October 2015 - Comp-neuro - lists.cnsorg.org

Focus session on sensorimotor circuits at 2016 APS March Meeting

by Tatyana Sharpee

Dear Colleagues, Please consider submitting an abstract for the next APS March Meeting, and i n particular, for the Focus Session "Physics of Sensorimotor Neural Circuits .” The meeting will take place in Baltimore, MD, on March 14-18, 2016. Abstract submission deadline: November 6, 2015, 5:00pm EST You can submit abstracts for CONTRIBUTED TALKS for this Focus Session and ot hers (see below for a list of session especially relevant to neuroscience). As a session organizer, I’d like to invite you to submit exciting new work o n sensory and/or motor neural systems. The focus session will consist of 2 i nvited talks and ~8 contributed talks. Submission and relevant information is through the APS site: http://www.aps.org/meetings/march/scientific/index.cfm Please note that only APS members (or members of reciprocal societies) can s ubmit the abstracts. You can obtain your membership online. Invited and Focus sessions of relevance to neuroscience will include, among others, 1. Large Scale Neuroscience Projects 2. Theoretical physics and networks of real neurons 3. Inference in Biophysics 4. Principles of Cell-to-Cell communication 5. Brain Morphology and Mechanics: From Cortex Folding to Neuronal Growth to Compression Stiffening 6. Robophysics: physics meets robotics 7. Physics of sensorimotor neural circuits 8. Neural control of behavior 9. Maximum entropy models: a promising link between statistical physics, inf erence, and biology 10. Critical transitions in biological systems Some of the invited speakers include: Vijay Balasubramanian (U Pennsylvania) William Bialek (Princeton U) Gwyneth Card (Janelia Farm) David van Essen (Washington U, St. Loius) Adrienne Fairhall (U Washington) Surya Ganguli (Stanford U) Mark Goldman (UC Davis) Alexei Koulakov (CSHL) Thierry Mora (ENS) Stephanie Palmer (U Chicago) Hanchuan Peng (Allen Institute) Elad Schneidman (Hebrew U) Terry Sejnowski (Salk Institute) Naftali Tishby (Hebrew U) Gasper Tkacik (IST Austria) and others. We are now accepting abstract submissions for contributed talks on a broad range of topics on the intersection of physics and neuroscience, such as quantitative experimental protocols, modeling of neural dynamics, analysis of collective computation in neural circuits, and others. Best Regards, Tatyana Tatyana O. Sharpee, PhD Associate Professor Helen McLoraine Developmental Chair Computational Neurobiology Laboratory Salk Institute for Biological Studies La Jolla, CA 92037

Oct. 30, 2015

Graduate training in Perception, Brain, & Behavior at UT Austin

by Mary Hayhoe

Graduate training in Perception, Brain, & Behavior at UT Austin The program in Perception, Brain & Behavior at The University of Texas at Austin is encouraging applications for interdisciplinary graduate study in vision sciences, with emphasis on naturalistic tasks and stimuli. Housed in the Department of Psychology, the Institute for Neuroscience, and the Center for Perceptual Systems, our program is a vibrant, growing, and highly-collaborative collection of research laboratories boasting world-class facilities for conducting research in visual perception, visually guided actions, and the underlying neural mechanisms. These facilities include fMRI, eye tracking, head and body tracking, face and facial expression tracking, virtual reality, the collection of 3D time-varying natural scene statistics, computationally-intensive modeling and computer graphics, psychophysics, 2 photon microscopy, optical imaging, and electrophysiology. Funding opportunities are available through an NIH training grant, Research Assistantships, Fellowships, and Teaching Assistantships. Faculty actively engaging in interdisciplinary research in the program include: Dana Ballard: computational neuroscience, machine learning, visuo-motor control Larry Cormack: natural tasks and psychophysics; 3D motion perception Ila Fiete: computational neuroscience, neural coding Bill Geisler: vision and natural scene statistics; computational modeling Mary Hayhoe: eye movements, attention, virtual environments. Alex Huk: sensory-motor decisions, neural mechanisms of motion and depth perception Ian Nauhaus: neural coding, cortical organization, computational neuroscience Nicholas Priebe: neural coding in early visual cortex, intracellular recording Eyal Seidemann: optical imaging and electrophysiology of early visual cortex Max Snodderley: retina and early visual cortex, retinal disease. More information on our research can be found at www.cps.utexas.edu, and we encourage you to contact investigators directly if you are interested in their research. You can apply via the Ph.D. programs in Neuroscience http://neuroscience.utexas.edu/program/ 512-471-3640, neuroscience(a)mail.clm.utexas.edu and Psychology http://www.psy.utexas.edu/psy/GradProgram/gradhome.html 512-471-6398, gradoffice(a)psy.utexas.edu Mary Hayhoe Center for Perceptual Systems University of Texas Austin 108 E. Dean Keeton Blvd, Stop A8000 Austin TX 78712-1043 hayhoe(a)utexas.edu

