- Comp-neuro - lists.cnsorg.org

Towards a standard organization for animal electrophysiology: a new BIDS Extension Proposal

by Sylvain Takerkart

(apologies for cross-postings) Dear everyone, With this email, we would like to introduce a new BIDS Extension Proposal (BEP) dedicated to electrophysiological data recorded in animals (BIDS-animal-ephys). The BEP document is available here <https://docs.google.com/document/d/1oG-C8T-dWPqfVzL2W8HO3elWK8NIh2cOCPssRGv…> and we are now seeking feedback (e.g comments directly in the document, or posts in our discussion forum <https://github.com/INCF/neuroscience-data-structure/issues>) from the community at large to make sure this suits the largestpossible array ofneeds in animal electrophysiology. A bit of context and history. BIDS <https://bids.neuroimaging.io/> is a simple and intuitive way to organize and describe neuroscientific data in a standardized manner, originally developed for human neuroimaging data (see the first paper on MRI-BIDS <https://doi.org/10.1038%2Fsdata.2016.44>), and widely extended since its original introduction to other data modalities (see e.g EEG-BIDS <https://doi.org/10.1038/s41597-019-0104-8>, or MEG-BIDS <https://doi.org/10.1038/sdata.2018.110>). A good number of exchanges have already taken place with electrophysiologists, with initial debates on whether adapting the hierarchical organization offered (and imposed) by BIDS (for other data modalities and recorded in human subjects) could suit the needs of the community of researchers working with animal models. Of course, it will change the habits of some, but a consensus has emerged that sticking to what BIDS suggests could suit the needs of a vast majority and that the long term benefits of such a standardization could be worth changing some habits. These observations have led to the formalization of this BIDS-animal-ephys Extension Proposal (BEP). For info, this BEP has been drafted by members of the INCF Working Group on Standardized Data Structures <https://incf.org/sig/incf-working-group-standardized-data>, that was initiated in 2020 to attempt standardizing the handling of neuroscientific data recorded in animal models. Note that at the present time (early 2021), the discussions in this Working Group are split to tackle two different issues: - How to handle animal data in a generic manner (i.e across data modalities, for both in vitro and in vivo data etc.)? The specific discussion about this topic is centralized here <https://github.com/INCF/neuroscience-data-structure/issues/9>. - How to handle electrophysiological data recorded in animals, and how to standardize the associated metadata? This is the main objective of the present BEP. Please consider joining this working group if you would like to contribute to this effort (either directly on these topics, or for other questions / data modalities). You can also reach the moderators of the present BEP through our main discussion forum <https://github.com/INCF/neuroscience-data-structure/issues>. Also, please do not hesitate to forward this message around you so that we reach as many electrophysiologists as possible! Thanks in advance for your feedback and contributions! -- Sylvain Takerkart Institut des Neurosciences de la Timone (INT) UMR 7289 CNRS-AMU Marseille, France tél: +33 (0)4 91 324 007 http://www.int.univ-amu.fr/_TAKERKART-Sylvain_?lang=en

March 11, 2021

2 PhD positions in Sensory Neurotechnology in the Reichenbach lab

by Tobias Reichenbach

2 PhD positions in Sensory Neurotechnology in the Reichenbach lab, Friedrich-Alexander-University (FAU) Erlangen-Nuremberg, Germany The newly founded Chair for Sensory Neuroengineering, headed by Tobias Reichenbach, at the new Department Artificial Intelligence in Biomedical Engineering is looking for two PhD students. In close collaboration with clinical and industrial partners, the lab researches on the neural foundations of hearing, as well as on new technology for better treatments of hearing impairment. The PhD students will develop and apply AI methods to analyse neurological data on human speech processing. They will also develop AI methods to construct audiovisual speech signals for better speech comprehension. FAU is the most innovative university in Germany and ranks second among the most innovative European universities. It is located in one of the most attractive regions in Germany. Erlangen is a bicycle-friendly city with 100,000 inhabitants, former home of the Huguenots as well as a key location for Siemens. It is close to Nuremberg, a city with a population of half a million and a metropolitan flair. The mixture of academia, innovative companies, art and culture makes the region the perfect place for creative minds, keen athletes and nature lovers. More information is available here: https://www.jobs.fau.de/jobs/2-phd-studentships-in-sensory-neurotechnology-… <https://www.jobs.fau.de/jobs/2-phd-studentships-in-sensory-neurotechnology-…> ------------------------------------------- Prof. Dr. Tobias Reichenbach Department Artificial Intelligence in Biomedical Engineering (AIBE) Friedrich-Alexander-University (FAU) Erlangen-Nuremberg Henkestrasse 91 91052 Erlangen http://www.bg.ic.ac.uk/research/reichenbach/

March 10, 2021

Postdoc position in Theoretical/Computational Neuroscience at Washington University in St. Louis

by Tavoni, Gaia

POSTDOC POSITION IN THE TAVONI LAB Applications for a postdoc position at the interface between physics and neuroscience are open at the newly set up Theoretical and Computational Neuroscience lab at Washington University in St. Louis. The selected candidate will work on one or more computational problems, involving models of plasticity and learning, memory and decision-making. A brief description of the projects can be found at http://neurosci.wustl.edu/People/Faculty/Gaia-Tavoni. <http://neurosci.wustl.edu/People/Faculty/Gaia-Tavoni>The underlying research theme in the lab is the search for optimal principles of information representation and processing in the brain that underpin the flexibility of animal behavior. A range of approaches are used, including methods from statistical physics, information theory and dynamical systems. Washington University in St. Louis is ranked in the top 10 globally for Neuroscience and Behavior, and offers an outstanding intellectual environment for neuroscience research. This includes a strong interest in computational neuroscience (see https://sites.wustl.edu/compneuro) The lab is based at the Medical School in the Department of Neuroscience and the Institute for Informatics, and expects to develop strong links with the Departments of Engineering, Physics and Mathematics. Job Requirements: Candidates with backgrounds in physics, mathematics, engineering or computer science, good programming skills, familiarity with neuroscience topics or a keen interest in computational neuroscience, proficiency in English, intellectual curiosity and drive are welcome to apply. How to Apply: For further information and applications please contact Dr Gaia Tavoni (gaia.tavoni(a)wustl.edu) including a detailed CV, a brief statement of research experience and interests (max 2 pages), names and email addresses of 2 references. Please indicate "Post-doc application" as the subject of your email. Applications will be reviewed on a rolling basis until position is filled. Gaia Tavoni Assistant Professor Department of Neuroscience Washington University School of Medicine East McDonnell Medical Sciences, 312B St. Louis, MO 63110 email: gaia.tavoni(a)wustl.edu

March 9, 2021

New book: "The Spike: An Epic Journey Through the Brain in 2.1 Seconds"

by Mark Humphries

For anyone interested in how neurons do what they do, my new book “The Spike: An Epic Journey Through the Brain in 2.1 Seconds” from Princeton University Press is available now from your favourite bookseller in hardback, ebook, and audiobook. It’s a rollercoaster ride through your brain, from eye to hand and everywhere in between, that sweeps through 30 years of the deepest neuroscience to the frontiers of what we know about how neurons work. >From the blurb: “We see the last cookie in the box and think, can I take that? We reach a hand out. In the 2.1 seconds that this impulse travels through our brain, billions of neurons communicate with one another, sending blips of voltage through our sensory and motor regions. Neuroscientists call these blips “spikes.” Spikes enable us to do everything: talk, eat, run, see, plan, and decide. In The Spike, Mark Humphries takes readers on the epic journey of a spike through a single, brief reaction. In vivid language, Humphries tells the story of what happens in our brain, what we know about spikes, and what we still have left to understand about them.” Watch the animated introduction: https://youtu.be/Rn-FAvM6wbE Read the reviews and details: https://press.princeton.edu/books/hardcover/9780691195889/the-spike Listen to a sample from the audiobook: https://soundcloud.com/user-671277267/the-spike-by-mark-humphries?in=user-6… Thanks! Mark Humphries This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please contact the sender and delete the email and attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. Email communications with the University of Nottingham may be monitored where permitted by law.

March 9, 2021

Online Bernstein Conference 2021 - Call for Satellite Workshop Proposals

by a.dorrn＠fz-juelich.de

The Bernstein Network Computational Neuroscience<https://bit.ly/BN_welcome> invites proposals for Satellite Workshops at the online Bernstein Conference 2021 ____ BERNSTEIN CONFERENCE Each year the Bernstein Network invites the international computational neuroscience community to the annual Bernstein Conference for intensive scientific exchange. It has established itself as one of the most renown conferences worldwide in this field, attracting students, postdocs and PIs from around the world to meet and discuss new scientific discoveries. Due to the ongoing pandemic the Bernstein Conference<https://bit.ly/BC21_online> will be held online, from Sep 21 – 23, 2021. ____ IM IMPORTANT DATES - Satellite Workshops: September 21, 2021, 2 pm – 10 pm CEST - Main Conference: September 22 – 23, 2021 - Deadline for Satellite Workshop proposal submission: May 10, 2021 - Notification of workshop acceptance: planned in June 2021 ____ WORKSHOP PROPOSALS Satellite Workshops of the Bernstein Conference provide a stage to discuss topical research questions, novel scientific approaches and challenges in Computational Neuroscience and related fields. Workshops addressing controversial issues, open problems, and comparisons of competing approaches are encouraged. The format should be designed to foster debate, rather than a series of talks. The Workshop Selection Committee will take scientific excellence, topical relevance gender diversity and variety of career levels into account as their selection criteria. Workshop proposals are welcome as flexible formats of 4-8 hours (all workshops will start at 2 pm CEST, but will end based on individual schedules) Workshop Proposal Forms can be downloaded here: http://bit.ly/BC21_workshops Please submit the completed form to bernstein.conference(a)fz-juelich.de Deadline: May 10, 2021 – not to be extended Workshop organizers and all speakers will receive a waiver for the online conference. ____ WORKSHOP SELECTION COMMITTEE Marion Silies (Workshop Chair) Moritz Helias (Workshop Vice Chair) Matthew Botvinick Megan Carey Peter Dayan Brent Doiron Rainer Friedrich Julijana Gjiorgjieva (Program Chair) Ann Hermundstad Christian Machens (Program Vice Chair) Srdjan Ostojic Nathalie Rochefort Nicole Rust Gasper Tkacik ____ For any further questions, please contact: bernstein.conference(a)fz-juelich.de -- Dr. Anja Dorrn Scientific Coordinator Bernstein Network Computational Neuroscience | Bernstein Coordination Site (BCOS) Branch Office of the Forschungszentrum Juelich at the University of Freiburg Hansastr. 9A | 79104 Freiburg, Germany phone: (+49) 0761 203 9589 email: a.dorrn(a)fz-juelich.de<mailto:a.dorrn@fz-juelich.de> web: www.bernstein-network.de<http://www.bernstein-network.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

March 9, 2021

CfP: Special Issue on Probabilistic Inference in Goal-Directed Human and Animal Decision-Making - Entropy by MDPI. *Deadline is approaching*

by Domenico Maisto

Dear Colleagues, You are cordially invited to submit a manuscript to the Entropy Special Issue "Probabilistic Inference in Goal-Directed Human and Animal Decision-Making" https://www.mdpi.com/journal/entropy/special_issues/probabilistic_inference\ The firm deadline for manuscript submissions is 21 March 2021. Please find further information below. With best regards, Domenico Maisto ================================================================ Open Access Journal ENTROPY by MDPI Special Issue on Probabilistic Inference in Goal-Directed Human and Animal Decision-Making ----------------------------------------------------------------------------------------------------------------- This Special Issue aims to focus on recent advances in probabilistic inference in goal-directed human and animal decision making, and we welcome submissions that: - Shed light on the computations of neuronal circuits involved in goal-directed decision making, with a focus on the inferential mechanisms involved; - Propose novel probabilistic models and methods in decision making including (but not limited to) information-theory approaches, statistical and free- energy minimization, hierarchical models, and deep networks; - Introduce decision-making applications in ethological, social, psychological, psychiatric, robotics, and computer science research. Guest Editors Dr Francesco Donnarumma Dr Domenico Maisto Dr Ivilin Stoianov Entropy is an Open Access Journal by MDPI with high visibility (indexed within Scopus, SCIE (Web of Science), MathSciNet, Inspec, PubMed, PMC, and many other databases), excellent citescore (IF: 2.494; 2019 Scopus data: 3.7, which equals rank 8/62 (Q1) in 'Mathematical Physics', 14/54 (Q2) in 'Physics and Astronomy', 210/670 (Q2) in 'Electrical and Electronic Engineering', and 104/300 (Q2) in 'Information Systems'), and rapid publication. -- Domenico Maisto, PhD Institute for High-Performance Computing and Networking (ICAR), Italian National Research Council (CNR) Via Pietro Castellino 111, 80131, Napoli Italy Phone: +39 0644595208 (Rome), +39 0816139507 (Naples) Fax: +39 0644595243 (Rome), +39 0816139531 (Naples) e-mail: domenico.maisto(a)icar.cnr.it

March 8, 2021

Teaching-focused job opportunity at UCL

by Andre Altmann

Hi everyone: We are looking for a postdoc who is interested in teaching and curriculum design to help us run a new training program primarily aimed at UK researchers who want to gain more confidence in working with medical image data in their research. The program will consist of a series of various short courses, online and in-person, that combine image analysis, software development, and data management. The post holder will be responsible for day-to-day leadership of the curriculum design, as well as the content development and delivery. The job advert, description and how to apply can be found at the link below: https://bit.ly/ucl-ideas-job If people have any questions or want to find out more, they can send them to healthbioscienceideas(a)ucl.ac.uk Kind regards, Andre

