- Comp-neuro - lists.cnsorg.org

CNS*2025 Workshop "Enabling synaptic plasticity, structural plasticity, and multi-scale modeling with morphologically detailed neurons using Arbor"

by Jannik Luboeinski

Dear Colleagues, * * we are pleased to announce the workshop "*Enabling synaptic plasticity, structural plasticity, and multi-scale modeling with morphologically detailed neurons using Arbor*", which will take place at *CNS*2025* on *Wednesday, 9 July*, in Florence, Italy. Current computational neuroscience studies are often limited to a single scale or simulator, with many still relying on standalone simulation code due to computational power and technology constraints. Simulations incorporating biophysical properties and neural morphology typically focus on single neurons or small networks, while large-scale neural network simulations often resort to point neurons as a compromise to incorporate plasticity and cell diversity. Whole-brain simulations, on the other hand, frequently sacrifice details at the individual neuron and network composition levels. This workshop introduces recent advances leveraging the next-generation simulator Arbor (https://arbor-sim.org/) designed to overcome these challenges. Arbor enables seamless conversion from the widely used NEURON simulator, facilitates the study of functional and structural plasticity in large neural networks with detailed morphology, and supports multi-scale modeling through co-simulation, integrating microscopic and macroscopic levels of simulation. Arbor is a library optimized for efficient, scalable neural simulations by utilizing both GPU and CPU resources. It supports the simulation of both individual neurons and large-scale networks while maintaining detailed biophysical properties and morphological complexity. The workshop will feature presentations covering three key aspects: * *Effortless transition from NEURON to Arbor:* Beatriz Herrera will introduce the SONATA format, which simplifies the migration process and enables cross-simulator validation, ensuring a smooth transition to Arbor for researchers familiar with NEURON. * *Plasticity simulations with Arbor:* In two talks, Jannik Luboeinski and Felix Wolf will present Arbor’s capabilities in modeling calcium-based functional plasticity as well as calcium-based distance-dependent structural plasticity, providing insights into synaptic and structural changes. * *Multi-scale co-simulation with TVB:* Thanos Manos will demonstrate Arbor’s co-simulation capabilities with The Virtual Brain (TVB) platform, illustrating the study of epilepsy propagation as an example of multi-scale modeling. The workshop will conclude with an *interactive coding session*, offering participants hands-on experience with Arbor and an opportunity to apply the presented concepts. We look forward to meeting you at the workshop, where we expect fruitful exchange and interesting discussions! Best regards, Thorsten Hater, Han Lu, Jannik Luboeinski

June 23, 2025

Full day tutorial on Multiscale Modeling with MOOSE at CNS*2025, July 5, 2025!