Oct. 30, 2015

Cognitive and Information Sciences Ph.D. Program - University of California, Merced

by David Noelle

The Cognitive and Information Sciences graduate program at the University of California, Merced has positions available for Ph.D. students entering Fall 2016. We offer interdisciplinary training in human neural, behavioral, and social processes and their dynamics. The program is research-intensive, and a wide range of projects and collaborations are available for students to join, and take on leading roles as they progress through the program. Topics include language, speech, communication, movement coordination, interpersonal interaction, human-computer interaction, philosophy of mind, philosophy of cognitive science, memory, executive control, search, neural networks, learning, and dynamical and complex systems. The word “information” in CIS denotes our emphases on data science and engineering, computational modeling, and technological applications that support and even emulate intelligent behaviors. Students who graduate from our Ph.D. program have career opportunities in academia as well as technology industries. Please visit our program website for information about CIS: http://cogsci.ucmerced.edu/ Applications may be submitted through the graduate division website: http://graduatedivision.ucmerced.edu/ For full consideration, applications should be received by December 15, although we will continue to accept applications until January 15. Top candidates will be invited and reimbursed to visit the campus February 5-6, to meet with our faculty and students and learn more about the program. Multi-year offers of financial support are available, which include full tuition and competitive stipends. If you have any further questions, please email the faculty member(s) who most closely align with your research interests.

Oct. 29, 2015

Mechanization of Consciousness for the Development of Strong AI

by Lleuvelyn Cacha

*Dear Colleagues,* This book is suitable for anyone interested in strong AI *Biophysics of Consciousness: A Foundational Approach* http://www.worldscientific.com/worldscibooks/10.1142/9444 650pp Feb 2016 ISBN: 978-981-4644-25-9 (hardcover) Normal price * USD158.00* *Contents:* · Preface · Foreword: Addressing the Hard Problem of Consciousness · Contents · Neurobiological Naturalism · The Evolutionary Origins of Consciousness · How Language Evolution Reshaped Human Consciousness · Consciousness by Surprise: A Neuropsychoanalytic Approach to the Hard Problem · Can Qualitative Biophysics Solve the Hard Problem? · The Causal Roots of Integration and the Unity of Consciousness · The Holoinformational Foundations of Consciousness · Neural Transition Dynamics and Conscious Perceptive States · The Two-Brains Hypothesis: Implications for Consciousness · The Origins of the Brain's Endogenous Electromagnetic Field and Its Relationship to Provision of Consciousness · Consciousness as a Quantum Dynamic Effect · Quantum Spin Formalism on Consciousness · The 'Quantum Underground': Where Life and Consciousness Originate · Consciousness in the Universe — An *Updated* Review of the 'Orch OR' Theory · Index *Readership:* Researchers in neuroscience, cognitive science, biophysics, quantum physics and strong AI. Available for Amazon books at a Pre-order Price Guarantee USD$*100.62* http://www.amazon.com/Biophysics-Consciousness-A-Foundational-Approach/dp/9… Lleuvelyn Cacha, PhD