March 8, 2021

postdoctoral position: computational cognitive science of economic behavior

by Michael Woodford

The Cognitive and Behavioral Economics Initiative at Columbia University invites applications for a Postdoctoral Research Associate position in the fields of Behavioral Economics, Neuroeconomics, or Computational Cognitive Science to begin July 1, 2021 or after (start date negotiable). Columbia University's Cognitive and Behavioral Economics Initiative is looking for a Postdoctoral Research Associate to join a team under the direction of Prof. Michael Woodford, that studies the cognitive foundations of economic decision making, using behavioral experiments and computational modeling. The program is especially interested in research that explores parallels between the cognitive mechanisms involved in perceptual judgments and in economic decisions. Projects may involve the perception of probability, value or risk; learning to forecast or categorize; the role of imprecise perception or memory in learning the values of actions; endogenous allocation of attention; sources of randomness in decisions; or context effects in choice behavior. Representative recent publications by our group include: Polania et al., Nature Neuroscience, 2019; Kobayashi et al., Nature Human Behavior, 2019; Heng et al., eLife, 2020; Woodford, Ann. Rev. Econ., 2020; Prat-Carrabin and Woodford, bioRXiv, 2020; Aridor et al., bioRXiv, 2020; and Khaw et al., Rev. Econ. Studies, forthcoming. *Minimum Qualifications:* a PhD in economics, psychology, computational neuroscience, computer science, or related field. A strong background in computational modeling is essential; prior experience running behavioral experiments is desirable. Familiarity with models of efficient coding and approximate Bayesian inference will be particularly useful. Columbia is an equal-opportunity employer, and we welcome applications from women or groups that have been under-represented in science. *To apply, please send a 1-2 page statement of research interests, a CV, copies of (or links to) one or two representative publications or preprints, and contact information for at least two references **to * *iserp-hiring(a)columbia.edu* <iserp-hiring(a)columbia.edu>*. Applications will be accepted until March 31, 2021, or until the position is filled.* Michael Woodford Columbia University

March 6, 2021

Researcher (Joint Position with NYU CNS), Center for Computational Neuroscience

by Serena Fuccillo

Researcher (Joint Position with NYU CNS), Center for Computational Neuroscience The Center for Neural Science (https://www.cns.nyu.edu/) at New York University (NYU), jointly with the Center for Computational Neuroscience (CCN) at the Flatiron Institute of the Simons Foundation, invites applications for an open rank joint position, with a preference for junior or mid-career candidates. We seek exceptional candidates that use computational frameworks and methods to develop concepts, models, and tools for understanding brain function. Areas of interest include sensory representation and perception, memory, decision-making, adaptation and learning, and motor control. During the academic year 2021-2022, the position will initially be a full-time position at NYU. Beginning academic year 2022-2023, the position will become a joint appointment between NYU and CCN, with the appointee spending half time in each location (both in lower Manhattan). The NYU position is a tenure-line faculty position at the Assistant, Associate, or full Professor level depending on the candidate’s background and experience. The holder of an Assistant level appointment will be considered for promotion to a tenured Associate professorship according to NYU's standard policies and procedures. The corresponding position at CCN may be Associate or Full Research Scientist, or Group Leader, again depending on candidate experience. The initial appointment is for three years, and is renewable, subject to satisfactory progress in research. A Ph.D. in a relevant field, such as neuroscience, engineering, physics or applied mathematics, is required. The responsibilities for this joint position include but are not limited to: establishing a research program with a significant computational component; participating in the international neuroscience research community; teaching at the undergraduate and graduate levels at NYU; contributing to the scientific culture and activities at the Flatiron Institute by collaborating with other researchers, hiring and supervising junior researchers, and assisting with the organization of CCN-related conferences, workshops, group seminars and summer programs. Review of applications will begin 28 March 2021. Important: in order to be considered for this joint appointment, candidates must submit their application in two places: To NYU at: https://apply.interfolio.com/83845 To CCN at: https://simonsfoundation.wd1.myworkdayjobs.com/en-US/simonsfoundationcareer… Application materials should include a brief cover letter, a statement describing current and planned research and teaching activities, a curriculum vitae including a list of publications, and names and contact information for three references. Because diversity and inclusion are an important part of the NYU mission, candidates should include a paragraph in their cover letter indicating how diversity and inclusion figure into their past, present, and future teaching, research, and community engagement. (Additional information can be found here: http://as.nyu.edu/departments/facultydiversity/recruitment/diversity-statem… ). All applications will be reviewed by a joint committee consisting of members from CNS and CCN. MINIMUM QUALIFICATIONS Education A successful candidate will have a Ph.D. in neuroscience, physics, engineering, applied mathematics or a related discipline. One or more years of postdoctoral research experience is desirable. Experience - Demonstrated abilities in establishing a neuroscience-related research program, embracing the opportunities offered by a joint position between NYU CNS and CCN. The research program must include a significant computational component. - A record of excellence in scientific publication. - Ability to teach effectively at both the undergraduate and the graduate level. - Strong oral and written communication skills, supporting collaboration and cooperation across traditional disciplinary boundaries. - Knowledge of software development and dissemination, either for scientific simulation, model fitting, experimental design, or analysis of modern high-throughput experimental data acquisition, is desirable. About NYU More information about NYU Center for Neural Science can be found at https://as.nyu.edu/content/nyu-as/as/departments/cns.html. The Faculty of Arts and Science at NYU is at the heart of a leading research university that spans the globe. We seek scholars of the highest caliber, who embody the diversity of the United States as well as the global society in which we live. We strongly encourage applications from women, racial and ethnic minorities, and other individuals who are under-represented in the profession, across color, creed, race, ethnic and national origin, physical ability, gender and sexual identity, or any other legally protected basis. NYU affirms the value of differing perspectives on the world as we strive to build the strongest possible university with the widest reach. To learn more about the FAS commitment to diversity, equality and inclusion, please read here. ( http://as.nyu.edu/content/nyu-as/as/administrative-resources/office/dean/di… <http://as.nyu.edu/administrative-resources/office/dean/diversity-initiative…>). EOE/Affirmative Action/Minorities/Females/Vet/Disabled/Sexual Orientation/Gender Identity. About the Flatiron Institute The Flatiron Institute (https://www.simonsfoundation.org/flatiron) is a major, new internal scientific unit of the Simons Foundation. It consists of five Centers – Astrophysics, Quantum Physics, Mathematics, Biology, and Neuroscience) each focused on the computational aspects of a particular area of basic science. It aims to generate original scientific discoveries, along with new computational infrastructure supporting and enabling such discoveries by the community at large. The newly formed Center for Computational Neuroscience aims to develop models, principles and conceptual frameworks that deepen our knowledge of brain function — both in health and in disease. CCN takes a “systems" neuroscience approach, building models that are motivated by fundamental principles, that are constrained by properties of neural circuits and responses, and that provide insights into perception, cognition and behavior. This cross-disciplinary approach not only leads to the design of new model-driven scientific experiments, but also encapsulates current functional descriptions of the brain that can spur the development of new engineered computational systems, especially in the realm of machine learning. Simons Foundation Diversity Commitment Many of the greatest ideas and discoveries come from a diverse mix of minds, backgrounds and experiences, and we are committed to cultivating an inclusive work environment. The Simons Foundation actively seeks a diverse applicant pool and encourages candidates of all backgrounds to apply. We provide equal opportunities to all employees and applicants for employment without regard to race, religion, color, age, sex, national origin, sexual orientation, gender identity, genetic disposition, neurodiversity, disability, veteran status, or any other protected category under federal, state and local law. Warm Regards, *Serena Fuccillo* Coordinator, Center Administration Center for Computational Neuroscience *FLATIRON INSTITUTE* 162 Fifth Avenue, 3rd Floor New York, NY 10010

March 5, 2021

Postdoc in machine learning at EPFL (Lausanne, Switzerland)

by Milekovic Tomislav

Postdoc position in the lab of Prof. Gregoire Courtine at EPFL (Lausanne, Switzerland) Machine learning techniques to develop and enhance clinical treatments based on electrical stimulation of the spinal cord Location: The laboratory of Prof. Gregoire Courtine at the Swiss Federal Institute of Technology (EPFL) in Lausanne, Switzerland, is looking to fill a fully funded postdoc position. The qualified candidate will benefit from joining a very dynamic and multidisciplinary group working at the interface of computational neuroscience, neuroengineering, prosthetics and biology. EPFL provides state-of-the-art facilities and is one of the leading technical universities worldwide. Postdoc salaries at EPFL rank the highest in the world. Opportunity: The offered position will be based at the Defitech Center for interventional Neurotherapies (NeuroRestore) - a research and innovation center joining EPFL’s lab of Prof. Gregoire Courtine and the University Hospital of Lausanne (CHUV) lab of Prof. Jocelyne Bloch. NeuroRestore conceives, develops and applies medical therapies aimed to restore neurological functions. To this end, NeuroRestore integrates implantable neurotechnologies with innovative treatments developed through rigorous preclinical and clinical studies. By working with our network of vibrant high-tech start-ups and established medical technology companies, NeuroRestore is committed to validate our medical therapy concepts. The overarching goal of NeuroRestore is to see our medical therapies used every day in hospitals and rehabilitation clinics worldwide. Description: Therapies based on epidural electrical stimulation (EES) of the spinal cord can restore the ability to walk to people paralyzed by spinal cord injury, and alleviate gait deficits of people with Parkinson’s disease. EES does this by recruiting sensory axons within dorsal spinal roots that enter the spinal cord between the vertebrae to increase the activation of the spinal motor pools that, in turn, move the muscles. Yet, the efficacy of the EES-based therapies relies on synchronizing users’ movement intentions with the spatiotemporal stimulation protocols that reliably and accurately generate paralyzed movements. Due to the large state space of all the stimulation parameters (location, amplitude, frequency, etc.) efficacy of the therapy depends on the fast and accurate initialization of the stimulation protocols. As the patients use the stimulation, small movements of the array, as well as changes in spine position due to users’ posture can reduce the usability of the stimulation. Stimulation efficacy can be enhanced by dynamically adjusting the stimulation protocols to changes to the way how to users’ spinal cord reacts to stimulation. Finally, the functional use of the stimulation largely depends on the accurate timing of stimulation delivery. Machine learning approaches that infer users’ intentions based on behavioral, physiological or neural recordings can vastly improve the synchronization between intended and therapy-supported movements and, therefore, play a critical role in achieving functional recovery of patients. While the current medical devices mostly support block-based stimulation protocols that remain constant for hundreds of milliseconds, upcoming devices will enable changes of stimulation at a millisecond resolution, thus opening a new field for machine learning approaches that exploit these capabilities. The successful candidate will work to develop, implement and apply machine learning algorithms and approaches to enhance EES-based therapies. Specifically, he will: * Design the mapping procedures for the generation of transfer functions that relate the continuously-controlled stimulation to the evoked muscle activity. * Develop algorithms that automatically adjust these transfer functions as the interaction between patients and their EES-based therapy evolves. * Implement machine learning techniques that utilize users’ behavioral, physiological and neural signals to continuously synchronize the delivery of stimulation with the users’ movement intentions. * Lead the team that develops machine learning methods to initialize and adjust block-based EES protocols. * Assist and oversee the development and implementation of machine learning methods that use inference of discrete motor events to synchronize block-based EES protocols with the users’ intentions. By integrating well-equipped and expertly staffed rodent, non-human primate and clinical research facilities, NeuroRestore provides an ideal substrate for rapidly developing, integrating and clinically validating cutting-edge machine learning concepts within medical therapies, with the capacity to push successfully proven concepts into the technology transition phase. The successful candidate will have access to these animal platforms and will work within the framework of multiple NeuroRestore clinical trials with people with spinal cord injury and Parkinson’s disease. They will benefit from the possibility of validating their concepts in animal experiments and implementing them within the therapies being tested in the clinical trials. Prerequisites: · Doctoral degree (PhD) · Proficiency in Python, Matlab and C++ · Strong background in quantitative data analysis · Experience with applying multiple machine learning techniques to behavioral, physiological, biological and/or neural datasets · Good written and verbal skills in English Contact: Applications including a CV and a cover letter describing your background and interest should be sent to tomislav.milekovic(a)epfl.ch<mailto:tomislav.milekovic@epfl.ch>. Informal inquiries are welcome.