by MOOSE Neuro

Dear all, We are pleased to announce a full-day hands-on tutorial on *Multiscale Modeling with MOOSE *at CNS*2025! *Saturday, July 5, 2025, 09:00 - 16:00 CEST, Belvedere room* The objective of this tutorial is to familiarize participants with MOOSE ( https://mooseneuro.github.io/) a comprehensive simulation platform designed for computational modeling in neuroscience and systems biology. In addition to tutorials on biophysical and biochemical models, we shall showcase new features of MOOSE, including *jardesigner, *a new web-based frontend for multiscale modeling. We will illustrate the use of *jardesigner *and MOOSE to build and run spiking neuron models incorporating chemical signaling for neuromodulation and synaptic plasticity on spines. Prerequisites - Some familiarity with basic Python programming and common system commands to run programs from the command-line is expected. - As most of the topics will be hands-on, participants should bring their laptops. - Participants must have a Python environment installed on their laptops. - Participants are encouraged to create a Python environment as described in MOOSE installation instructions: https://github.com/MooseNeuro/moose-core/blob/development/docs/source/insta… *Speakers:* Dr. Subhasis Ray, Prof. Upinder S. Bhalla, Dr. Bhanu Priya S Tentative Schedule 09:00 - 09:40 Multiple Scales in Neuroscience, Upinder S. Bhalla 09:40 - 10:10 Overview of MOOSE, Subhasis Ray 10:10 - 10:40 Coffee Break 10:40 - 11:25 Setting up the software environment, Bhanu Priya S and Subhasis Ray 11:25 - 12:10 Abstract neuron models, Bhanu Priya S 12:10 - 14:00 Lunch Break 14:00 - 14:45 Biophysical neuron model with ion channels, Subhasis Ray 14:45 - 15:30 Modeling biochemical systems, Upinder S. Bhalla 15:30 - 16:00 Coffee Break 16:00 - 17:00 Multiscale modelling and Jardesigner, Upinder S. Bhalla 17:00 - 17:20 Discussion You can save this schedule to your calendar via CNS*2025 Florence: Multiscale modeling with MOOSE <https://cns2025florence.sched.com/event/25kRo/multiscale-modeling-with-moose> We will also present a poster on "*Developments around MOOSE for modeling in Systems Biology and Neuroscience*" on July 8th, 2025. More details can be found here: CNS*2025 Florence: P252: Developments around MOOSE for mode... <https://cns2025florence.sched.com/event/24uTo/p252-developments-around-moos…> Please feel free to share this announcement with anyone who might be interested. Best regards, Parita Mehta Community Manager for MOOSE *On behalf of the MOOSE Team* GitHub: MooseNeuro <https://github.com/MooseNeuro/> Official website: *https://mooseneuro.github.io/ <https://mooseneuro.github.io/> * LinkedIn: *MOOSE Neuro Simulator | LinkedIn <https://www.linkedin.com/in/moose-neuro-simulator-064088315/>* X: *MOOSE Neuro Simulator (@mooseneurosim) / X <https://x.com/mooseneurosim>* Bluesky Social: MOOSE Neuro Simulator <https://bsky.app/profile/moosesim.bsky.social>

June 23, 2025

Neurobridge CNS*2025 Satellite Symposium 'Neural Population Dynamics and Latent Representations'

by Eleonora Russo

Dear all, We are pleased to invite you to the NEUROBRIDGE CNS*2025 Satellite Symposium on Neural Population Dynamics and Latent Representations. In recent years, the study of neural population dynamics has gained growing traction in systems and computational neuroscience, offering a principled framework to link single-neuron activity with behaviorally relevant computation. During the symposium, we will discuss recent machine learning and theoretical advances for analyzing population-level activity and explore how emergent network properties can reveal mechanistic principles of cognition and behavior, with translational implications for clinical neuroscience. Confirmed speakers: * Lorenzo Gaetano Amato – Sant'Anna School of Advanced Studies, Pisa, IT * Demian Battaglia – University of Strasbourg, FR * Daniel Durstewitz – Central Institute for Mental Health, Mannheim, DE * Tatiana A. Engel – Princeton University, Princeton, USA * Sean Froudist-Walsh – University of Bristol, Bristol, UK * Matthieu Gilson – Institut des Neurosciences, Marseille, FR * Maurizio Mattia – Istituto Superiore di Sanità, Rome, IT * Leonardo Pollina – EPFL, Lausanne, CH * Sara Solla – Northwestern University, Evanston, USA The full-day symposium will take place on July 10th in the 📍 Aula Magna at the Scuola Superiore Sant’Anna, Piazza Martiri della Libertà 33, Pisa. Registration for the symposium is free of charge, but seats are limited! For more information and to register, please visit: 👉 https://neurobridge-tne.github.io/ The event will also be streamed online; the link will be available on the symposium website. Please feel free to share this announcement with anyone who might be interested. Best regards, The organisers, Eleonora Russo, Jacopo Carpaneto, Alberto Mazzoni, Nicolò Meneghetti, Silvestro Micera, Calogero Maria Oddo, Solaiman Shokur. --------------------------------------------------------------------------------------------------------------------- Eleonora Russo, Ph.D. PI of the Brain Dynamics Laboratory TT Assistant Professor at Sant’Anna School of Advanced Studies, The BioRobotics Institute, P.za Martiri della Liberta', 33 56127 Pisa, Italy

