- Comp-neuro - lists.cnsorg.org

GCNU-SWC Joint PhD Programme 2025: Applications now open

by Lin, I-Chun

*** Gatsby Unit and Sainsbury Wellcome Centre Joint PhD Programme *** Deadline: 11 November 2024 The Gatsby Computational Neuroscience Unit (GCNU) and Sainsbury Wellcome Centre for Neural Circuits and Behaviour (SWC) are launching a 4-year joint PhD programme that aims to bridge the gap between theory and experiments. The two centres provide a unique opportunity for a critical mass of theoreticians and experimentalists to interact closely with one another and with researchers at the Centre for Computational Statistics and Machine Learning (CSML) and related UCL departments/domains such as UCL Neuroscience Domain; Artificial Intelligence; the ELLIS Unit at UCL; Computer Science; Statistical Science; and the nearby Francis Crick and Alan Turing Institutes. The joint programme will provide a rigorous preparation for an interdisciplinary research career. The programme blends aspects of the two existing PhD programmes and is designed to immerse students in both experimental and theoretical thinking. Courses in the first year provide a comprehensive introduction to systems neuroscience, theoretical/computational neuroscience, and machine learning. Students will be part of the broader trainee cohort across both centres, interacting and engaging in scientific discussion with both SWC and GCNU researchers with equal emphasis. Applicants should have a strong analytical and mathematical background, a keen interest in neuroscience, and a relevant first degree (e.g., in Computer Science, Cognitive Psychology, Engineering, Mathematics, Neuroscience, Physics, Statistics). Full funding is available regardless of nationality. We also welcome applicants who have secured or are seeking funding from other sources. Applications should be submitted directly to us via the online portal. For programme details (including the key differences between the Gatsby Unit PhD programme, the SWC PhD programme, and the joint programme) and how to apply, see www.ucl.ac.uk/gatsby/study-and-work/gcnu-swc-joint-phd-programme. -- I-Chun Lin, PhD Scientific Programme Manager Gatsby Computational Neuroscience Unit, UCL

Sept. 26, 2024

Leveraging Simulation Neuroscience using Blue Brain's Open Platform at SFN

by Lida Kanari

Dear colleagues,We are thrilled to announce that Blue Brain will be featured at the upcoming SfN 2024 meeting in Chicago. For the first time, we will be offering access to the Blue Brain Open Platform - a comprehensive suite of simulation neuroscience tools designed to enhance your research.As the Blue Brain Project concludes at the end of this year - marking nearly two decades of pioneering work to establish simulation neuroscience as a vital complement to experimental and theoretical approaches - we are proud to release the entire collection of tools, data, and algorithms developed throughout the project.Compiled across nearly 300 publications and 1 petabyte of data, these resources include 260+ public repositories, over 5,000 reconstructed morphologies, more than 100k electrophysiological recordings and 500 e-model, as well as more than 5 detailed models of brain regions, with hundreds of in-vitro simulation experiments - integrated into a single, user-friendly platform for the neuroscience community.We invite you to join our 1-hour workshops at SfN to explore the capabilities of the Blue Brain Open Platform: * Delve into detailed mouse brain data, including experimental and model datasets * Leverage existing models or create custom ones tailored to your research * Design and execute simulation experiments in your own Virtual Lab Sign up for the workshop here: https://forms.gle/jKCAxPzbkCP3P7MT6Our team will also be present at the Blue Brain Project Booth #1852, where we will showcase our range of tools and share our latest findings through over a dozen posters.Please feel free to share this invitation with colleagues or anyone interested in exploring the Blue Brain Open Platform as a new tool for simulation neuroscience.We look forward to collaborating with you on the platform! Best regards, Lida Kanari, PhD Group Leader Neuromathematics Blue Brain Project / EPFL Campus Biotech Chemin des Mines 9, CH-1202 Geneva +41 21 693 9656

Sept. 26, 2024

Postdoctoral fellowship positions in functional neurosurgery, University Health Network, Toronto, Canada

by srisaikaew.p＠gmail.com

Dear colleague, The Hodaie lab, led by Dr. Mojgan Hodaie at the Krembil Brain Institute, Toronto Western Hospital, University Health Network, Toronto, Canada, is currently hiring new postdocs. Job description: Job type, Status: Temporary full-time Job function: Research Job duration: 12 months, renewable Required Travel: None Min Education: PhD Min Experience: 1-2 years Salary: Set by Krembil Research Institute, UHN Workplace type: On-Site, Toronto, Ontario, Canada Project / position summary: Magnetic Resonance Imaging (MRI) is an important tool for the non-invasive pre-surgical assessment of peripheral nerve sheath tumors. While conventional MRI sequences provide limited contrast to distinguish between tumor types or between nerve and tumor tissue, diffusion MRI techniques offer the potential for improved pre-surgical assessment. This project is focused on the application of state-of-the-art processing pipelines for diffusion MRI and tractography to provide additional means for neurosurgeons to assess nerve-tumor relationships prior to surgery. In particular, this includes the implementation of diffusion MRI tractography methods tailored to peripheral nerves, high-quality 3D visualizations for presentation and documentation purposes, as well as the implementation of new customized algorithms to cover new analysis objectives. Key responsibilities: - Keeping track of diffusion MRI-based imaging sessions related to peripheral nerve sheath tumors including timely download, image processing, and presentation of results - Selection of appropriate diffusion MRI sequence parameters - Implementation and application of state-of-the-art diffusion MRI and tractography processing pipelines adopted for peripheral nerves - Collaboration with neurosurgeons to define timelines, to identify and understand analysis objectives, and to discuss analysis results interactively - Lead efforts to define, execute and publish research projects in the context of this project This position will allow you to: - Work in a world-class clinical research environment - Present findings at national/international conferences - Publish in excellent journals - Actively engage and network with the large Toronto neuroscience community with one of the highest densities of neuroscientists in North America Job requirements: This position requires the following skills: - A Ph.D. in neuroimaging in neuroscience, psychology, medical physics, or related fields. - Prior experience in any of the following areas: Diffusion MRI processing, diffusion MRI tractography, interest in peripheral nerve imaging - Good knowledge of scripting languages in a Linux-based environment, in particular Bash and Python - Good knowledge of diffusion MRI and tractography processing frameworks, in particular MRtrix3 and FSL - Ability to work independently and deliver on schedule. - Excellent interpersonal and communication skills. - Committed to continuous learning and improvement. More information about the positions can be found here: https://www.hodaielab.com/ Interested candidates are encouraged to reach out to Dr. Mojgan Hodaie directly to discuss the positions. Best regards, Patcharaporn Srisaikaew, PhD Postdoctoral Researcher | Hodaie Surgical Imaging Laboratory, Division of Brain, Imaging and Behaviour at Krembil Brain Institute, Toronto Western Hospital, University Health Network 135 Nassau St, Toronto, ON, M5T 1M8

Sept. 25, 2024

50+ positions in Machine Learning and AI

by Robert Legenstein

Call for Applications For the recently established Cluster of Excellence CoE Bilateral Artificial Intelligence (BILAI), funded by the Austrian Science Fund (FWF), we are looking for more than 50 PhD students and 10 Post-Doc researchers (m/f/d) to join our team at one of the six leading research institutions across Austria (see below). In BILAI, major Austrian players in Artificial Intelligence (AI) are teaming up to work towards Broad AI. As opposed to Narrow AI, which is characterized by task-specific skills, Broad AI seeks to address a wide array of problems, rather than being limited to a single task or domain. To develop its foundations, BILAI employs a Bilateral AI approach, effectively combining sub-symbolic AI (neural networks and machine learning) with symbolic AI (logic, knowledge representation, and reasoning) in various ways. Harnessing the full potential of both symbolic and sub-symbolic approaches can open new avenues for AI, enhancing its ability to solve novel problems, adapt to diverse environments, improve reasoning skills, and increase efficiency in computation and data use. These key features enable a broad range of applications for Broad AI, from drug development and medicine to planning and scheduling, autonomous traffic management, and recommendation systems. Prioritizing fairness, transparency, and explainability, the development of Broad AI is crucial for addressing ethical concerns and ensuring a positive impact on society. The research team is committed to cross-disciplinary work in order to provide theory and models for future AI and deployment to applications. CoE Research Institutions: Johannes Kepler Universität Linz (JKU Linz) Technische Universität Wien (TU Wien) Alpen-Adria-Universität Klagenfurt (AAU) Institute of Science and Technology Austria (ISTA) Technische Universität Graz (TU Graz) Wirtschaftsuniversität Wien (WU Wien) The call for applications is available at https://www.bilateral-ai.net/jobs/ -- Dr. Robert Legenstein Univ.-Professor Institute of Theoretical Computer Science Graz University of Technology Inffeldgasse 16b/I, 8010 Graz, Austria http://www.igi.tugraz.at/legi/ Follow @CompLegenstein on Twitter. WebEx meeting room: https://tugraz.webex.com/meet/robert.legenstein ++43/316/873-5824 ----------------------------------