March 5, 2021

INCF Assembly 2021: abstract submission open!

by Helena Ledmyr

Join us virtually for the 2021 INCF Assembly on April 19-27, with an exciting program <https://neuroinformatics.incf.org/2021/program> covering different aspects of FAIR neuroscience! Abstract submission <https://neuroinformatics.incf.org/abstract-submission> is open until March 31, and registration <https://neuroinformatics.incf.org/2021/registration> will open in late March. Members of INCF enjoy heavily discounted registration fees, which are already lowered due to the meeting being virtual this year. You can sign up for membership and see the other benefits here <https://www.incf.org/join-incf/individuals> - one year costs 20 USD for students and postdocs, and 50 USD for regular members. The INCF Assembly 2021 aims to provide the neuroscience community with approaches that can be used today to implement the FAIR principles in their research. It also aims to provide tool developers and infrastructure providers with an opportunity to interact with the user community and to interact with other practitioners to advance the field of neuroinformatics. The 2021 INCF Assembly will address topics around FAIR neuroscience such as: - FAIR approaches for neuroscience in general, neuroimaging, electrophysiology, and computational neuroscience - Electrophysiology and computational neuroscience - Data science - Showcase of tools and infrastructures - Open innovation and intellectual property - Information about ongoing work in INCF councils and committees - Funders and publishers roundtable - Workshops on developing standards and a roadmap for FAIR neuroscience The INCF Assembly is the only international meeting that focuses on providing researchers with hands-on training experiences and enabling interaction with software developers and infrastructure providers. We hope to see you online in April! ----------------------------- Helena Ledmyr, PhD *Director* *Development and Communications* International Neuroinformatics Coordinating Facility Secretariat Karolinska Institutet. Nobels väg 15A, SE-171 77 Stockholm. Sweden Email: helena.ledmyr(a)incf.org Phone: +46 8 524 870 35 incf.org neuroinformatics.incf.org

March 4, 2021

INCF/OCNS Software WG: Dev session on GeNN (9th March)

by Ankur Sinha

Hello everyone, Apologies for the cross-posts. The INCF/OCNS Software Working Group (WG)[1] is happy to announce the next "Dev session" on GeNN[2] where James Knight and Thomas Nowotny will introduce the software and then discuss its *development* pipeline. The session will be held on March 9 at 1700 UTC. Zoom link: https://universityofsussex.zoom.us/j/97956408800?pwd=by9yVnhCZTJlenY0bVI4OE… The aim of these sessions is to stimulate discussion of the development practices and tools used by different teams to improve the software we use while also improving our knowledge of these practices and tools. We also hope to encourage more users of these tools to contribute to their development to ensure their longevity. The abstract of the session is below: ----- Large-scale numerical simulations of brain circuit models are important for identifying hypotheses on brain functions and testing their consistency and plausibility. Similarly, spiking neural networks are also gaining traction in machine learning with the promise that neuromorphic hardware will eventually make them much more energy efficient than classical ANNs. In this dev session, we will present the GeNN (GPU-enhanced Neuronal Networks) framework [1], which aims to facilitate the use of graphics accelerators for computational models of large-scale spiking neuronal networks to address the challenge of efficient simulations. GeNN is an open source library that generates code to accelerate the execution of network simulations on NVIDIA GPUs through a flexible and extensible interface, which does not require in-depth technical knowledge from the users. GeNN was originally developed as a pure C++ and CUDA library but, subsequently, we have added a Python interface and OpenCL backend. The Python interface has enabled us to develop a PyNN [2] frontend and we are also working on a Keras-inspired frontend for spike-based machine learning [3]. In the session we will briefly cover the history and basic philosophy of GeNN and show some simple examples of how it is used and how it works inside. We will then talk in more depth about its development with a focus on testing for GPU dependent software and some of the further developments such as Brian2GeNN [4]. [1] https://github.com/genn-team/genn [2] https://github.com/genn-team/pynn_genn [3] https://github.com/genn-team/ml_genn [4] https://github.com/brian-team/brian2genn ----- If you develop software for neuroscience, we would love to hear about your development pipeline. Please get in touch with the Software WG either on INCF's Neurostars platform[4] or on our GitHub repository[5]. The WG is a community based group that is open to everyone at all levels of their careers (academic or otherwise). Please introduce yourself to the community on our channels to get involved. [1] https://ocns.github.io/SoftwareWG/pages/about.html [2] http://genn-team.github.io/genn/ [3] https://ocns.github.io/SoftwareWG/2021/02/26/dev-session-james-knight-thoma… [4] https://neurostars.org/t/ocns-infrastructure-software-tools-sig-meet-and-gr… [5] https://github.com/OCNS/SoftwareWG/discussions/12 On behalf of the WG, -- Thanks, Regards, Ankur Sinha (He / Him / His) Research Fellow at the Silver Lab | http://silverlab.org/ Department of Neuroscience, Physiology, & Pharmacology University College London, London, UK Time zone: Europe/London

March 4, 2021

Postdoc Opening on Information Dynamics inferred from in vivo electrophysiological recordings

by BATTAGLIA Demian

We are looking for a postdoctoral scholar to work at the interface between theoretical and experimental neuroscience in a cooperation between the groups of Christophe Bernard and Demian Battaglia at the Institute for Systems Neuroscience (INS) of Aix-Marseille University. The project will involve using information theoretical and machine learning tools and other computationally-intensive data analysis approaches on electrophysiological recordings of unit and LFP activity in rodents. In a recent series of works, we have been characterizing dynamics of "Information Processing states" and primitive processing operations of storage and sharing by individual hippocampal and cortical neurons in anesthesia, in both control and epileptic rodents (Clawson et al., Science Advances 2019; Pedreschi et al., Network Neuroscience 2020; Clawson et al., biorXiV 2021). We plan now to generalize these analyses to behavioral and very long sleep recordings, especially in relation to how circadian rhythms affect neural system function (Debsky et al., Science Advances 2020; Brancati et al., PNAS, in press) and performance. Indeed, although it is known that circadian rhythms drive all organ functions, including the brain, it is little known how the architecture of information processing by neuronal ensembles is affected by such rhythms. The ideal candidate will have a background in computational or theoretical neuroscience, physics or theoretical computer science. Familiarity with information theory concepts, previous experience in the analysis of large neuroscience datasets (e.g. multichannel recordings, unit or LFP data...) or the modelling of spiking neural circuits is a plus. The candidate will work with researchers performing in vivo recordings in control and epileptic animals (Christophe Bernard, Pascale Quilichini...) and theoreticians (Demian Battaglia, Viktor Jirsa...) at the Institute of Systems Neuroscience in Marseille. Interactions are possible also with other French labs (e.g. University of Strasbourg) and with clinicians. If interested, the candidate will also be offered the possibility to learn in vivo electrophysiology. Aix-Marseille University is a large, international university with a rich and diverse Neuroscience community, in the vibrant multicultural city of Marseille with magnificent natural surroundings and excellent high-speed train and flight connections to major cities in Europe. The position has no mandatory teaching or administrative duties. Excellent (written and oral) communication skills in English are required. The maximum duration is three years. Candidates should send a CV, a statement of research experience and interests, expected date of availability, and the contact information for three references to christophe.bernard(a)inserm.fr and demian.battaglia(a)univ-amu.fr Application review will proceed until the position is filled. References Clawson, W., Vicente, A.F., Ferraris, M., Bernard, C., Battaglia, D., Quilichini, P.P., 2019. Computing hubs in the hippocampus and cortex. Sci Adv 5, eaax4843. doi:10.1126/sciadv.aax4843 Pedreschi, N., Bernard, C., Clawson, W., Quilichini, P., Barrat, A., Battaglia, D., 2020. Dynamic core-periphery structure of information sharing networks in entorhinal cortex and hippocampus. Netw Neurosci 4, 946–975. doi:10.1162/netn_a_00142 Clawson, W., Madec, T., Ghestem, A., Quilichini, P.P., Battaglia, D., Bernard, C., 2021. Disordered information processing dynamics in experimental epilepsy. bioRxiv. doi:10.1101/2021.02.11.430768 Debski, K.J., et al.... , Bernard, C., 2020. The circadian dynamics of the hippocampal transcriptome and proteome is altered in experimental temporal lobe epilepsy. Sci Adv 6. doi:10.1126/sciadv.aat5979 Demian Battaglia CNRS researcher - Institute for Systems Neuroscience (INS) Theoretical Neuroscience Group - Aix-Marseille Université & Visiting fellow - University of Strasbourg Institute for Advanced Studies (USIAS) @Laboratory for Cognitive and Adaptive Neurosciences (LNCA)

March 4, 2021

Comp Neuro PhD Position at Moreno-Bote lab, Barcelona

by Ruben Moreno Bote

*PhD Position in* *Computational Neuroscience, Ruben Moreno-Bote Lab * *Center for Brain and Cognition, University Pompeu Fabra, Barcelona, Spain* 1 fully funded PhD position is available in the group of Theoretical and Cognitive Neuroscience of Ruben Moreno-Bote in the Center for Brain and Cognition at the University Pompeu Fabra, Barcelona, Spain. We are looking for excellent candidates with Physics, Mathematics or Machine Learning background interested in developing theory for the brain and mind. Knowledge of Computational Neuroscience or Neuroscience would be ideal, but it is not necessary. The candidate will develop state of the art theory and models of cognition and intelligence by using neural networks, reinforcement learning, machine learning, data analysis and multielectrode neural data. The main research topic of our lab is decision-making, from a multidisciplinary angle. The candidate will benefit from the stimulating environment of Barcelona area in Theoretical and Systems Neuroscience and will have the opportunity of enjoying a lively city. Our lab (https://www.upf.edu/web/tcn) forms part of a larger network of neuroscience labs in Barcelona. Financial support is provided by HHMI, ICREA and the Spanish MINECO. APPLICATION: A full CV in pdf format and an extract of grades for degree and master studies should be sent to the following address: ruben.moreno(a)upf.edu DEADLINE: until the position is filled STARTING DATE: any time between September 2021 and January 2022 -- Rubén Moreno Bote Serra Húnter & ICREA Academia Professor Center for Brain and Cognition & Dept. of Information and Communications Technologies University Pompeu Fabra Campus Ciutadella c\ Ramon Trias Fargas, 25-27 Mercè Rodoreda building, 3th floor (room 24.331) 08005 Barcelona, Spain https://www.upf.edu/web/tcn https://twitter.com/morenobote <https://twitter.com/morenobote?lang=ca>

March 4, 2021

research fellow: open and reproducible science core facility

by Jochem Rieger

We have an open research fellow position (salary at post-doctoral level) for 3+2 years at the Neuroimaging Unit of Uni Oldenburg for the development of tools and infrastructure for open data data and reproducible science based on the BIDS standard. The position complemented by a full time technician position for support. The announcement is below. Please contact me if you have questions. The application deadline is March 12th We are looking forward to applications, Jochem *Scientific Research Associate m/f/d* *(Salary level E13 TVL, 100%)* ** for the development of acquisition, storage and processing pipelines for open and reproducible science building on the BIDS standard. In a newly funded project we aim to implement data storage and processing pipelines for open and reproducible science based on the BIDS standard. The successful candidate is expected to actively contribute to the implementation of neuroscience data acquisition, storage, and reproducible analysis pipelines building on the BIDS standard at the University of Oldenburg, to contribute to community efforts and dissemination. Candidates are expected to have an academic university degree (Master or equivalent) in the field of informatics, engineering, neuroscience or psychology and have shown their ability to perform excellent scientific work, e.g. demonstrated by an excellent publication record. Prior experience with the BIDS standard as well as its programming, experience with neuroimaging techniques and data analysis (especially fMRI or MEG/EEG) and fluency in English is required. Experience with open science tools and databases, other neurophysiological modalities, as well as knowlegde of German are desirable. The position is embedded in a DFG Core Facility grant and is availableas soon as possibleuntil30^th of September^.2023 (with the possibility to extend another two years after successful project evaluation). The position is suitable for part-time work. The Neuroimaging Unit hosts a state of the art MEG (Elekta Triux) and an MRI (Siemens Prisma 3T) and is embedded in an excellent interdisciplinary scientific environment with a strong research focus on neurosensory, neurocognitive, and medical research. The University of Oldenburg is dedicated to increase the percentage of female employees in the field of science. Therefore, female candidates are strongly encouraged to apply. In accordance to § 21 Section 3 NHG, female candidates with equal qualifications will be preferentially considered. Applicants with disabilities will be given preference in case of equal qualification. Please send your application including a cover letter, CV, list of potential referees, links to recent publications and copies of certificates for academic grades to Prof. Jochem Rieger, Department of Psychology, University of Oldenburg, 26111 Oldenburg, Germany (jochem.rieger(a)uol.de <mailto:jochem.rieger@uol.de>). Electronic applications (*one*pdf file) are preferred. For inquiries please use the same contact. The application deadline is*12^th of**March 2021*. -- Prof. Dr. rer. nat. Jochem Rieger Head of Applied Neurocognitive Psychology head of Neuroimaging Unit Faculty VI Carl-von-Ossietzky University 26111 Oldenburg Germany Phone: +49(0)4417984533 Fax: +49(0)4417983865

March 4, 2021

Announcing 3 NeuroML hackathon sessions at HARMONY 2021

by Padraig Gleeson

*[Apologies for cross-posting]* ** ** *We will be running 3 online NeuroML <https://neuroml.org/> hackathon sessions during the upcoming HARMONY 2021 <http://co.mbine.org/events/HARMONY_2021>meeting on 23-25th March. * ** ** *The general theme of the sessions will be: Learn to build, visualise, analyse and simulate your models using NeuroML.* * Why take part? These hackathons will give members of the modelling community the chance to: * Get high level introductions to the NeuroML language and toolchain * Meet the NeuroML core development team and editors * Find out the latest information on which simulators/applications support NeuroML * Open, discuss and work on issues related to converting your model to NeuroML, or supporting NeuroML in your simulator * Learn how to share your models with the community Times and dates All sessions will be online and take place over 3 hours (9am-noon Pacific; 12-3pm EST time; 4-7pm UK/UTC; 5-8pm CET, 9:30pm-12:30am IST; note non-standard US/EU time differences that week). The broad focus of each of the sessions (dependent on interests of attendees) is: **Tues 23rd March: Introduction to NeuroML, general questions about usage **Wed 24th March: Detailed cell/conductance based models (e.g. converting channels to NeuroML) **Thus 25th March: Abstract/point neuron networks including PyNN interactions Registration To take part in the hackathon, please register at http://co.mbine.org/events/HARMONY_2021 <http://co.mbine.org/events/HARMONY_2021>for the HARMONY meeting (registration is free). You will get sent details to access the agenda on https://harmony2021.sched.com, which will have links to the Zoom sessions for each of the days. Open an issue beforehand! While it will be possible to raise and discuss new issues at the hackathons, it will be easier to manage and plan work/discussions if you open an issue with a description of the problem you are trying to address at: https://github.com/NeuroML/NeuroML2/issues <https://github.com/NeuroML/NeuroML2/issues>. Slack To aid communication with the community during (and after) the meeting, we have a Slack channel for NeuroML related discussions. Please reply to this mail for an invite. We look forward to working with the community to drive further uptake of NeuroML compliant models and tools! * ----------------------------------------------------- Padraig Gleeson Room 321, Anatomy Building Department of Neuroscience, Physiology& Pharmacology University College London Gower Street London WC1E 6BT United Kingdom +44 207 679 3214 p.gleeson(a)ucl.ac.uk -----------------------------------------------------