June 23, 2025

Associate Professor Position in Australia - Monash University

by Elizabeth Zavitz

Dear colleagues, Please find below an advertisement for an Associate Professor position in the Department of Electrical and Computer Systems Engineering at Monash University, Melbourne, Australia. Monash Careers – Associate Professor <https://careers.pageuppeople.com/513/cw/en/job/678997/associate-professor-e…> In this role, you will play a key part in shaping the next generation of engineers. You’ll engage with students through dynamic teaching, mentor future leaders, and collaborate with passionate colleagues to deliver cutting-edge courses. Your expertise will complement our strengths in control systems, wireless technology, signal processing, robotics and AI—driving real-world solutions in electronics, RF, sensors, energy systems, and computing. You’ll also lead impactful research that addresses global challenges, with the support of a collaborative and inclusive research culture. The application deadline is September 14th, 2025, 11:55 pm AEST. Please feel free to share this opportunity with interested colleagues. For any inquiries, do not hesitate to reach out. Liz -- Elizabeth Zavitz, PhD Electrical and Computer Systems Engineering 233 14 Alliance Lane (Bldg 72) Monash University Clayton, VIC 3800 Australia

June 23, 2025

World wide VVTNS series- fifth season closing lecture: Wednesday, June 25, 2025, at 11:00 am EDT| Sebastian Seung , Princeton Neuroscience Institute

by David Hansel

[image: VVTNS.png] https://www.wwtns.online <https://streaklinks.com/A9c7PbbpKY7PxB6PaAJWGD3-/https%3A%2F%2Fwww.wwtns.on…> - on twitter: wwtns@TheoreticalWide You are cordially invited to *VTNS Fifth Season Closing Lecture *that will be delivered by Sebastian Seung, Princeton Neuroscience Institute on the topic Insights into vision from interpreting a neuronal wiring diagram The lecture will be held on zoom on Wednesday, June 25, 2025, at *11:00 am EDT * To receive the link: https://www.wwtns.online/register-page *Abstract: *In 2023, the FlyWire Consortium released the neuronal wiring diagram of an adult fly brain. This contains as a corollary the first complete wiring diagram of a visual system, which has been used to identify all 200+ cell types that are intrinsic to the Drosophila optic lobe. About half of these cell types were previously unknown, and less than 20% have ever been recorded by a physiologist. I will argue that plausible functions for many cell types can be guessed by interpreting the wiring diagram. *About VVTNS : Launched as the World Wide Theoretical Neuroscience Seminar (WWTNS) in November 2020 and renamed in homage to Carl van Vreeswijk in Memoriam (April 20, 2022), Speakers have the occasion to talk about theoretical aspects of their work which cannot be discussed in a setting where the majority of the audience consists of experimentalists. The seminars, **held on Wednesdays at 11 am ET,** are 45-50 min long followed by a discussion. The talks are recorded with authorization of the speaker and are available to everybody on our YouTube channel.* ᐧ

June 22, 2025

Advances in Intelligent Systems, Technologies and Applications

by Barna Iantovics

Call for papersSpecial Issue: Advances in Intelligent Systems, Technologies and ApplicationsJournal: Applied Sciences (ISSN 2076-3417) Impact Factor 2.5Submission https://www.mdpi.com/journal/applsci/special_issues/5IQ6DOHB42 Dear Colleague, You are kindly invited to contribute with a paper to the Special Issue. Intelligence in nature is very diverse; it can be discussed in terms of the intelligence of chimps, dolphins, and many other animals and even the collective intelligence of very simple life forms such as ants. The concept of intelligence is being adopted in many domains of science. From practical and theoretical perspectives, an essential current research direction that is under examination by a very large number of scientists worldwide is the development of artificial systems, also called agent-based systems, which can be either individual agents or cooperative multiagent systems. These systems are embedded in the environment, possess a certain degree of autonomy, and are capable of perceiving the environment and executing actions in it. Intelligence in agent-based systems can emerge through advanced problem-solving abilities. To develop these intelligent systems, techniques such as supervised learning and unsupervised learning play pivotal roles. Supervised learning involves training systems on labeled datasets, enabling them to map inputs to outputs and improve their predictions or classifications over time. These methods are extensively used in applications such as image recognition, natural language processing, and medical diagnosis. On the other hand, unsupervised learning enables systems to identify patterns and structures in unlabeled data, facilitating clustering, anomaly detection, and exploratory data analysis. A more recent paradigm, retrieval-augmented generation (RAG) and cache-augmented generation (CAG), combines retrieval- and cache-based methods with generative models to enhance intelligent systems, producing highly contextualized and accurate responses or actions. These approaches are instrumental in developing advanced systems for domains such as conversational AI, knowledge management, and decision support. Intelligent agent-based systems have many real-world applications, including the health sciences and industry. The number and diversity of intelligent systems are increasing rapidly. In this context, the great challenge consists of creating increasingly intelligent systems. Another critical challenge, approached by only a few researchers worldwide, is the development of universal metrics, including black-box-based intelligence metrics, to measure the intelligence of these systems. Such advances could allow for the comparison of systems based on their intelligence. In cooperative multiagent systems, intelligence can be assessed at the system level; this is known as collective intelligence. Even in very simple cooperative multiagent systems, agents may interact nonlinearly at various decision points, resulting in emergent complexity and intelligence at the system level. This Special Issue aims to establish a solid foundation for future research through a collection of papers that advance the field by elaborating on theories, designing applications, and presenting surveys regarding the next generation of increasingly intelligent systems. The areas of research covered in these papers could include the study of self-organization, emergence, hybridization, scalability, robustness, measuring machine intelligence, and the integration of advanced paradigms such as supervised learning, unsupervised learning, retrieval-augmented generation, and cache-augmented generation. Kind regards,Guest EditorsProf. Dr. Laszlo Barna IantovicsProf. Dr. László KovácsDr. Attila Biró