Sept. 25, 2024

School on the Origins of Life, Behavior and Cognition 2025

by Ahmed El Hady

** *School on the Origins of Life, Behavior and Cognition* *March 10-21, 2025* *ICTP-SAIFR, São Paulo, Brazil* */Application Deadline:/December 28, 2024* School on Origins is an interdisciplinary school that tackles the foundational questions concerning the origins of biophysical systems which include but are not limited to : molecular, cellular, neural and behavioral systems. We aim to find principles shared across systems using tools from statistical physics, mathematical analysis and numerical simulations to explore these questions. We have invited researchers that work both on the experimental and theoretical side to cover a variety of biophysical systems and theoretical approaches. The school is aimed at graduate students either at the master’s or PhD level who have a strong quantitative background and a keen interest to pursue interdisciplinary research. We invite students pursuing degrees in physics, computer science, engineering, or mathematics. Those pursuing degrees in biology need to provide evidence of strong and extensive quantitative background in topics such as calculus, dynamical systems and numerical programming. /There is no registration fee and limited funds are available for travel and local expenses./ *Organizers:* * *Ahmed El Hady* (Center for Collective Animal Behavior, Max Planck Institute and Univ.Konstanz, Germany) * *Antonio C. Roque* (USP Ribeirão Preto, Brazil) * *Daniel Y. Takahashi* (UFRN, Brazil) *Lecturers:* * *Suzanne Still* (University of Hawaii at Mānoa, USA) * *Randall Beer* (Indiana University Bloomington, USA) * *Asif Ghazanfar* (Princeton University, USA) * *Don Katz* (Brandeis University, USA) * *Gandhimohan M. Viswanathan* (Universidade Federal do Rio Grande do Norte – UFRN, Brazil) * *Bruno Mota* (Federal University of Rio de Janeiro, Brazil) * *Ana Amador* (University of Buenos Aires, Argentina) All details and application procedure can be found here: https://www.ictp-saifr.org/solbc2025/ <https://www.ictp-saifr.org/solbc2025/> . Please let me know if you have any questions, All the best regards, Ahmed El hady Dr. Ahmed El Hady Research Group Leader Cluster for Advanced Study of Collective Behavior University of Konstanz / Max Planck Institute of Animal Behavior Universitätsstraße 10, 78464 Konstanz Room ZT 907 Postbox 687 Tel.: +49 7531 88-4742

Sept. 25, 2024

Senior post-doctoral position in Theoretical and Computational Neuroscience

by Matteo Marsili

"Rita Levi-Montalcini" Senior Postdoctoral Fellowship The Quantitative Life Sciences (QLS) section of the Abdus Salam International Centre for Theoretical Physics (ICTP) seeks applications for one postdoctoral position starting spring/summer 2025 from outstanding young scientists of any nationality with a strong research record. Candidates should be able to carry active multidisciplinary research in the area of Theoretical and computational neuroscience Candidates from underrepresented groups are particularly encouraged to apply. ICTP is a UNESCO Category 1 research institute supporting science and education in the developing world, and promotes worldwide initiatives for the career development of Women in Science. The QLS section provides a unique international, multidisciplinary research environment for postdoctoral fellows with about 15 group members (faculty, postdocs, graduate students and visitors) an intense program of workshops and conferences, close collaborations with local institutions (SISSA, ICGEB, Trieste University) and internationally-renowned research institutions. Postdoctoral fellows are encouraged, and supported, to participate in activities in developing countries in order to promote the mission of the ICTP and to contribute to the teaching activities of the ICTP QLS Diploma program. Application deadline: 15 December 2024 More information at: https://www.ictp.it/opportunity/rita-levi-montalcini-senior-postdoctoral-fe… <https://www.ictp.it/opportunity/rita-levi-montalcini-senior-postdoctoral-fe…> Matteo Marsili Senior Research Scientist, Abdus Salam ICTP, Strada Costiera 11, 34014, Trieste Ph: +390402240461, fax: +3904022407461, email: marsili(a)ictp.it

Sept. 23, 2024

Gatsby Unit PhD Programme 2025: Applications now open

by Lin, I-Chun

PhD Programme in Theoretical Neuroscience and Machine Learning Deadline: 11 November 2024 The Gatsby Computational Neuroscience Unit is a leading research centre focused on theoretical neuroscience and machine learning. We study (un)supervised and reinforcement learning in brains and machines; inference, coding and neural dynamics; Bayesian and kernel methods, and deep learning; with applications to the analysis of perceptual processing and cognition, neural data, signal and image processing, machine vision, network data and nonparametric hypothesis testing. The Unit provides a unique opportunity for a critical mass of theoreticians to interact closely with one another and with researchers at the Sainsbury Wellcome Centre for Neural Circuits and Behaviour (SWC), the Centre for Computational Statistics and Machine Learning (CSML) and related UCL departments such as Computer Science; Statistical Science; Artificial Intelligence; the ELLIS Unit at UCL; Neuroscience; and the nearby Alan Turing and Francis Crick Institutes. Our PhD programme provides a rigorous preparation for a research career. Students complete a 4-year PhD in either machine learning or theoretical/computational neuroscience, with minor emphasis in the complementary field. Courses in the first year provide a comprehensive introduction to both fields and systems neuroscience. Students are encouraged to work and interact closely with SWC/CSML researchers to take advantage of this uniquely multidisciplinary research environment. Applicants should have a strong analytical and quantitative background, a keen interest in neuroscience, machine learning or both, and a relevant first degree, for example in Mathematics, Statistics, Computer Science, Engineering, Physics, Neuroscience or Cognitive Psychology. Full funding is available regardless of nationality. The unit also welcomes applicants who have secured or are seeking funding from other sources. Applications should be submitted directly to us via the online portal. For programme details and how to apply, see www.ucl.ac.uk/gatsby/study-and-work/gatsby-unit-phd-programme<https://www.ucl.ac.uk/gatsby/study-and-work/gatsby-unit-phd-programme>. -- I-Chun Lin, PhD Scientific Programme Manager Gatsby Computational Neuroscience Unit, UCL

