April 2021 - Comp-neuro - lists.cnsorg.org

Research placement positions at Secondmind Labs

by Hrvoje Stojic

Dear all We have just opened five research placement positions at [Secondmind Labs](https://www.secondmind.ai/labs/), based in Cambridge, United Kingdom. The overall area for the placements is Gaussian process models and Bayesian optimisation. The placements are three months long and are typically targeted at PD candidates. More details, including some placement proposals, can be found [here](https://boards.greenhouse.io/secondmind/jobs/5205946002). Note that it is also possible for applicants to propose their own topics for the placement. Kind regards, Hrvoje ----------------------------- Hrvoje Stojic, PhD Web: [https://hstojic.re/](http://hstojic.re/)

April 30, 2021

The Algonauts Project 2021 Challenge- How the Human Brain Makes Sense of a World in Motion

by Gemma Roig

Dear colleagues, We are pleased to announce a new challenge sponsored by The Algonauts Project <http://algonauts.csail.mit.edu/>: How the Human Brain Makes Sense of a World in Motion. We invite you to join us in a competition to develop the best computer model of how the human brain perceives videos of everyday events. Participants who come up with a model that most closely matches recorded brain data will be invited to present their work at a virtual workshop on Sept. 7, 2021 at this year’s Conference on Cognitive Computational Neuroscience (CCN <https://ccneuro.org/2021/>). Submission deadline: Aug. 15, 2021. The Algonauts Project: http://algonauts.csail.mit.edu/ <http://algonauts.csail.mit.edu/> CCN Workshop: How the Human Brain Makes Sense of a World in Motion Sept. 7, 2021 Organizers will summarize the outcome and provide hands-on tutorials. Challenge winners will present the results of their work. We look forward to seeing you at the workshop in September, and we hope you will consider joining the challenge! Best wishes, The Algonauts Project Team Algonauts 2021 Project Team: Radoslaw Cichy, Freie Universität Berlin Aude Oliva, Massachusetts Institute of Technology Gemma Roig, Goethe University Frankfurt Alex Andonian, Massachusetts Institute of Technology Kshitij Dwivedi, Goethe University Frankfurt Monika Graumann, Freie Universität Berlin Polina Iamshchinina, Freie Universität Berlin Kendrick Kay, University of Minnesota Benjamin Lahner, Massachusetts Institute of Technology Alex Lascelles, Massachusetts Institute of Technology N Ratan Murty, Massachusetts Institute of Technology

April 30, 2021

Excellence PhD opening on advanced analyses of monkey recordings in parieto-motor cortices (Aix-Marseille University)

by BATTAGLIA Demian

We are offering one excellence PhD fellowship (3 years) at Aix-Marseille University within the labs of Bjorg Kilavik (experimental electrophysiology; Timone Institute of Neuroscience - INT, Marseille) and Demian Battaglia (computational neuroscience; Institute of Systems Neuroscience - INS, Marseille & University of Strasbourg Institute of Advanced Studies - USIAS). The project will involve the analysis with advanced computational methods (network and activity pattern analyses, machine learning, information theory...) of laminar-specific recordings in parietal and motor cortices of non-human primates. The aim will be to investigate the role of different cortical layers and of their dynamic interactions, mediating the processing and integration of information from bottom-up and top-down sources, in the encoding of motor plans and behaviors. This project corresponds to "ESR1" (https://research.ncl.ac.uk/in2pb/phdprojects/esr1/) within the EU high-level training-by-research consortium "In2PrimateBrains" (https://research.ncl.ac.uk/in2pb/) federating world-leading european groups working in non-human primate neuroscience research. Becoming PhD within the network will offer unique training and interaction opportunities with other In2PrimateBrains members, in addition to the specific research conducted in the host lab. Depending on the profile of the candidate, the PhD project will revolve on the computational analysis side of existing data or may also include the possibility to learn how to acquire new recordings, in a mixed experimental-theoretical project. The fellowship comes with a competitive salary (beyond national averages) within the prestigious Marie Skłodowska-Curie Actions scheme and with grant money for participating to training, conferences, buying equipment... In addition to the training providing within the "In2PrimateBrains" international program, the candidate will also profit ot the local "Neuroschool" graduate program (https://neuro-marseille.org/) offering high-level training (in English language) in integrative neuroscience, research management and soft skills, within one of the largest neuroscience communities in France. Aix-Marseille University is one of few excellence-labelled universities (IDEX) in France, making of interdisciplinary research one of its main axes. Marseille is a vibrant city with wonderful natural surroundings and high-speed train and flight connections to many large cities in Europe. The interesting candidate will file an application through an online form (https://research.ncl.ac.uk/in2pb/phdprojects/) selecting Project "ESR1 - Layer-specific dynamics of parieto-motor networks during visually-guided arm reaching behaviour" as first choice (other projects described on the website can be selected as second and third choice). DEADLINE is 15th May 2021 The top-ranked candidates are then going to be interviewed orally and finally selected through a competitive, equal-opportunities procedure. Applying candidates are strongly invited to make a parallel inquiry by writing to us directly, including a CV, the name of two references and any other information that you may wish to share. Demian Battaglia - demian.battaglia(a)univ-amu.fr Bjorg Kilavik - bjorg.kilavik(a)univ-amu.fr