June 19, 2025

Special Issue: Computational biomimetics methods in drug design: Theory, Applications, and Future Directions

by Barna Iantovics

Call for papers Special Issue: Computationalbiomimetics methods in drug design: Theory, Applications, and Future DirectionsJournal: Biomimetics(ISSN 2313-7673). Impact Factor 3.9Submission https://www.mdpi.com/journal/applsci/special_issues/5IQ6DOHB42 Dear Colleague, Computational biomimetics (CB) methodsdeveloped in the frame of artificial intelligence (AI) and machine learning(ML) are rapidly evolving technologies that are transforming variousindustries. CB enables machines/systems to exhibit human-like intelligence,offering these machines many opportunities to learn from experience. ThisSpecial Issue aims to explore the theoretical foundations, broad range ofapplications, and future directions of CB. Theoretical research can includeideas such as new algorithms and optimization techniques, while applicationscan range from drug design to discovery. Additionally, topics on ethics andsecurity aim to enhance societal impact and the reliability of CB drug designand discovery. This Special Issue seeks to uncover the potential andlimitations of CB, encouraging innovative research and applications in thefield of interest. The purpose of this Special Issue isto discuss recent advancements and innovative applications in the fields ofcomputational biomimetics. With a broad scope, it will cover the application ofCB across various disciplines related to drug discovery and design. Kind regards,Prof. dr. habil. Laszlo BarnaIantovicsAssociate Prof. dr. Fatih OzyurtAssociate Prof. dr. Aleš Zamuda

June 19, 2025

2025-2026 Shanahan Postbac/Undergraduate fellowship at the Allen Institute and University of Washington

by Anton Arkhipov

Dear Colleagues, An exciting opportunity is available for pre-doctoral researchers to work at the interface of data and neuroscience: the 2025-2026 Shanahan Postbac/Undergraduate fellowship at the Allen Institute and University of Washington Computational Neuroscience Center. These roles are open to both current undergraduate and post-baccalaureate students. Student fellows will be mentored by a current Shanahan Fellow, and they will gain hands-on research experience in neural computation, neural networks, and computational modeling/method development. Students will join a vibrant interdisciplinary research community with the opportunity to work with researchers at all levels at University of Washington and Allen Institute. Project descriptions and application link: https://compneuro.washington.edu/training-programs/shanahan-undergraduate-a… Multiple projects are available. If you are interested in bio-realistic simulations of brain circuits, apply for the project with Maria Tikhanovskaya. Best regards, Anton. Anton Arkhipov Investigator, Allen Institute antona(a)alleninstitute.org<mailto:antona@alleninstitute.org> alleninstitute.org<https://alleninstitute.org> brain-map.org<https://portal.brain-map.org/>

