- Comp-neuro - lists.cnsorg.org

SUBMIT YOUR WORK TO COMPLEX NETWORKS 2023 BEFORE SEPT. 02, 2023

by Hocine Cherifi

*12* *th **International Conference on Complex Networks & Their Applications* Menton Riviera <https://www.menton-riviera-merveilles.co.uk/>, France November 28 - 30, 2023 COMPLEX NETWORKS 2023 <https://complexnetworks.org/> You are cordially invited to submit your contribution until *September 02, 2023*. *SPEAKERS* · Michael Bronstein <https://www.cs.ox.ac.uk/people/michael.bronstein/> University of Oxford UK · Kathleen Carley <https://www.cylab.cmu.edu/directory/bios/carley-kathleen.html> Carnegie Mellon University USA · Manlio De Domenico <https://manliodedomenico.com/> University of Padua Italy · Danai Koutra <http://web.eecs.umich.edu/~dkoutra/> University of Michigan USA · Romualdo Pastor-Satorras <http://www.fen.upc.edu/~romu/> Univ. Politècnica de Catalunya Spain · Tao Zhou <https://scholar.google.com/citations?user=MXgWgmEAAAAJ&hl=en> USTC China *TUTORIALS* · Tiago de Paula Peixoto <https://skewed.de/tiago> CEU Vienna Austria · Maria Liakata <https://www.turing.ac.uk/people/researchers/maria-liakata> Queen Mary University of London UK *PUBLICATION* Full papers (not previously published up to 12 pages) and Extended Abstracts (about published or unpublished research up to 4 pages) are welcome. · *Papers *will be included in the conference *proceedings edited by Springer* · *Extended abstracts* will be published in the *Book of Abstracts (with ISBN)* Extended versions will be invited for publication in *special issues of international journals:* o Applied Network Science <https://appliednetsci.springeropen.com/> edited by Springer o Advances in Complex Systems <https://www.worldscientific.com/toc/acs/24/02> edited by World Scientific o Complex Systems <https://www.complex-systems.com/about/> o Entropy <https://www.mdpi.com/journal/entropy> edited by MDPI o PLOS <https://journals.plos.org/plosone/> one <https://journals.plos.org/plosone/> o Social Network Analysis and Mining <https://link.springer.com/journal/13278> edited by Springer *SUBMISSION* https://complexnetworks.org/submission/ *TOPICS* *Topics include, but are not limited to: * o Models of Complex Networks o Structural Network Properties and Analysis o Epidemics o Community Structure o Motifs o Network Mining o Network embedding o Machine learning with graphs o Dynamics and Evolution Patterns of Complex Networks o Link Prediction o Multilayer Networks o Controllability o Synchronization o Visual Representation o Large-scale Graph Analytics o Social Reputation, Influence, and Trust o Information Spreading in Social Media o Rumour and Viral Marketing in Social Networks o Recommendation Systems o Financial and Economic Networks o Mobility o Biological and Technological Networks o Mobile call Networks o Bioinformatics o Earth Sciences Applications o Resilience and Robustness of Complex Networks o Networks for Physical Infrastructures o Networks, Smart Cities and Smart Grids o Political networks o Supply chain networks o Complex networks and information systems o Complex networks and CPS/IoT o Graph signal processing o Cognitive Network Science o Network Medicine o Network Neuroscience o Quantifying success through network analysis o Temporal and spatial networks o Historical Networks o Graph-Based Natural Language Processing *GENERAL CHAIRS* Hocine Cherifi (University of Burgundy, France) Luis M. Rocha (Binghamton University, USA)

July 6, 2023

Announcing the fourth Canadian Computational Neuroscience Spotlight!

by Scott Rich

Dear Comp-Neuro mailing list members, We are pleased to announce the fourth edition of the Canadian Computational Neuroscience Spotlight (CCNS) <https://www.crowdcast.io/c/ccnsv4> will take place this fall, October 5 and 6. The meeting will once again take place entirely virtually using the Crowdcast platform, and parlay the savings from this virtual setting into no registration fees for attendees. CCNS was created in the immediate aftermath of the initial COVID-19 lockdowns, which caused the cancellation of multiple conferences within the Canadian neuroscience community. As one of the first brand-new meetings created with the virtual space in mind <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008…>, CCNS distinguished itself by exploiting the online setting to engage an international audience, increase content accessibility through no registration fees and permanently available replays, and place an added spotlight on trainee contributions. Two successful follow-up editions of the meeting took place in 2021 and 2022. CCNSv4 will highlight three fantastic keynote speakers: Dr. Rick Adams <https://www.ucl.ac.uk/mental-health/mental-health-awareness-week/meet-dr-ri…>, Dr. Jeremie Lefebvre <https://www.uottawa.ca/brain/people/lefebvre-jeremie>, and Dr. Sarah Muldoon <https://www.buffalo.edu/cas/math/people/faculty/muldoon.html>. The keynote talks will be complemented by interactive workshop sessions led by our organizing committee. The remainder of the program will highlight trainee contributions, both through spotlighted talks and parallel sessions. The preliminary program can be seen after registration through the Crowdcast platform <https://www.crowdcast.io/c/ccnsv4>, and further details will be added to our homepage (ccnsmeeting.ca) in the coming weeks. Trainees interested in presenting are encouraged to first register for the conference via Crowdcast (crowdcast.io/c/ccnsv4 <https://www.crowdcast.io/c/ccnsv4>) and then complete this Google Form <https://docs.google.com/forms/d/e/1FAIpQLSeev-EA5ccwKapzRV43xD4NfDYGyDeAiWp…>. Submissions received by 5 p.m. EDT on September 1 will be considered for longer “spotlight” presentations. We anticipate all submissions that reasonably fall under the broad banner of “computational neuroscience” will be accepted unless demand far exceeds our expectations. A final schedule for the meeting, including the schedule of trainee talks, will be made available no later than September 18. Please feel free to reach out to the organizing committee if you have any questions about this meeting, and we look forward to seeing you at CCNSv4! Sincerely, The CCNS Organizing Committee: Scott Rich <http://scottrich.strikingly.com/>, Ph.D. Research Fellow, SickKids Research Institute. Andreea Diaconescu <https://cognemo.com/>, Ph.D. Independent Scientist, Krembil Center for Neuroinformatics at CAMH. John Griffiths <https://t.co/AlUQymEUae?amp=1>, Ph.D. Independent Scientist, Krembil Center for Neuroinformatics at CAMH. Milad Lankarany <https://sites.google.com/view/lnsbsp/home>, Ph.D. Scientist, Krembil Research Institute.

July 5, 2023

Invitation for Hands-on Tutorial on PyNN at CNS*2023 Inbox

by CHITARANJAN MAHAPATRA

*Dear all,* *We are delighted to announce that a half-day tutorial titled "Hands-on Tutorial on PyNN: A Simulator-Independent Language for Building Neuronal Network Models" will be held at the 32nd Annual Computational Neuroscience Meeting (CNS*2023 conference) in Leipzig, Germany. We invite all registered participants to join the tutorial, which will take place on the first day of the meeting, 15 July 2023, just before the main event.* *Computational neuroscientists have developed a diversity of software platforms for simulating neural network models at different scales. However, each simulator has its own programming or configuration language, leading to considerable difficulty in porting models from one simulator to another. A common programming interface to multiple simulators would help to reduce or eliminate the problems of simulator diversity while retaining the benefits. PyNN is such an interface, making it possible to write a simulation script once, using the Python programming language, and run it without modification on any supported simulator (currently including NEURON, NEST, Brian, and the SpiNNaker and BrainScaleS neuromorphic hardware systems).* *Prerequisites:* *Basic familiarity with the Python programming language* *Useful links:* *Main website: https://ebrains.eu/service/pynn/ <https://ebrains.eu/service/pynn/>* *Documentation: http://neuralensemble.org/docs/PyNN/ <http://neuralensemble.org/docs/PyNN/>* *Download: https://pypi.org/project/PyNN/ <https://pypi.org/project/PyNN/>* *Organizers:* *Chitaranjan Mahapatra (Neuroinformatics Group, Paris-Saclay Institute of Neuroscience, CNRS, Paris-Saclay University, France)* *Shailesh Appukuttan (Neuroinformatics Group, Paris-Saclay Institute of Neuroscience, CNRS, Paris-Saclay University, France)* *Andrew Davison (Neuroinformatics Group, Paris-Saclay Institute of Neuroscience, CNRS, Paris-Saclay University, France)* *Speakers/Instructors:* *Chitaranjan Mahapatra, Speaker (Paris-Saclay Institute of Neuroscience, France)* *Nitin Anisetty, Instructor (Indian Institute of Technology Bombay, India)* *We also invite all tutorial participants to create a free EBRAINS account using an institutional email address. By doing so, you will gain complete access to EBRAINS tools and services.* *Best regards,* *Chitraranjan* ------------------------------------------------------------------------------------------------- Chitaranjan Mahapatra