Sept. 22, 2024

Multiple Tenured and Tenure-Track Faculty Positions in Human Intelligence, Artificial Intelligence and Machine Learning

by Zoran Tiganj

The College of Arts and Sciences <https://college.indiana.edu/> and the Luddy School of Informatics, Computing, and Engineering <https://luddy.indiana.edu/> at Indiana University Bloomington invite applications for multiple open-rank, tenured or tenure-track faculty positions in one or more of the following areas: artificial intelligence, human intelligence, and machine learning to begin in Fall 2025 or after. Appointments will be in one or more departments, including Cognitive Science <https://cogs.indiana.edu/index.html>, Computer Science <https://cs.indiana.edu/index.html>, Informatics <https://informatics.indiana.edu/index.html>, Intelligent Systems Engineering <https://engineering.indiana.edu/?_gl=1*1emk78c*_gcl_au*MTQ4MTUwMTkzLjE3MjIz…..> , Mathematics, <https://math.indiana.edu/index.html> and Psychological and Brain Sciences <https://psych.indiana.edu/index.html>. We encourage applications from scholars who apply interdisciplinary perspectives across these fields to a variety of domains, including cognitive science, computational social sciences, computer vision, education, engineering, healthcare, mathematics, natural language processing, neuroscience, psychology, robotics, virtual reality, and beyond. Reflecting IU’s strong tradition of interdisciplinary research, we encourage diverse perspectives and innovative research that may intersect with or extend beyond these areas. The positions are part of a new university-wide initiative that aims to transform our understanding of human and artificial intelligence, involving multiple departments and schools, as well as the new Luddy Artificial Intelligence Center <https://ai.luddy.indiana.edu/index.html>. *Application Procedures:* To apply, submit a CV, letter of application that describes your research, teaching, and engagement with fostering a diverse and welcoming work environment, and provide the names of three references. References will only be contacted for those candidates moving to advanced stages of consideration. Interested candidates should submit applications at: https://indiana.peopleadmin.com/postings/25788. Application review begins November 1, 2024, but we welcome submissions after this date. We accommodate varied timelines across disciplines to ensure all qualified applicants are considered. The position’s expected start date is August 1, 2025; however, alternative dates can be considered. All queries about the position or the application procedures may be addressed to faculty1(a)indiana.edu. ---- Zoran Tiganj, PhD Assistant Professor Department of Computer Science Luddy School of Informatics, Computing, and Engineering Department of Psychological and Brain Sciences Indiana University Bloomington https://homes.luddy.indiana.edu/ztiganj/ <https://homes.luddy.indiana.edu/ztiganj/%E2%80%8B>

Sept. 22, 2024

[Call for Data & Paper] 2nd International Whole Brain Architecture Workshop (Feb. 24th, 2025)

by Hiroshi Yamakawa

Dear Colleagues, << Early Bird Alert: Paper Abstract Submission Deadline - November 1st, 2024 (JST) >> We are pleased to announce the Second International Whole Brain Architecture Workshop, building on the remarkable success of our inaugural event. (The first online workshop, held in July 2024, attracted over 100 participants and generated significant enthusiasm in the field.) This second workshop will be held on February 24th, 2025 ( https://wba-initiative.org/en/24521/ ). Registration for presentations opens on October 20th, 2024, and we eagerly anticipate your submissions of BRA data. About This Workshop: The development of brain-inspired artificial intelligence, which aims to understand and simulate the computational functions of the brain, is a promising approach to reproducing human-like problem-solving abilities. This ambitious goal requires knowledge from diverse research fields, including neuroscience and cognitive science. Given the vast amount of knowledge needed, it is crucial to accumulate and share standardized design information as open knowledge. This workshop serves as a platform for cooperation and sharing of standardized design information (BRA data) essential for developing brain-inspired AI. Additionally, it provides an opportunity to enhance the academic value of submitted datasets through expert discussions and peer review. Why Participate: • Contribute to the cutting-edge field of brain-inspired AI • Share your research with a global audience of experts • Gain insights from interdisciplinary discussions • Potential for your work to be published on the BRA Editorial System (BRAES) https://ggle.io/6ybj We invite submissions of BRA data and accompanying papers. Accepted data and papers will be published on BRAES, with paper DOIs shared on the workshop program page. We believe that this sharing and integration of brain-inspired AI design information will significantly advance the field. Date and Location (hybrid): • Date: February 24th, 2025 (Monday) • Venue: Tokyo, Japan (on-site) and online (details TBA) Important Dates: • BRA Data submission opens: October 20th, 2024 (JST) • Paper abstract submission deadline: November 1st, 2024 (JST) • BRA Data submission deadline: December 20th, 2024 (JST) • Full Paper submission deadline: January 4th, 2025 (JST) • Completed BRA Data submission deadline: January 4th, 2025 (JST) • Paper notification: January 24th, 2025 (JST) For detailed submission guidelines, please visit: https://wba-initiative.org/en/24521/ We look forward to welcoming you and your colleagues to present data and papers and to engage in stimulating discussions that will shape the future of brain-inspired AI. If you have any questions, please don't hesitate to contact the Workshop organizers at bra-support(a)wba-initiative.org. Join us in advancing the frontier of brain-inspired artificial intelligence! Best regards, BRA Support Team

Sept. 22, 2024

Responsible AI Initiative at the University of Utah

by Rob MacLeod

Dear Colleagues, The Scientific Computing and Imaging (SCI) Institute <https://www.sci.utah.edu/> at the University of Utah is pursuing a new initiative in Responsible AI (RAI) and there are fellowships available now for faculty and postdocs. To learn more about the fellowships, please see this link <https://rai.utah.edu/opportunities/>and to learn more about the RAI Initiative, check here <https://rai.utah.edu/>. Of special relevance to this list is the RAI thrust in Behavioral Health and Wellness. Read more about this thrust here <https://rai.utah.edu/about/healthcare-and-wellness/>. Best, Rob Rob MacLeod, PhD Deputy Director, Scientific Computing and Imaging (SCI) Institute Professor and Vice-Chair of Biomedical Engineering Adjunct Professor of Internal Medicine Senior Investigator, Cardiovascular Research and Training Institute (CVRTI) University of Utah 72 Central Campus Drive Salt Lake City, Utah 84112 Email: macleod(a)sci.utah.edu <mailto:macleod@sci.utah.edu> URL: www.sci.utah.edu/~macleod <http://www.sci.utah.edu/~macleod>

Sept. 20, 2024

SNUFA 2024 abstract submission closing soon

by Friedemann Zenke

This is a friendly reminder that the SNUFA 2024 abstract submission closes soon (deadline Sept 27). SNUFA 2024: 5-6 November (online)--your friendly online focus meeting on spiking neural networks that compute. See https://snufa.net/2024 for details. This year's invited speakers are Chiara Bartolozzi (IIT Genova), David Kappel (University of Bochum), Anna Levina (Uni Tübingen), and Christian Machens (Champalimaud). Like every year, the workshop brings together computational neuroscience, machine learning, and neuromorphic engineering researchers to present their work and discuss how to translate these findings into a better understanding of neural circuits. The workshop is traditionally online. Topics include artificial and biologically plausible learning algorithms and the dissection of trained spiking circuits toward understanding neural processing. We aim to have a manageable number of talks with ample discussion time. SNUFA 2024 is brought to you by Melika Payvand, Laurent Perrinet, Dan Goodman, and Friedemann Zenke. -- https://snufa.net/2024

Sept. 20, 2024

Postdoc positions in cognitive neuroscience and computational psychiatry, University of Tuebingen, Germany

by Susan Fischer

**Apologies for cross-posting** Dear colleagues, The "Developmental Computational Psychiatry" lab and the W3 professorship "Computational Psychiatry" led by Tobias Hauser at the University of Tübingen (Germany) is currently hiring new postdocs. The focus of the lab is to better understand the computational and neural mechanisms underlying decision making and learning, and how these processes go awry in patients with mental illnesses. The successful candidates will have the chance to work in a highly dynamic and inspiring environment and to collaborate closely with Prof Peter Dayan and the Max-Planck Institute for Biological Cybernetics. Concretely, we are looking for the following candidates: * Postdoc with experimental & neuroimaging background * Postdoc with computational modelling background More information about the positions can be found here: https://devcompsy.org/join-the-lab/ Interested candidates are encouraged to reach out to Tobias Hauser directly to informally discuss the positions. Best regards, Susan. ************************************************ Susan Fischer Coordinator Alexander von Humboldt Professorship Prof Peter Dayan & W3-Professorship ‘Computational Psychiatry’, Prof Tobias Hauser Eberhard Karls Universität Tübingen Equal Opportunities Officer Max Planck Institute for Biological Cybernetics Max-Planck-Ring 8 72076 Tübingen Germany ************************************************