April 30, 2021

Two Postdoctoral Scholar Positions at Washington University in St. Louis

by Shuo Wang

Our lab will be moving to Washington University in St. Louis in July 2021. We are looking for two highly motivated postdoctoral scholars to work on NSF and DoD funded projects. One postdoctoral scholar will use human single-neuron recordings to study the neural circuits underlying social attention, and the other postdoctoral scholar will use multimodal neuroimaging techniques to study social behavior and brain networks in people with autism. The research will be conducted in a highly collaborative environment using state-of-the-art equipment, facilities, and analytical methods. The postdoctoral scholars will collaborate with an established team of investigators within and outside WashU and have ample opportunity to learn new techniques and methods. Applicants must hold a Ph.D. in systems, cognitive, or computational neuroscience, or in physics, electrical engineering, or computer science, with relevant research expertise in neuroscience. Applicants must also have strong programming (Matlab or similar) skills. Individuals with previous human intracranial EEG expertise and/or macaque single-neuron recordings that wish to expand into human single-unit recordings are encouraged to apply. Our lab combines multimodal and advanced measurement techniques with sophisticated computational approaches to understand the neural mechanisms and neural computations underlying social attention, face processing, emotion, memory, and decision making. Overarching questions involve how the brain figures out what is important in the environment, how socially relevant stimuli pop out and attract attention, how faces are processed and represented in general, and how memory is modulated by attention. We are particularly interested in the neural computations underlying these cognitive processes: multimodal approaches allow us to investigate these questions from the microscopic single-neuron and neural circuit level using our state-of-the-art human single-neuron recordings as well as macroscopic level using fMRI, EEG, and intracranial EEG (sEEG and ECoG). These multimodal experimental approaches are powered by sophisticated computational approaches that can deal with complex and large datasets. Shuo Wang, Ph.D. Assistant Professor West Virginia University https://wangshuo45.wixsite.com/shuowang

April 30, 2021

New Master’s programme Applied Data Science in Göttingen, Germany

by Ecker, Alexander

*New Master’s program Applied Data Science in Göttingen, Germany* https://uni-goettingen.de/msc/datascience In the upcoming winter term, we are launching the new international Master’s programme Applied Data Science at the University of Göttingen. The study programme is characterised by its interdisciplinary nature. Students holding a Bachelor’s degree in data science, computer science or mathematics are welcome, as well as graduates from other fields. We want to equip students with both in-depth knowledge of the key mathematical, statistical and computer science methods for Data Science as well as to make sure they understand how to use these methods in an application domain. Currently, the following application domains can be chosen: Computational Neuroscience, Bioinformatics, Medical Data Science, and Digital Humanities. The Göttingen Campus features an amazing variety of data-intensive research from natural and life sciences to social science and humanities. It includes top-notch research institutions like five Max Planck Institutes, the German Primate Center and the German Aerospace Center. Göttingen a university town located in the centre of Germany and Europe, in a region known for its green hills, lovely small towns with half-timbered houses and the Harz Mountains. Well-connected through motorways and high-speed trains, it is a great place to discover Germany and Europe. For further information see https://uni-goettingen.de/msc/datascience or the flyer: https://owncloud.gwdg.de/index.php/s/gBeb11Io6mw9XiR