July 5, 2023

Tutorial "Using open tools to build efficient workflows for data access, management and analysis" at CNS*2023

by Michael Denker

We would like to take the opportunity to invite you to our hands-on tutorial titled "Using open tools to build efficient workflows for data access, management and analysis" which will be held in the morning tutorial session on July 15, 2023 of this year's CNS*2023 conference in Leipzig, Germany (https://www.cnsorg.org/cns-2023) The tutorial is open to all registered participants, and assumes only basic experience with the Python programming language. Tutorial materials will be made available during the session. In order to interactively follow the tutorials online, we suggest to create a free EBRAINS account (https://www.ebrains.eu/page/sign-up) in advance. Synopsis: Neuroscientists today face challenges in managing the growing volume and complexity of data generated through rapid technological and methodological advancements and sophisticated experimental paradigms. Data management tools and methods provide indispensable solutions for researchers to efficiently handle, organize, and analyze datasets, facilitating model validation, refinement, and simulation, while fostering collaborations. This tutorial presents examples combining multiple tools synergistically into a complete digitized workflow to help researchers manage and control data and analysis processes. - GIN is a platform for version-controlled (git and git-annex) data management and collaboration. It supports any file types and folder structure, provides web and command-line access, provides an option for local installation, and services including format validation and data publication (DOI). - odML is an open, lightweight, and flexible format that provides a common schema (with implementations in XML, JSON, and YAML) to collect, organize and share metadata in a human- and machine-readable way. - NIX is a lean data model and file format for storing fully annotated scientific datasets, i.e., the data together with rich metadata (odML) and their relations in a consistent, comprehensive format. - Neo provides programmatic data objects for working with and representing electrophysiological data and can read data from many proprietary formats. In combination with NIX, Neo makes electrophysiological data interoperable with generic analysis scripts, tools, and services. - Elephant provides a large portfolio of standard and advanced methods for analyzing data from neuronal spike trains or time series data, such as LFPs. The Neo data model makes them easily accessible to scientists and applications. - Alpaca enables simple capture of human-readable provenance of the data processing workflow. Organizers: - Reema Gupta, Faculty of Biology, Ludwig-Maximilians-Universität München - Moritz Kern, Institute of Neuroscience and Medicine (INM-6/10), Jülich Research Centre - Michael Denker, Institute of Neuroscience and Medicine (INM-6/10), Jülich Research Centre - Thomas Wachtler, Faculty of Biology, Ludwig-Maximilians-Universität München

July 5, 2023

Fully funded PhD fellowships in computational neurosciences (Benoit Cottereau’s team, Cerco, CNRS UMR 5549 in Toulouse and IPAL IRL 2955 in Singapore) on spatial cognition with spiking neural networks

by COTTEREAU Benoît

Fully funded PhD fellowships in computational neurosciences (Benoit Cottereau’s team, Cerco, CNRS UMR 5549 in Toulouse and IPAL IRL 2955 in Singapore) on spatial cognition with spiking neural networks Starting date: Second semester of 2023 Supervisors: Benoit Cottereau, research director at CNRS (Contact: benoit.cottereau(a)cnrs.fr<mailto:benoit.cottereau@cnrs.fr>), in close collaboration with Robby Tan, associate professor at National University of Singapore (NUS) Keywords: Computational neurosciences, Spatial cognition, Artificial intelligence (AI), Vision, Spiking neural networks, Event-based cameras. Fully funded PhD fellowships are available to work at the CNRS (Cerco laboratory in Toulouse and also IPAL in Singapore) under the supervision of Benoit Cottereau (CNRS research director), in close collaboration with Robby Tan (assistant professor at NUS, Singapore). The aim of the project is to develop computational models of spatial cognition in humans (e.g., for depth/motion perception or navigation). In order to reproduce the very low energy consumption of visual information processing in biological systems, these models will be based on spiking-neural networks (SNNs) and will process data collected from event-based cameras. These models will be evaluated with respect to biological data (their responses will be compared to those observed in neural recordings and/or in behavioural experiments). The candidates should be willing to work in an international environment which involves Singapore and France, have a good level in English, very good programming skills and be interested in neurobiology. Some knowledge in neurosciences/ cognitive sciences would be a plus. The research will mainly take place in Toulouse, a student city (Toulouse is the second university hub in France) with high quality of life located in the south west of France (close to the Pyrenees, the Mediterranean Sea and the Spanish border). Long stays in Singapore (a multicultural and attractive city of south-east Asia) are also planned. Each of the three positions will be fully funded during the three years of the PhD, with standard French salaries. Applications should be sent to benoit.cottereau(a)cnrs.fr<mailto:benoit.cottereau@cnrs.fr>, including a CV and 2 names of references. **************************************************************************************************** Benoit R. Cottereau, PhD, HDR, CNRS Research director (DR2) at the Brain and Cognition Research Center (CerCo, CNRS, UMR 5549, Toulouse): http://cerco.cnrs.fr/page-benoit-cottereau/ Director of the SV3M team (Spatial Vision in Man, Monkey and Machine): http://cerco.cnrs.fr/en/sv3m-spatial-vision-in-man-monkey-machine/ Supervisor of the Integrative Neurosciences master program of Toulouse III University e-mail: benoit.cottereau(a)cnrs.fr phone: (+33)-5-62744520

July 5, 2023

Postdoctoral Researcher position at Goettingen Campus Institute for Dynamics of Biological Networks, University of Goettingen

