human Neuroimaging University College London 10-12 Russell Square London WC1B 5EH +44 207 679 5264 (internal: 45264) t.hauser(a)ucl.ac.uk<mailto:t.hauser@ucl.ac.uk> www.tobiasuhauser.com<http://www.tobiasuhauser.com/> www.devcompsy.org<http://www.devcompsy.org/>

May 26, 2022

PhD position offer: Neuro-inspired macroscale model of tCS-induced changes on epileptic networks

by Elif Köksal

*Title*: Neuro-inspired macroscale model of tCS-induced changes on epileptic networks *Context*. Epilepsy refers to a neurological disorder that affects about 1% of the general population. Recent findings indicate that non-invasive brain transcranial current stimulation (tCS) is safe and of therapeutic promise in epilepsy. However, it is not yet indicated as a standard treatment due to major scientific limitations: unknown mechanisms of action, insufficient account for patient-specific factors, poor understanding of short- and long-term effects. The ambition of the GALVANI Project (ERC-SyG 2019; 2020-26) is to transform the care of a large fraction of patients living with drug-resistant epilepsies by solving a fundamental problem: to efficiently target and control large-scale epileptic brain networks with tCS-induced neuromodulatory weak electric fields. *Rationale. *Electrical stimulation (supra-threshold) and neuromodulation (sub-threshold) are two different methods that can be used to alter brain plasticity in order to lower hyperexcitability and subsequently decrease the occurrence of epileptiform events. These events are generated large-scale brain networks involving interconnected distant brain regions characterized by an increase of excitability. In this context, computational models are an efficient way to understand features of epileptiform events recorded in patients, either intracerebrally or from electrodes located on the scalp. In addition, it is an efficient tool to analyze the impact of tCS on the brain and optimize its therapeutic effect. *Objective. *This research focuses on neuromodulation induced by transcranial current stimulation (tCS). The objective of the proposed PhD position is to design a neuro-inspired macroscale model of the brain that will simulate electroencephalographic (EEG) signals under 2 conditions: spontaneous activity and tCS. The model will be able to simulate the activity of epileptogenic networks generating epileptic spikes during interictal periods. It will account for immediate (acute) and lasting (short- or long-term) effects of neuromodulatory weak electric fields, which remain elusive. Simulations will help the design of tCS-based neuromodulation strategies aimed at lowering interictal epileptic spikes. *Methods. *The model will start from previous results of the team (Merlet et al. PlosOne 2013, Bensaid et al. Frontiers in Neuroscience 2019). It will consist of a macroscale network of interconnected (edges) neural populations (nodes) located in the neocortex. Neurophysiological activity of each node will be generated by a neural mass model. The whole model will allow for simulation of normal and epileptic EEG activity (interictal spikes, ictal activity) under 2 conditions: spontaneous and tCS. Simulated signals will be compared to EEG signals recorded in patients under similar conditions. The model will be embedded into an existing software named COALIA developed in Python. tCS induced E-fields will be simulated using SimNibs (to start with) and with tools developed at Neuroelectrics. Optimal parameters reducing epileptic activity will be determined. *Scientific environment. *GALVANI involves three partners: LTSI-Inserm (Rennes), AMU-APHM (Marseille) and Neuroelectrics (Barcelona). It is intended to develop the next generation of brain stimulation solutions. GALVANI can be viewed as a distributed lab (Rennes-Barcelona-Marseille) working under a common policy to ensure coherence of research and intense collaboration and cross-fertilization. Fellows will be co-supervised in a unique, shared environment with exposure to science, technology and clinical experience. *Candidate profile.* The research project is at the interface between biomathematics (neuro-inspired models), biophysics (electric field models), and neuroscience/neurology (epilepsy). The candidate will preferably have some background in dynamical systems, computational neuroscience/systems biology or in electrical engineering, with experience in bio-signal processing and biophysics. Knowledge in electrophysiology and/or EEG analysis would be an asset. The PhD fellow will join a multidisciplinary team including research scientists in biomedical engineering, neurophysiological modeling, bio-physics, signal processing, electrophysiology, neurology. - *Contract*. The position will start on 01/10/2022. The contract is for 3 years with possible extension (3 months). The salary will be defined according to Inserm rules regarding doctoral student remuneration. Deadline for application. 15/07/2022 Contact. Applicants must send a CV and a cover letter to: Fabrice Wendling (DR Inserm, LTSI, France) Email: fabrice.wendling(a)inserm.fr Isabelle Merlet (CR Inserm, LTSI, France) Email: isabelle.merlet(a)inserm.fr Elif Koksal (Post-doc fellow, LTSI, France) Email: elif.koksal-ersoz(a)inserm.fr Pascal Benquet (Prof. Univ-Rennes1) Email: Pascal.Benquet(a)univ-rennes1.fr