March 3, 2021

Two postdoctoral fellow positions in theoretical neuroscience

by Yoram Burak

The Burak Lab at the Hebrew University and the Moser lab at the Kavli Institute for Systems Neuroscience (KISN) are seeking two postdoctoral fellows in theoretical neuroscience, to take part in a joint ERC-funded project. The project aims to identify how thousands of neurons in the mammalian cortex interact with each other to achieve computational and cognitive functions. Theory fellows taking part in the project will work on diverse theoretical and computational questions, which involve approaches ranging from pure theoretical modelling to analysis and interpretation of large scale neural data. Computational tools involve methods from nonlinear dynamics, machine learning, statistical physics, and information theory. The two theory postdoctoral fellows will be based in Jerusalem, and are expected to interact closely with members of both labs, both remotely and during visits to the KISN in Trondheim. A generous budget will be available for travel between Israel and Norway, for travel and participation in scientific meetings, and for purchase of computing equipment. We are looking for candidates with excellent demonstrated abilities in theoretical research, strong intellectual curiosity and drive, a keen interest in computational neuroscience, and an interest in relating theory to experimental data. A strong research record in theoretical neuroscience, theoretical physics, mathematics, computer science, or a related field is required. Experience with research related to machine learning, statistical physics, nonlinear dynamics, information theory, or large-scale data analysis, as well as prior familiarity with research in computational neuroscience are advantageous. *To apply:* Please send the following information to kiloneurons-positions(a)elsc.huji.ac.il in a single PDF file: 1. Curriculum vitae 2. List of publications 3. Brief statement of research interests 4. The names and contact details of three references *Deadline*: For full consideration, applications must be received by March 31, 2021. After this date, if positions are not filled, applications will be considered on a rolling basis. ___ Yoram Burak Associate Professor Racah Institute of Physics, and Edmond and Lily Safra Center for Brain Sciences The Hebrew University of Jerusalem p: +972-2-6584523 w: https://www.buraklab.me/ a: Goodman Brain Sciences Bldg 2102, Safra Campus, Jerusalem 91904, Israel

March 3, 2021

IMRF (International Multisensory Research Forum) postponed to July 04-07 2022 in Ulm, Germany

by Marc Ernst

Dear participants of the IMRF, Unfortunately, the COVID-19 pandemic situation is still affecting all our lives and the prediction for summer 2021 does not look like it will allow all of us travelling internationally without restrictions or holding a meeting in closed spaces with many people present. As many other conferences, we also considered moving to an online format for the International Multisensory Research Forum (IMRF) (https://cops.ifp.uni-ulm.de/imrf2020/ <https://cops.ifp.uni-ulm.de/imrf2020/>). However, we feel the community would not benefit as much as having a meeting in person. Therefore, with a heavy heart we decided once again (and hopefully for the last time) to postpone the „annual“ IMRF meeting. The new dates are July 04-07, 2022. Abstract submission and registration will stay open. All abstracts already submitted will be further considered. However, you can of course log on and adapt your abstracts (or symposia) until the new deadline for abstract submission. We will announce the new deadlines in due time. The abstract submission and registration page can be found here <https://cops.ifp.uni-ulm.de/imrf2020/index.php/imrf-2020/registration-submi…>. Also registrations will stay valid in case you already registered. Otherwise new registration dates will be announced shortly. Sorry for the inconvenience this third postponement may cause and thanks for your understanding. Be safe and stay healthy!!!! Best, Mac Ernst on behalf of the IMRF Organizers. --------------------------------------------------------- Prof. Dr. Marc Ernst Appl. Cognitive Psychology Faculty for Computer Science, Engineering, and Psychology Ulm University Albert-Einstein-Allee 43 89081 Ulm room: 43.3.103 phone: +49-731-50 320 50 sekr: +49-731-50 320 51 fax: +49-731-50 320 59 mobile: +49-152-22 543 156 marc.ernst(a)uni-ulm.de <mailto:marc.ernst@uni-ulm.de>

March 3, 2021

PhD in ML and AI - VC Scholarships

by Konstantin Nikolic

The Vice-Chancellor Scholarships for one or more PhD positions in Machine Leaning is available in the “Bio-Inspired Modelling and Technology” group of Prof Konstantin Nikolic at University of West London, UK. The group’s interests are mostly in modelling biological systems and AI/ML related to bio-inspired themes. Potential project topics include: Learning in Spiking Neural Networks (SNNs), Neuromorphic robots controlled by SNNs (available are SpiNNaker boards, Dynamic Vision Sensors, etc, for example see: https://www.youtube.com/watch?v=135fH21QXtg) Data-driven ML algorithms based on information theory and their applications (such as medical diagnostics, video/image analysis, financial/economic or some other large dataset analysis), Neural microcircuits of learning and cognitive modelling, etc. We are also interested in developing ML algorithms for controlling neuromodulatory implants. Research related to Theoretical and Computational neuroscience could be also interesting, especially if exploring some new ideas related to learning in relatively simple biological systems. The researchers will be based in the School of Computing and Engineering at University of West London, with close collaboration with the Centre for Bio-Inspired Technology at Institute of Biomedical Engineering, Imperial College London. The School enjoys state-of-the-art facilities and infrastructure and continues to invest heavily in its improvement. The life on campus is enriched with high-quality live performances and plays given by the students from our London College of Music and London School of Film, Media and Design, the two hubs of talent and creativity. If interested, please send your CV with a brief description of your research interests or a potential project directly to me: konstantin.nikolic(a)uwl.ac.uk<mailto:konstantin.nikolic@uwl.ac.uk>. All applicants will eventually have to formally apply through the standard UWL mechanism. Applications will be considered as they arrive, but earlier applications typically have a higher chance of getting a funded place, and EU applicants in particular should apply immediately. The next PhD cohort at UWL starts in May 2021. Konstantin Nikolic, PhD Professor in Computer Science – AI, ML and Data | University of West London Visiting Professor | Imperial College London University of West London School of Computing and Engineering| Room BY.03.019|St Mary’s Road | London W5 5RF|UK email: konstantin.nikolic(a)uwl.ac.uk<mailto:konstantin.nikolic@uwl.ac.uk> , k.nikolic(a)imperial.ac.uk<mailto:k.nikolic@imperial.ac.uk> web: https://www.uwl.ac.uk/users/konstantin-nikolic; https://www.imperial.ac.uk/people/k.nikolic

March 2, 2021

Job Opening in Juelich, Germany: Postdoc in Computational Neuroscience - Priority Program 2041Computational Connectomics

by Martina Reske

The Institute of Neuroscience and Medicine (INM) at the Jülich Research Center in Germany investigates the structure and function of the brain. The subinstitute INM-6 consists of 6 groups that conduct research in the field of computational and systems neuroscience. The Priority Program "Computational Connectomics" is a Germany-wide collaboration aiming at comprehensive descriptions of neuronal network connectivity and insight into its relationships to brain dynamics and function. The candidate will strengthen our team in the project “Cellular, connectional and molecular heterogeneity in a large-scale computational model of the human cerebral cortex”, which is embedded in the context of the Priority Program. It will be supervised by Prof. Sacha van Albada and is a collaboration with Dr. Alexandros Goulas (UKE Hamburg) and Dr. Timo Dickscheid (INM-1, Jülich Research Center). This collaboration links cytoarchitecture (Dr. Dickscheid) to connectomics (Dr. Goulas) and finally cortical network dynamics (Prof. van Albada). Simulations using the neural network simulation tool NEST on the Jülich supercomputers provide the unique opportunity for investigating spiking cortical models at the full density of neurons and synapses. We are looking to recruit a Postdoc in Computational Neuroscience - Priority Program 2041 Computational Connectomics Your Job: * Extending and refining a large-scale spiking neural network model of human cerebral cortex * Investigating the origins of area- and layer-specific cortical timescales and oscillations * Supervising PhD and Master students * Maintaining active collaborations with project partners * Writing, documenting, and publishing high-quality simulation, analysis, and visualization scripts * Presenting project results at national and international conferences * Publishing project results in peer-reviewed international journals Your Profile: * Completed study (Master) in natural sciences, computer science or mathematics * PhD in computational neuroscience * Extensive experience with neural network simulations and analytical mean-field theory * Excellent knowledge of cortical anatomy and physiology * Structured and organized style of working * Fluent in English, spoken and written * Ability to work independently * Good social and student supervision skills * Willingness to travel Our Offer: We work on the very latest issues that impact our society and are offering you the chance to actively help in shaping the change! We support you in your work with: * Comprehensive training courses and individual opportunities for personal and professional further development * Extensive company health management * Ideal conditions for balancing work and private life, as well as a family-friendly corporate policy * Full-time position with the option of slightly reduced working hours and 30 days of annual leave * Targeted services for international employees, e.g. through our International Advisory Service We offer you an exciting and varied role in an international and interdisciplinary working environment. The position is initially for a fixed term of 1 year, with possible long-term prospects. Salary and social benefits in conformity with the provisions of the Collective Agreement for the Civil Service (TVöD). Depending on the applicant`s qualifications and the precise nature of the tasks, salary grade 13 TVöD-Bund. Forschungszentrum Jülich promotes equal opportunities and diversity in its employment relations. We also welcome applications from disabled persons. Please apply via our online recruiting system<https://www.hrecruiting.de/obf2/bewerbermanagement.php?kunden_nr=t5ChjatkIf…>, quoting the reference number 2021-091. Martina Reske -- Dr. Martina Reske Scientific Coordinator Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience Jülich Research Centre and JARA Jülich, Germany Work +49.2461.611916 Work Cell +49.151.26156918 Fax +49.2461.619460 www.csn.fz-juelich.de<http://www.csn.fz-juelich.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

March 2, 2021

[job] Postdoctoral Researcher on fMRI study of spontaneous thoughts and natural task

by Mingbo Cai

Postdoctoral Researcher on fMRI study of spontaneous thoughts and natural tasks We seek a talented neuroscientist with extensive experience in the areas of advanced fMRI analysis, (such as encoding or decoding models) and the design of experiments using naturalistic tasks and assessing spontaneous thoughts. A 3-year postdoctoral position is available at Dr. Mingbo Cai’s lab at the International Research Center for Neurointelligence, The University of Tokyo. You will work on an exciting international collaboration project co-funded by AMED of Japan and DFG of Germany directed by both Dr. Cai <https://cailab-ircn.org/> and Dr. Nicolas Schuck <https://schucklab.gitlab.io/> at Max Planck Institute for Human Development. You will also have the opportunity to collaborate remotely with Dr. Quentin Huys <https://quentinhuys.com/> at the University College London. The project will focus on understanding the contents and dynamics of spontaneous thoughts using fMRI decoding and natural tasks. In the later stage of the project, we also plan to examine the clinical implication of differences in spontaneous thoughts. Applicants with experience working on populations with mental disorders are also highly encouraged to apply. The working language is English. The working location is at The University of Tokyo, Japan. Contract duration: renewed annually up for 3 years, with a probation period of 6 months. Starting date: On or after April 1, 2021. *Requirements* (1) Applicants must hold, or be expected to hold by the time of appointment, a PhD, M.D. or equivalent degree in Neuroscience, Psychology, Psychiatry, Machine Learning, Statistics or related fields. (2) Experience in conducting fMRI experiments and data analysis (evidenced by publications, conference presentations or writing samples). (3) Familiar with at least one of the following tools: AFNI, FSL, nilearn, BrainIAK. (4) Good speaking and scientific writing skills in English. (5) Good programming skills. (6) Willing to collaborate and help colleagues. Requirements 2 and 3 may be replaced by two or three of the preferred skills below: *Preferred skills:* (1) Research experience with fMRI experiments involving natural tasks and multivariate pattern analysis. (2) Experience with experiments investigating spontaneous thoughts. (3) Research experience with investigations of psychiatric disorders. (4) Knowledge of and experience with deep learning. *Application procedure:* Please send an email with title “[Postdoc Application] + your name” to mingbo.cai(a)ircn.jp. Please include a cover letter describing your background and research interest, a curriculum vitae, and contact information for 2-3 recommendation letters (ideally you can also request your referees to send their letters directly to the above email address). To increase the chance of being considered, we suggest you include writing samples or a copy of a poster. Informal inquiry can also be sent to Dr. Cai. *Application deadline:* The first deadline is March 31. The position will remain open until filled. We encourage early application as the review can start before the deadline. Mingbo Cai Principal Investigator International Research Center for Neurointelligence The University of Tokyo https://cailab-ircn.org/ Mingbo Cai

March 2, 2021

WorldWideNeuRise online seminar series on inter-areal communication

by William Podlaski

WorldWideNeuRise is an online seminar series affiliated with WorldWideNeuro and eLife which aims to give early career researchers a chance to share their work. We will have several talks throughout March-April on the topic of inter-areal communication from the following speakers: Wednesday, 3 March, 5pm CET Arseny Finkelstein (Svododa lab, Janelia HHMI) Wednesday, 10 March, 5pm CET Aleena Garner (Keller lab, Friedrich Miescher Institute) Kelly Clancy (Mrsic-Flogel lab, University College London) Wednesday, 24 March, 5pm CET Matthew Perich (Rajan lab, Mount Sinai) Evren Gokcen (Yu lab, Carnegie Mellon University) Wednesday, 7 April, 5pm CET Monique Smith (Malenka lab, Stanford University) Adi Kol (Goshen lab, Hebrew University of Jerusalem) Wednesday, 21 April, 5pm CET David Tingley (Buzsáki lab, New York University) Javad Karimi Abadchi (Mohajerani & McNaughton labs, University of Lethbridge) For more information, please visit our website (https://neurise.github.io/) find us on WorldWideNeuro (https://www.world-wide.org/Neuro/WWNeuRise/) or follow us on Twitter (https://twitter.com/WWNeuRise) We are looking forward to seeing you there! The organising committee, Ellen Boven (Apps lab, U Bristol) Christina Buetfering (Häusser lab, U College London) Lucie Descamps (Kentros lab, NTNU) Gily Ginosar (Ulanovsky lab, Weizmann Institute) Loreen Hertäg (Sprekeler lab, TU Berlin) Joram Keijser (Sprekeler lab, TU Berlin) Bill Podlaski (Machens lab, Champalimaud)