Oct. 29, 2015

Postdoctoral Fellow position

by Jon Sensinger

Postdoctoral Fellow sought in Computational Motor Control / Psychophysics General Summary A Post Doctoral Fellow in computational motor control or psychophysics to join a dynamic multi-disciplinary team at the University of New Brunswick, Canada, studying the internal models that a unique group of upper-limb amputees have. These amputees have had targeted sensory reinnervation surgery such that when their upper arm is touched, it feels like you are touching their hand . This sensation remains stable over time. With funding from the U.S. NIH, our collaborators at the Cleveland Clinic and the University of Alberta have developed miniature robotic devices that can apply appropriate feedback throughout the day , and with funding from DARPA we are developing quantitative metrics of feedback incorporation . The role of this post-doctoral position is to quantify if the feedback improves this unique group of amputee's ability to form internal models regarding control of their prosthetic arm or interaction with their environment, ultimately leading to more precise control with less mental effort. The 12-month project is led by Jon Sensinger, PhD, the associate director of the Institute of Biomedical Engineering (IBME) at the University of New Brunswick. Dr. Sensinger's research focuses on developing computational models of how we interact with prosthesis control , along with prosthesis and exoskeleton design and control. IBME includes scientists, engineers, and clinical staff. Principal Responsibilities 1. Develop psychophysics and force-field based experiments to assess the strength of the internal models these subjects have with and without the sensory feedback. 2. Must work in close consultation with engineering, prosthetists, and therapists. 3. Keeps informed of developments in field to maintain and enhance professional expertise; offers suggestions regarding continuing development of program. Knowledge, Skills & Abilities Required 1. Applicants should have a doctoral degree and relevant research experience in engineering, neuroscience, psychophysics, or a related field. 2. Experience with computational motor control or psychophysics. 3. Awareness of gross anatomy and neural anatomy is preferred. 4. Interpersonal skills necessary to communicate effectively with patients, research subjects, team members, and project collaborators. 5. Analytical skills to select and interpret experiments. 6. Communication skills necessary to write detailed explanatory reports and articles and to verbally communicate results of research at meetings and conferences. Please send a cover letter and C.V. to Dr. Sensinger (j.sensinger(a)unb.ca) for more details. Relevant links: http://www.pnas.org/content/104/50/20061.abstract http://www.ncbi.nlm.nih.gov/pubmed/21252109 http://blogs.unb.ca/newsroom/2015/02/09/research-team-receives-up-to-2-5-mi… https://www.youtube.com/watch?v=eEzbuiJi0T0 http://www.ece.unb.ca/jsensing

Oct. 29, 2015

Computational Neuroscience PhD Positions at Emory University and Georgia Tech

by Jaeger, Dieter

Applicants for PhD programs in the field of Computational Neuroscience are encouraged to consider the joint training program in this area at Emory University and Georgia Tech (www.compneurosci.college.emory.edu<http://www.compneurosci.college.emory.edu>). Our faculty span multiple subareas of the discipline ranging from the computational analysis of ion channels to behavioral neuroscience, neural imaging, and neurotechnology in a highly collaborative atmosphere. The computational training program includes students from our Neuroscience and Biomedical Engineering PhD programs and involves a set of core classes, a weekly journal club or methods clinic, an annual retreat, and many opportunities for collaborative research projects. All PhD students are fully funded for their tenure at Emory and/or Georgia Tech. Applications are submitted via the Neuroscience training program (http://biomed.emory.edu/PROGRAM_SITES/NS/) with a deadline of December 1 or the Biomedical Engineering program (https://www.bme.gatech.edu/bme/graduate) also with a deadline of December 1. Pre-submission contacts with anyone on the faculty list for the program (http://www.compneurosci.college.emory.edu/faculty/faculty-profiles/index.ht…) are welcome and we will be happy to answer such queries. Atlanta is a great place to live and experience all four seasons of the year, with many affordable housing options in close proximity to either campus, and a large range of cultural activities involving almost all nationalities. The biking/hiking/eating culture is exploding. Food and shopping are superb and also internationally diverse, the Appalachians and the oceans are easy weekend destinations, and through the busiest airport in the world (Atlanta Hartsfield) many destinations are easily reached. Authored by: Dieter Jaeger, Dept. of Biology, Emory University; djaeger(a)emory.edu Garrett Stanley, Biomedical Engineering, Georgia Tech and Emory; garrett.stanley(a)bme.gatech.edu Robert Butera, Electrical Engineering and Biomedical Engineering, Georgia Tech; rbutera(a)gatech.edu Robert Liu, Dept. of Biology, Emory University; robert.liu(a)emory.edu ________________________________ This e-mail message (including any attachments) is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this message (including any attachments) is strictly prohibited. If you have received this message in error, please contact the sender by reply e-mail message and destroy all copies of the original message (including attachments).