Sept. 20, 2024

NSF-Simons NITMB Fellows: Now Accepting Applications

by William L. Kath

<https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> NSF-Simons NITMB Fellows Program Applications due October 15, 2024 NITMB is seeking early-career researchers who have interest in transforming biological research and inspiring new mathematical discoveries. This opportunity is open to researchers who want to develop mathematical, theoretical, and computational approaches to study any area of biology. Under the mentorship of NSF-Simons NITMB leadership and faculty members, fellows will develop an independent research program and foster collaborations with NITMB faculty members or others outside the Institute. Applicants will need to have completed a doctoral degree by September 2025 in one of the following fields: * Mathematical Sciences * Biological Sciences * Computer Sciences * Engineering * or related fields Click here for the Submission Portal <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> Benefits * Competitive salary * Generous research and travel stipends * Access to NITMB resources and both Northwestern and UChicago campuses * A thriving intellectual community with mentorship from NITMB leadership and Faculty Members * Offices located at the iconic John Hancock Center, 875 N Michigan Ave, in Chicago, Illinois * Guaranteed acceptance to NITMB workshops * No teaching obligations, allowing full dedication to groundbreaking research * Opportunities to lead and participate in NITMB activities and outreach programs Appointments can start as early as April 1, 2025, but no later than September 1, 2025, and will be at the internal University rank of Postdoctoral Scholar. The position is open to individuals who are less than seven years post attainment of their Ph.D. degree. Learn More <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> Application Materials Upload the following documents to the submission portal. * Cover letter * Curriculum vitae * List of publications and preprints * Description of research interests to be pursued at the NITMB * Three Letters of Recommendation from faculty members or senior research scientists who are active in the field of study in question. Uploaded here. <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> Required materials and letters of reference must be received by October 15, 2024. Expected Timeline * Applications due October 15, 2024 * Review Period | October 1 - 31, 2024 * Zoom Interviews | November 11 - 22, 2024 * Notice of Waitlist | week of November 11, 2024 * In-Person Interviews | December 9 - 13, 2024 * Notice of Waitlist | week of December 9, 2024 * Decisions | December 16 - 31, 2024 * Offers | January 6 - 10, 2025 <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> The NSF-Simons National Institute for Theory and Mathematics in Biology (NITMB) aims to integrate the disciplines of mathematics and biology in order to transform the practice of biological research and inspire new mathematical discoveries. NITMB is a partnership between Northwestern University and the University of Chicago. It is funded by the National Science Foundation DMS-2235451 and the Simons Foundation MP-TMPS-00005320. LinkedIn <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> X <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> Instagram <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> Facebook <https://urldefense.com/v3/__https://jodrq9gbb.cc.rs6.net/tn.jsp?f=0015KxzjW…> NITMB | 875 N Michigan Ave.Suite 4010 | Chicago, IL 60611 US Unsubscribe<https://urldefense.com/v3/__https://visitor.constantcontact.com/do?p=un&m=0…>| Update Profile <https://urldefense.com/v3/__https://visitor.constantcontact.com/do?p=oo&m=0…>| Constant Contact Data Notice <https://urldefense.com/v3/__http://www.constantcontact.com/legal/about-cons…>

Sept. 20, 2024

Mouse cortical neurophysiology postdoc position in Jaeger lab at Emory University

by Jaeger, Dieter

The Jaeger lab at Emory University https://scholarblogs.emory.edu/jaegerlab/ is looking to recruit a postdoctoral fellow to work on our NIH funded project in studying the cell-type specific function of motor and premotor cortex in mice. The technical approaches will include mouse behavioral training and behavior analysis, optogenetics, Neuropixels recording, and voltage imaging. A specific objective is to compare normal and Parkinsonian cortical function. The successful candidates will have prior expertise in rodent neurophysiology and a strong background in data analysis. Emory University provides a vibrant and supportive environment for postdoctoral training including grant writing workshops and teaching opportunities, as well as strong training in movement disorders. The Atlanta location allows for affordable living conditions in a cosmopolitan setting with a world class airport. Compensation is dependent on prior experience and is aligned with the NIH NRSA schedule with additional health insurance and other benefits. If interested & qualified, please contact djaeger(a)emory.edu<mailto:djaeger@emory.edu>. Dieter Jaeger Professor, Department of Biology Emory University djaeger(a)emory.edu<mailto:djaeger@emory.edu> https://scholarblogs.emory.edu/jaegerlab/

Sept. 19, 2024

Fwd: CFP: FLAIRS38, Neural Network Special Track, Daytona Beach, FL, May 20-23

by David B

*Neural Networks and Data Mining Special Track* <http://flairs-38.s3-website.us-east-2.amazonaws.com/> *at the * *38th International FLAIRS Conference* <https://www.flairs-38.info/home> Abstract submission deadline: January 20, 2025 Paper submission deadline: January 27, 2025 Paper Acceptance Notification: March 10, 2025 *Daytona Beach, Florida, USA, May 20-23, 2025Call for Papers* The Florida Artificial Intelligence Research Symposium (FLAIRS) is a medium-sized interdisciplinary AI conference which is noted for its double-blind reviewing, free tutorials, and beautiful venues. This special track will be devoted to neural networks and data mining with the aim of presenting new and important contributions in these areas. Papers and contributions are encouraged for any work related to neural networks, data mining, or the intersection thereof. Topics of interest may include (but are not limited to): Applications such as Pattern Recognition, Applications, Generative AI methods and applications, Control and Process Monitoring, Biomedical Applications, Robotics, Text Mining, Diagnostic Problems, Power Systems, Signal Processing; Intelligence analysis, medical and health applications, text, video, and multi-media mining, E-commerce and web data, financial data analysis, cybersecurity, remote sensing, earth sciences, bioinformatics, and astronomy. Neural networks such as new developments in Back Propagation, RBF, SVM, Deep Learning, Ensemble Methods, Kernel Approaches; Hybrid approaches such as Neural Networks/Genetic Algorithms, Causal Nets trained with Backpropagation, Neural Network/Fuzzy Logic and Acceleration of neural network models via software or hardware. Other modeling algorithms such as hidden Markov models, decision trees, statistical methods, or probabilistic methods; case studies in areas of application, or over different algorithms and approaches; graph modeling, pattern discovery, and anomaly detection; feature extraction and selection; post-processing techniques such as visualization, summarization, or trending; preprocessing and data reduction;and knowledge engineering or warehousing. *Submission Guidelines* Papers must follow the FLAIRS template guidelines ( https://www.flairs-38.info/call-for-papers) and be submitted as a PDF through the EasyChair conference system. (Do NOT use a fake name for your EasyChair login; your EasyChair account information is hidden from reviewers.) FLAIRS will not accept any paper which, at the time of submission, is under review for or has already been published or accepted for publication in a journal or another conference. Authors are also required not to submit their papers else where during FLAIRS's review period. These restrictions apply only to journals and conferences, not to workshops and similar specialized presentations with a limited audience and without archival proceedings. Authors will be required to confirm that their submissions conform to these requirements at the time of submission. *Conference Proceedings* Papers will be refereed and all accepted papers will appear in the conference proceedings. *Track Co-chairs:* David Bisant, Central Security Svcs, bisant(a)umbc.edu Steven Gutstein, Booz Allen Hamilton, s.m.gutstein(a)gmail.com Lenin Mookiah, eBay, lenin.world(a)gmail.com *Program Committee Members:* Martin Atzmueller(University of Kassel, Germany) Juan Banda (Montana State University, USA) Lori Bogren (SomaLogic, USA) Chiranjit Dutta (eBay, USA) Sirisha Velampalli (Brane Enterprise, India) Tomasz Palczewski (SAP, USA) Sergei Dolenko (M.V.Lomonosov Moscow State University, Russian Federation) Sheikh Rabiul Islam (University of Hartford, USA) Lawrence Holder (Washington State University, USA) Diane Cook (Washington State University, USA) Jacek Kukluk (Dana-Farber/Harvard Cancer Center, USA) Katrina Kutchko (Verizon Business Solutions, USA) Roberto Santana (University of Basque Country, Spain) Hujun Yin (University of Manchester, UK) Prabin Lamichhane (Mastercard)