by von Behren, Christina

Dear Scientists, The Göttingen Campus Institute for Dynamics of Biological Networks (CIDBN)<https://www.uni-goettingen.de/de/608362.html> invites applications for a position of Postdoctoral Researcher in Computational Biophysics (all genders welcome) The position will be full-time (currently 39,8 hours/week), German pay grade 13 TV-L, starting as soon as possible. The CIDBN Department "Physics of Biological Systems", headed by Prof. Fred Wolf, offers a fixed-term contract until June 30, 2025 with the perspective of an extension commensurate with building a competitive track record at the frontier of computational biophysics and neural circuit theory. Information is processed in brain circuits through the coordinated action of large-scale circuits of neurons and synapses. Ultimately, it is the nano-scale molecular architecture of neuronal synapses that can make or break the power of neural circuit computation. Progress in a broad suite of nanoscopy techniques is currently uncovering the molecular-level design of synapses subserving functions such as working memory or sensory coding. The spatio-temporal operation of these nano-machines and the efficiency of their design, however, remain to be understood and are core research aims of the Göttingen Collaborative Research Centre (CRC) 1286 "Quantitative Synaptology"<https://www.sfb1286.de/?lang=en>. We are inviting applications from theoretical biophysicists, molecular systems biologists, or computational scientists with an ambition to pioneer computational studies of synaptic functional design. We offer a stimulating environment of theoretical neuroscientists, neural data-scientists, and cutting-edge experimentalists associated with CRC 1286. In addition, the institute provides dedicated support for high-performance computing. We are dedicated to supporting the growth of original research personalities at the frontier of computational science and neural circuit theory. The successful applicant will hold an excellent PhD in physics, applied mathematics, computer science, or equivalent, and have a strong interest in high-performance computing in neuroscience or cellular systems biology. We expect excellent analytical and coding skills, interest in working in a transdisciplinary team as well as excellence in scientific writing and reasoning. Experience in non-equilibrium statistical physics, stochastic dynamics, membrane biophysics, ion-channel and biochemical kinetics, buffered Ca-diffusion, and Ca-exocytosis coupling would be advantageous. The Göttingen Campus is a leading center of neuroscience in Europe hosting numerous internationally renowned research institutions, including the University, the University Medical Center, two life science Max Planck Institutes, the European Neuroscience Institute, the German Primate Center, and the Bernstein Center for Computational Neuroscience Göttingen. The CIDBN is a newly founded transdisciplinary institute whose mission is to foster frontier research at the border of the exact and biological sciences. The University of Göttingen is an equal opportunities employer and places particular emphasis on fostering career opportunities for women. Qualified women are therefore strongly encouraged to apply. The university has committed itself to being a family-friendly institution and supports their employees in balancing work and family life. The mission of the University is to employ a greater number of severely disabled persons. Applications from severely disabled persons with equivalent qualifications will be given preference. Please send your e-mail application in one single PDF-document, including a letter of motivation, your curriculum vitae with a list of publications, copies of your certificates and contact information of two references to cidbn(a)uni-goettingen.de<mailto:cidbn@uni-goettingen.de> (subject: Postdoc CIDBN). The position remains open until filled. Georg-August-Universität Göttingen Göttingen Campus Institute for Dynamics of Biological Networks Heinrich-Düker-Weg 12, 37073 Göttingen. If you have any questions, please contact Prof. Fred Wolf via e-mail: fred.wolf(a)ds.mpg.de<mailto:fred.wolf@ds.mpg.de>. Please note: With submission of your application, you accept the processing of your applicant data in terms of data-protection law. Further information on the legal basis and data usage is provided in the Hinweisblatt zur Datenschutzgrundverordnung (DSGVO) https://www.uni-goettingen.de/hinweisdsgvo <https://www.uni-goettingen.de/hinweisdsgvo%20> Best regards, Christina von Behren ------ Goettingen Campus Institute for Dynamics of Biological Networks Bernstein Center for Computational Neuroscience Goettingen University of Goettingen Heinrich-Dueker-Weg 12 37073 Goettingen Germany Tel.: +49-(0)551-39-26674

July 4, 2023

PLOS Complex Systems is coming!

by Hocine Cherifi

View this email in your browser <https://view.e.plos.org/?qs=dee8047ee42f8224301af96522f8b69a270a53ce74ede07…> [image: PLOS] <https://click.e.plos.org/?qs=e061474313b570c1a547d4ee8221ae589c93c76242c1d0…> *Announcing PLOS Complex Systems* *A new home for complex systems research that transcends disciplines* Dr Cherifi, We’re proud to announce *PLOS Complex Systems*, a forthcoming new journal to complement our existing portfolio and continue our mission to support research communities around the globe. *PLOS Complex Systems* <https://click.e.plos.org/?qs=e061474313b570c1405def8d96d43bf81f83b9b03ed88c…> will publish research of broad significance that untangles the complex systems at the heart of the world we live in. Open Science options at every stage of research communication facilitate new connections that inspire ideas and accelerate progress across disciplines while cross-fertilizing knowledge that enable solutions to fundamental challenges facing our society today. Find out more <https://click.e.plos.org/?qs=e061474313b570c1405def8d96d43bf81f83b9b03ed88c…> [image: Hocine Cherifi] *“I am thrilled to be part of the launch of *PLOS Complex Systems*, a significant step forward in understanding the intricacies of our world. This journal has the power to break down disciplinary boundaries and encourage researchers to approach problems holistically. Together, we have the opportunity to shape the future of complex systems research and make a lasting impact on scientific understanding and societal progress.”* *- Hocine Cherifi, Editor-in-Chief* Want to learn more?Find out more about the scope of *PLOS Complex Systems*, our Editor-in-Chief, and other relevant journal information on our website. Start here <https://click.e.plos.org/?qs=e061474313b570c1405def8d96d43bf81f83b9b03ed88c…>

July 4, 2023

Postdoc at NYU

by Grace Lindsay

The Lindsay Lab is hiring a postdoc! Work in the lab focuses on using artificial neural networks as models of the brain. A potential postdoc should be interested in working on a project that could fit into either of the first two research areas listed here: https://lindsay-lab.github.io/research/ (specifically, modeling attention in artificial neural networks or testing tools of neural analysis on artificial neural networks). To apply, send a CV, half page project proposal & contact info for 3 references to grace.lindsay(a)nyu.edu with subject "Postdoc Application" -- Grace Lindsay Assistant Professor, Psychology & Data Science New York University gracewlindsay.com lindsay-lab.github.io *Models of the Mind: How Physics, Engineering and Mathematics Have Shaped Our Understanding of the Brain* <https://gracewlindsay.com/2021/02/10/models-of-the-mind-how-physics-enginee…>

July 3, 2023

PhD candidate on machine learning for normative modeling of functional brain activity -1 fte 4 years

by Mostafa Kia

Dear Colleagues, We are excited to announce an excellent opportunity for an enthusiastic Ph.D. candidate to join our team at the computation psychiatry group at the Department of cognitive science and artificial intelligence, Tilburg University. We are currently seeking a candidate to undertake normative modeling on big MEG/EEG data, a captivating research area with vast potential for precision psychiatry. As a Ph.D. candidate in this role, you will have the chance to apply state-of-the-art machine learning techniques on big MEG/EEG data, contributing to the advancement of our understanding of the biological underpinnings of mental disorders. Your research will focus on responsible normative modeling, allowing for valuable insights and potential applications of machine learning for precision psychiatry. We are looking for a candidate who possesses a strong background in machine learning, probabilistic data modeling, and neuroimaging. Proficiency in data analysis techniques, programming skills, and experience with MEG/EEG data will be advantageous. For more information regarding this vacancy, please consult the original call at https://www.academictransfer.com/en/329751/phd-candidate-on-machine-learnin… . Best regards, Seyed Mostafa Kia <https://research.tilburguniversity.edu/en/persons/seyed-mostafa-kia>, PhD Assistant Professor Department of Cognitive Science & Artificial Intelligence <http://www.csai.nl/> Tilburg School of Humanities and Digital Sciences Warandelaan 2, 5037 AB, Tilburg, The Netherlands

July 3, 2023

PhD position Bioengineering and Robotics: Early vision function in silico networks of LIF neurons | PSPC Labs Genoa, ITALY

by Silvio P. Sabatini

Applications are invited for one full-time PhD studentship for a period of 3 years, at the Department of Informatics, Bioengineering, Robotics, and System Engineering (DIBRIS), University of Genoa, Italy. The position will start on Nov 1st, 2023 on the following research project: **Early vision function in silico networks of LIF neurons** One approach to understanding implications of the initial stages of visual processing is ideal observer analysis, which evaluates the information available to support psychophysical discriminations at various stages of the early visual representation. Computational approaches primarily rely on simple generative models, which do not take into account the distinctive properties of individual elementary channels, as well as the active nature of the input sensory pattern. Accordingly, many details remain underrated, as well as their implications on functional vision not fully understood. The project's goal is to develop an “artificial observer” composed of an active event-based camera feeding a neuromorphic multi-layer network of leaky integrate and fire (LIF) neurons. The system should provide the inference engines for relating visual representations to performance on perceptual judgement tasks. Multiple and varying parameters captured under complex, real-life conditions should be comparatively assessed in silicon and human observers. The research will be conducted at the Bioengineering/PSPC labs of DIBRIS. Applicants are expected to: (1) have a Master’s degree in Bioengineering, Computer Science, Physics or related disciplines, (2) have a keen interest in Vision Science and in Artificial Intelligence, (3) have good programming skills in at least one language (MATLAB, C/C++, Python, C#), (4) work well in group problem solving situations, (5) have intermediate communication skills (oral and written in English). Experience in neural modeling is a plus. Prospective students, please contact Silvio P. Sabatini ( silvio.sabatini(a)unige.it) providing your CV and qualifications, the name and contact details of two references, and a description of your research interests. *Online application is possible till *July 10th , 2023 (12:00 a.m. CET)** Full details on the call and the application procedure are available at: https://unige.it/en/students/phd-programmes https://biorob.phd.unige.it/how-to-apply Regards, -- -- --------------------------------------------------------------------- Silvio P. SABATINI, PhD [PSPC Research Group] DIBRIS - University of Genova | e_mail: silvio.sabatini(a)unige.it Via Opera Pia, 13 | phone: +39 010 33 52092 I-16145 Genova (ITALY) | fax: +39 010 33 56533 URL: http://pspc.unige.it --------------------------------------------------------------------- "Imagination is more important than knowledge..." [Albert Einstein]