Oct. 28, 2015

Post-doctoral position in Computational Neuroscience, Moreno-Bote, Barcelona

by Ruben Moreno Bote

*Post-doctoral position* *Computational Neuroscience, Moreno-Bote Lab * *University Pompeu Fabra, Barcelona, Spain* We are looking for strong post-doctoral candidates interested in joining the group of Theoretical Neuroscience of Rubén Moreno-Bote lab. We are looking for excellent post-doctoral candidates with Physics, Mathematics or Machine Learning background, ideally with knowledge of Neuroscience or Computational Neuroscience, and interested in theory and applications. The publication record of the candidate should be very strong in his/her respective discipline. The candidate will develop state of the art mathematical techniques to understand neuronal dynamics and will have access to multielectrode recording neural data. He/she could also be involved in the design of electrophysiology experiments through our collaborators. The candidate will benefit from the stimulating environment of Barcelona area in Theoretical and Systems Neuroscience and will have the opportunity of enjoying a lively city. Our lab (http://www.upf.edu/pdi/ruben-moreno-bote) forms part of a larger network of neuroscience labs in Barcelona ( http://www.barcelonaneuroscience.com) Financial support is provided up to 3 years by a FLAG ERA grant. Our lab has recently moved to a new location, the University Pompeu Fabra, where a large community of researchers works on cognitive and computational neuroscience (http://cbc.upf.edu/?language=en) APPLICATION : A full CV in pdf format, a 1 page project in pdf format, and names and email addresses of 2 referees should be sent to the following address: ruben.moreno(a)upf.edu Informal inquiries are welcome. DEADLINE: up to the position is filled -- Rubén Moreno Bote Serra Húnter Professor Dept. of Information and Communication Technologies University Pompeu Fabra La Nau building, office 51017 08018 Barcelona, Spain http://www.upf.edu/pdi/ruben-moreno-bote

Oct. 28, 2015

Call for participation Neural Synchronization Frontiers Topic

by GUEVARA ERRA RAMON MARIANO

Dear potential authors on the comp-neuro mailing list, This is a call for participation at a special issue (Frontiers Topic) on neural synchronization, that we are currently editing: 'Large-scale neural synchronization and coordinated dynamics: a foundational approach' Web site: http://journal.frontiersin.org/researchtopic/4079/large-scale-neural-synchr… Description: A fundamental question in neuroscience is how segregation and integration of information takes place by the temporal coordination of differentiated, specialized brain areas. Neural synchronization is often invoked as a mechanism of coordinated activity, and in the last ten years there has been a great effort to understand its significance, to clarify its physiological and computational roles and its relationship with brain rhythms and abnormal brain functioning (as in epilepsy or Parkinson’s disease). But in a broader sense, synchronization is an old concept, arising from the studies of oscillators in non-linear dynamics. It is indeed a widespread phenomenon, reflecting the coupling between self-oscillating units. However, the association between coupling and coordinated activity is not completely understood in the context of brain dynamics, most critically when this relationship is extended to large networks of interacting neurons. What do we mean when we use the term ‘synchronization’ in neuroscience? How can we measure physical coupling when real experiments can only tell us about temporal statistical correlation? Can we freely use concepts from oscillation theory to describe brain dynamics? In this Research Topic we welcome contributions from different backgrounds and perspectives to promote a deeper understanding of the relationship between neural synchronization and physical coupling between neuronal networks, and its implications for functional connectivity in the normal and the pathological brain. This topic will include, among others, contributions with the following themes: 1) Foundations of large-scale neural synchronization, based on physical theories of oscillation. 2) The computational role and metabolic cost of neural synchronization, and its relation to brain rhythms. 3) Behavioral and cognitive consequences of oscillatory activity in the human brain. 4) Synthesis and state-of-the-art on measuring neural synchronization in experimental settings. 5) Recent methods for the reconstruction of connectivity in oscillatory networks. 6) Applications of the concept of neural coupling and oscillatory activity in a medical setting, such as monitoring and control of neural synchronization in brain pathologies affecting coordination dynamics. Looking forward to have your contributions.Those interested please write to Ramon Guevara (guevara.erra(a)gamil.com) Best wishes, Ramon Guevara Erra University Paris Descartes, Paris, France Jose Luis Perez Velazquez Hospital for Sick Children and University of Toronto, Toronto, Canada

