- Comp-neuro - lists.cnsorg.org

Computational Postdoc - Cold Spring Harbor Laboratory - Long Island, New York

by Engel, Tatiana

The Engel and Churchland labs in the Department of Neuroscience at Cold Spring Harbor Laboratory invite applications from highly motivated candidates for a postdoctoral position working on a collaborative project between the two labs. The position is entirely computational and truly interdisciplinary with equal (50/50) effort in the Churchland (experimental) and Engel (computational) labs. The project’s goal is to unravel functional roles of excitatory and inhibitory neurons in the decision-making microcircuit through computational analyses of large-scale neural activity recordings and biophysical circuit modeling. In particular, we will develop and deploy novel machine learning frameworks for discovering collective network dynamics from large-scale activity recordings in mice with genetically identified excitatory and inhibitory neurons. These data analyses will provide hard constraints for biophysical models of the decision-making microcircuit, which will be then inferred using deep learning methods. We are looking for theoretical/computational scientists to work at the exciting interface of systems neuroscience, machine learning, and biophysics, embedded within the computational and experimental labs. The postdoctoral scientist is expected to exhibit resourcefulness and independence, developing computational models of large-scale neural activity recordings with the goal to elucidate excitatory/inhibitory neural circuits underlying decision making. Interested candidates should e-mail their application to Tatiana Engel (engel(a)cshl.edu<mailto:engel@cshl.edu>) and Anne Churchland (churchland(a)cshl.edu<mailto:churchland@cshl.edu>) as a single pdf file with subject: Postdoc Application. The application file should include: (1) CV with the publication list, (2) a brief description of research interests, (3) contact information for three references. In addition, the candidates should upload their application online at http://cshl.peopleadmin.com/postings/13170 Position requirements: - PhD in neuroscience, physics, mathematics, computer science, engineering or related quantitative discipline - Expertise in scientific programming, e.g., Python, Matlab, C/C++, CUDA - Expertise in statistics, data analyses, and/or machine learning - Experience with deep learning methods is a plus - Experience with database software is a plus - Track record of publications in scientific journals - Effective communication skills, both written and oral - Dedication and passion for solving hard scientific problems -- Tatiana Engel, PhD Assistant Professor Cold Spring Harbor Laboratory 1 Bungtown Road, Cold Spring Harbor, NY (+1) 408 409 3647

Feb. 27, 2018

2 year postdoc : Graph Signal Processing at IMT Atlantique

by Nicolas Farrugia

IMT Atlantique has an opening for a fully-funded two-year postdoctoral fellowship open immediately and starting no later than June 2018, to work on Graph Signal Processing and potential applications to Neuroimaging. The host team is Br.A.In. (Brain-inspired Artificial Intelligence http://www.brain.bzh) and is in the Brest Campus. The call for the position can be downloaded here : http://recherche.telecom-bretagne.eu/brain/wp-content/uploads/2018/02/postd… Scientific context Several application domains rely on multivariate spatiotemporal signals such as transportation networks, energy network, social networks or neural networks. Under the natural assumption that the signal properties are related to the topology of the graph where they are supported, graph signal processing (GSP) offers algorithms that fruitfully leverage this relational structure, and can make inferences about these relationships when they are only partially observed. Developing GSP tools specifically intended to advance modeling and analytics of multivariate signals is a new, fertile area of investigation. In particular, the positionning of the Br.A.In. project regarding GSP is targetted towards the following issues: (1) finding optimal graph representations and adapting machine learning approaches accordingly, (2) generalizing GSP approaches to dynamic graphs in order to fully capture the spatiotemporal complexity of multivariate signals, and finally (3) developing new approaches to enhance the understanding and interpretability of machine learning and deep learning methods using metrics derived from GSP. We are seeking a candidate that will contribute to our research effort on GSP by proposing innovative theoretical approaches, or extensions to existing approaches, related to at least one of the aforementioned issues. Our main target application is the analysis, decoding and interpretability of Neuroimaging data (Electroencephalography EEG or functional Magnetic Resonance Imaging fMRI), but candidates with interest or background in other application domains are encouraged to apply as well. Details and requirements The present postdoctoral fellowship is funded by the Sustainable Attractivity Strategy of the Brittany Region, with the goal of attracting high profile junior researchers from all over the world, offering exceptional conditions for long-term academic development. IMT Atlantique is a public technological university focusing on the training of engineers at the MSc. level and junior researchers at the PhD level. Being a technological university, IMT Atlantique benefits from a advantageous status compared to french public universities. As such, we offer very competitive salary packages, with postdoc wages corresponing to a junior assistant professor level. Successful candidates will also benefits from 49 annual paid holidays, as well as access to multiple benefits from the institutions' union (such as campus activities or sea sports). In addition, living costs in the Brest bay area are exceptionally low, with a high quality of life, and the Brest campus of IMT Atlantique is ideally located at the sea front. The position is open immediately and must start no later than June 2018, for a duration of 24 months. The postdoc fellowship is accompanied with overheads for travel expenses covering (a) the participation to international conferences, (b) article processing charges for open-access publications and (c) acquisition of a computation server dedicated to the postdoc project. The postdoc fellowship will be fully devoted to his research projects, and may optionally (but will not be required to) contribute to teaching activities in machine learning, computer science, signal processing or electronical engineering. Candidates must have defended a Ph.D. related to machine learning or computer science, or signal/image processing. Candidates with a PhD in neuroimaging with solid programming skills and a strong interest for machine learning are also welcome to apply. An additional requirement pertains to the attractivity strategy related to the regional funding; in order to attract international applications, candidates must have spent a minimum 12 months outside France after June 2014. Please send your CV, contacts for two references, as well as a cover letter to nicolas.farrugia(a)imt-atlantique.fr . Nicolas Farrugia Associate professor IMT Atlantique - Department of electronics +33 (0) 2 29 00 16 53