Sept. 18, 2024

Faculty positions in ML and AI, Canada

by Luczak, Artur

New job: Tenure Track Associate Professor at the University of Lethbridge, Alberta, Canada, with a focus on the application of AI to e.g. Neuroscience. This position is a prestigious Canada Research Chair (CRC), which comes with generous funding. Here is link: https://uleth.peopleadmin.ca/postings/7749 Best, Artur Luczak https://people.uleth.ca/~luczak/

Sept. 18, 2024

COSYNE 2025: Call for Workshop Proposals; Abstract submission is open

by Tomas Hromadka

==================================================== Computational and Systems Neuroscience 2025 (Cosyne) MAIN MEETING 27 March - 30 March 2025 Montreal, Canada WORKSHOPS 31 March - 01 April 2025 Mont-Tremblant, Canada www.cosyne.org ==================================================== IMPORTANT DATES Abstract submission is now open. Workshop proposal submission is now open. Workshop proposal submission deadline: 04 October 2024 Abstract submission deadline: 23 October 2024 ---------------------------------------------------- COSYNE MEETING & WORKSHOPS ---------------------------------------------------- The annual Cosyne meeting provides an inclusive forum for the exchange of empirical and theoretical approaches to problems in systems neuroscience, in order to understand how neural systems function. The MAIN MEETING is single-track. A set of invited talks is selected by the Executive Committee, and additional talks and posters are selected by the Program Committee, based on submitted abstracts. The WORKSHOPS feature in-depth discussion of current topics of interest, in a small group setting. Cosyne topics include but are not limited to: neural basis of behavior, sensory and motor systems, circuitry, learning, neural coding, natural scene statistics, dendritic computation, neural basis of persistent activity, nonlinear receptive field mapping, representations of time and sequence, reward systems, decision-making, synaptic plasticity, map formation and plasticity, population coding, attention, neuromodulation, and computation with spiking networks. We would like to foster increased participation from experimental groups as well as computational ones. Please circulate widely and encourage your students and postdocs to apply. When preparing an abstract, authors should be aware that not all abstracts can be accepted for the meeting. Abstracts will be selected based on the clarity with which they convey the substance, significance, and originality of the work to be presented. ----------------------------------------------------- CALL FOR WORKSHOP PROPOSALS ----------------------------------------------------- A series of workshops will be held after the main Cosyne meeting. The goal is to provide an informal forum for the discussion of important research questions and challenges. Controversial issues, open problems, comparisons of competing approaches, and alternative viewpoints are encouraged. Workshop proposals deadline: 04 October 2024 To submit your Cosyne 2025 Workshop Proposal, please visit Cosyne.org -> Workshops -> Call for Proposals The overarching goal of all workshops should be the integration of empirical and theoretical approaches, in an environment that fosters collegial discussion and debate. - There will be 6-10 workshops/day, running in parallel. - Each workshop is expected to draw between 15 and 80 people. - The workshops will be split into morning and late afternoon sessions. - Workshops will be held in Mont-Tremblant, QC, Canada. - Workshop speakers do NOT receive free registration, travel expenses, or accommodation for either the main meeting or the workshop sessions. Organizers should let invited speakers know that they are expected to pay for workshop registration fees. Workshop organizer responsibilities include coordinating workshop participation and content, scheduling all speakers, submitting a final schedule for the workshop program, and moderating the discussion. Organizers can, but need not, be speakers. One complimentary (free) organizer registration is provided per workshop. For workshops with two organizers, the free registration can be given to one of the organizers or split evenly between them. Any required multimedia resources beyond a projector, screen, and microphones will be the responsibility of the workshop organizers to coordinate with Cosyne and the workshop venue A/V staff. EVALUATION CRITERIA As stated above, the goal of Cosyne workshops is to provide an interactive, informal forum for discussions. Relevant topics include, but are not limited to: sensory processing; motor planning and control; functional neural circuits; motivation, reward and decision making; learning and memory; adaptation and plasticity; neural coding; neural circuitry and network models; and methods in computational or systems neuroscience. Workshop proposals will be evaluated by the Cosyne Workshop Chairs, and a subset of the proposals will be selected. The proposals will be evaluated according to the following six metrics (which will be weighted equally): - Relevance to the Cosyne community - Integration of experimental and theoretical issues - Current interest in the topic in the scientific community - Potential for new research directions and interactions to emerge - Distinctive scope/approach compared to other workshops (including previous years’) - Diversity and equity in the proposed speaker (we are looking for representation of women or nonbinary individuals, individuals from other underrepresented groups, and a balance of established and early career researchers) In order to foster discussion within Workshops and reduce overlap between workshops, organizers should inform invited speakers that a speaker can take part in no more than two Workshops. The proposals will include: - Name(s) and email address(es) of the organizers (2 organizers per session is strongly recommended, but 3 will be allowed). - A title. - A brief description of 1) what the workshop will address and accomplish, 2) why the topic is of interest, 3) who is the targeted group of participants. - Names and email addresses of speakers, who should already have agreed to participate should the proposal be accepted. - Proposed workshop length (1 or 2 days). Most workshops will be limited to a single day. If you think your workshop needs two days, please explain why. - A brief resume of the workshop organizer(s) along with a short list of workshop-relevant publications (about half a page total). - A description of how you have addressed diversity and equity in your workshop. Experience has shown that the best discussions during a workshop are those that arise spontaneously. A good way to foster these is to have short talks and long question periods (e.g. 30+15 minutes), and to have plenty of breaks. We recommend keeping the number of talks small (i.e., fewer than 10 talks per day). WORKSHOP COSTS Detailed registration costs, etc, will be at www.cosyne.org. Please note: Cosyne does NOT provide travel funding for workshop speakers. Organizers should let invited speakers know that they are expected to pay for workshop registration fees. Participants are encouraged to register early, in order to qualify for discounted registration rates. One complimentary (free) organizer registration is provided per workshop. For workshops with two organizers, the free registration can be given to one of the organizers or split evenly between them. COSYNE 2025 WORKSHOP CHAIRS Workshop Chairs: SueYeon Chung (NYU) and Guillaume Lajoie (MILA/U Montreal) COSYNE WORKSHOPS CONTACT workshops [at] cosyne.org ----------------------------------------------------- COSYNE 2025 COMMITTEES ----------------------------------------------------- ORGANIZING COMMITTEE General Chairs: Bing Brunton (U Washington) and Chandramouli Chandrasekaran (Boston U) Program Chairs: Tatiana Engel (CSHL) and Kevin Franks (Duke) Workshop Chairs: SueYeon Chung (NYU) and Guillaume Lajoie (MILA/U Montreal) Tutorial Chair: Talmo Pereira (Salk) DEIA Committee: Denise Cai (Mount Sinai) and Luke Sjulson (Albert Einstein) Undergraduate Travel Chairs: Kimberly Stachenfeld (DeepMind) and Marcelo Mattar (NYU) Fundraising Chair: Michael Long (NYU) Social Media Chair: Sabera Talukder (Caltech) Audio-Video Media Chair: Carlos Stein Brito (Chamaplimaud) Poster Design: Maja Bialon PROGRAM COMMITTEE Tatiana Engel (CSHL) Co-chair Kevin Franks (Duke) Co-chair Mikio Aoi (UCSD) Arkarup Banerjee (CSHL) Marcus Benna (UCSD) Adrian Bondy (Princeton) Timothy Buschman (Princeton) Celine Cammarata (Duke) Alex Cayco Gajic (Ecole Normale Superieure) Hannah Choi (Gatech) Benjamin Cowley (CSHL) Carina Curto (Brown) Brian DePasquale (Boston U) Sridhar Devarajan (Indian Inst Sci) Laura Driscoll (Stanford) Ann Duan (UCL) Lea Duncker (Stanford) Annegret Falkner (Princeton) Arseny Finkelstein (Tel Aviv U) Rainer Friedrich (Friedrich Miescher Institute) Juan Gallego (Imperial) Matthew Golub (U Washington) Bilal Haider (Georgia Tech) Kiah Hardcastle (Harvard) Ann Hermundstad (Janelia) Michele Insanally (U Pitt) Monika Jadi (Yale) Jonathan Kao (UCLA) Kohitij Kar (York U) Ann Kennedy (Northwestern) Guillaume Lajoie (MILA) Anna Levina (U Tubingen) Laura Lewis (MIT) Camilo Libedinsky (National U Singapore) Ashok Litwin-Kumar (Columbia) Laureline Logiaco (MIT) Emily Mace (Max Planck) Francesca Mastrogiuseppe (Champalimaud) Luca Mazzucato (U Oregon) Jorge Mejias (U Amsterdam) Jonathan Michaels (York U) Eilif Muller (U Montreal) James Murray (U Oregon) Hendrikje Nienborg (NIH) Gouki Okazawa (Chinese Acad Sci) Marino Pagan (UCL) Chethan Pandarinath (Emory) Angelique Paulk (Harvard) Hannah Payne (Columbia) Talmo Pereira (Salk) Erin Rich (Mount Sinai) Ben Scott (Boston U) Nicholas Steinmetz (U Washington) Carsen Stringer (HHMI) Marie Suver (Vanderbilt) Tatjana Tchumatchenko (U Bonn) John Tuthill (U Washington) Ali Weber (Bryn Mawr) Brady Weissbourd (MIT) Alex Williams (NYU) Klaus Wimmer (CRM) Brad Wyble (Penn State) EXECUTIVE COMMITTEE Stephanie Palmer (U Chicago) Anne-Marie Oswald (U Pittsburgh) Alexandre Pouget (U Geneva) Anthony Zador (CSHL) CONTACT meeting [at] cosyne.org ----------------------------------------------------- COSYNE MAILING LISTS ----------------------------------------------------- Please consider adding yourself to Cosyne mailing lists (groups) to receive email updates with various Cosyne-related information and join in helpful discussions. See Cosyne.org -> About-> Mailing lists for details.