Oct. 28, 2015

PhD position: theoretical and computational neuroscience

by K Tsaneva-Atanasova

PhD position in Modelling spine calcium dynamics: implications for synaptic plasticity ----------------------------------------------------------- Based within the EPSRC Centre for Predictive Modelling in Healthcare at the University of Exeter, a £2M initiative bringing together mathematicians, statisticians and clinicians, you will work on a project aiming to investigate the mechanisms and hence understand the regulation of calcium transient dynamics shown to be a critical trigger for synaptic plasticity in dendritic spines. In order to do this we will develop and analyse three-dimensional mathematical models using finite element methods. Therefore I am looking for candidates trained in quantitative fields whose interest has turned to the study of synaptic plasticity and calcium dynamics. This project is one of a number that are in competition for funding from the South West Biosciences Doctoral Training Partnership (SWBio DTP). The SWBio DTP is a BBSRC-funded PhD training programme in the biosciences, delivered by a consortium comprising the Universities of Bristol (lead), Bath, Cardiff and Exeter and Rothamsted Research. The SWBio DTP projects are designed to provide outstanding interdisciplinary training in a range of topics in World-Class Bioscience, underpinned by training in mathematics and complexity science. Each project is supervised by an interdisciplinary team of academic staff and will follow a structured training 4 year PhD model. In particular the project on "Modelling spine calcium dynamics: implications for synaptic plasticity" stems form a long-standing collaboration between Prof Krasimira Tsaneva-Atanasova (main supervisor, Exeter) and Dr Jack Mellor (co-supervisor, Bristol http://www.bris.ac.uk/synaptic/people/66711/) To Apply: Candidates with strong quantitative training (e.g. a BSc or MSc in Physics, Mathematics, Computational Neuroscience, Computer Science, or Engineering) and evidence of scientific achievement are invited to apply. Knowledge of neuroscience is a plus. Please apply using the following link: http://www.exeter.ac.uk/studying/funding/award/?id=1977 ----------------------------------------------------------- Krasimira Tsaneva-Atanasova Professor of Mathematics for Healthcare College of Engineering, Mathematics and Physical Sciences University of Exeter Exeter, Devon, EX4 4QF, UK tel: +44 (0) 1392 723615 email: k.tsaneva-atanasova(a)exeter.ac.uk web: http://emps.exeter.ac.uk/mathematics/staff/kt298 ALTEREGO - Enhancing Social Interaction with an AlterEgo artificial agent http://www.euromov.eu/alterego/homepage

Oct. 28, 2015

PhD/Postdoctoral Position at the Max Planck Institute for Biological Cybernetics in Tübingen, Germany

by Filip Sobczak

*PhD/Postdoctoral Position at the Max Planck Institute for Biological Cybernetics in Tübingen, Germany * The Department of High-field Magnetic Resonance at the Max Plank Institute for Biological Cybernetics in Tübingen is offering one PhD position and one postdoctoral fellow position under the supervision of Dr. Xin Yu (Group Leader at MPI for Biological Cybernetics). This position is open until filled. *Research Description*: Understand and learn to control the brain circuits underlying critical brain states, such as coma or arousal. Potential assignments: a. build up the multi-modal platform to monitor the brain states of rat coma models, e.g. implementing the MRI/EEG/calcium recording methods for global brain state verification. b. target specific nuclei with deep brain optogenetic stimulation methods, potentially involved in developing real-time biofeedback controlling schemes. Experience with signal processing and programming is highly desired*. *The candidates should bear a certain experience or strong interest on brain functional imaging, e.g. task-based BOLD fMRI. The Max Plank Institute for Biological Cybernetics is located in Tübingen, Germany. The High-field Magnetic Resonance Department is equipped with the 3T, 9.4T human MR scanner and 14.1T animal Bruker MR Scanner. The Max Planck Society is an affirmative action/equal opportunity employer, and encourages applications from qualified women and minority candidates. Please send your CV (in English) to Dr. Yu if interested. Contact info: Dr. Xin Yu Research Group leader Max-Planck Institute for Biological Cybernetics Spemannstrasse 41 72076 Tübingen Germany E-mail: xin.yu(a)tuebingen.mpg.de; phone: 49 7071 601-740 Dr. Yu has published seminal papers on small animal high field MRI in *Nature Neuroscience, Nature Methods, Neuron, PNAS, NeuroImage* etc.

Oct. 28, 2015