July 1, 2023

DPG - Bad Honnef Physics School on "Physics of Viruses" this September

by Viola Priesemann

Dear all, we are organizing a Bad Honnef Physics School on "Physics of Viruses" from September 10th till 15th 2023. - This school will cover all aspects of the physics of viruses, from their molecular architecture and assembly through to virus transmission, spread and evolution. We have put together a diverse program with world-renowned speakers, which also includes tutorials and time for discussions and networking. The physics center in Bad Honnef is a fantastic venue for such events and participation fees are very affordable (200 EUR, 100 EUR for DPG-members, covering board and lodging for one week at the Physikzentrum at Bad Honnef, which is close to Bonn and beautifully located at the Rhine). We very much look forward to interacting with interested master students, PhD-students, postdocs and even more senior researchers! You may also bring a poster on your own work and/or contribute a short presentation. More information and the schedule for the school can be found here : https://www.dpg-physik.de/veranstaltungen/2023/physics_of_viruses?set_langu…. Space is limited, so please secure your spot at the school as soon as possible. We very much look forward to welcoming you in Bad Honnef! Best regards, Ulrich Schwarz and Sarah Köster PS: PIs, please forward this email to your group members! https://www.dpg-physik.de/veranstaltungen/2023/physics_of_viruses?set_langu… ---------------------- Tel. +49 (2224) 9232-0 Fax +49 (2224) 9232-50 E-Mail: dpg(a)dpg-physik.de www.dpg-physik.de www.linkedin.com/company/dpgphysik www.facebook.com/DPGPhysik www.instagram.com/DPGPhysik www.youtube.com/DPGPhysikTV Deutsche Physikalische Gesellschaft e. V. Geschäftsstelle, Hauptstraße 5, 53604 Bad Honnef Hauptgeschäftsführer: Dr. Bernhard Nunner Eingetragen beim Vereinsregister des Amtsgerichts Siegburg unter Registernummer VR 90474

June 28, 2023

NEURON, NetPyne, and TREES at OCNS 2023 in Leipzig

by McDougal, Robert

Join us at CNS 2023 in Leipzig on July 15th for the tutorial T01: Building mechanistic multiscale models with NEURON, NetPyNE, and TREES. NEURON is a simulator for neurons and networks of neurons with strong support for morphologically detailed models. TREES is a toolbox for working with morphologies, and NetPyNE is an abstraction layer on top of NEURON to facilitate the specification of large network models. We will talk about both basic and new features. This tutorial will be highly interactive, focusing on cloud-based examples for the NEURON and NetPyNE portions. Registration for the tutorials at CNS 2023 is required and can be done at: https://ocns.memberclicks.net/cns-2023-registration Speakers include: Bill Lytton, Robert McDougal, Thomas Künzel, Hermann Cuntz, Adam Newton, and Salvador Dura-Bernal. Full details are available at: https://cns2023.sched.com/event/150df23f7af1dcca6e55694eba15bf83 Hope to see you there!

June 27, 2023

Apply now for the Computational Neuroscience Imbizo 2024 - form closes 11th July

by Christopher Currin

Dear all, The DEADLINE for the next IMBIZO is approaching very quickly. Don’t let this opportunity slip by if you are hoping to join the most diverse neuroscience summer school at the most beautiful beach in the world! If you know anyone who would benefit from an extraordinary computational neuroscience summer school, please distribute this information as widely as you can: IBRO-SIMONS COMPUTATIONAL NEUROSCIENCE IMBIZO #Imbizo2024 7 January - 28 January 2024, Noordhoek Beach, Cape Town, South Africa http://imbizo.africa/ Application deadline: 11th July 2023 The #Imbizo2024 is a southern hemisphere summer school aiming to promote computational neuroscience in Africa. It will bring together international and local students under the tutelage of the world's leading experts in the field. Like its international sister courses, this four-week summer school aims to teach central ideas, methods, and practices of modern computational neuroscience through a combination of lectures and hands-on project work. Mornings will be devoted to lectures on topics across the breadth of computational neuroscience, including experimental underpinnings and machine learning analogues. The rest of the day will be spent working on research projects under the close supervision of expert tutors and faculty. Individual research projects will focus on the modelling of neurons, neural systems, behaviour, the analysis of state-of-the-art neural data, and the development of theories to explain experimental observations. It also includes a week focused on neuroscience-inspired machine learning! Who should apply? This course is aimed at Masters and early-PhD level students though Honours or advanced undergraduates may also apply. Postdoctoral students who can motivate why the course would benefit them are also encouraged to apply, Students should have sufficient quantitative skills, (e.g. a background in mathematics, physics, computer science, statistics, engineering or related field). Some knowledge of neural biology will be useful but not essential. Experimental neuroscience students are encouraged to apply, but should ensure that they have a reasonable level of quantitative proficiency (i.e. at least second-year level mathematics or statistics and have done at least one course in computer programming). Essential details * Fee (which covers tuition, lodging, and meals): 1350 EUR Thanks to our generous sponsors, significant financial assistance is available to reduce and waiver fees for students, particularly for African applicants. We also hope to provide some travel bursaries for international students. If you are in need of financial assistance to attend the Imbizo, please state so clearly in the relevant section of your application. The Imbizo is planned to be hosted in person, with everyone following our COVID policy <https://imbizo.africa/covid-policy/>. If it is unsafe to hold the summer school, we will follow up with further information at the appropriate time. * Application deadline: 11th July 2023 * References submitted: 14th July 2023 * Notification of results: August 2023 Information and application https://imbizo.africa/ Questions? isicn.imbizo(a)gmail.com What is an Imbizo? \ɪmˈbiːzɒ\ | Xhosa - Zulu A gathering of the people to share knowledge. Incl. past FACULTY and TAs such as... Adrienne Fairhall - Washington University Alex Pouget - University of Geneva Anne-Marie Oswald - University of Pittsburgh Annik Carson - AI Redefined Arif Hamid - University of Minnesota Medical School Aza Allsop - Yale University Bard Ermentrout - University of Pittsburgh Bianca Jones Marlin - Columbia University Blake Richards - McGill University Brent Doiron - University of Chicago Cengiz Pehlevan - Harvard University Christopher Currin - Institute of Science and Technology Austria & IndabaX South Africa Daniela Vallentin - Max Planck Institute for Biological Intelligence David Sussillo - Google Demba Ba - Harvard University Dongyan Lin - MILA Evan Schaffer - Columbia University Franck Kalume - University of Washington Grace Lindsay - New York University Guillaume Lajoie - University of Montreal & MILA Henning Sprekeler - Technical University of Berlin Ilenna Jones - Harvard University Joseph Raimondo - University of Cape Town Mackenzie Mathis - EPFL Lausanne Marjorie Xie - Columbia University Mohamed Abdelhack - Krembil Centre for Neuroinformatics Nina Kudryashova- University of Edinburgh Peter Latham - University College London Rachael Dangarembizi - University of Cape Town Roy Eyono - MILA Spiros Chavlis - IMBB-FORTH SueYeon Chung - New York University Thomas Tagoe - University of Ghana Tim Vogels - Institute of Science and Technology Austria Timothy Lillicrap - DeepMind Xaq Pitkow - Baylor College of Medicine ORGANISERS Demba Ba (Harvard University) Christopher Currin (Institute of Science and Technology Austria & IndabaX South Africa <https://indabax.co.za>) Peter Latham (Gatsby Unit for Computational Neuroscience) Joseph Raimondo (University of Cape Town) Emma Vaughan (Imbizo Logistics) Tim Vogels (Institute of Science and Technology Austria) Sponsors The Imbizo is made possible by the generous support from the Simons Foundation <https://www.simonsfoundation.org/>, the International Brain Research Organisation (IBRO) <https://ibro.org/> as well as the Wellcome Trust, Google Deep Mind and others. Organizational Affiliates University of Cape Town, University College London, Institute of Science and Technology Austria, TReND in Africa <http://trendinafrica.org/>, Neuroscience Institute <http://www.neuroscience.uct.ac.za/>, Gatsby Foundation <http://www.gatsby.org.uk/>, IBRO African Center for Advanced Training in Neurosciences at UCT