June 18, 2025

EBRAINS-Italy training -- BRAin Dynamics AcademY

by Sergio Solinas

*Apologies for cross-posting* * ERRATA CORRIGE of website link* [All details about this training activity can be found online at BRANDY <http://brandy.ebrains-italy.eu/> [https://brandy.ebrains-italy.eu] DEADLINE for EARLY registration 5th of JULY 2025 REGISTRATION fee 200 euro inclusive of lodging and meals. We are excited to announce the EBRAINS-Italy training "BRAin Dynamics AcademY BRANDY" 4-11 September 2025 AlaBirdi - Oristano (ITALY). The training activity will enrol a maximum of 30 students. *Register at this* LINK <https://docs.google.com/forms/d/e/1FAIpQLSdAo7DIgc0rcqPNyocb0pQ27FvfLmbv3wo…> *and upload a short CV and a short motivation letter* School speakers: - Nicolas Brunel University Bocconi (ITALY) - Stefano Ferraina University La Sapienza Rome (ITALY) - Alberto Mazzoni School of Advanced Studies Pisa (ITALY) - Rosanna Migliore CNR IBF Palermo (ITALY) - Mitchell Goldfarb Hunter College NY (USA) - Maurizio Mattia Istituto Superiore di Sanità (ITALY) - Chiara Bartolozzi Italian Institute of Technology (ITALY) - Huifang Wang AIX Marsellie University (FRANCE) - Addolorata Marasco University of Naples (ITALY) - Giovanni Pezzulo University of Pisa (ITALY) - Luca Bologna CNR IBF Palermo (ITALY) - Cosimo Lupo INFN Rome (ITALY) - Gianvito Urgese Politecnico di Torino Turin (ITALY) We will train attendees on advanced experimental methods and electrophysiological data, with a focus on their application in building computational models of single neurons and neuronal networks. We welcome applications from PhD students and Postdoctoral Researchers in a variety of fields, including biology, neurobiology, psychology, physics, engineering, mathematics, and industry professionals with a relevant background. Applicants are expected to have a strong academic background in their discipline, a demonstrated interest in neuroscience, and at least a basic familiarity with computer programming. We will soon post updates about the training organisation. Format: Morning lectures will be complemented with Afternoon Hands-on sessions. Date and Location: September 4th to September 11th, 2025 at the Horse Country Resort Alabirdi - Oristano, Sardinia (ITALY) <https://www.horsecountry.it/en/> Application Deadline: 5 July 2025 Applications: Please visit BRANDY <https://brandy.ebrains-italy.eu/> (corrected link) where you can find more information regarding costs, travel, and lodging. If you have any questions about the school or the application process, please contact smgsolinas(a)uniss.it We look forward to your registration and to welcoming you to the BRAin Dynamics AcademY BRANDY! Best regards, EBRAINS-Italy Training Activity Organizers - Sergio Solinas University of Sassari (ITALY) - Jonathan Mapelli University of Modena and Reggio Emilia (ITALY) - Daniela Gandolfi University of Modena and Reggio Emilia (ITALY) - Paolo Enrico University of Sassari (ITALY) Best regards, Sergio MG Solinas Dip. di Scienze Biomediche Università di Sassari Viale San Pietro 23 07100 - Sassari

June 18, 2025

Call for Participation: International Artificial Intelligence Summer School – IAISS 2025, Sept 21-25, Riva del Sole Resort & SPA @ Tuscany * Early Registration: by June 23 *