Sept. 17, 2024

workshop organized by the Neuroscience Gateway project on October 5th starting at 8:30am at the campus of University of Chicago

by Majumdar, Amitava

We are organizing a workshop in Chicago on October 5th , 2024 starting at 8:30 am (Central time) and till 11:30am (Central time) at the campus of University of Chicago. The agenda is provided below. If you are interested in attending, please email Amit Majumdar (amajumdar(a)ucsd.edu) to receive the link to register. Registration is free but due to limited seatings, we are requesting registration and it will also provide the address of the location of the workshop. AGENDA (October 5th, 2024, University of Chicago) 8:30 AM - 8:45 AM Welcome 8:45 AM - 9:15 AM Title: Human Neocortical Neurosolver: A Software Tool for Cell and Circuit Level Interpretation of MEG/EEG signals Authors: Nicholas Tolley, Stephanie Jones Affiliation: Brown University Abstract: MEG/EEG signals are correlated with nearly all healthy and pathological brain functions. However, it is still extremely difficult to infer the underlying cellular and circuit level origins. This limits the translation of MEG/EEG signals into novel principles of information processing, or into new treatment modalities for pathologies. To address this limitation, we built the Human Neocortical Neurosolver (HNN): an open-source software tool to help researchers and clinicians without formal computational modeling or coding experience interpret the neural origin of their human MEG/EEG data. The foundation of HNN is a biophysically-detailed neocortical model, representing a patch of neocortex receiving thalamic and corticocortical drive. The HNN model can be accessed through a user-friendly interactive graphical user interface (GUI) or through a Python scripting interface. Tutorials are provided to teach users how to begin to study the cell and circuit level origin of sensory event related potentials (ERPs) and low frequency rhythms. The package is available to install with a single command on PyPI (pip install hnn_core), is unit tested and extensively documented. HNN is additionally accessible through computing resources offered by the Neuroscience Gateway (NSG) enabling large simulation workloads. We will give an overview of the background of HNN, describe the newest features added to the software, and highlight recent research projects using HNN. 9:15 AM - 9:45 AM Title: The NEMAR Neuromagnetic Data, Tools, and Compute Resource Authors: Scott Makeig1, Kenneth Yoshimoto2, Choonhan Youn2, Dung Troung1, Subhashini Sivagnanam2, Amitava Majumdar2, Arnaud Delorme1 Affiliation: 1Swartz Center for Computational Neuroscience, 2San Diego Supercomputer Center, University of California San Diego Abstract: The recent BRAIN Initiative, funded by the Obama administration, propelled the creation of archives of publicly and other funded scientific data of all types. For human functional neuroimaging, the OpenNeuro.org archive was funded to collect and publicly share data of all types. Its creator, Russ Poldrack, is an fMRI expert. For other imaging modalities, NIMH funded projects to curate data contributed to OpenNeuro. Our NEMAR.org serves that purpose for 'neuroelectromagnetic' data (EEG, MEG, iEEG). Beyond simple data curation, publication of data quality measures and data visualization, NEMAR exemplifies what I believe should become the basic unit of open science, what I call the 'integrated data, tools, and compute resource' (datcor). By teaming with the Neuroscience Gateway team, NEMAR now supports users worldwide in identifying and performing sophisticated computations on increasing amounts of publicly available data - without need for at-best balky data downloads. 9:45 AM - 10:15AM Title: DANDI: Building a collaborative ecosystem for neuroscientific data Authors: Satrajit Ghosh Affiliation: McGovern Institute, MIT Abstract: The DANDI Archive is a community-oriented platform designed to support the sharing, analysis, and re-use of neurophysiology and microscopy data, using the BRAIN Initiative supported standards for data sharing. By providing an open, FAIR-compliant (Findable, Accessible, Interoperable, Reusable) ecosystem, DANDI facilitates collaborative research in neuroscience. It integrates diverse data types, from electrophysiology to imaging, ensuring that researchers can contribute, discover, access, visualize, and compute on standardized datasets seamlessly. This presentation will highlight the key features of DANDI, including its data management infrastructure, open-source tools, and how it promotes transparency, reproducibility, and interdisciplinary collaboration in neuroscience research. 10:15 AM - 10:30 AM BREAK 10:30 AM - 11:00 AM Title: Enhancing Perspectives in Neuroscience Research through Diverse Institutional Partnerships. Author: Elba Serrano Affiliation: New Mexico State University Abstract: Diversity in collaboration is expected to yield more inclusive and representative research outcomes and potentially address more varied needs within a field. By pooling knowledge and resources from different disciplines, institutions, and investigators, researchers can approach problems in neuroscience from multiple angles, leading to more comprehensive and innovative solutions. The nation's 700+ federally designated minority serving institutions (MSIs) comprise about 15% of all degree-granting institutions and educate over 5 million students. This presentation will introduce attendees to the rich constellation of MSIs with a spotlight on Hispanic serving institutions (HSIs), where 65% of the nation's Latino students seek degrees. Drawing on experiences as lead for the NSF HSI National STEM Resource Hub, the speaker will provide an overview of the benefits and challenges in developing collaborations with colleagues at MSIs, as well as strategies for identifying partners and developing authentic relationships that further neuroscience research. 11:00 AM - 11:30 AM Title: Bio-realistic modeling of the mouse primary visual cortex using large-scale datasets Authors: Shinya Ito1, Darrell Haufler1, Kael Dai1, Joe Aman1, Javier Galván Frail2, Guozhang Chen3, Claudio Mirasso2, Wolfgang Maass4, Anton Arkhipov1 Affiliation: 1. Allen Institute, Seattle, Washington, USA 2. IFISC, University deles Illes Balears, Palma de Mallorca, Spain 3. Peking University, Beijing, China 4. Graz University of Technology, Graz, Austria Abstract: Accurate models of cortical circuits facilitate a deeper understanding of how neural dynamics are shaped and maintained within the brain. We have developed an enhanced, biologically realistic model of the mouse primary visual cortex (V1), building on the framework established by Billeh et al. (Neuron, 2020). This updated model integrates new synaptic physiology data from Campagnola, Seeman et al. (Science, 2022; portal.brain-map.org/connectivity/synaptic-physiology) and detailed connectomics from the IARPA MICrONS dataset (www.microns-explorer.org) refining its connectivity and synaptic dynamics. The resulting model exhibits stable activity patterns before optimization. Moreover, we utilized TensorFlow-based optimization techniques to align model parameters with physiological data, including Neuropixels recordings, achieving key empirical targets such as firing rates and orientation selectivity. This improved model not only enhances our understanding of cortical processing but will also be made publicly available to support further research. ---------------------------------------------------------------------------------------------------- Organizers: Amit Majumdar, Subhashini Sivagnanam, Kenneth Yoshimoto San Diego Supercomputer Center, University of California San Diego Ted Carnevale, Neuroscience Department, Yale School of Medicine, Yale University Co-organizers: Kimberly Grasch and H. Birali Runesha, University of Chicago -----------------------------------------------------------------------------------------------------