March 1, 2021

Registration open for the second Canadian Computational Neuroscience Spotlight (CCNSv2)

by Scott Rich

Dear Comp-Neuro Mailing List, Last year, the Canadian Computational Neuroscience Spotlight <https://www.crowdcast.io/e/CCNS/register> (CCNS) was one of the first neuroscience conferences to successfully transition into the virtual space <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008…> due to the COVID-19 pandemic, with more than 450 registrants from across the globe. Given the overwhelmingly positive feedback we received from this first meeting, we are excited to announce a “v2” of the conference will take place this coming May 17-18, and registration is now open <https://www.crowdcast.io/e/ccnsv2/register>. We are hoping that you will not only register for the meeting, but advertise it via email listservs, social media, and any other avenues you deem appropriate. CCNSv2 will feature four sessions chaired by internationally recognized computational neuroscientists on topics that bridge the multiple scales at which neuroscience research, both computationally and experimentally, is performed. Three of our four chairs are currently confirmed: *Dr. Etay Hay* of the Krembil Centre for Neuroinformatics, *Dr. Maurizio de Pitta *of the Basque Center for Applied Mathematics, and *Dr. Bratislav Misic* of McGill University. As CCNS was designed as a “trainee focused” meeting, each session will begin with a tutorial talk in which a topic of importance will be introduced for a broad audience. We also will host two panel discussions, one with experienced computational neuroscience researchers and the other with ECRs and current trainees, to provide a forum for trainees to ask questions of scientists at various stages of their careers. We invite all trainees to submit an abstract <https://docs.google.com/forms/d/e/1FAIpQLSdCRPkDuPdoS3M7PISDITXfB__rWDiFEi9…> to give a “trainee talk” at the meeting. We anticipate accepting all applications that reasonably fall under the broad banner of computational neuroscience unless the demand far exceeds our expectations. We will also provide an additional spotlight to four talks that are both the most meritorious and best fit with the focused themes of the meeting. Please do not hesitate to contact us if you have any further questions regarding this meeting or manners of advertising it. We look forward to seeing you at CCNSv2! Sincerely, The CCNS Organizing Committee Scott Rich <http://scottrich.strikingly.com/>, Ph.D.: Postdoctoral Research Fellow, Krembil Research Institute Andreea Diaconescu <https://cognemo.com/>, Ph.D.: Independent Scientist, Krembil Center for Neuroinformatics at CAMH John Griffiths <https://t.co/AlUQymEUae?amp=1>, Ph.D.: Independent Scientist, Krembil Center for Neuroinformatics at CAMH Milad Lankarany <https://sites.google.com/view/lnsbsp/home>, Ph.D.: Scientist, Krembil Research Institute

March 1, 2021

Computational Brain Reimagined

by Aurel A. Lazar

In recent years, the growing wealth of Drosophila neuroscience data have become available including cell type and connectome/synaptome datasets for both the larva and adult fly. To facilitate integration across data modalities and to accelerate the understanding of the functional logic of the fruit fly brain, we have developed FlyBrainLab, a unique open-source computing platform that integrates 3D exploration and visualization of diverse datasets with interactive exploration of the functional logic of modeled executable brain circuits. For a brief description, see the eLIFE paper: "Accelerating with FlyBrainLab the Discovery of the Functional Logic of the Drosophila Brain in the Connectomic Era”, February 2021, https://elifesciences.org/articles/62362 Further details are available on the Fruit Fly Brain Observatory website at https://www.fruitflybrain.org/#/ <https://www.fruitflybrain.org/#/> Here you will find guides to a wealth of fruit fly brain datasets and libraries to interactively explore circuit models. Check out "Exploring the Fruit Fly Brain Observatory” at https://www.fruitflybrain.org/#/posts/explore_ffbo <https://www.fruitflybrain.org/#/posts/explore_ffbo> and the links to open source code posted on Github: https://www.fruitflybrain.org/#/posts/resources <https://www.fruitflybrain.org/#/posts/resources> Best, Aurel http://www.bionet.ee.columbia.edu

March 1, 2021

Modellers Workshop for the Brain Dynamics Toolbox

by Stewart Heitmann

Modeller’s Workshop for the Brain Dynamics Toolbox Online Course. Enrolments open 1-20 March 2021. This is a practical self-paced course for researchers and students who wish to program their own dynamical models using the Brain Dynamics Toolbox (bdtoolbox.org<https://bdtoolbox.org/>). Participants learn the art of programming differential equations and how to use the toolbox to solve those equations interactively. Topics include programming Ordinary Differential Equations, Partial Differential Equations, Delay Differential Equations, Stochastic Differential Equations, Auxiliary Plot Functions and command-line tools. Example code is provided in all cases. Course Website https://bdtoolbox.org/p/modellers-workshop/ Important Dates Early-bird enrolments ($125) close Sunday 6th March, 2021. Late enrolments ($150) close Saturday 20th March, 2021. Stewart Heitmann Disclaimer The information contained in this communication from the sender is confidential. It is intended solely for use by the recipient and others authorized to receive it. If you are not the recipient, you are hereby notified that any disclosure, copying, distribution or taking action in relation of the contents of this information is strictly prohibited and may be unlawful. This email has been scanned for viruses and malware, and may have been automatically archived by Mimecast Ltd, an innovator in Software as a Service (SaaS) for business. Providing a safer and more useful place for your human generated data. Specializing in; Security, archiving and compliance. To find out more visit the Mimecast website.

Feb. 28, 2021

[CFP] Submission deadline extended to Mar 5: ICLR Workshop on How Can Findings About The Brain Improve AI Systems?

by Mariya Toneva

ICLR 2021 - Workshop on "How Can Findings About The Brain Improve AI Systems?" Submission deadline: extended to March 5, 2021 Workshop website: https://iclrbrain2ai.github.io/ Contact: brain2ai.2021(a)gmail.com We will consider the following (non-exhaustive) list of topics for contribution: - Integration of neuroscientific data at different granularities (neural recordings, neuroimaging etc.) to train AI systems - Brain-inspired inductive biases and ML architectures for AI systems - Neuroscientific data as an evaluation metric for AI systems - Mechanistic insight into cognitive functions (vision, language, decision making, attention, etc.) - Limitations of current AI systems in tasks at which humans excel (compositionality, commonsense reasoning, continual learning, few-shot learning, causality, etc.) - Cross-modality and cross-species comparisons of neuroscientific data with respect to benefits to AI - Datasets that can facilitate the transfer of neuroscientific insight to AI Submit at: https://cmt3.research.microsoft.com/BRAIN2AI2021/Submission/Index The workshop will feature a diverse set of topics led by the following invited speakers and panelists (in alphabetical order): 1. Anima Anandkumar, California Institute of Technology 2. David Cox, Harvard University 3. Kenji Doya, Okinawa Institute of Science and Technology Graduate University 4. Allyson Ettinger, University of Chicago 5. Alona Fyshe, University of Alberta 6. Jack Gallant, University of California, Berkeley 7. Andrea Martin, Max Planck Institute for Psycholinguistics 8. Kim Stachenfeld, DeepMind 9. Josh Tenenbaum, MIT

Feb. 28, 2021

Postdoctoral Fellow/Research Associate position in the Theoretical and Computational Neuroscience group at Drexel University

by Ilya Rybak

The Theoretical and Computational Neuroscience group at the Department of Neurobiology and Anatomy, Drexel University College of Medicine, Philadelphia, PA (https://drexel.edu/medicine/about/departments/neurobiology-anatomy/research…) has an open Postdoctoral Fellow/Research Associate position in computational neuroscience to work on computational modeling of neural circuits in the brainstem and spinal cord involved in the neural and biomechanical control of mammalian locomotion. The modeling studies in the group are performed in close, interactive collaborations with several leading laboratories in the US, Canada and Europe performing the related experimental investigations, as well as with several investigators and groups focusing on control of legged robot locomotion. The successful applicant should have strong programming skills, some background in neuroscience and experience in modeling of biological neurons and neural networks. Some mathematical background is desirable. An experience in computational modeling of biomechanics is a plus. If you are interested, please email your CV, statement of research interest, and names of three references to Ilya Rybak (rybak(a)drexel.edu<mailto:rybak@drexel.edu>). The position will remain open until filled. ================================= Ilya A. Rybak, Ph.D. Professor Department of Neurobiology and Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 USA Tel.: (215) 991-8596 Email: rybak(a)drexel.edu https://pubmed.ncbi.nlm.nih.gov/?term=rybak+IA&sort=date <https://www.researchgate.net/profile/Ilya_Rybak/publications/> http://scholar.google.com/citations?hl=en&user=SnA068QAAAAJ http://rybak-et-al.net http://www.drexel.edu/medicine/About/Departments/Neurobiology-Anatomy/Resea…

Feb. 26, 2021

Job opening in Juelich, Germany: Coordinator Software Development -, Neuronal Data Analysis Tools

by Martina Reske

The Institute of Neuroscience and Medicine (INM) at the Jülich Research Center in Germany investigates the structure and function of the brain. The subinstitute Computational and Systems Neuroscience (INM-6) consists of 6 groups that conduct research in the field of computational and systems neuroscience. The Statistical Neuroscience group headed by Prof. Sonja Grün develops computational methods to analyze the joint activity of neuronal networks, and applies these methods to experimental data in the context of international collaborations. As part of the group, the team for Data Science in Electro- and Optophysiology Behavioral Neuroscience, headed by Dr. Michael Denker, develops software tools and processes to support reproducible data acquisition, analysis and model validation using state-of-the-art approaches from neuroinformatics in the spirit of co-design with scientists and closely integrated with the EBRAINS services of the Human Brain Project. To strengthen our international and interdisciplinary team we are looking to recruit a Coordinator Software Development - Neuronal Data Analysis Tools Your Job: * Agile development, maintenance, coordination and distribution of the open-source Elephant analysis software (python-elephant.org) and closely related software tools, including handling inquiries and contributions via issue systems and similar channels * Design of implementations of library features and statistical analysis tools for neuronal data * Development of solutions for software packaging, including deployment on HPC systems * Maintenance and improvement of the interactive software documentation, including content for the presentation of the software on the web and on social media * Parallelization of analysis codes using modern technologies * Development of a service-based architecture for analysis tasks * Review and evaluation of software contributions from a world-wide community with respect to scientific content, the code maturity, and the possibility to be integrated into the Elephant software * Co-design and dissemination of generic conceptual guidelines and project-specific implementations for scientific workflows * Close interaction with developers of EBRAINS and across the globe * Representing the technology at scientific conferences, during educational courses, to the public, and within the framework of the EU Flagship Project “Human Brain Project” Your Profile: * Completed study (Master) in natural sciences, computer science or mathematics * Very good expertise in the programming languages Python and C/C++; knowledge of Matlab and web-based technologies (e.g., javasscript); experience with parallelization techniques (e.g., MPI) and in the standard Linux tools; experience in web-based services for managing software (version control, issue tracking, CI,…) * Experience in implementing scientific analysis methods and creating documentation and course material * Experience in maintaining open source software projects * High ability to work in an interdisciplinary, international team * Structured and organized style of working * Fluent in English, spoken and written * Ability to work independently, systematically and on one’s own responsibility * Good communication skills with software developers and scientists * Willingness to travel Note that it is not necessary to fulfil all of these requirements in order to be considered for the position Our Offer: We work on the very latest issues that impact our society and are offering you the chance to actively help in shaping the change! We support you in your work with: * A position in a creative and international team that conducts research at the frontiers of science, themes ranging from computational neuroscience to simulation technology * World class science environment at the interface between neuroscience and technology on the most complex known systems * Excellent scientific equipment including the fastest supercomputer in Europe * Comprehensive training courses and individual opportunities for personal and professional further development * Extensive company health management * Ideal conditions for balancing work and private life, as well as a family-friendly corporate policy * Flexible working hours and 30 days of annual leave * Targeted services for international employees, e.g. through our International Advisory Service We offer you an exciting and varied role in an international and interdisciplinary working environment. Limited until 31.03.2023, with possible long-term prospects. Salary and social benefits in conformity with the provisions of the Collective Agreement for the Civil Service (TVöD). Depending on the applicant`s qualifications and the precise nature of the tasks, salary grade 13-14 TVöD-Bund. Forschungszentrum Jülich promotes equal opportunities and diversity in its employment relations. We also welcome applications from disabled persons. We look forward to receiving your application until 28.03.2021 via our Online-Recruitment-System<https://www.hrecruiting.de/obf2/index.php?kunden_nr=t5ChjatkIfdwmACO&link_i…>! Kind regards Martina -- Dr. Martina Reske Scientific Coordinator Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience Jülich Research Centre and JARA Jülich, Germany Work +49.2461.611916 Work Cell +49.151.26156918 Fax +49.2461.619460 www.csn.fz-juelich.de<http://www.csn.fz-juelich.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