June 27, 2023

Open research training: Open Seeds mentoring & training program is open for application until July 2023

by Mayya Sundukova

Dear all, The next cohort of Open Seeds OLS-8 is open for application! Open Seeds is a Mentoring & Training Programme run by OLS, designed for people interested in applying open principles in their work and becoming Open Science ambassadors in their communities. The program is free but requires registration in OpenReview and an application with a project where you would like to apply open skills. More information: https://openlifesci.org/ The deadline to apply is on July 7th, with a decision made in August and the cohort starting in mid-September 2023. On the 28th of June OLS will run an open webinar “Application Clinic (Q&A)” where interested participants can ask the OLS team any questions about their applications to the program. If you have not thought about a project and application, this can be an excellent opportunity to learn more about the program and get inspired https://www.eventbrite.co.uk/e/application-clinic-call-qa-tickets-660976427… . Help us share about the Open Seeds OLS-8 call in your network. More about Open Seeds Purpose: Training for individuals and teams interested in furthering their Open Science skills in any area of research and community projects. Process: Online 16-week with online cohort calls and mentor-based individual support to help participants in integrating open science practices in their work and in the long term become Open Science ambassadors in their community. Open leaders from Open Seeds OLS programme are - taught essential knowledge required to create, lead, and sustain an Open Science project. - connected with members across different communities, backgrounds, and identities by creating space in this program for them to share their experiences and expertise. - empowered to become effective Open Science ambassadors in their communities. *Examples of projects you can bring:* Please see our previous cohorts for a full list of projects that have been developed in OLS: OLS1 <https://openlifesci.org/ols-1/projects-participants/>, OLS-2 <https://openlifesci.org/ols-2/projects-participants/>, OLS-3 <https://openlifesci.org/ols-3/projects-participants/>, OLS-4 <https://openlifesci.org/ols-4/projects-participants/>, OLS-5 <https://openlifesci.org/ols-5/projects-participants/>, OLS-6 <https://openlifesci.org/ols-6/projects-participants/> and OLS-7 <https://openlifesci.org/ols-7/projects-participants/> - Researchers and data scientists: applying open, reproducible and FAIR principles to their current research, data management plan, collaborative workflow design, tooling and roadmapping, the publication of research outcome, a side project they are working on, an app they are building for social good, a prototype they want to further enhance etc. - Business team members: collaborative projects with the researcher, public engagement, dissemination of research output, community engagement, survey and feedback collection, infrastructure design, resource hosting services etc. - Support staff members: data management, reproducible workflow, FAIRification of research components (training, data, web source etc.), support documents for their colleagues, participatory & citizen science - Community/project managers: community-building skills, community development project, collaborative research, training and education opportunity etc. To learn more about the program and process of application, you can check the recording of the application launch call from the previous cohorts on the OLS YouTube channel: https://youtu.be/shM2mVyLjxU For additional details, feel free to reach out to the Open Life Science team at: team(a)openlifesci.org. We are also on social media: - Twitter: https://twitter.com/openlifesci - Linkedin: https://www.linkedin.com/company/openlifesci/ - Youtube channel with open educational resources: https://www.youtube.com/@OpenLifeSci <https://www.youtube.com/@OpenLifeSc>. We look forward to welcoming you in the next cohort. Best wishes, OLS Team

June 26, 2023

Call for community review: 2 new neuroscience SBPs

by INCF

Two calls for community review: 1. Digital SWC Reconstructions Describing Neuron Morphology (SWC) 2. SPARC Data Structure Feedback from the community is an important part of our review process; it helps us ensure that the standard has community support and is useful and practical to the community. By commenting, you contribute to improving the standard for current and future users! 1. Digital SWC Reconstructions Describing Neuron Morphology (SWC) SWC files (file extension of .swc) are text-based (ASCII text) files that describe three-dimensional neuronal or glial morphology. These digital reconstructions represent morphology as a vectorized tree structure, made of a series of connected nodes. An SWC file contains a series of text-based rows where each neuron node is described by a single row of only seven space-separated values. The format is simple and intuitive; a parser of or writer to the format could be implemented by anyone with knowledge of any programming language. With an open archive and freely available structure editor, the SWC system facilitates community-wide pooling of data for building biophysically realistic neuronal models and studying the morphological variation between neurons, contributing to a greater neuroscientific cooperation and openness. Review by Aug 15 Learn more: incf.org/commentaries/swc <https://www.incf.org/commentaries/swc> 2. SPARC Data Structure Financially backed by the NIH Common Fund, SPARC is a large-scale project which aims to deepen our knowledge of nerve-organ interactions. With an initial focus on bioelectronic medicine, the SPARC consortium created the SPARC data structure (SDS), a file and metadata organizational scheme inspired by the Brain Imaging Data Structure (BIDS). This data structure has proven capable of handling complex datasets from multiple and heterogeneous species, measurement techniques, and spatial scales. One of the primary purposes of SDS is to increase the integrity of scientific research by promoting FAIR and open science practices, particularly by facilitating the generation of well-annotated, organized, standardized, and shared biomedical datasets. Review by Aug 15 Learn more: incf.org/commentaries/sparc <https://www.incf.org/commentaries/sparc> Thanks for your help! /The INCF Team

June 26, 2023

Computational Neuroscience Postdoc position in New York

by Salvador Dura-Bernal

A Postdoc position is now available in the Dura-Bernal Lab<http://dura-bernal.org/> at the State University of New York (SUNY) Downstate Health Sciences University (Brooklyn, New York), working on a new exciting multidisciplinary project entitled "Restoring motor function after spinal cord injury using multiscale modeling to decode neural latent dynamics from motor cortex EEG." The position is funded by New York State (NYS) Department of Health (DOH) Spinal Cord Injury Research program. The project aims to improve brain-machine interface decoders by combining multiscale modeling of motor cortex circuits, analysis of low-dimensional neural manifolds associated with behavior, and realistic simulation of EEG signals. See our recent Cell Reports publication describing the multiscale motor cortex model and behavior-related neural manifolds: www.cell.com/cell-reports/fulltext/S2211-1247(23)00585-5<http://dura-bernal.org/www.cell.com/cell-reports/fulltext/S2211-1247(23)005…> For more details and how to apply visit: http://dura-bernal.org/postdoc-2023<https://t.co/aGDh79EjyE> (Please share!) ________________________________ The contents of this email message and any attachments are confidential and are intended solely for the addressee. The information may also be legally privileged. This transmission is sent in trust, for the sole purpose of delivery to the intended recipient. If you have received this transmission in error, any use, reproduction or dissemination of this transmission is strictly prohibited. If you are not the intended recipient, please immediately notify sender by reply email or by (718) 270-HELP.