Feb. 27, 2018

Postdoc in computational neuroscience at University of Sheffield

by Hannes Saal

Postdoc in computational neuroscience at the University of Sheffield Closing date: 26th March 2018 We are looking to recruit a Research Associate to work on the Wellcome Trust funded project Modelling synaptic and intrinsic plasticity in primate somatosensory cortex. In short, the project will investigate somatosensory plasticity in human cortex and specifically the effect of different learning rules on somatosensory representations. To this end, you will develop a computational framework that will simulate the effects of different plasticity rules on sensory cortical representations and make predictions that can be empirically tested using existing fMRI paradigms. The project involves close collaboration with partners at UCL and Oxford, who will gather empirical data using a state-of-the-art neuroimaging setup. This post is suitable for a candidate with a background in computational neuroscience, or a closely related discipline. The ideal candidate will have experience with the analysis and simulation of large-scale spiking neuron models, mathematical models of plasticity, and/or self-organizing systems. A significant part of the project will involve collaborating with our partner helping to guide empirical data collection. As such, a background in neuroscience is highly desirable, with knowledge of tactile processing, cortical plasticity, and/or neuroimaging especially preferred. For more info, please see http://www.jobs.ac.uk/job/BHY156/research-associate/ or contact Dr Hannes Saal (h.saal(a)sheffield.ac.uk) -- Dr Hannes P Saal Lecturer in Cognitive Science and Computational Modelling Active Touch Laboratory (co-director) Department of Psychology & Sheffield Robotics University of Sheffield Pam Liversidge Building F.05 Sheffield S1 3JD United Kingdom Tel: +44 (0)114 222 6504 Web: https://www.sheffield.ac.uk/psychology/staff/academic/hannes_saal

Feb. 27, 2018

REMINDER: Abstract Submission for CNS*2018 closes March 5, 2018

by Sharon Crook

Registration and abstract submission are open for CNS*2018 in Seattle, USA, July 13-18. The deadline for abstract submission is March 5, 2018. The main meeting begins on the evening of Friday July 13 and runs through Monday July 16. It will be preceded by a day of tutorials (Friday July 13) and followed by two days of workshops (Tuesday July 17 and Wednesday July 18). Invited Keynote Speakers: Eve Marder, Brandeis University Nancy Kopell, Boston University Daniel Wolpert, University of Cambridge Rajesh Rao, University of Washington Note that one of the authors must register as sponsoring author for the main meeting before abstract submission is possible. In case the abstract is not accepted for presentation, the registration fee will be refunded. Abstract Submission: http://www.cnsorg.org/cns-2018-abstract-submission Registration: https://ocns.memberclicks.net/index.php?option=com_mc&view=mc&mcid=form_243… For up-to-date conference information, please visit: http://www.cnsorg.org/cns-2018 ---------------------------------------- OCNS is the international member-based society for computational neuroscientists. Become a member to be eligible for travel awards and more. Visit our website for more information: http://www.cnsorg.org.