Feb. 26, 2021

Assistant Professor / Postdoc position in computational neuroscience and/or developmental robotics at the University of Tokyo

by Yukie Nagai

Dear colleagues, The International Research Center for Neurointelligence (IRCN) at the University of Tokyo is looking for highly motivated full-time Assistant Professor / Postdoc researchers in the field of computational neuroscience and/or developmental robotics. The selected candidates will join Cognitive Developmental Robotics Laboratory head by Prof. Yukie Nagai and have the opportunity to pursue interdisciplinary research integrating computer science, robotics, neuroscience, cognitive science, and psychology. If you are interested in being considered, please send the required documents to yukie(a)ircn.jp. Assistant Professor / Postdoc Researcher at IRCN, the University of Tokyo https://ircn.jp/en/careers/postdoctoral-fellow-project-researcher-nagai-lab… Cognitive Developmental Robotics Laboratory (Nagai Lab) http://developmental-robotics.jp --------------------------------------------------------------------------------- 1. Job title: Project Assistant Professor / Project Researcher (Postdoctoral Fellow) 2. Starting Date: Negotiable 3. Term: The first contract will be ended on March 31, 2022. The contract is renewable on a fiscal year basis (from April 1 to March 31; every year) according to research budget and research achievements. 4. Place of Work International Research Center for Neurointelligence, The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo, 113-0033 JAPAN 5. Qualifications (Required) - Ph.D. in Computer Science, Ph.D. in Engineering, or equivalent in a related field - Good communication skill in English (Preferred) - Experiences in computational neuroscience, neural network, machine learning, and/or developmental robotics are preferred. 6. Compensation & Benefits - Salary: To be determined in accordance with the University of Tokyo Regulations - Commuter allowance: JPY55,000 per month at maximum - Social Insurance: Eligible for MEXT Mutual Aid Association membership, employees’ pension, employment insurance, and workers’ accident compensation insurance. - Vacation: Annual paid vacation, Sick leave (paid), Special vacation (paid) 7. Working Hours Discretionary labor system, based on 7 hours, 45 minutes per day, or 38 hours 45 minutes per week 8. Holidays Saturdays and Sundays; Statutory public holidays of Japan; Year-end and New Year holidays (December 29 through January 3); Summer holidays 9. Applications - Deadline: When the position is filled - Application documents: (a) Cover letter in English (b) Curriculum vita in English (c) Publication list (d) Name and contact address for two references, one of which should be a previous employer - Submission: Interested applicants should send application materials to: yukie(a)ircn.jp 10. Selection Process All applications will be screened, and only those qualified will be scheduled for an online interview. --------------------------------------------------------------------------------- — Yukie Nagai, Ph.D. Project Professor, The University of Tokyo nagai.yukie(a)mail.u-tokyo.ac.jp | http://developmental-robotics.jp CREST Cognitive Mirroring: http://cognitive-mirroring.org

Feb. 26, 2021

Computational postdoctoral position in the lab of Nancy Kopell

by McCarthy, Michelle M

The group of N. Kopell has an opening for an energetic postdoctoral fellow who will work with experimentalists Don Arnold, Scott Fraser and others on fear conditioning and extinction in zebra fish. Such learning is known to involve temporally complex alterations in multiple brain rhythms in multiple areas of the brain, and the postdoc will work with the Kopell group and the experimentalists to understand the origin of the rhythmic changes and the effects on plasticity needed for conditioning and extinction. The relevant data involve state of the art imaging with a spatial resolution of single spines and temporal resolution fast enough to record fast brain oscillations. The relevant computations will involve networks of biophysically detailed model neurons. The successful applicant will have some background in neuroscience and experience in coding with biophysically detailed equations. Some mathematical background is desirable. If you are interested, please email Kopell: nk(a)bu.edu<mailto:nk@bu.edu>, and have three letters of recommendation sent to her via email. Also include a CV and a statement of research interests.

Feb. 25, 2021

Shanahan Foundation Fellowship at the Interface of Data and Neuroscience

by Adrienne L Fairhall

We are thrilled to announce the *Shanahan Foundation Fellowship at the Interface of Data and Neuroscience* co-hosted by the Allen Institute and the University of Washington (through its eScience Institute and the Computational Neuroscience Center) in Seattle. The fellowships are funded by the Shanahan Family Foundation and the Allen Institute. This three-year data science postdoctoral fellowship program aims to *Integrate Data Scientists into Neuroscience Research*. Fellows will receive interdisiplinary co-mentorship by scientists from the Allen Institute and University of Washington. Data science is broadly interpreted to include those with PhD level training in relevant areas including physical sciences, mathematics, statistics and computer science. Please see details and application instructions here: https://alleninstitute.org/what-we-do/brain-science/careers/shanahan-founda…

Feb. 25, 2021

Shanahan Foundation Fellowship at the Interface of Data and Neuroscience

by Anton Arkhipov

Announcing the Shanahan Foundation Fellowship at the Interface of Data and Neuroscience co-hosted by the Allen Institute and the University of Washington (through its eScience Institute and the Computational Neuroscience Center) and directed by Christof Koch, Ph.D.<https://alleninstitute.org/what-we-do/brain-science/about/team/staff-profil…>, Chief Scientist for the MindScope Program at the Allen Institute. The fellowships are funded by the Shanahan Family Foundation and the Allen Institute. This three-year data science postdoctoral fellowship program aims to Integrate Data Scientists into Neuroscience Research and provides Multidisciplinary, Multi-organizational Co-Mentorship (from the Allen Institute and University of Washington). Please see details and application instructions here: https://alleninstitute.org/what-we-do/brain-science/careers/shanahan-founda… Anton Arkhipov Associate Investigator T: 206.548.8414 E: antona(a)alleninstitute.org<mailto:antona@alleninstitute.org> [Text Description automatically generated] alleninstitute.org<https://alleninstitute.org> brain-map.org

Feb. 25, 2021

CFP for PhD candidates in SPIKE NEURAL NETWORK FOR ATMOSPHERIC DATA MINING

by Chaabane Djeraba

The FOX research team from the CRIStAL laboratory (UMR CNRS) of Lille University - FR, in collaboration with bio-inspired team of Kent University - UK is looking for PhD student candidates on the following subject : SPIKE NEURAL NETWORK FOR ATMOSPHERIC DATA MINING Title : SPIKE NEURAL NETWORK FOR ATMOSPHERIC DATA MINING Abstract of the PhD subject : The objective of the PhD thesis is the study of bio-inspired pattern recognition of atmospheric phenomena, from earth observation satellite. In particular, the thesis project studies neuromorphic learning approach for the classification of spatiotemporal image sequences available in large quantities and without terrain truth or with very limited terrain truth. The data are aerosols, collected from earth observation satellites. The results of the thesis will contribute to make a large amount of atmospheric data accessible, even exploitable by the scientific community in the domain of the detection, tracking and prediction of the air quality. We are looking for excellent PhD candidates in thre domain of AI applied to atmospheric data. Key words : Spike neural network, Machine learning, Artificial intelligence, atmospheric data mining Candidates must hold a Master degree in Computer Science, Mathematics, Statistics. Experience in one or more of the following is a plus: • image processing, computer vision; • machine learning; • research methodology (literature review, experimentation…). Candidates should have the following skills: • good proficiency in English, both spoken and written; • scientific writing; • programming (experience in Python, Java or C++). More details are available here : https://filesender.renater.fr/?s=download&token=76a3ba06-63af-43a7-a34a-40e… The PHD thesis will be funded in the framework of the AI_PhD@Lille program. http://www.isite-ulne.fr/index.php/en/phd-in-artificial-intelligence/ http://www.isite-ulne.fr/wp-content/uploads/2021/02/Thèses-IA_Campagne2021_… www.isite-ulne.fr/wp-content/uploads/2021/02/Thèses-IA_Campagne2021_I_Site… The candidate will be funded for 3 years; he/she is expected to defend his/her thesis and graduate by the end of the contract. The monthly gross salary is around 2000€, including benefits (health insurance, retirement fund, and paid vacations). Additional financial support is expected in the framework of the AI_PhD@Lille program. The position is located in Lille, France. With over 110 000 students, the metropolitan area of Lille is one France's top education student cities. The European Doctoral College Lille Nord-Pas de Calais is headquartered in Lille Metropole and includes 3,000 PhD Doctorate students supported by university research laboratories. Lille has a convenient location in the European high-speed rail network. It lies on the Eurostar line to London (1:20 hour journey). The French TGV network also puts it only 1 hour from Paris, 35 mn from Brussels, and a short trips to other major centres in France such as Paris, Marseille and Lyon. We look forward to receiving your application as soon as possible, but no later than 20.03.2021. — Chaabane Djeraba (PhD), Professeur, Univ. Lille, CNRS, Centrale Lille, UMR 9189 CRIStAL, F-59000 Lille, Bat. IRCICA, 50 avenue Halley, 59650 Villeneuve d’Ascq, France, chabane.djeraba(a)univ-lille.fr

Feb. 25, 2021

Open Master, PhD and Postdoc positions in Germany

by Tatjana Tchumatchenko

Dear friends and colleagues, I would appreciate if you could spread the word among your students and postdocs. My group which is now at the University of Bonn is looking for Master Students, PhD Students and Postdocs Master Students, PhD Students or Postdocs interested in understanding how neuronal networks work, how they respond to stimuli and what role connectivity and single neuron dynamics play for the activity of the brain. Though the focus of my research is on the theory side, my lab has close ties to experimentally oriented labs and Master projects could include both theory and experiments. We are looking for bright and hard-working students with a life-science or quantitative background (physics, math, biology etc). The following PhD projects are currently open: 1) A project exploring the intersection of protein dynamics and machine learning 2) A project designing models describing protein dynamics in dendrites and analyzing imaging data, https://jobrxiv.org/job/institute-of-experimental-epileptology-and-cognitio… The postdoctoral position will address the relation between neurological diseases, protein dynamics and network activity. When applying please attach a CV (with a publication record) and a current copy of academic transcripts and mention at least one academic reference. For more information, please contact Prof. Tatjana Tchumatchenko via email tatjana.tchumatchenko(a)uni-bonn.de https://twitter.com/TTchumatchenko www.tchumatchenko.de

Feb. 25, 2021

PhD position in cognitively-inspired reinforcement learning for robotics at Sheffield, UK

by Aditya Gilra

Dear all, Announcing a PhD position with Dr Aditya Gilra and Dr James Law at the University of Sheffield, UK on "Incorporating self- and world-models in neural networks for flexible robot learning and control". The position is funded for 3.5 years by the EPSRC. Details at: https://www.findaphd.com/phds/project/incorporating-self-and-world-models-i… Candidates will be interviewed on a rolling basis as the applications come in. International (non-UK) candidates are advised to apply well in advance of the 7th March deadline. Don't hesitate to email back for further details. Best, Aditya. -- Aditya Gilra, Lecturer (Assistant Professor), Machine Learning Group <https://www.sheffield.ac.uk/dcs/research/groups/machine-learning> & Neuroscience Institute <https://www.sheffield.ac.uk/neuroscience-institute/research/computational-a…> , Department of Computer Science, University of Sheffield, UK. https://www.sheffield.ac.uk/dcs/people/academic/aditya-gilra http://www.adityagilra.net/

Feb. 25, 2021

Three Post-Doc / Research Associate positions in 'Causal eXplainable Reinforcement Learning' project at Sheffield / Vienna / Lille

by Aditya Gilra

Dear All, Announcing three post-doc / research associate openings to work closely together as part of a ~3 year Chist-Era project, to develop causal inference methods for explainable actions in reinforcement learning ( https://www.chistera.eu/projects/causalxrl) starting in ~Q2, 2021: -> At the University of Sheffield with Dr Aditya Gilra and Prof Eleni Vasilaki, with an emphasis on biologically-plausible neural circuits -- https://www.jobs.ac.uk/job/CEH708/research-associate-in-causal-explainable-… (Deadline: 18th March 2021, but might be extended). -> At the University of Vienna with Prof Moritz Grosse-Wentrup, with an emphasis on causal inference and brain-computer interfaces -- https://ni.cs.univie.ac.at/ (ad to appear). -> At INRIA Lille with Prof Philippe Preux, with an emphasis on reinforcement learning and applications -- https://jobs.inria.fr/public/classic/en/offres/2020-03209 (Deadline: 31st March 2021). Please feel free to email back for any further information. Best, Aditya. -- Aditya Gilra, Lecturer (Assistant Professor), Machine Learning Group <https://www.sheffield.ac.uk/dcs/research/groups/machine-learning> & Neuroscience Institute <https://www.sheffield.ac.uk/neuroscience-institute/research/computational-a…> , Department of Computer Science <https://www.sheffield.ac.uk/dcs>, University of Sheffield <https://www.sheffield.ac.uk/>, UK. https://www.sheffield.ac.uk/dcs/people/academic/aditya-gilra http://www.adityagilra.net/

Feb. 25, 2021

Call for a Postdoctoral Researcher in Cognitive and Computational Neuroscience

by Sidarus, Nura

Dear colleagues, Applications are invited for a Post-doctoral Researcher to work with Dr Nura Sidarus as part of the ESRC funded project “A Computational Approach to Understanding Maladaptive Cognition in Depression”, at Royal Holloway University of London. The project will investigate the neurocomputational mechanisms of maladaptive cognition underlying depressive symptoms, through online, clinical, and neuroimaging studies focusing on attribution and value-based decision-making and learning. We are looking for talented, highly-skilled and motivated researchers with a PhD in a related field (e.g. neuroscience, psychology or cognitive science), with considerable experience applying mathematical modelling techniques to data. Strong abilities in programming and statistics are essential. Expertise in neuroscience of mental health and fMRI are highly desirable. The preferred start date is Summer 2021, or as soon as can be arranged, for up to December 2022. Informal enquiries may be made to Dr Nura Sidarus at Nura.Sidarus(a)rhul.ac.uk<mailto:Nura.Sidarus@rhul.ac.uk> and more information about the grant can be found here<https://gtr.ukri.org/project/87F3B93A-C9BD-4240-BBDC-7596C165DFBF>. Deadline: 6 April 2021 Full details and how apply at: https://jobs.royalholloway.ac.uk/vacancy.aspx?ref=0221-029<https://jobs.royalholloway.ac.uk/vacancy.aspx?ref=0221-029> Best wishes, Nura. __________________________________________________________ Dr Nura Sidarus (she/her) Lecturer | Department of Psychology Royal Holloway University of London | Egham | Surrey | TW20 0EX Office: Wolfson 248 | Tel: +44 (0) 1784 44 3717 Affiliate Member | Institute of Cognitive Neuroscience, UCL nura.sidarus(a)rhul.ac.uk<mailto:%20nura.sidarus@rhul.ac.uk> | www.nurasidarus.com<http://www.nurasidarus.com/> __________________________________________________________ This email, its contents and any attachments are intended solely for the addressee and may contain confidential information. In certain circumstances, it may also be subject to legal privilege. Any unauthorised use, disclosure, or copying is not permitted. If you have received this email in error, please notify us and immediately and permanently delete it. Any views or opinions expressed in personal emails are solely those of the author and do not necessarily represent those of Royal Holloway, University of London. It is your responsibility to ensure that this email and any attachments are virus free.