by IAISS Organizing Committee

* Apologies for multiple copies. Please forward to anybody who might be interested, thanks! * IAISS2025, A Residential Summer School in AI & Generative AI for Science and Engineering IAISS 2025 is a full-immersion 5-day Summer School in Tuscany on cutting-edge advances in AI and Generative AI with lectures delivered by world-renowned experts. Riva del Sole Resort & SPA @ Tuscany, Italy, Sept 21-25, 2025 https://2025.iaiss.cc iaiss(a)icas.cc REGISTRATION: by June 23 (AoE) https://2025.iaiss.cc/registration/ Oral Presentation Submission Deadline: by June 23 (AoE) Applicant *may* submit (during the Registration Process) a research abstract (max 2 pages; any format) for presentation. School directors and the scientific committee will review the abstracts and will recommend for poster and/or short talk. Abstract must be submitted by June 23 during the registration process. LECTURERS: Each Lecturer will hold up to four lectures on one or more research topics. *Yuki Asano, University of Technology Nuremberg, GermanyPierre Baldi, University of California, Irvine, CA,USALucas Beyer, OpenAI, Zürich, SwitzerlandWessel Bruinsma, Microsoft Research Amsterdam, The NetherlandsSam Buchanan, Toyota Technological Institute at Chicago, USAFloris Geerts, University of Antwerp, BelgiumSven Giesselbach, Fraunhofer Institute - IAIS & Telecom SystemsVicky Kalogeiton, Ecole Polytechnique Paris, FranceThomas Kipf, Google DeepMind, USAYi Ma, University of California, Berkeley, USAQing Qu, University of Michigan, USAAbigail See, Google DeepMind, London, UKMichal Valko, Meta Paris, FranceYaodong Yu, OpenAI, USADaniel Zügner, Microsoft Research Berlin, Germany * TUTORIAL SPEAKERS: *Druv Pai, University of California, Berkeley, USA* https://2025.iaiss.cc/lecturers/ https://2025.iaiss.cc/lectures/ VENUE: https://2025.iaiss.cc/venue/ Riva del Sole Resort & SPA Località Riva del Sole‚ Castiglione della Pescaia (Grosseto) CAP 58043‚ Tuscany‚ Italy p: +39-0564-928111 e: booking.events(a)rivadelsole.it w: https://www.rivadelsole.it/en/ REGISTRATION: https://2025.iaiss.cc/registration/ CERTIFICATE & 8 ECTS: The International Artificial Intelligence Summer School – IAISS 2025 is a full-immersion five-day Summer School at the Riva del Sole Resort & SPA (Castiglione della Pescaia – Grosseto – Tuscany, Italy) on cutting-edge advances in AI and Generative AI with lectures delivered by world-renowned experts. The Summer School provides a stimulating environment for PhD students, Post-Docs, junior academics (only up to assistant professors), early career researchers, and industry leaders (and highly motivated, promising and brilliant Master students / BSc students). Participants will also have the chance to present their results with talks, and to interact with their colleagues, in a convivial, professional and productive environment. PhD students, PostDocs, Industry Practitioners and Junior Academics (only up to assistant professors) will be typical profiles of the IAISS attendants. The Summer School will involve a total of 36–40 hours of lectures, according to the academic system the final achievement will be equivalent to 8 ECTS points for the PhD Students (and some strongly motivated Master Student – BSc Student) attending the Summer School. Language: English. To participate in the IAISS 2025, all attendants must (1/2) register for the school (by June 23, 2025) and (2/2) book accommodation at the school venue, “Riva del Sole Resort & SPA” (by July 23, 2025); all attendants must stay at the “Riva del Sole Resort & SPA”. Once accommodation has been booked at “Riva del Sole Resort & SPA“, the participant must send this information (including the Booking Number) to the IAISS organizing committee (iaiss(a)icas.cc) IAISS is a residential school, so all lecturers and participants must reside in the same Hotel (Riva del Sole Resort & SPA). No exceptions are made. For privacy reasons, the Hotel cannot match people. If you have someone to share the apartment with, please send to the Hotel ( booking.events(a)rivadelsole.it ) the name, surname and email address. Otherwise the solution is to book an apartment in single use. IAISS is organized as a non-profit scientific event. Please note that only IAISS registered participants can book a room (in hotel or apartment) at the Riva del Sole Resort & SPA with the accommodation form attached in the registration email and with the IAISS Discounted Rates. The Booking Office of the Riva del Sole Resort & SPA will verify the names of the participants and the corresponding registration number to confirm the booking. Anyone interested in participating in IAISS 2025 should register as soon as possible: https://2025.iaiss.cc/registration/ See you in Riva del Sole in September! IAISS 2025 Organizing Committees. https://2025.iaiss.cc iaiss(a)icas.cc Obviously, this is only a Call for Participation, to have complete and updated information we recommend you access the relevant website: https://2025.iaiss.cc <https://2025.iaiss.cc> the News Section: https://2025.iaiss.cc/category/news/ <https://2025.iaiss.cc/category/news/> and the FAQ: https://2025.iaiss.cc/faq/ * Apologies for multiple copies. Please forward to anybody who might be interested, thanks! *

June 18, 2025