April 29, 2021

WWNeurise series on naturalistic behavior & applications/recommendations

by William Podlaski

WorldWideNeuRise will host several online talks throughout May-June on the topic of naturalistic behavior from the following speakers: Wednesday, 5 May, 5pm CET Asaf Gal (Kronauer Lab, The Rockefeller University, USA) Daniel Knebel (Ayali Lab, Tel Aviv University, Israel) Wednesday, 19 May, 5pm CET Constanze Lenschow (Lima Lab, Champalimaud Research, Portugal) Takashi Yamaguchi (Lin Lab, NYU, USA) Wednesday, 2 June, 5pm CET Ayelet Sarel (Ulanovsky Lab, Weizmann Institute of Science, Israel) Tu Anh Nguyen Thi (el Jundi Lab, University of Wuerzburg, Germany) Wednesday, 16 June, 5pm CET Yael Bitterman (Luethi Lab, Friedrich Miescher Institute, Switzerland) Adam Calhoun (Murthy Lab, Princeton University, USA) For more information, please visit our website (https://neurise.github.io/) find us on WorldWideNeuro (https://www.world-wide.org/Neuro/WWNeuRise/) or follow us on Twitter (https://twitter.com/WWNeuRise) We are actively searching for PhD students and postdocs to give talks in our upcoming seminar blocks. On our website (https://neurise.github.io/) you can find an application form to directly apply, as well as a recommendation form, where you can suggest individuals from your lab, institute, or otherwise who you think might have an interesting story to tell! We are looking forward to seeing you at our upcoming seminars! The organising committee, Ellen Boven (Apps lab, University of Bristol) Christina Buetfering (Häusser lab, University College London) Lucie Descamps (Kentros lab, Norwegian University of Science and Technology) Gily Ginosar (Ulanovsky lab, Weizmann Institute) Loreen Hertäg (Clopath lab, Imperial College London) Joram Keijser (Sprekeler lab, TU Berlin) Bill Podlaski (Machens lab, Champalimaud Research)

April 29, 2021

Open Position for a PhD Candidate at the Donders Centre for Cognition

by Nasir Ahmad

*Dear Colleagues,* *We invite applicants for a PhD position on 'Bio-inspired learning algorithms for efficient and robust neural network models with a focus on neuromorphic computing and control of complex environments'.* https://www.ru.nl/english/working-at/vacature/details-vacature/?recid=11475… This project is embedded within the European Laboratory for Learning and Intelligent Systems (ELLIS) Unit in Radboud AI. The aim is to develop highly effective algorithms for training artificial neural network models which make use of (biologically plausible) information local to the individual nodes of the network. This locality will allow efficient implementation and testing of these algorithms on neuromorphic computing systems. The efficacy of the algorithms will be tested in the context of relevant reinforcement learning tasks using a control system theoretic approach to interaction with modelled environments. This work entails a theoretical (mathematical) development of state-of-the-art biologically plausible learning rules and reinforcement learning strategies alongside implementation/testing of these algorithms in the form of neuromorphic computing algorithms and agent-based artificial neural network modelling. We offer you a full-time (100%) position for 4 years. This project is supervised by Prof. van Gerven, Dr Nasir Ahmad and Dr. Bodo Rueckauer. You will be employed at the Artificial Intelligence department of the Donders Institute for Brain, Cognition and Behaviour, where you will have the opportunity to collaborate and interact with renowned international experts in machine learning, computational neuroscience and neuromorphic computing. You will also benefit from the extensive training programme of the Donders Graduate School. Additionally, you will have the opportunity to supervise MSc and BSc students in their thesis projects. 10% of your appointment will be devoted to support tasks in the ELLIS unit, such as helping to organise ELLIS activities or (co)supervision of ELLIS-related projects. If you are interested, please follow the link below for more information and instruction on how to apply: https://www.ru.nl/english/working-at/vacature/details-vacature/?recid=11475… The deadline is 16th May 2021. Feel free to email me or Marcel van Gerven ( marcel.vangerven(a)donders.ru.nl) with any questions/thoughts. Best wishes, Nasir Ahmad