May 26, 2022

Postdoc positions in NeuroAI

by Rui Ponte Costa

We are looking for two postdocs to work on deep learning-inspired computational neuroscience at the University of Bristol, United Kingdom. There are a number of exciting topics that you could contribute to: 1. Neuromodulated cortex-wide credit assignment 2. Subcortical facilitation of cortical learning 3. Theories of self-supervised learning in cortical circuits There are also opportunities to collaborate closely with leading cellular, systems and cellular neuroscientists, but also deep learning researchers. Successful candidates should have: - a strong quantitative background - keen interest in neuroscience - obtained (or be close to) a PhD in computational neuroscience, machine learning, physics, mathematics, computer science or similar. - ability to work in a strongly collaborative and interdisciplinary field Please express your interest by sending your cv and a brief statement of research interests to rui.costa(a)bristol.ac.uk<mailto:rui.costa@bristol.ac.uk> More info about our group at: neuralml.github.io<https://neuralml.github.io/> Best wishes, Rui Ponte Costa Lecturer (Assistant Professor) in Computational Neuroscience & Machine Learning Neural and Machine Learning group<https://neuralml.github.io/> Bristol Computational Neuroscience Unit<http://bristolcnu.github.io/>, Intelligent Systems Labs<https://www.bristol.ac.uk/engineering/research/intelligent-systems/> Faculty of Engineering & Bristol Neuroscience, University of Bristol<https://bristol.ac.uk/>, UK

May 26, 2022

Postdoctoral opportunity UTSA-AFRL

by Fidel Santamaria

We are looking for a postdoctoral fellow to computationally and theoretically study the effects of thermal gradients in synaptic plasticity. This is an area of research with potential translational and engineering applications. This is also a unique opportunity for those that want to explore working along the lines of interest of the Air Force Research Laboratories (AFRL). Furthermore, the funds and benefits dedicated for the training of the selected candidate are way better than what you can get in a traditional postdoctoral position. This research is part of a collaboration between the University of Texas at San Antonio, an R1 institution, and the AFRL. To apply please follow the link or look it up https://www.zintellect.com/Opportunity/Details/AFRL-711HPW-2022-0005 more information here https://orise.orau.gov/internships-fellowships/postdocs.html Please note that this position is only open to US citizens. You can also contact Dr Santamaria for more information: fidel.santamaria(a)utsa.edu<mailto:fidel.santamaria@utsa.edu> _______________________________________________________________________________ Fidel Santamaria, PhD Professor Department of Neuroscience, Development, and Regenerative Biology University of Texas at San Antonio www.utsa.edu/SantamariaLab<http://www.utsa.edu/SantamariaLab> Office: BSB 1.03.30 Tel +1(210) 458 6910

May 24, 2022

International Symposium on AI and Brain Science 2022: Call for poster abstracts and registration