Feb. 24, 2021

Tenure Track in Complex Systems/Neurophysics

by Andre Longtin

Tenure-track Position in Theoretical Physics of Complex Systems University of Ottawa, Faculty of Science The Department of Physics of the University of Ottawa seeks to fill a tenure-track position in theoretical physics of complex systems. Theoretical neurophysics/artificial intelligence is the main target area for this search, but strong applicants working in complex systems more broadly applied to biological physics, condensed matter physics, photonics, statistical physics, and nonlinear dynamics will be considered. Title of the position: Assistant level but exceptional candidates at higher academic levels are also encouraged to apply. Duties: The functions of a member of the academic staff include, in varying proportions: a) teaching activities; b) scholarly activities pertaining to research and/or professional work; c) academic service activities, d) supervision of graduate students. Terms: Tenure-track position. Wage: As per collective agreement. Benefits package: The University of Ottawa provides a complete compensation package which includes long term disability, basic group life insurance, supplementary health insurance, University of Ottawa Pension Plan, optional life insurance and paid leaves (including maternity, parental and academic leaves: https://hrdocrh.uottawa.ca/info/en-ca/apuo/index.html) Location of work: Department of Physics, University of Ottawa, STEM Complex, 150 Louis-Pasteur, Ottawa, ON K1N 6N5. Contact information: James Harden, Chair, Department of Physics: phychair(a)uottawa.ca<mailto:phychair@uottawa.ca> . Skills requirements: * Education: Ph.D. or equivalent in Physics. * Work experience: Due to the bilingual nature of our major undergraduate program, the successful candidate should be able to teach in French within a year of the appointment. The candidate is expected to lead a vigorous research program, and to contribute to teaching in the major and honors BSc in Physics as well as at the graduate level. We expect a demonstrated interest in interacting with other theorists and experimentalists in the department as well as in the Centre for Neural Dynamics and the Brain and Mind Research Institute, the Centre for Research in Photonics, the Max Planck-uOttawa Centre for Extreme and Quantum Photonics, and/or the Centre for Advanced Materials Research. Posting No.: 21016-SCI www.uottawa.ca/vice-president-academic/faculty-relations/faculty-recruitmen… Application deadline: April 30, 2021. The application material consists of a CV, a two-page summary of research plans and a one-page teaching statement, along with the contact information for three referees. The application should be emailed to Sophie Grimard (sgrimard(a)uottawa.ca<mailto:sgrimard@uottawa.ca>), secretary to the Chair Prof. James Harden, by April 30, 2021. The University of Ottawa is committed to ensuring equity, diversity and inclusion in the scholarly and leadership environments of our students, staff, and faculty. Accordingly, we strongly encourage applications from Indigenous persons, visible minorities members (racialized persons), persons with disabilities, women, as well as from all qualified candidates with the skills and knowledge to productively engage with equitable, diverse and inclusive communities. Candidates who wish to be considered as a member of one or more designated groups are asked to complete the confidential Self-Identiﬁcation Questionnaire, to be completed at the time of application. Please take note of this posting number. This questionnaire can be found online. According to government policy, all qualified candidates are invited to apply; however, preference will be given to Canadians and permanent residents. When submitting your application, please indicate if you are legally entitled to work in Canada. The University of Ottawa provides accommodations for applicants with disabilities throughout the recruitment process. If you are invited to proceed in the selection process, please notify us of any accommodations that you require by contacting the Office of the Vice-Provost, Faculty Relations at 613-562-5958. Any information you send us will be handled respectfully and in complete confidence. The University of Ottawa is proud of its 160-year tradition of bilingualism. Through its Official Languages and Bilingualism Institute, the University provides training to staff members and to their spouses in their second official language. At the time of tenure, professors are expected to have the ability to function in a bilingual setting. Notice of Collection of Personal Information In accordance with the Freedom of Information and Protection of Privacy Act (Ontario) and with University Policy 90, your personal information is collected under the authority of the University of Ottawa Act, 1965 and is intended to be used for the purpose of and those consistent with your employment application and the administration of your employment relationship, if established. If you have any questions regarding this collection of personal information, please contact Office of the Vice-Provost, Faculty Relations at (613) 562-5958 or by email at vra.affairesprofessorales(a)uottawa.ca<mailto:vra.affairesprofessorales@uottawa.ca>.

Feb. 24, 2021

'What is self-organizaton?' -- Entropy sepcial issue

by Claudius Gros

Dear colleagues Together with Damian Zanette, we are editing a an Entropy special issue around a question, that is of particular interest to the neurosciences: 'What is self-organizaton?' Deadline: 15 October 2021 https://www.mdpi.com/journal/entropy/special_issues/self_organzation ------ info ------ Many of us have used the notion of `self-organization' in our studies. What is it precisely, though? A constituent element could be, e.g., the emergence of non-trivial properties from comparatively simple rules. What would simple, non-trivial or complex emergence mean in this context? In this Special Issue, we invite viewpoints, perspectives, and applied considerations on questions regarding the notions of self-organization and complexity. Examples include: Routes In how many different ways can self-organization manifest itself? Would it be meaningful, or even possible, to attempt a classification? Detection Can we detect it automatically, either the process or the outcome? Or do we need a human observer to classify a system as `self-organizing'? This issue may be related to the construction of quantifiers, e.g., in terms of functions on phase space, such as entropy measures. Complexity Is a system self-organizing only when the resulting dynamical state is `complex'? What does `complex' mean exactly? Are there many types of complexity, or just a single one? E.g., it has never been settled whether complexity should be intensive or extensive, if any. Domains Where do we find self-organizing processes? Are the properties of self-organizing systems domain-specific or universal? In which class of systems does self-organization show up most clearly? We are looking forward to your contribution! Claudius Gros %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% ### ### Prof. Dr. Claudius Gros ### http://itp.uni-frankfurt.de/~gros ### ### Complex and Adaptive Dynamical Systems, A Primer ### A graduate-level textbook, Springer (2008/10/13/15) ### ### Life for barren exoplanets: The Genesis project ### https://link.springer.com/article/10.1007/s10509-016-2911-0 ###

Feb. 24, 2021

Re: [Comp-neuro] INCF/OCNS Software WG: Dev sessions on Brian (11th Feb) and NeuroFedora (16th Feb)

by Ankur Sinha

Hello everyone, The recordings from the Brian and NeuroFedora dev sessions are in the process of being uploaded for permanent archival. In the meantime, you can temporarily access them on the Zoom cloud here: Brian: https://ucl.zoom.us/rec/share/a6bAW54s08bOjulZsjXJKjdqqm3wbaFXARpc8xFPwTsOI… Code: p+%x5+b3 NeuroFedora: https://ucl.zoom.us/rec/share/d1-Ok50VwJp2a20AqUOKEnsXU-9iwdT2X-AnyLFSKeaLU… Code: &=EcT%5o -- Thanks, Regards, Ankur Sinha (He / Him / His) Research Fellow at the Silver Lab | http://silverlab.org/ Department of Neuroscience, Physiology, & Pharmacology University College London, London, UK Time zone: Europe/London

Feb. 22, 2021

PhD Student position at the interface of neuroscience and machine learning

by Rava A. da Silveira

The lab of Rava Azeredo da Silveira invites applications for a *PhD Student position* at the *interface of computational neuroscience and machine learning*, at the Institute of Molecular and Clinical Ophthalmology Basel (IOB) in Switzerland, an associated institute of the University of Basel. Research projects will involve modeling and data analysis; some projects will be carried out in the framework of collaborations with experimental labs. Questions will be chosen from a range of topics involving neural representations as relating to behavior, neural coding, dynamics and learning. Candidates with backgrounds in mathematics, statistics, artificial intelligence, physics, computer science, and engineering are welcome. Experience with data analysis and proficiency with numerical methods, in addition to familiarity with mathematical and statistical methods, are desirable. Equally desirable are a spirit of intellectual adventure, eagerness, and drive. The positions will come with highly competitive work conditions and salaries. *Application deadline:* For full consideration, please apply by 15 March 2021. *How to apply:* Please send the following information *in one single PDF, to * *silveira(a)iob.ch* <silveira(a)iob.ch>*:* 1. letter on motivation and interests; 2. curriculum vitæ; 3. transcripts of undergraduate and Master grades. In addition, please arrange for three letters of recommendations to be sent to the same email address. In all email correspondence, please include the mention “APPLICATION-PHD” in the subject header, otherwise the application will *not* be considered. *** *The Silveira** Lab* focuses on a range of topics, which, however, are tied together through a central question: How does the brain represent and manipulate information? Among the more concrete approaches to this question, the lab analyses and models neural activity in circuits that can be identified, recorded from, and perturbed experimentally, such as visual neural circuits in the retina and the cortex. Establishing links between physiological specificity and the structure of neural activity yields an understanding of circuits as building blocks of cerebral information processing. On a more abstract level, the lab investigates the representation of information in populations of neurons, from a statistical and algorithmic—rather than mechanistic—point of view, through theories of coding and data analyses. These studies aim at understanding the statistical nature of high-dimensional neural activity in different conditions, and how this serves to encode and process information from the sensory world. In the context of cognitive studies, the lab investigates mental processes such as inference, learning, and decision-making, through both theoretical developments and behavioral experiments. A particular focus is the study of neural constraints and limitations and, further, their impact on mental processes. Neural limitations impinge on the structure and variability of mental representations, which in turn inform the cognitive algorithms that produce behavior. The lab explores the nature of neural limitations, mental representations, and cognitive algorithms, and their interrelations.

Feb. 20, 2021

Postdoc opening at the interface of cognitive science and machine learning

by Rava A. da Silveira

The lab of Rava Azeredo da Silveira invites applications for a *Postdoctoral Researcher* position at the *interface of theoretical/computational cognitive science and machine learning* at the Institute of Molecular and Clinical Ophthalmology Basel (IOB) in Switzerland, an associated institute of the University of Basel. Research questions will be chosen from a range of topics involving models of decision making, learning, and memory, with a particular focus on the structure of human inference, the nature of internal representations/latent variables, and behavioral variability. While the projects will be primarily theoretical, they will involve data analysis and may be complemented with behavioral experiments or carried out in collaboration with experimental labs. Candidates with backgrounds in mathematics, statistics, artificial intelligence, physics, computer science, engineering, and psychology are welcome. Experience with data analysis and proficiency with numerical methods, in addition to familiarity with neuroscience topics and mathematical and statistical methods, are desirable. Equally desirable are a spirit of intellectual adventure, eagerness, and drive. The positions will come with highly competitive work conditions and salaries. *Application deadline:* For full consideration, please apply by 15 March 2021. *How to apply:* Please send the following information *in one single PDF, to * *silveira(a)iob.ch* <silveira(a)iob.ch>*:* 1. letter of motivation; 2. statement of research interests, limited to two pages; 3. curriculum vitæ including a list of publications; 4. any relevant publications that you wish to showcase. In addition, please arrange for three letters of recommendations to be sent to the same email address. In all email correspondence, please include the mention “APPLICATION-POSTDOC” in the subject header, otherwise the application will *not* be considered. *** *The Silveira** Lab* focuses on a range of topics, which, however, are tied together through a central question: How does the brain represent and manipulate information? Among the more concrete approaches to this question, the lab analyses and models neural activity in circuits that can be identified, recorded from, and perturbed experimentally, such as visual neural circuits in the retina and the cortex. Establishing links between physiological specificity and the structure of neural activity yields an understanding of circuits as building blocks of cerebral information processing. On a more abstract level, the lab investigates the representation of information in populations of neurons, from a statistical and algorithmic—rather than mechanistic—point of view, through theories of coding and data analyses. These studies aim at understanding the statistical nature of high-dimensional neural activity in different conditions, and how this serves to encode and process information from the sensory world. In the context of cognitive studies, the lab investigates mental processes such as inference, learning, and decision-making, through both theoretical developments and behavioral experiments. A particular focus is the study of neural constraints and limitations and, further, their impact on mental processes. Neural limitations impinge on the structure and variability of mental representations, which in turn inform the cognitive algorithms that produce behavior. The lab explores the nature of neural limitations, mental representations, and cognitive algorithms, and their interrelations.