Feb. 26, 2018

Post-doctoral position in machine learning for computational psychiatry at the University of Munich (LMU)

by Moritz Grosse-Wentrup

We are seeking a highly creative and motivated post-doctoral researcher to work at the intersection of machine learning and computational psychiatry. The position will be based in the group of Moritz Grosse-Wentrup in the Department of Statistics [1]. The successful candidate will closely interact with the group of Nikolaos Koutsouleris in the Department of Psychiatry and Psychotherapy [2]. To apply, you should have a strong passion for developing and employing machine learning methods that make a difference in patients' lives. Also, you should have (or be about to obtain) a Ph.D. in Computer Science, Statistics, Information Engineering, Psychology/Psychiatry (with a strong analytical background), or a related field. You should have an excellent track record in machine learning or data science, which is backed up by publications in major journals or papers at top conferences. Prior experience in psychology or psychiatry would be advantageous but is not a strict requirement. You need to be fluent in written and spoken German. Your job duties include . performing independent research at the intersection of machine learning and computational psychiatry, . teaching courses and seminars to students in statistics and computer science, . and contributing to an interdisciplinary grant proposal on machine learning for computational psychiatry. Salary is according to TV-L E13 (100%) [3]. Part-Time employment is possible. The initial appointment will be for one year, with a potential extension contingent on funding. The starting date is flexible. Screening of applications will commence on March 18, but we will consider applications until the position is filled. The University of Munich is one of Europe's premier academic and research institutions [4]. The recently established elite graduate program in Data Science [5] bundles research in data science across various institutes and attracts excellent students from all over the world. Besides, Munich is a beautiful metropolis with high recreational value. Your application should include a cover letter (~one page), a CV, and contact information of at least two referees. Please submit your application documents (as one PDF file) to mgw(a)stat.uni-muenchen.de. We particularly welcome applications by female candidates. Disabled applicants will receive preference over equally qualified non-disabled applicants. If you have any questions before submitting your application, please contact Prof. Dr. Moritz Grosse-Wentrup Department of Statistics Ludwig-Maximilians-Universität München Ludwigstr. 33, 80539 München, Germany Phone: +49-89-2180-3847 mgw(a)stat.uni-muenchen.de Links: [1] http://www.datascience.statistik.uni-muenchen.de [2] http://www.klinikum.uni-muenchen.de/Klinik-und-Poliklinik-fuer-Psychiatrie-… [3] http://oeffentlicher-dienst.info/tv-l/west/ [4] https://www.timeshighereducation.com/world-university-rankings/lmu-munich [5] http://www.m-datascience.mathematik-informatik-statistik.uni-muenchen.de

Feb. 26, 2018

PhD student/postdoc in Sensory and Behavioral Neuroscience

by Gjorgjieva, Julijana

The labs of Julijana Gjorgjieva (Max Planck Institute for Brain Research, Frankfurt, Germany) and Ilona Grunwald Kadow at the TUM School of Life Sciences, Technical University of Munich, Germany invite applications for a fully-funded position (Postdoc or PhD student). We are looking for highly-motivated individuals with a strong quantitative background (in mathematics, physics, engineering, computer science, or related fields), experience in programming and data analysis, and a desire to develop cutting-edge experimental techniques. Previous background in neuroscience, imaging or behavioral analysis is a plus! Julijana will be at Cosyne (March 1-7) so please get in touch to discuss details. The project will examine the neural basis of need and effort-based decision-making in a collaboration between the Gjorgjieva lab, which develops theoretical models of neural circuit processing, and the Grunwald Kadow lab, which studies neural circuits underlying sensory processing and decision making in animal models. The project aims to uncover circuit principles and behavioral readouts of motivation, persistence, and value perception as a function of internal state or experience (e.g. hunger). In particular, the Grunwald Kadow lab is collecting rich data sets of behavioral trajectories of single Drosophila flies as well as functional imaging data (i.e. multiphoton and light-sheet) of neuronal populations (e.g. modulatory neurons). The project will aim to develop advanced analysis techniques that extract key statistical features of the behavioral trajectories and imaging data, and build mathematical models that reproduce the data and make new predictions to be further tested experimentally. By combining behaviour, genetics and imaging, we will also develop neural circuit models that involve several brain areas, including sensory brain areas and higher cognitive regions of the fly brain (i.e. mushroom body). References: S. Sayin J. Gjorgjieva, I. C. Grunwald Kadow (2018). A neural circuit arbitrates between perseverance and reward in hungry Drosophila. BioRxiv doi.org/10.1101/259119<http://doi.org/10.1101/259119> J. Gjorgjieva, G. Drion and E. Marder (2016). Computational implications of biophysical diversity and multiple timescales in neurons and synapses for circuit performance. Curr Opin Neurobiol 37:44-52. Lewis L, Siju KP, Aso Y, Friedrich AB, Bulteel AJB, Rubin GM, Grunwald Kadow IC (2015). A higher brain circuit for immediate integration of conflicting sensory information in Drosophila. Current Biology PMID: 26299514, doi: 10.1016/j.cub.2015.07.015 Application: The position will be based at the Technical University of Munich, with frequent visits to the Max Planck Institute for Brain Research in Frankfurt, two of the most exciting and international cities in Germany. Recommended application deadline: March 20, 2018. Applicants will be considered until the position is filled. For further information please visit: http://www.cns.wzw.tum.de and http://www.neuro.wzw.tum.de or email gjorgjieva(a)brain.mpg.de and ilona.grunwald(a)tum.de. To apply, please email the following to: neuro(a)wzw.tum.de (ref. GGK application) 1. A curriculum vitae 2. A letter of motivation explaining your scientific interests, your strengths when working on a problem, why us etc. 3. Contact details for 2 referees 4. A written sample of scientific research, e.g. a manuscript, thesis, or code etc. ----------------------------------------- Julijana Gjorgjieva, PhD Research Group Leader Max Planck Institute for Brain Research Max-von-Laue-Str. 4, Frankfurt Assistant Professor of Computational Neuroscience Technical University of Munich, WZW Freising office: +49 69 850033 3600 http://cns.wzw.tum.de