April 29, 2021

Doctoral positions in experimental and computational neuroscience in Mainz and Frankfurt, Germany

by Matthias Kaschube

POSITIONS: The groups of Simon Rumpel at the Medical Center of the University of Mainz and Matthias Kaschube at FIAS in Frankfurt, Germany, together have openings for fully funded doctoral positions in experimental and computational neuroscience. The two groups tightly interact on several interdisciplinary joint projects funded by the German Research Foundation (DFG). Research combines behavioral learning assays, chronic imaging of synapses and activity patterns in the auditory cortex of mice, machine learning-assisted image analysis and data analysis, and neural circuit modelling. The overarching goal of these projects is to gain a deeper understanding of the neural underpinnings of adaptive, yet stable behavior by bridging studies of the dynamic connectome, large scale population activity and behavioral learning. The positions are available immediately. LAB ENVIRONMENTS: The experimental work will be carried out at the Medical Center of the Johannes Gutenberg University in Mainz offering methodology for advanced approaches in systems neuroscience including two-photon microscopy and molecular interventions using AAV vector systems (www.unimedizin-mainz.de/agrumpel) The theoretical work will be carried out primarily at FIAS, a research institution dedicated to fundamental theoretical research in various areas of science (https://www.fias.science/en/neuroscience/research-groups/matthias-kaschube/) FIAS hosts state-of-the-art facilities and has tight links to neuroscience centers at the Goethe University, the Max-Planck Institute for Brain Research and the Ernst Strüngmann Institute for Neuroscience. The Rhine-Main area including the cities of Frankfurt and Mainz is a vibrant metropolitan area in the heart of Europe and boasts a rich cultural community. Due to the strong interactive nature, mutual short- and long-term visits in both labs will be part of the project. QUALIFICATIONS: This call for applications is geared towards theoreticians as well as experimentalists, and also offers a unique opportunity to all who see themselves in between the two poles. Selection criteria include scientific enthusiasm, strong experimental or quantitative skills and past research accomplishments. Applicants must have received training and a master’s degree or equivalent in a relevant quantitative discipline including biomedicine, biology, computer science or physics. Previous experience in neurobiology is advantageous but not essential. APPLYING: Applicants should email a brief letter of intent, a detailed CV and the names of at least two scientists who can give references (in a single PDF) to Simon Rumpel (sirumpel(a)uni-mainz.de, emphasis on the experimental aspects) or Matthias Kaschube (kaschube(a)fias.uni-frankfurt.de emphasis on the computational aspects). The position is available immediately, and we look forward to reviewing applications as they arrive. Both Mainz University and FIAS are dedicated to building a diverse community in its training and employment programs.

April 29, 2021

3 days remaining to submit a "Trainee Talk" for the second Canadian Computational Neuroscience Spotlight

by Scott Rich

The second edition of the Canadian Computational Neuroscience Spotlight (CCNSv2) is fast approaching, with the meeting taking place this coming May 17-18. We now have a permanent homepage for the meeting at ccnsmeeting.ca where you can see details on our finalized list of speakers and our four fantastic session chairs: Drs. Maurizio De Pitta, Etay Hay, Carmen Canavier, and Bratislav Misic. *There are now three days remaining for trainees (undergrads, grad students, postdocs, and research scientists) to submit an abstract for a "trainee talk" via https://forms.gle/bsbrvZca6F1q62RA6 <https://forms.gle/bsbrvZca6F1q62RA6>*. We anticipate all submissions that reasonably fall under the broad banner of "computational neuroscience" will be accepted unless the demand far exceeds our expectations. Talks will either be 8 minutes (with 2 minutes for questions) or 12 minutes (with 3 minutes for questions) depending on the demand. Four submissions that are both the most meritorious and best correspond with the themes of our sessions will be offered a longer, "spotlight" presentation. Please be sure to register for the meeting itself at https://www.crowdcast.io/e/ccnsv2/register if you submit a trainee abstract. Please feel free to spread the news about our meeting to anyone who might be interested as well! We look forward to seeing you at CCNSv2. Sincerely, – Scott Rich, Ph.D. Postdoctoral Research Fellow, Krembil Research Institute – Andreea Diaconescu, Ph.D. Independent Scientist, Krembil Center for Neuroinformatics at CAMH – John Griffiths, Ph.D. Independent Scientist, Krembil Center for Neuroinformatics at CAMH – Milad Lankarany, Ph.D. Scientist, Krembil Research Institute