Sept. 17, 2024

Workshop "Data-Driven Discovery: AI and Modeling in Biology" at the Allen Institute

by Anton Arkhipov

Dear Colleagues, We will be livestreaming the upcoming workshop "Data-Driven Discovery: AI and Modeling in Biology" organized by Anton Arkhipov (Allen Institute), Tatiana Engel (Princeton), Michael Brenner (Harvard/Google), and Stephen Saalfeld (Janelia). Hosted by the Allen Institute on September 23-25, 2024, the meeting brings together experts who will discuss how problems in biology are being solved using recent developments in both AI and modeling. Please see the streaming link at the meeting website: https://alleninstitute.org/events/data-driven-discovery-ai-and-modeling-in-… The goal of this meeting is to explore how problems in biology are being solved using cutting-edge computational approaches, with the focus on recent developments in both AI and modeling, including merging the two. Biology is a broad field. We aim to connect researchers across a wide range of computational biology to learn from each others’ approaches. Agenda is below (all times listed as Pacific Standard Time). ================================================== Monday, September 23, 2024 2:00–2:15pm Welcome and opening remarks 2:15–3:15pm KEYNOTE- David Baker, University of Washington Protein design for molecular recognition 3:15–3:45pm Bing Brunton, University of Washington Embodied intelligence through integrated neuromechanical models of natural behavior 3:45–4:15pm Andreas Tolias, Stanford University NeuroAI: Building Digital Twins of the Brain Tuesday, September 24, 2024 9:00–9:30am Matheus Viana, Allen Institute for Cell Science Towards a holistic and quantitative stem cell state landscape 9:30–10:00am Kim Stachenfeld, Columbia University/Google DeepMind Learning to Simulate and Control Fluid Dynamics with Graph Neural Networks 10:00–10:30am Armita Nourmohammad, University of Washington Learning the shape of the protein and immune universe 10:30-11:00am Break 11:00–11:30am Mariano Gabitto, Allen Institute for Brain Science Deep generative models for the multimodal analysis of single-cell datasets 11:30–12:00pm Roy Kishony, Technion-Israel Institute of Technology AI driven science 12:00–12:30pm Stefan Mihalas, Allen Institute Why is the activity in the brain so variable? 12:30-2:00pm Break 2:00–2:30pm Michael Elowitz, California Institute of Technology Many-to-many protein networks as flexible computational modules Wednesday, September 25, 2024 9:00–10:00am KEYNOTE- Emily Fox, Stanford University, insitro Machine Learning for Better Medicines 10:00–10:30am Xiaojun Li, Allen Institute for Immunology Application of AI in Immunology Research 10:30-11:00am Break 11:00–11:30am Gokul Upadhyayula, University of California Berkeley Navigating challenges and opportunities with high-resolution in vivo imaging 11:30–12:00pm Laura Driscoll, Allen Institute for Neural Dynamics Fast and slow learning in artificial and biological networks 12:00–12:30pm Eric Shea-Brown, University of Washington Assigning credit through the "other” connectome 12:30-2:00pm Break 2:00–2:30pm Viren Jain, Google Simulating a zebrafish brain with functional connectomics and AI 2:30–3:00pm Kristin Branson - Janelia Research Campus, Howard Hughes Medical Institute What can we learn from deep-learning-based forecasting models of biological time series? 3:00–3:30pm Ben Cowley, Cold Spring Harbor Laboratory Mapping model units to visual neurons reveals population code for social behavior ================================================== Best regards, Anton Arkhipov Investigator, Allen Institute

Sept. 17, 2024

Free hybrid workshop: Linking brain structure & function at the nanoscale

by Audrey Denizot

Dear all, The [ https://team.inria.fr/aistrosight/ | AIstroSight team ] from Inria Lyon, France, is organizing a hybrid workshop on September 26th-27th 2024 entitled "Linking brain structure & function at the nanoscale: an interdisciplinary workshop". This interdisciplinary workshop aims to bring together experts from diverse fields who contribute to improving our understanding of the nanoscale landscape of the nervous system and its impact on brain function, from volume electron microscopy to image analysis, machine learning, deep learning, and computational modeling. Registration is open until September 24th, free but mandatory following [ https://club-de-cellules-gliales.assoconnect.com/collect/description/450527… | this link ] . More information can be found on the workshop website: [ https://adenizot.github.io/workshops/ | https://adenizot.github.io/workshops/ ] Invited speakers: - Carles Bosch, The Francis Crick Institute, England - Corrado Cali, Neuroscience Institute Cavalieri Ottolenghi, Italy - Michael Chirillo, University of Texas, USA - Audrey Denizot, Inria, France - Erik De Schutter, Okinawa Institute of Science and Technology, Japan - Christel Genoud, Université de Lausanne, Switzerland - Daniel Keller, Ecole Polytechnique Fédérale de Lausanne, Switzerland - Constantin Pape, University of Göttingen, Germany - Karin Pernet-Gallay, Université Grenoble Alpes, France - Padmini Rangamani, University of California San Diego, USA - Chris Salmon, McGill University, Canada Best wishes, Audrey Denizot -- Audrey Denizot ------------------------------ PhD, Inria research scientist — — Project-Team AIstroSight — — [ https://team.inria.fr/aistrosight | https://team.inria.fr/aistrosight ] — — — Centre INRIA de Lyon — — — Campus La Doua Bâtiment CEI-2 56, Boulevard Niels Bohr - CS 52132 69603 Villeurbanne - France [ mailto:audrey.denizot@inria.fr | audrey.denizot(a)inria.fr ] | [ https://adenizot.github.io/ | Website ] | [ https://www.linkedin.com/in/audrey-denizot-180684201/ | LinkedIn ] | [ https://twitter.com/ADenizot | Twitter ]

Sept. 16, 2024

PhD and postdoc positions in the Zenke Lab at the FMI, Basel, Switzerland.

by Friedemann Zenke

We are looking for new team members! Please consider applying if you want to build models of how the brain learns and simulates a world model. We have several openings at PhD and postdoc levels, including a collaboration with the Keller Lab at the FMI on designing regulatory elements to target distinct neuronal cell types. For more information and example projects, see http://zenkelab.org/jobs Kind regards, Friedemann