June 25, 2023

Registration for the Bernstein Conference 2023 in Berlin is open now

by Alexander Lammers

***Registration for the Bernstein Conference 2023 in Berlin is open now*** ___ The Bernstein Conference Each year the Bernstein Network invites the international computational neuroscience community to the annual Bernstein Conference for intensive scientific exchange. It has established itself as one of the most renowned conferences worldwide in this field, attracting students, postdocs, and PIs from around the world to meet and discuss new scientific discoveries. www.bernstein-conference.de<http://www.bernstein-conference.de> ___ Important Dates * Bernstein Conference: September 26 - 29, 2023 * Abstract submission for posters: July 19, 2023, 15:00 CEST * Travel grant applications: July 19, 2023 * Early registration: July 19, 2023 ___ Registration Registration for the Bernstein Conference is open now. Register until July 19, 2023, and profit from reduced conference fees. All information: https://bernstein-network.de/bernstein-conference/registration/ ___ Abstract Submission We invite the computational neuroscience community to submit their abstracts. The abstract submission for posters is open until July 19, 2023, 15:00 CEST. All accepted abstracts will be published online and will be citable via Digital Object Identifiers (DOI). Abstract submission: https://bernstein-network.de/bernstein-conference/abstract-submission/ ___ Travel Grants Students, PhD candidates, and postdocs can apply for travel grants. Travel grant application: https://bernstein-network.de/bernstein-conference/early-career-scientists/t… ___ Invited Speaker Keynote Marlene Cohen (University of Chicago, USA) Invited Talks Tiago Branco (Sainsbury Wellcome Center, UK) Stefano Fusi (Columbia University, USA) Ann Kennedy (Northwestern University, USA) Julija Krupic (University of Cambridge, UK) Wiktor Mlynarski (LMU Munich, Germany / Institute of Science and Technology, Austria) Adrien Peyrache (McGill University, Canada) Kanaka Rajan (Icahn School of Medicine at Mount Sinai, USA) Christopher Summerfield (University of Oxford and Deepmind, UK) Julia Veit (Albert-Ludwigs-Univesität Freiburg, Germany) ___ Conference Committee Robert Gütig (Conference Chair) Tatjana Tchumatchenko (Program Chair) Srdjan Ostojic (Program Vice Chair) Anna Levina (Workshop Chair) Maria Eckstein (Workshop Vice Chair) & Athena Akrami, Ann Hermundstad, Mehrdad Jazayeri, Christian Leibold, Ashok Litwin-Kumar, Ida Momennejad, Nicole Rust, Andrew Saxe, Daniela Vallentin, Friedemann Zenke. ___ Contact For any further questions, please contact: bernstein.conference(a)fz-juelich.de<mailto:bernstein.conference@fz-juelich.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Stefan Müller Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Dr. Ir. Pieter Jansens, Prof. Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

June 23, 2023

1 PhD position on: New methods for realistic and comfortable experiences in AR

by Agostino Gibaldi

We are inviting applications for one fully funded PhD position (3 years) in the Department of Informatics, Bioengineering, Robotics, and Systems Engineering <https://dibris.unige.it/en>, at the University of Genoa (IT), in collaboration with Magic Leap <https://www.magicleap.com/en-us/>. The research theme focuses on realistic and comfortable experiences in Augmented Reality (more info in the attached call for position). Interested applicants are welcome to reach out for more information about the theme and the position. The official call can be found here: https://unige.it/dottorati-di-ricerca You can apply from June 09 at 03.00 pm (italian time) to July 10 at 12.00 noon (italian time) at this page: https://unige.it/en/students/phd-programmes Best, Agostino Gibaldi, PhD Human Vision Scientist Magic Leap *New methods for realistic and comfortable* *experiences in AR – University of Genoa* *Curriculum: *Industry 4.0 *Hosting Institution: *University of Genoa *Department: *Department of Informatics, Bioengineering, Robotics, and Systems Engineering (DIBRIS) *Tutors:* Silvio P. Sabatini, Andrea Canessa, Gerrit Maus, Agostino Gibaldi *Description:* Optical see-through (OST) augmented reality head-mounted displays (HMD) have emerged as a key asset in several application fields. In OST HMDs the direct view of the world is mostly preserved and there is no perspective conversion in viewpoint and field of view, as with video see-through (VST) systems. This aspect confers a clear advantage over VST solutions, particularly when used to interact with close objects. Although there have been significant improvements to performance and comfort of OST HMDs, limitations associated with human perception still remain to be addressed. In order to provide the user with a realistic, natural and comfortable visual experience, a thorough and accurate knowledge of eye characteristics and HMD geometry must be assumed. These quantities are usually calibrated on a per-device and per-user basis, or modeled from scientific literature. A deviation of the actual values from the expected ones can result in incorrect camera placement, spatial distortions and non-uniformities, thus triggering discomfort in VR/AR. The goal of this research project is to develop methods and techniques to assess and mitigate discomfort and perceptual inconsistencies between real and augmented visual content in OST HMDs. A joint experimental and modeling approach will be followed in order to: 1. investigate methods to evaluate different sources of discomfort/mismatch; 2. develop subjective and objective methods to quantify the originated discomfort; 3. investigate strategies to mitigate the sources of discomfort/mismatch in AR/VR devices. *Requirements:* Applicants are expected to: 1) have a keen interest in Vision Science and in Augmented Reality, 2) have good programming skills in at least one language (Matlab, C/C++, Python, C#), 3) work well in group problem solving situations, 4) have intermediate communication skills (oral and written) in English or better. Experience in Unity 3D is a plus. *References:* [1] Konrad, R., Angelopoulos, A., & Wetzstein, G. (2020). Gaze-contingent ocular parallax rendering for virtual reality. ACM Transactions on Graphics (TOG), 39(2), 1-12 [2] Lambooij, M. T., IJsselsteijn, W. A., & Heynderickx, I. (2007). Visual discomfort in stereoscopic displays: a review. Stereoscopic Displays and Virtual Reality Systems XIV, 6490, 183-195. [3] Gibaldi A., Liu Y., Kaspiris-Rousellis C., Mahadevan M., Vlaskamp B.NS, Maus G.W. Vertical vergence and screen alignment with see-through head-mounted displays. ECVP 2023. *Company name and link (for industrial projects):* Magic Leap Inc. (www.magicleap.com) *Number of positions available: 1* *Main Research Sites* *1.* DIBRIS, via Opera Pia 13, 16145 Genoa, Italy, *2.* Macic Leap Inc., Andreasstrasse 5, 8050 Zürich, Switzerland *Contacts:* Email: silvio.sabatini(a)unige.it, gmaus(a)magicleap.com *Funding Scheme:* This doctorate grant is co-funded by PNRR program DM-117

June 22, 2023

Endowed Professorship "Machine Learning for Clinical Neuroscience"

by Philipp Berens

Dear all, we are currently advertising an Endowed professorship "Machine Learning for Clinical Neuroscience" (https://www.academics.com/jobs/w3-stiftungsprofessur-fuer-maschinelles-lern…) at the University of Tübingen. We are looking for candidates that perform innovative research on the application and development of new machine learning methods in clinical neuroscience, in particular for early detection and prediction of disease progression. This can include work on topics such as explainability, safety and robustness of machine learning methods in clinical settings. It would be great if candidates had worked with multimodal data with clinical relevance (e. g. MRI, fMRI, EEG, electrophysiology, omics data, data from sensors of wearables) as well as cohort data (UKBiobank, NAKO, etc.). Tübingen offers a first-rate environment at the intersection of neuroscience and AI/ML research with the Excellence Cluster for Machine Learning in Science, the Tübingen AI Center, the Max Planck Institutes for Intelligent Systems and Biological Cybernetics, the Hertie Institute for Clinical Brain Research and many other institutions! We are looking forward to your application by July 20th. Best Philipp -- Professor of Data Science, Director Hertie Institute for AI in Brain Health Medical Faculty of the University of Tübingen www.berenslab.org

June 22, 2023

[job post] Open PhD positions on neuromorphic perception and control for soft robots

by Chiara Bartolozzi

We are looking for three PhD fellows interested in developing neuromorphic systems for robots. They will team up to look at the different aspects involved in developing neuromorphic circuits and computation for sensing, perception, and actuation for soft biomimetic robots. We will aim at coupling soft materials, sensory transduction, neuromorphic circuits and computation, and soft actuation, towards the design of robots that can seamlessly and gently interact with their environment. Each PhD will have their own multi-disciplinary research goals and will be co-supervised by leading scientists in the complementary disciplines: Neuromorphic distributed intelligence for soft robots – Computation with spiking neural networks for haptic perception and closed loop control of soft robots – Supervisors: C. Bartolozzi<https://edpr.iit.it/> & B. Mazzolai<https://bsr.iit.it/> Neuromorphic distributed intelligence for soft robots – Design of neuromorphic circuits on flexible substrates for sensing and computation – Supervisors: C. Bartolozzi<https://edpr.iit.it/> & L. Beccai<https://sbrp.iit.it/> Online neuromorphic perception and actuation for robots – Italian Institute of Technology – Supervisors: C. Bartolozzi<https://edpr.iit.it/>, S. Soldado-Magraner<https://bri.ucla.edu/people/saray-soldado-magraner/> & E. Donati<https://services.ini.uzh.ch/people/elisa> Location: Italian Institute of Technology, via San Quirico 19D, Genova, Italy https://iit.it Enrolment: DRIM PhD School @ University of Genova https://drim.i-rim.it/en/ Official call (with guidelines for applications): https://unige.it/en/students/phd-programmes PhD themes description: https://drim.i-rim.it/wp-content/uploads/2023/05/Research-Themes-Hostile-an… - checkout Themes 3,4<https://drim.i-rim.it/wp-content/uploads/2023/05/Research-Themes-Hostile-an…>,5 Deadline for application: June 30th