Feb. 25, 2018

Postdoctoral Neuroimaging Fellowship

by Stacie Warren

Dear Colleagues, The Clinical Cognitive and Affective Neuroscience Program directed by Stacie L. Warren, PhD, and Tilman Schulte, PhD, at Palo Alto University is seeking a neuroimaging postdoctoral scholar. This is an exciting opportunity to work on a range of cognitive and affective studies that focus on executive function, emotion regulation, stress responsivity, reward processing, and aging on neural circuitry. Populations of interest include healthy adults, adults with or at risk for developing psychopathology, and neurological disorders. The postdoctoral fellow’s primary responsibility is to analyze neuroimaging data (resting-state and task-based fMRI) and to develop and apply novel data analysis techniques. Additionally, Drs. Warren and Schulte are committed to fostering the postdoctoral scholar’s research independence through first-authored manuscript writing and grant preparation. The start date of the position is as soon as possible, but no later than August 1, 2018. JOB DESCRIPTION Essential Functions - Analyzing neuroimaging data - Developing and implementing statistical/mathematical modeling (e.g., machine learning algorithms) to characterize high-dimensional datasets - Improving software/scripts that implement algorithms for data quality control, preprocessing, analysis, and management - Manuscript development Qualifications - PhD in psychology, neuroscience, cognitive science, computational neuroscience, bioinformatics, or a related field by the time of appointment - Strong background in quantitative analysis - Proficiency with at least one neuroimaging analysis software package (e.g., FSL, SPM, Freesurfer, AFNI, etc.) - Proficiency in programming (e.g., Matlab, Python, C/C++, java) and/or shell scripting - Proficiency with Linux OS and file system - Experience with any of the following: signal and image processing, machine learning, statistical/mathematical modeling - Excellent analytical, interpersonal, organizational, and spoken/written English communication skills are expected - A two-year commitment is required This is a full-time position with a competitive salary and benefits. *To apply, send your CV (including 3 academic references), and a cover letter stating your interests and qualifications to **swarren(a)paloaltou.edu* <swarren(a)paloaltou.edu>*.* Review of applications will begin immediately. -- Stacie L. Warren, Ph.D. Assistant Professor Clinical Psychology Ph.D. Program Palo Alto University 1791 Arastradero Rd. Palo Alto, CA 94304 email: swarren(a)paloaltou.edu <staciewarren3(a)gmail.com>