Feb. 20, 2021

Valentin Braitenberg Award for Computational Neuroscience - call for nominations!

by Alexandra Stein

Dear Colleagues, The Bernstein Network Computational Neuroscience invites nominations for the Valentin Braitenberg Award for Computational Neuroscience. The Bernstein Network presents the award biennially to a scientist in recognition of outstanding research that contributes to the understanding of the functioning of the brain. The major criterion for the award is the impact or potential impact of the recipient's research on the field of brain science. In the spirit of Valentin Braitenberg's own research, special emphasis is given to theoretical studies elucidating the functional implications of brain structures and their neuronal network dynamics. The awardee receives €5.000 prize money, donated by the Autonome Provinz Bozen Südtirol, as well as a Golden Neuron pin. The award will be presented in a special award ceremony at the online Bernstein Conference 2021, followed by a keynote lecture of the Braitenberg Awardee. Nominations may be submitted by scientists working in the field of computational neuroscience and should include the following documents: - One-page laudation, in which the scientific work of the candidate is honored with regard to the award criteria - CV and list of publications Deadline for nominations is April 30, 2021 by email to a.stein(a)fz-juelich.de<mailto:a.stein@fz-juelich.de> Please note that self-nominations are not permitted. The call for nominations can be found under the following URL: https://www.bernstein-network.de/en/the-network/awards/Call_Braitenberg_2020<http://www.nncn.de/en/bernstein-conference/2018/braitenberg_award> For inquiries please contact a.stein(a)fz-juelich.de<mailto:a.stein@fz-juelich.de>. Best regards, Alexandra Stein -- Dr. Alexandra Stein Head of Bernstein Coordination Site Bernstein Network Computational Neuroscience | Bernstein Coordination Site (BCOS) Branch Office of the Forschungszentrum Jülich at the University of Freiburg Hansastr. 9A | 79104 Freiburg, Germany phone: (+49) 0761 203 9583 mobile: (+49) 0151 67114645 mail: a.stein(a)fz-juelich.de<mailto:a.stein@fz-juelich.de> web: www.bernstein-network.de<http://www.bernstein-network.de> Twitter: BernsteinNeuro YouTube: Bernstein TV LinkedIn: Bernstein Network Computational Neuroscience, Germany ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

Feb. 18, 2021

Faculty Position in Comp-Neuro / ML at Champalimaud - Deadline February 28, 2021

by Christian Machens

Faculty Position in Computational Neuroscience / Machine Learning at Champalimaud Research - Deadline February 28, 2021 The Champalimaud Foundation (CF) invites applications for Group Leaders to join a dynamic and highly collaborative international research institute in Lisbon, Portugal. Champalimaud Research (CR) is seeking to expand its Neuroscience Programme (CNP) with one Junior Group Leader (Assistant Professor equivalent). About you We welcome applicants with expertise in modern Machine Learning and Artificial Intelligence. Suitable research areas for the recruited applicant include statistical methods for complex, high-dimensional datasets, artificial neural networks, computer vision, reinforcement learning, and control theory. We will consider candidates that work on foundational issues in these fields, as well as candidates who take more applied approaches. The ideal candidate should present a research program with both fundamental research and applied elements, and have a strong desire to collaborate with existing teams within CR and CF, including the Champalimaud Clinical Centre. Special attention will be given to applications of individuals from underrepresented groups. About the position To promote risk-taking research, generous support for salary, start-up and annual running costs will be provided. Researchers will be based at the Champalimaud Centre for the Unknown (CCU), a highly interactive and innovative scientific environment where the Neuroscience Programme is composed of groups applying a range of theoretical and experimental approaches to understand the algorithmic, physiological and circuit mechanisms of behaviour. Researchers routinely collect rich datasets ripe for development and application of new analysis tools or comparison with theory. These datasets include high dimensional neurophysiological and imaging data, to -omics, and various measures of behaviour. About us The Champalimaud Centre for the Unknown is situated on the waterfront in Lisbon. English is the official language of the Centre. Lisbon has a sunny Atlantic-Mediterranean climate, vibrant culture, international schools, convenient housing options and is considered one of the world’s safest cities. About the application Applications should include a (1) detailed scientific curriculum vitae, which may include any mentoring, outreach, or policy experiences, (2) a brief summary of past accomplishments (max. two pages), (3) a description of future research plans (max. four pages), (4) three key publications (pdf-files preferred, preprints welcome) along with (5) brief (~200 word each) descriptions of their significance, and (6) contact details for three individuals who can provide recommendation letters upon request. Applications or informal inquiries should be addressed to careers(a)research.fchampalimaud.org <mailto:careers@research.fchampalimaud.org> with the subject “Neuro GL Call 2020 – YOUR LAST NAME”. The deadline for the applications is February 28, 2021 and review of applications will begin in March, 2021. Non-discrimination and equal access policy The Champalimaud Foundation actively promotes non-discrimination and equal access, so that no candidate may be privileged, favored, prejudiced or deprived of any right or excluded from any duty on the basis of age, sex, gender identity, sexual orientation, race/ethnicity, disability, chronic illness, language, nationality, territory of origin, family status (marital, pregnancy and maternity, having or not having dependents), socioeconomic situation, education, religion, political or ideological beliefs, trade union membership, or on any other grounds which are not deemed relevant for the performance of the duties associated with the advertised position.

Feb. 18, 2021

INCF/OCNS Software WG: Dev session on Neurolib (23rd Feb)

by Ankur Sinha

Hello everyone, Apologies for the cross-posts. The INCF/OCNS Software Working Group (WG)[1] is happy to announce the next "Dev session" on Neurolib[2] where Caglar Cakan will introduce the software and then discuss its *development* pipeline. The session will be held on Feb 23, 2021 at 1700 UTC[3]. Zoom link: https://tu-berlin.zoom.us/j/68960683644?pwd=a2JTTS8xZXhwY0ZtQ0J0aktRVW52Zz09 The aim of these sessions is to stimulate discussion of the development practices and tools used by different teams to improve the software we use while also improving our knowledge of these practices and tools. We also hope to encourage more users of these tools to contribute to their development to ensure their longevity. The abstract of the talk is below: neurolib is a computational framework for whole-brain modelling written in Python. It provides a set of neural mass models that represent the average activity of a brain region on a mesoscopic scale. In a whole-brain network model, brain regions are connected with each other based on structural connectivity data, i.e. the connectome of the brain. neurolib can load structural and functional data sets, set up a whole-brain model, manage its parameters, simulate it, and organize its outputs for later analysis. The activity of each brain region can be converted into a simulated BOLD signal in order to calibrate the model to empirical data from functional magnetic resonance imaging (fMRI). Extensive model analysis is possible using a parameter exploration module, which allows to characterize the model’s behaviour given a set of changing parameters. An optimization module allows for fitting a model to multimodal empirical data using an evolutionary algorithm. Besides its included functionality, neurolib is designed to be extendable such that custom neural mass models can be implemented easily. neurolib offers a versatile platform for computational neuroscientists for prototyping models, managing large numerical experiments, studying the structure-function relationship of brain networks, and for in-silico optimization of whole-brain models. ----- If you develop software for neuroscience, we would love to hear about your development pipeline. Please get in touch with the Software WG either on INCF's Neurostars platform[4] or on our GitHub repository[5]. The WG is a community based group that is open to everyone at all levels of their careers (academic or otherwise). Please introduce yourself to the community on our channels to get involved. [1] https://ocns.github.io/SoftwareWG/pages/about.html [2] https://neurolib-dev.github.io/ [3] https://ocns.github.io/SoftwareWG/2021/02/12/dev-session-caglar-cakan-neuro… [4] https://neurostars.org/t/ocns-infrastructure-software-tools-sig-meet-and-gr… [5] https://github.com/OCNS/SoftwareWG/issues On behalf of the WG, -- Thanks, Regards, Ankur Sinha (He / Him / His) Research Fellow at the Silver Lab | http://silverlab.org/ Department of Neuroscience, Physiology, & Pharmacology University College London, London, UK Time zone: Europe/London

Feb. 18, 2021

two faculty positions at Imperial College in 'intelligent systems' (deadline March 1st)

by Goodman, Daniel F M

We are hiring two new faculty positions in the Electrical Engineering department at Imperial College, deadline March 1st. The advert below talks about machine learning and computer vision, but actually we're open to anything that will complement the existing interests of our group (robotics, machine learning, computational neuroscience). In particular, we're looking for people who can develop new collaborations with our group, so interdisciplinary researchers touching on any of these topics please do apply! I'd also like to add that we'd particularly encourage applications from women and other groups that are underrepresented in our department. https://www.imperial.ac.uk/jobs/description/ENG01538/lecturersenior-lecturer Please do feel free to get in touch for more info. Dan

Feb. 18, 2021

15 PhD positions translational vision science, OptiVis

by Peter König

15 PhD positions in Translational Vision Science It is essential to know what visually impaired individuals can do with their residual vision in daily life activities, otherwise known as their "functional vision". Conventional ophthalmic tests (e.g. visual field tests) are able to detect the extent of a visual defect, but they yield little information about functional vision. This lack of appropriate tests impedes the optimal practice of diagnostics (in ophthalmic and neurological care, in particular of children and elderly), rehabilitation and classification (essential in sports competitions). Our European MARIE SKŁODOWSKA-CURIE Innovative Training Network (ITN) OptiVisT aims to resolve this by (1) gaining new Insights: i.e. a fundamental understanding of the visual demands of activities of daily living and sports; (2) developing Solutions: i.e. creating new objective, inclusive and engaging tools for testing, training and augmenting functional vision; and (3) the Application of 1 and 2: evaluating the effectiveness of our new tools in diagnostics, rehabilitation and classification in practice. Are you, like us, fascinated by vision, the brain and technology and consider it important to help visually impaired people? Do you have an inquisitive mind, and are you looking for a PhD position embedded in an international innovative training network in which you can develop your research, technical or clinical skills? Then consider applying with OptiVisT and join one of our 15 PhD projects (overview below). We offer PhD positions in academia, medical, technology and rehabilitation institutes, and high-tech companies. Curious to see and hear more about what it means to be part of such Innovative Training Network? Check out these two short movies about our previous ITNs NextGenVis and EGRET+. If you are interested in one of our PhD positions, visit our website (www.optivist.eu) for more information on our application procedures. The deadline for applying for this project is February 28th, 2021. General questions can be directed to info(a)optivist.eu. Project specific questions can be directed to the project contacts as mentioned on the website. Best, Peter König (on behalf of the Optivis Consortium)

Feb. 17, 2021

CFP Frontiers Research Topic: Affective Shared Perception

by Pablo Vinicius Alves De Barros

Extended Deadline: Call For Papers - Frontiers Research Topic: Affective Shared Perception I. Aim and Scope Our perception of the world depends on both sensory inputs and prior knowledge. This applies in general to sensing and has particular implications for affective understanding. Humans adapt their social and affective perception as a function of the current stimulation, of the context, of the history of the interaction, and as of the status of the partner. This influences their behavior, which in turn modifies the social and affective perception of both partners and the evolution of the interaction. Understanding shared perception as part of affective processing will allow us to tackle this problem and to provide the next step towards a real-world affective computing system. The goal of this research topic is to present and discuss new findings, theories, systems, and trends in affective shared perception and computational models. We are interested in collecting interesting and exciting research from researchers on the areas of social cognition, affective computing, and human-robot interaction, including also, but not restricted to specialists in computer and cognitive science, psychologists, neuroscientists, and specialists in bio-inspired solutions. We envision that it will allow us to tackle the existing problems in this area and it will provide the next step towards a real-world affective computing system. II. Potential Topics Topics include, but are not limited to: - Affective perception and learning - Affective modulation and decision making - Developmental perspectives of shared perception - Machine learning for shared perception - Bio-inspired approaches for affective shared perception - Affective processing for embodied and cognitive robots - Multisensory modeling for conflict resolution in shared perception - New psychological findings on a shared perception - Assistive aspects and applications of shared affective perception III. Submission - Paper Submission - 23 March 2021 IV. Guest Editors Pablo Vinicius Alves De Barros, Italian Institute of Technology (IIT), Genova, Italy Alessandra Sciutti, Italian Institute of Technology (IIT), Genova, Italy Ginevra Castellano, Uppsala University, Uppsala, Sweden Yukie Nagai, The University of Tokyo, Bunkyō, Japan ---------------------------------------- Dr. Pablo Barros Postdoctoral Researcher - CONTACT Unit Istituto Italiano di Tecnologia – Center for Human Technologies Via Enrico Melen 83, Building B 16152 Genova, Italy email: pablo.alvesdebarros(a)iit.it website: https://www.pablobarros.net<http://www.pablobarros.net><https://www.p> twitter: @PBarros_br

Feb. 16, 2021

Research Topic in Frontiers in Neuroprosthetics

by Marianna Semprini

Dear colleagues, We are excited to announce a Research Topic in Frontiers in Neuroscience - section Neuroprosthetics titled "Improving Neuroprosthetics through Novel Techniques for processing Electrophysiological Human Brain Signals". This research topic focuses on innovative approaches for translating current research results into useful clinical applications providing novel therapeutic possibilities in the neurorehabilitation and neuroprosthetic field. The development of these novel solutions could help people with disabilities to overcome their daily obstacles and achieve a better quality of life. We are thus widely open to contributions that target: * novel experimental designs, clinical protocols, and applications involving brain signals in the context of neurorehabilitation; * techniques for off-line signal processing, e.g. investigation of brain activity (EEG, EcoG, stereo-EEG, MEG), characterization of brain oscillations, decoding of information in the brain (e.g. sensory and/or motor); * techniques for on-line signal processing, e.g. novel hardware design for treating human brain signals; * assessment of plastic changes following a neurorehabilitation treatment or upon usage of a prosthetic device, e.g. novel biomarkers based on electrophysiological recordings, computational models for understanding reconfiguration mechanisms; * standardized methods to store and process data, in agreement with the FAIR principles. We accept submissions of manuscripts as Original Research, Systematic Review, Review (and mini-Review), Perspective, Clinical Trial, Case Report, Brief Research Report. Deadline for manuscript submission is June 5th, 2021. More information can be found here<https://www.frontiersin.org/research-topics/18352/improving-neuroprosthetic…>. We look forward to your contributions. The Research Topic co-editors, Marianna Semprini Gabriele Arnulfo Ioannis Delis Felix Siebenhühner Gianluca Susi Marianna Semprini, PhD Rehab Technologies IIT-INAIL Lab Phone : 010 71781 212 ISTITUTO ITALIANO DI TECNOLOGIA Via Morego 30, 16163 Genova Site: www.iit.it

Feb. 16, 2021

10 PhD/Postdoc positions on metrology for AI in medicine at PTB Germany

by Haufe, Stefan

Dear colleagues, I would be grateful if you could circulate the following announcement. Ten PhD or Postdoc positions are available at the German national metrology institute (PTB) in Berlin and Braunschweig: Topics are centered around metrological aspects (robustness, uncertainty, interpretability) of artificial intelligence in medicine. This includes projects on M/EEG and fMRI inverse problems as well as explainable AI in neuroscience. Please go to is.gd/WYHec1 for details and instructions on the application process. Further information is available under the following links: * on the general research program these positions are embedded in: is.gd/24hYaD * on PTB's AI strategy for medicine: is.gd/Y0cYWv * press release: is.gd/ukCIh9 Candidates specifically interested in one of the first three projects 1. Towards standardized quality control for artificial intelligence systems in critical care (is.gd/HpWzAh) 2. Machine learning and uncertainty quantification for bioelectromagnetic inverse solutions and signal separation methods (is.gd/cdWi1E) 3. Advancing the theory and practice of machine learning model explanations in biomedicine (is.gd/3iPwnu) are encouraged to get in touch with me through haufe_ptb_applications at mailbox dot org . Best wishes, Stefan Haufe

Feb. 16, 2021