June 22, 2023

CFP - IROS 2023 Workshop on World Models and Predictive Coding in Cognitive Robotics

by nagai.yukie＠mail.u-tokyo.ac.jp

Dear colleagues, **************************** Call for Posters and Participation Workshop on World Models and Predictive Coding in Cognitive Robotics 2023 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2023) **************************** We are inviting contributions to our IROS 2023 workshop. We would like to invite workshop attendees to submit an extended abstract explaining their current work related to world models and predictive coding in cognitive robotics. [ Website ] https://world-model.emergent-symbol.systems/ Contact email: taniguchi(a)em.ci.ritsumei.ac.jp (Tadahiro Taniguchi, Ritsumeikan University) [ Important Dates ] Paper submission deadline: 5th August 2023 Notification of acceptance: 19th August 2023 Camera-ready submission: 10th September 2023 Workshop day: 5th October 2023 [ Call for Contributions ] We encourage researchers to submit 1-2 page extended abstracts or a preprint of relevant work. There is no page limitation for the preprint. Accepted abstracts will be posted on the workshop website and will not appear in the official IEEE proceedings. The reviewing process is single-blind and will be carried out by the workshop organizers. Please submit your extended abstract via the Google form: https://forms.gle/Sw7UtX1ihtq4vpgA9 (The URL is also provided on the website) Accepted papers will have the opportunity to present their work/ideas in a poster session. Additionally, a few select submissions will have the chance to give a short talk, while others will give a flash talk. [ Special Issue ] Furthermore, a selected number of papers from the poster sessions will be invited to submit their novel work to the Special Issue proposed in the journal "Advanced Robotics.” [ Awards ] The Best Cognitive Robotics Paper Award, supported by the Technical Committee of Cognitive Robotics, will be awarded to the best paper. The recipient of the award will receive a prize of $300. [ Objectives ] This workshop will explore new frontiers in robotics, focusing on world models, predictive coding, probabilistic generative models, and the free energy principle. The ultimate goal of cognitive and developmental robotics is to create autonomous robots capable of actively exploring their environment, acquiring knowledge, and continuously learning skills. Crucially, to develop robots that learn through interactions with their environment, their learning processes should emulate human cognitive development and learning, which are based on engagement with the physical and social world. This workshop specifically focuses on world models and predictive coding in cognitive robotics. World models have recently garnered significant interest in artificial intelligence, as cognitive systems utilize these models to improve future sensory predictions and optimize their policies or controllers. In neuroscience, predictive coding posits that the brain constantly anticipates its inputs and adjusts its models to manage dynamics and control behavior in its environment. Both concepts may underlie the cognitive development of robots and humans capable of continuous or lifelong learning. The workshop aims to provide a platform for researchers and practitioners in cognitive robotics to exchange ideas and explore new avenues for the development of autonomous cognitive and developmental robots. This enriching experience will contribute to the growth and advancement of the field of cognitive robotics. [ Invited Speakers ] (planned) Tetsuya Ogata (Waseda University, Japan) Pablo Lanillos (Donders Institute for Brain, Cognition, and Behaviour, Netherlands) Giulio Sandini (Italian Institute of Technology, Italy) Takamitsu Matsubara (NAIST, Japan) Beren Millidge (Conjecture, UK) Danijar Hafner (UC Berkeley, United States) [ Organizers ] Tadahiro Taniguchi, Ritsumeikan University Emre Ugur, Bogazici University Masahiro Suzuki, The University of Tokyo Dimitri Ognibene, Università degli Studi di Milano-Bicocca Lorenzo Jamone, Queen Mary University of London Yukie Nagai, The University of Tokyo Tatsuya Matsushima, The University of Tokyo Tetsunari Inamura, Tamagawa University Best regards, Yukie, on behalf of the organizers — Yukie Nagai, Ph.D. Project Professor, The University of Tokyo nagai.yukie(a)mail.u-tokyo.ac.jp | https://developmental-robotics.jp CREST Cognitive Feelings: https://cognitive-feeling.jp CREST Cognitive Mirroring: https://cognitive-mirroring.org

June 21, 2023

Spanish Return of Talent Programme

by Serafim Rodrigues

Dear All, Please find below a brief summary of the *“Return of Talent Programme”* launched by the FUNDACIÓN RAMÓN ARECES. The deadline for submission of applications is* 15th October 2023.* v *OVERVIEW OF THE CALL* The aim of this call is to promote an innovative programme for the return of scientists already established abroad, so that they can develop a *relevant* *research project (in any scientific area) for a period of five years in a Spanish public research institution*. v *FUNDING CONDITIONS & DURATION* *DURATION:* *5 years* (the initial duration is 1 year, extendable annually for 4 successive additional years after a favorable evaluation by the Foundation's Scientific Council). *Note:** It must start, at the latest, 12 months after the Call results are published.* *FUNDING:* *1 grant** for the amount of 1.250.000 €* - *1st year:* 40 %. - *2nd and 3rd year:* 20% each year. - *4th and 5th year:* 10% each year. v *ELIGIBILITY & REQUIREMENTS* - *Applicant researchers:* ü *Spanish nationality*. ü *Have been residing and working on scientific projects outside Spain for a period of no less than 5 years* at the time of application. *Note:** time spent abroad (“estancias puntuales en el extranjero”) will not be considered as a period of residence, nor will the provision of services as a volunteer or any other form that does not involve financial remuneration.* ü *To have led or lead a scientific project as PI*. ü *Have a proposal from a Spanish public hospital or research center to carry out a research project.* ü Submit, together with the host institution, a significant research project, with its corresponding objectives, chronology and assessment indicators. ü Submit a declaration of intention to continue the professional activity in Spain at the end of the Programme (provided that the minimum conditions for this are met), in a joint declaration with the host institution. - *Host institutions:* ü *Spanish public hospitals or research centres. IMPORTANT NOTE: Please check the eligibility of your institution before applying.* ü Submit, together with the candidate, a five-year research project at the Spanish center with defined objectives, an established chronology and clear indicators for assessing its progress. ü Specify the contributions that the receiving center will make to support the candidate's project (human and material resources). ü To identify which facilities and laboratory will be specifically dedicated to the Programme (with the name). v *FURTHER INFORMATION* - Results to be published *before the end of 2023*. - Please access the following link for further information on the call: https://www.fundacionareces.es/fundacionareces/es/programa-de-retonorno-del… - Applications must be sent online: https://www.fundacionareces.es/areaprivada/areaprivada/index.html#/login If you are interested, please get in touch with us as we are seeking talent in the area of Mathematical, Computational and Experimental Neuroscience. Sincerely Serafim -- Serafim Rodrigues Ikerbasque Research Professor Mathematical, Computational and Experimental Neuroscience (MCEN) Group Leader *BCAM - *Basque Center for Applied Mathematics Alameda de Mazarredo, 14 E-48009 Bilbao, Basque Country - Spain Tel. +34 946 567 842 srodrigues(a)bcamath.org | www.bcamath.org/srodrigues | www.ikerbasque.net/serafim-rodrigues Old Mathematicians never die They just "tend to infinity" -Anonymous *(**matematika mugaz bestalde)*