Feb. 24, 2018

Sense 2 Synapse conference 2018, May 12th, The Rockefeller University, New York City, Registration open

by Christoph Kirst

Dear Neuroscientists, We would like to invite you to join us for this year's*Sense 2 Synapse* which will be held on*Saturday, May 12th, 2018* in the Carson Family Auditorium at *The Rockefeller University, New York City.* The conference is an annual event for scientists working on the biology of sensory transduction, subsequent neural processing and perception. The conference will be free this year but you will be asked to confirm your participation a week before the event. We have a outstanding list of key-note speakers: *Maria Neimark Geffen* (University of Pennsylvania) *Alipasha Vaziri* (The Rockefeller University) *Nathaniel Sawtell *(Columbia University) *Eve Marder* (Brandeis University) We will complement the program by 8 talks from graduate students and postdocs selected from abstract submissions and a poster session. More information can be found on our website: http://sense2synapse.com and you can register here: https://sites.google.com/view/sense2synapse2018/registration_1?authuser=0 Join us for a great day of science, discussions and nice food! The organizing team, Christoph Kirst Florian Berger Ben Urban Kanaka Rajan Jeremie Barral -- Christoph Kirst Fellow for Physics and Biology Center for Theoretical Studies and Kavli Physics Fellow Kavli Neural Systems Institute The Rockefeller University 1230 York Avenue, New York, NY 10065 USA +1 212 327 8835 :: ckirst(a)rockefeller.edu

Feb. 24, 2018

PhD Position in Computational Neuroscience, Ruben Moreno-Bote, Barcelona, Spain

by Ruben Moreno Bote

PhD Position in Computational Neuroscience, Ruben Moreno-Bote Lab Center for Brain and Cognition, University Pompeu Fabra, Barcelona, Spain 1 fully funded PhD position is available in the group of Theoretical and Cognitive Neuroscience of Ruben Moreno-Bote in the Center for Brain and Cognition at the University Pompeu Fabra, Barcelona, Spain. We are looking for excellent candidates with Physics, Mathematics or Machine Learning background, ideally with knowledge of Neuroscience or Computational Neuroscience, and interested in theory and applications. We will also consider candidates with Psychology background with strong mathematical skills and interested in modeling. The candidate will develop state of the art mathematical techniques and models to understand neuronal dynamics and coding and will have access to multielectrode recording neural data. He/she could also be involved in the design of monkey and human behavioral experiments and the development of models of visual perception, decision making and working memory. The candidate will benefit from the stimulating environment of Barcelona area in Theoretical and Systems Neuroscience and will have the opportunity of enjoying a lively city. Our lab (https://www.upf.edu/web/ruben-moreno-bote) forms part of a larger network of neuroscience labs in Barcelona (http://www.barcelonaneuroscience.com) Financial support is provided by the Howard Hughes Medical Institute and the Spanish MINECO. APPLICATION: A full CV in pdf format and an extract of grades for degree and master studies should be sent to the following address: ruben.moreno(a)upf.edu DEADLINE: until the position is filled STARTING DATE: any time between September 2018 and January 2019 -- Rubén Moreno Bote Serra Húnter & ICREA Academia Professor Center for Brain and Cognition & Dept. of Information and Communications Technologies University Pompeu Fabra Campus Ciutadella, Building 24, office 331 Ramon Trias Fargas, 24-27 08005 Barcelona, Spain http://www.upf.edu/pdi/ruben-moreno-bote

Feb. 22, 2018

Seeking Grad students --Fall 2018

by Stephen Jose Hanson

Seeking Cognitive and/or Computational Neuroscience Graduate Students Accepting applications Fall 2018. Rutgers University. We are seeking graduate students interested in the study of cognitive processes (e.g, memory, attention, language, category learning, Neural Networks) using neuroimaging techniques and computational modeling (Deep Learning). Our lab is focused on understanding the dynamics underlying brain response during rest (resting state) and during the performance of cognitive tasks. Within this overall framework, we have conducted research with both neurotypical and clinical populations (e.g., addiction, ASD, GAD), and have conducted studies focused on memory, language processing, preference decisions, face processing, and event perception. Our lab was jointly involved in the development of MVPA as well as IMaGES and other brain connectivity methods (lab has been continuously funded by NSF, McDonnell Foundation and NIH). Dr. SJ Hanson (Psychology, RUBIC) and Dr. C Hanson (CMBN, RUBIC) directs the lab and participates in both the Psychology graduate program and the Behavioral Neuroscience program. Dr. SJ Hanson is also Director of the Rutgers University Brain Imaging Center (RUBIC http://rubic.rutgers.edu) RUBIC houses a Siemens 3T Trio MR scanner to collect MR data and a variety of resources are available to complete any MR neuroimaging study. The lab also has a compute cluster with dual P100 GPUs as well as access to larger clusters available on various campuses. The campus is well serviced by train, subway, and bus service and is surrounded by a diversity of shops and restaurants. Manhattan is a twenty minute train ride from the Newark Penn Station and offers world class cultural and entertainment opportunities. For further inquiry or arrange a visit to our lab and RUBIC please send email to jose(a)rubic.rutgers.edu

Feb. 22, 2018