by Kenji Doya

We are pleased to announce the International Symposium on AI and Brain Science 2022 on July 4th and 5th at Okinawa Institute of Science and Technology http://www.brain-ai.jp/symposium2022/ as a satellite event for Neuro2022 at Okinawa Convention Center from June 30th to July 3rd. https://neuro2022.jnss.org/en/ The symposium is on-site/online hybrid and we are calling for on-site poster presentations by June 1st. Please note that all foreign nationals currently need a visa to enter Japan and if you need a visa application support, please submit your abstract by May 25th, i.e. immediately. Attendance is free, but registration is required by June 15th from the web site: http://www.brain-ai.jp/symposium2022/registration/ Tentative Program: time in JST=GMT+9 <Monday July 4th> 9:00 Registration 9:40 Opening: Kenji Doya 10:00-12:00 Session 1: AI for Brain Science Maneesh Sahani, Angela Langdon, Xiao-Jing Wang, Terrence Sejnowski 12:00-14:00 Lunch and Poster Session 14:00-16:00 Session 2: Biological and robotic motor control Tetsuya Ogata, Tom Macpherson, Jun Izawa, Rieko Osu 16:30-18:30 Session 3: Brain-inspired AI Masashi Sugiyama, Matthew Botvinick, Yutaka Matsuo <Tuesday July 5th> 10:00-12:00 Session 4: AI, Brain, and Society Patricia Churchland, Yoshua Bengio, Ryota Kanai, Ai Koizumi 12:00-13:00 Lunch and Poster Session 13:00-15:00 Session 5: Natural and artificial consciousness Hideaki Shimazaki, Keisuke Suzuki, Makiko Yamada, Tadahiro Taniguchi 15:30-17:30 Session 6: Bayesian Brain and Computational Psychiatry Jun Tani, Karl Friston, Yuichi Yamashita, Misako Komatsu 17:30-18:00 General Discussion - Closing Hope to see many of you in Okinawa, or online. Co-organizers: Kenji Doya (Okinawa Institute of Science and Technology) Karl Friston (University College London) Hiroaki Gomi (NTT Communication Science Laboratories) Takao Hensch (The University of Tokyo International Research Center for Neurointelligence) Maneesh Sahani (Gatsby Computational Neuroscience Unit) Masashi Sugiyama (RIKEN Center for Advanced Intelligence Project) Tadahiro Taniguchi (Ritsumeikan University) Naotsugu Tsuchiya (Monash University) ---- Kenji Doya <doya(a)oist.jp<mailto:doya@oist.jp>> Neural Computation Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna, Okinawa 904-0495, Japan Phone: +81-98-966-8594; Fax: +81-98-966-2891 https://groups.oist.jp/ncu

May 24, 2022

CFP: Frontiers research topic on Neural Dynamics and Behavior in Freely Moving Animals (DL:2022.10.30)

by Panagiotis Symvoulidis

Dear Colleagues, We are organizing the Frontiers Research Topic below, aiming to create a collection of articles across the whole field of neuroscience studies of freely moving animals. Please *consider submitting* your related work and *sharing the call* with potentially interested colleagues. Apologies for the cross-post. *The Brain in Action: Neural Dynamics and Behavior in Freely Moving Animals* *Link*: https://www.frontiersin.org/research-topics/20697/the-brain-in-action-neura… *Details: *Understanding the neural basis of complex behaviors is a primary aim of neuroscience. However, until recently, the field lacked an appropriate set of techniques for simultaneously measuring neural activity and behavior in freely moving animals, forcing investigators to use immobilized animals performing simplistic behavioral tasks. Synergistic technological breakthroughs in fluorescent brain imaging and behavioral tracking approaches have paved the way to a new type of neuroscience that enables tracking behavior in setups compatible with brain imaging and manipulation, even at the single-cell level, using optical electrophysiology techniques. A diversity of such neurobehavioral imaging systems have been recently invented, spanning the range of conventional model organisms including C. Elegans, Flies, Zebrafish, and Rodents. Each species and approach showcases unique technical challenges, achievements, and opportunities. Our aim with this Research Topic is to provide an overview of this new field. We will present not only the technological advances but also discuss the novel type of experiments and insights that they promise. To achieve that, we welcome articles that span the following categories: i) Algorithms and imaging systems for tracking and quantifying complex behaviors of freely moving animals; ii) Molecular tools and microscopes, enabling capturing or manipulating neuronal dynamics. Such systems could include tracking or large field of view microscopes in small animals, head-mounted mini scopes and fiber-based systems for mammalian models, -or non-optical methods; iii) Neuroscience studies, using such tools to generate neurobehavioral datasets (ideally shareable with the community) and new biological findings; iv) Perspective articles on the future possibilities of such systems are also welcome -including ones that discuss alternatives approaches; v) Analysis pipelines and computational neuroscience frameworks exploiting the produced datasets, along with ways to integrate them with existing ( or future) knowledge and techniques. *Keywords*: Brain Imaging, Behavioral Tracking, Quantitative Behavior, Neuronal Dynamics, Freely Moving *Participating Journals:*Frontiers in Neuroscience Frontiers in Neuroimaging *Guest Editors Team:* Prof. Gershow, Prof. Venkatachalam, Dr. Marshall, and Dr. Symvoulidis *Deadline:*30 October 20202 Best, Panos

May 23, 2022