June 21, 2023

Postdoctoral position Lyon

by DI VOLO MATTEO

A post-doctoral position is open in computational neurosciences at the Neurobiology of Executive Function lab at the Stem Brain Research Institute in Lyon (https://www.sbri.fr/).The research project aims to understand the neural mechanisms of learning during decision making. The project includes the development of a biophysical model of neuronal networks and neural mass models [1] for decision making and adaptive behaviour. The model will be developed in synergy with data analyses of monkeys electrophysiology data during task performances [2]. The successful candidate will be part of a team with experts in computational/theoretical neurosciences and will benefit from the availability of state of the art recordings at SBRI [2] and, more in general, of the rich neuroscience environment in Lyon. We welcome applicants with diverse scientific backgrounds, including, neuroscience, mathematics, physics, and engineering. We are especially interested in applicants with good programming skills (e.g. Python, C++). If interested, please take contact with Matteo di Volo: matteo.divolo(a)univ.lyon1.fr<mailto:matteo.divolo@univ.lyon1.fr> -- Matteo di Volo Junior Professor Lyon 1 University Stem and Brain Research Institute INSERM https://sbri.fr/public-profile/124/single-member/

June 21, 2023

New PhD position at Charité Berlin

by Roshan Rane

Dear Comp-neuro group, we offer a PhD / PostDoc position (4 years, 100%) at Charité - Universitätsmedizin (Berlin, Germany) in “Machine / Deep Learning in Neuroimaging for Psychiatric Research” in the framework of the TRR 265 "Losing and regaining control over drug intake". Please see the job advertisement below and forward to potential candidates. The advertisement is posted at: https://www.linkedin.com/jobs/view/3625491271/ ____________________________________________________ Job opening: PhD / PostDoc Position (100%, 4 years) “Machine / Deep Learning in Neuroimaging for Psychiatric Research” We are seeking a highly motivated and talented individual to join our research team as a PhD student / Postdoc who would apply machine learning to substance addiction research. The successful candidate will have the opportunity to develop innovative and explainable machine/deep learning algorithms that can identify patterns and predictors of alcohol addiction and cannabis use disorder using structural brain MRI, Ecological Momentary Assessments (EMA), and psychometric questionnaires. A key aspect of this research will be accounting for confounding variables, such as age or comorbidities, to ensure robust and reliable results. This project is part of the TRR265 research consortium (https://www.trr265.org/en) The position will be in the lab of Prof. Dr. rer. nat. Kerstin Ritter (https://psychiatrie-psychotherapie.charite.de/en/research/translation_and_n…) Salary grade: TV-L E13 (100%) Starting date: August 01, 2023, for ~ 4 years Soft application deadline: June 25th, 2023 The position would remain open until filled. Qualifications: - Master’s degree with excellent grades in Computer Science, Data Science, Statistics, Physics, Computational Neuroscience or a related field - Experience with data analysis, visualization, and developing machine learning algorithms - Strong programming skills in Python and PyTorch, and experience working with linux servers and GitHub - Some prior experience with publishing research papers and working independently on open research questions - Excellent written and oral communication skills Ideal additional qualifications: - Familiarity with developing explainable deep learning algorithms and benchmarking model performance - Prior experience with psychiatric research - Prior experience with neuroimaging - Familiarity with analyzing healthcare data such as ecological momentary assessments and psychometric questionnaires -Prior experience with publishing open-source research code To apply, please submit: CV with contact information of 2-3 references Short motivation letter (max 1 page) mentioning the skills you can bring to this project Master’s / PhD degree transcript (if available) Please send your application asap to Roshan Rane (roshan.rane(a)bccn-berlin.de <mailto:roshan.rane@charite.de>) and Kerstin Ritter (kerstin.ritter(a)charite.de <mailto:kerstin.ritter@charite.de>). _____________________________________________ Looking forward to your applications! ---- With warm regards, Roshan Rane

June 21, 2023

Call for abstracts: Brain Informatics 2023 in Hoboken New Jersey

by Feng Liu

+++++++++++++++++++++++++++++++++++++++++++++++++++++++++ CALL FOR Abstracts The 16th International Conference on Brain Informatics (BI'23) August 1 - 3, 2023 Hoboken & New York – USA The key theme: Brain Science meets Artificial Intelligence Conference homepage: wi-consortium.org/conferences/bi2023/ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ *** IMPORTANT DATES *** - 30 Jun 2023: Abstract/workshop proposal Submission Deadline *** Confirmed Keynote Speakers *** - Professor Emery N. Brown Member of the National Academy of Sciences Member of the National Academy of Engineering Member of the National Academy of Medicine MIT, Massachusetts General Hospital, USA - Professor Bin He Fellow of International Academy of Medical and Biological Engineering (IAMBE) Fellow of American Institute of Medical and Biological Engineering (AIMBE) Fellow of Biomedical Engineering Society (BMES), and IEEE Member of the National Academy of Inventors Carnegie Mellon University, USA - Professor John Ngai Director of NIH BRAIN Initiative NIH BRAIN Initiative, USA - Professor Helen Mayberg Member of the National Academy of Sciences Member of the National Academy of Medicine Member of the National Academy of Inventors Member of the American Academy of Arts and Sciences Mount Sinai Medical Center, USA - Professor Vinod Goel Author of monographs: “Sketches of thought” and “Reason and Less: Pursuing Food, Sex, and Politics” York University, Canada - Professor Amy Kuceyeski Director of Computational Connectomics (CoCo) at Weill Cornell Medicine Cornell University, USA - Dr. Grace Hwang Program Director, NINDS, NIH *** Local information *** *The location of the BI2023 in the beautiful campus of Stevens Institute of Technology in Hoboken, New Jersey, located on the west bank of Hudson River overlooking Manhattan. Stevens is close to a group of finest universities such as Princeton University (1.5 hours drive), Columbia University (25 min drive), New York University (20 min drive) and Yale University (1h 40 min drive). *Convenient transportation: (1) Nearby there are three major airports: Newark, JFK, and LaGuardia with direct flights to all major cities in the world. (2) 15 minutes to Time Square by bus. *An economic accommodation option: $100 dorm room option is available in the newly completed University Complex Center Building with a view of Manhattan (limited spaces) ***About the conference*** The International Conference on Brain Informatics (BI) series has established itself as the world's premier research conference on Brain Informatics, which is an emerging interdisciplinary and multidisciplinary research field that combines the efforts of Cognitive Science, Neuroscience, Machine Learning, Data Science, Artificial Intelligence (AI), and Information and Communication Technology (ICT) to explore the main problems that lie in the interplay between human brain studies and informatics research. The 16th International Conference on Brain Informatics (BI'23) provides a premier international forum to bring together researchers and practitioners from diverse fields for presentation of original research results, as well as exchange and dissemination of innovative and practical development experiences on Brain Informatics research, brain-inspired technologies and brain/mental health applications. *** Topics and Areas *** The key theme of the conference is "Brain Science meets Artificial Intelligence". The BI'23 solicits high-quality original research and application papers (full paper and abstract presentation submissions). Relevant topics include but are not limited to: Track 1: Cognitive and Computational Foundations of Brain Science Track 2: Human Information Processing Systems Track 3: Brain Big Data Analytics, Curation and Management Track 4: Informatics Paradigms for Brain and Mental Health Research Track 5: Brain-Machine Intelligence and Brain-Inspired Computing Abstract Presentation Submission: Submission link: http://wi-consortium.org/conferences/bi2023/paper%20submissions%20and%20pub… Research abstracts are encouraged and will be accepted for presentations in an oral presentation format and/or poster presentation format. Each abstract submission should include the title of the paper and an abstract body within 1500 words. Note: The abstract will not be included in the conference proceedings to be published by Springer. Special Issues & Books: Workshop organizers can be invited to contribute a book publication in the Springer-Nature Brain Informatics & Health Book Series ( https://www.springer.com/series/15148) or a special issue at the Brain Informatics Journal. *** Workshop & Special Sessions *** Proposal Submissions: BI'23 will be hosting a series of workshops and special sessions featuring topics relevant to the brain informatics community on the latest research and industry applications. Papers & Presentations: A workshop/special session typically takes a half day (or full day) and includes a mix of regular and invited presentations including regular papers, abstracts, invited papers as well as invited presentations. The paper and abstract submissions to workshops/special sessions will follow the same format as the BI conference papers and abstracts. Proposal Guidelines: Each proposal should include: 1) workshop/special session title; 2) length of the workshop (half/full day); 3) names, main contact, and a short bio of the workshop organizers; 4) brief description of the workshop scope and timeline; 5) prior history of the workshop (if any); 6) potential program committee members and invited speakers; 7) any other relevant information.

June 20, 2023