April 28, 2021

Open PhD Position on Machine Learning for Brain Connectivity in Clinical Neuroscience

by Emanuele Olivetti

We are pleased to announce the opening of one PhD position in neuroinformatics at the International Doctoral School in Cognitive and Brain Sciences (CIMeC) of the University of Trento, Italy. The PhD Grant is funded by the Neuroinformatics Laboratory (NILab) of Fondazione Bruno Kessler (FBK). The position is part of the “Neusurplan” project, an integrated approach to neurosurgery planning based on multimodal and longitudinal data. Neuroimaging methods, like structural, functional, and diffusion magnetic resonance imaging (MRI), can be used to investigate the anatomical and functional connectivity of the brain. In this project, the candidate will pursue research on machine learning methods for neuroimaging data analysis to study and characterize brain connectivity, with applications to longitudinal studies and clinical practice. The ideal candidate should have a mixed background in neuroimaging techniques and numerate disciplines, like computer science, engineering, physics, or mathematics. This project is in collaboration with the Division of Neurosurgery, S. Chiara Hospital, Trento (IT). The position is for a 4 year PhD program (Nov. 1, 2020- Oct. 31, 2024). Courses are in English. The salary is starting at approximately €1.200/mo., net. An additional personal budget of around €5.000 is provided for research and mobility. The University of Trento ranks among top Italian Universities ( https://www.unitn.it/en/ateneo/1636/rankings) Fondazione Bruno Kessler ranks first among the Italian research centers in Engineering and Computer Science ( https://magazine.fbk.eu/en/news/fbk-ranks-1st-in-italy-for-scientific-excel… ). Why choose Trento? ( http://www.unitn.it/en/ateneo/1629/why-choose-the-university-of-trento) Important dates: Deadline for application: 25 May 2021 Evaluation interview: 28 June 2021 Beginning of PhD program: 1 November 2021 Apply now: https://www.unitn.it/en/ateneo/1942/announcement-of-selection https://www.unitn.it/drcimec/105/2021-topic-specific-grants-and-descriptions You are kindly invited to contact in advance Emanuele Olivetti ( olivetti(a)fbk.eu) and Paolo Avesani (paolo.avesani(a)unitn.it) Recent related publications: - Giulia Bertò, Daniel Bullock, Pietro Astolfi, Soichi Hayashi, Luca Zigiotto, Luciano Annicchiarico, Francesco Corsini, Alessandro De Benedictis, Silvio Sarubbo, Franco Pestilli, Paolo Avesani, Emanuele Olivetti, "Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation", Neuroimage, 2021, https://doi.org/10.1016/j.neuroimage.2020.117402 - Gabriele Amorosino, Denis Peruzzo, Pietro Astolfi, Daniela Redaelli, Paolo Avesani, Filippo Arrigoni, Emanuele Olivetti, "Automatic Tissue Segmentation with Deep Learning in Patients with Congenital or Acquired Distortion of Brain Anatomy", Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology (MLCN 2020), https://doi.org/10.1007/978-3-030-66843-3_2 - Pietro Astolfi, Ruben Verhagen, Laurent Petit, Emanuele Olivetti, Jonathan Masci, Davide Boscaini, Paolo Avesani, "Tractogram filtering of anatomically non-plausible fibers with geometric deep learning", Medical Image Computing and Computer Assisted Intervention (MICCAI 2020), https://doi.org/10.1007/978-3-030-59728-3_29 -- Emanuele Olivetti, Ph.D. Senior Research Scientist at Bruno Kessler Foundation (FBK-ICT) NeuroInformatics Laboratory (NILab) http://nilab.fbk.eu Center for Mind and Brain Sciences (CIMeC), University of Trento Via delle Regole 101 - 38123 Mattarello (Trento), ITALY olivetti(a)fbk.eu - +39 0461314179 emanuele.olivetti(a)unitn.it - +39 0461282760 -- -- Le informazioni contenute nella presente comunicazione sono di natura privata e come tali sono da considerarsi riservate ed indirizzate esclusivamente ai destinatari indicati e per le finalità strettamente legate al relativo contenuto. Se avete ricevuto questo messaggio per errore, vi preghiamo di eliminarlo e di inviare una comunicazione all’indirizzo e-mail del mittente. -- The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. If you received this in error, please contact the sender and delete the material.

April 28, 2021