Sept. 16, 2024

Faculty positions in Theory, Computation, Data Science at WashU

by Tavoni, Gaia

Cluster hire in Theory, Computation, and Data Science for Understanding Living Systems, Departments of Biology, Chemistry, and Physics, Washington University in St. Louis Washington University in St. Louis invites applications for tenure-track faculty positions at the rank of assistant or associate professor for a cluster hire in the area of theory, computation, and data science in the departments of Biology, Chemistry, and Physics. Life operates across a diversity of scales, from molecular-scale processes shaping cellular function to the delicate dynamic balance of our biosphere as a whole. System-level properties and processes are affected by interactions operating at all scales and between scales. Understanding these interconnected systems requires an interconnected and multidisciplinary research community. From AI-driven advances in protein structure and dynamics, to advanced imaging methods enabled by quantum sensing, to developing entirely new mathematical and computational frameworks to achieve insight from complex data, transformative advances in life sciences will require the synergistic work of scientists working across disciplinary boundaries. This cluster aims to create a hub of researchers using theoretical, computational, artificial intelligence, statistics, and data-science methods to advance life sciences from molecular to ecological scales. Applicants whose research synergizes with current areas of strength at Washington University will be favorably considered. Applicants whose research includes an experimental component but is primarily focused on developing theoretical, computational, and data-science methods will also be favorably considered. Candidates should have a Ph.D. in Biology, Chemistry, Physics, or a closely related field. Candidates for the rank of Associate Professor should have an outstanding academic record of research, publication, teaching, and service commensurate with tenure at this rank. Joint applications exhibiting a high degree of research synergy will be considered. Duties will include conducting research, teaching, advising students, and participating in departmental governance and university service. Diversity, equity, and inclusion are core values at Washington University, and we seek to create inclusive classrooms and environments in which a diverse array of students can learn and thrive. Applications should consist of a cover letter describing how the candidate’s research fits within the theme of the cluster; a detailed curriculum vitae; statements of research directions (3-5 pages), teaching interests (1 page), and contributions towards promoting an inclusive research culture or community at large (1 page); and contact information for at least three references. Applications should be submitted to https://apply.interfolio.com/152466 by Oct. 18, 2024 to receive full consideration. Washington University in St. Louis has a policy to recruit, hire, train, and promote persons in all job titles without regard to race, color, age, religion, sex, sexual orientation, gender identity or expression, national origin, protected veteran status, disability, or genetic information. *************************************************** Gaia Tavoni, PhD Assistant Professor of Neuroscience Washington University in St Louis ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.

Sept. 14, 2024

Human Neocortical Neurosolver (HNN) Workshop at SFN

by Gao, Joyce

Dear all, We invite you to join us at SFN 2024 for a hands-on Human Neocortical Neurosolver (HNN) Workshop! HNN is a user-friendly software tool for interpreting the cell and circuit level origin of human MEG and EEG signals (Neymotin et al 2020, https://hnn.brown.edu) You can find out more about HNN and register here: https://hnn.brown.edu/workshop-registration/. Seats are limited, so if you are interested, we recommend signing up today! Our best, Jones Computational Neuroscience Lab Brown University, Carney Institute for Brain Science

Sept. 13, 2024

Research Assistant Position in Developmental Cognitive Neuroscience at American University, Washington DC

by Laurie Bayet

*Research Assistant Position in Developmental Cognitive Neuroscience at American University, Washington DC* The Developmental Cognitive Neuroscience Laboratory at American University, located in Washington DC and directed by Dr. Laurie Bayet ( https://www.bayetlab.com/) is currently accepting applications for a full-time, benefits-eligible Research Assistant position to assist on NSF and foundation-funded funded projects investigating infant visual cognition and social communication (e.g., NSF award # 2122961 <https://www.nsf.gov/awardsearch/showAward?AWD_ID=2122961>). The lab uses electro-encephalography (EEG), functional near-infrared spectroscopy (fNIRS), behavioral measures, and machine learning. The position is ideal for an individual seeking to deepen their research experience in preparation for graduate study. *Applicants should apply electronically at https://american.wd1.myworkdayjobs.com/AU/job/Main-Campus-Washington-DC/Res… <https://american.wd1.myworkdayjobs.com/AU/job/Main-Campus-Washington-DC/Res…> and submit a CV and cover letter listing the names and contact information of 2-3 references.* Review of applications will begin immediately and continue until the position is filled. Prospective applicants may email Dr. Bayet ( bayet(a)american.edu) with any questions. Apologies for cross-posting! *Essential Functions* - *Data Management:* Assisting with data collection in adherence with study protocols, such as: informed consent, EEG, fNIRS, and/or eye-tracking measurements, transferring research data files to the lab server. - *Participant Recruitment and Support:* Outreach, recruitment, and communication with families who participate in the research, such as: designing and implementing outreach/recruitment materials, assessing study eligibility, scheduling study visits, maintaining contact with participating families. - *Data Entry and Processing:* Conduct data entry, data pre-processing, video coding, and data management, in adherence with study protocols. - *Personnel:* Onboarding and supervision of undergraduate research assistants. - *Study General Support:* Assisting with designing and implementing experimental procedures, such as: creating and validating stimuli, surveys, and/or paradigms; monitoring materials and supplies. - *Compliance:* Develop and monitor IRB protocols for approval, modification, or renewal. - *Other duties as assigned by supervisor.* Opportunity to contribute to conference presentations and/or manuscript writing, if desired. Position Type/Expected Hours of Work: The initial position is for 1-year and is renewable contingent upon continued funding, a 6-month probationary period, and successful completion of duties. *Required Education and Experience:* - High school diploma or equivalent required. - 1-3 years' relevant experience, such as undergraduate research experience, is required. - Demonstrated interest in developmental psychology, cognitive science, and/or cognitive neuroscience required, such as from undergraduate coursework or research experience. - Excellent organizational and project management skills are required, including initiative, self-motivation, rigor, attention to details, ability to work independently on multiple tasks, ability to learn new skills in a fast-paced environment, and ability to meet deadlines. - Excellent communication and interpersonal skills are required, including comfort interacting professionally with families, infants, and undergraduate students, and ability to work effectively with people from diverse backgrounds. - Prior experience in developmental research (e.g., with infants/children) and/or human neuroimaging research (e.g., EEG, MEG, fNIRS) which may include undergraduate research experience (strongly preferred, but not strictly required if has some other relevant research experience). - Flexibility to adapt to changing hours, such as the ability to run study visits with families during weekends, or occasionally during the evening, is required. *Preferred Education and Experience:* - Bachelor's degree in Psychology or Neuroscience or closely related field preferred. - Computational skills and programming experience in Matlab, R, and/or Python preferred, but not strictly required. - Relevant experience with neuroscience/psychology research tools (e.g., NetStation, Psychtoolbox, Datavyu, Children Helping Science, EEGLAB, Homer, BIDS), data analysis, data processing, manuscript preparation, and/or social media or community outreach a plus. - The ability to start in or before January 2025 and the intention to make a 2-years commitment is strongly preferred. *Additional information:* The Developmental Cognitive Neuroscience Laboratory is part of the Neuroscience Department <https://www.american.edu/cas/neuroscience/> and the Center for Neuroscience and Behavior <https://www.american.edu/cas/center-neuroscience/> at American University. American University provides a stimulating intellectual environment, just 2 miles from downtown Washington DC. DC offers a vibrant research community, and American University enjoys proximity to other notable research institutions such as the National Institutes of Health. With extensive public transit, an exciting cultural and restaurant scene, many museums and public parks, and proximity to other green spaces in the surrounding region (e.g., Appalachian trail, Shenandoah National Park), Washington DC consistently ranks amongst the top US metropolitan areas for quality of life. *Benefits* AU offers a competitive benefits package including a 200% matching retirement plan, tuition benefits for full-time staff and their families, several leadership development certificates, and has been recognized by the American Heart Association as a fit-friendly worksite. Click here to learn about American University's unique benefit options <https://secure-web.cisco.com/1xOwxDSlkRlXlYPPZYWq0QpcjQRmrUewLamlS2mE8G0X9U…> . *Other Details* - Hiring offers for this position are contingent on successful completion of a background check. - Employees in staff positions at American University must deliver their services to the university from either the District of Columbia, Maryland, or Virginia, or perform work on-site at the university. - Please note this job announcement is not designed to cover or contain a comprehensive listing of activities, duties or responsibilities that are required of the employee for this job. Duties, responsibilities, and activities may change at any time with or without notice. - American University is an E-Verify <https://secure-web.cisco.com/1XvV9ls4UAniSQMlhDR3Q7UDPXIx7GKNSsIF67po-xqKDS…> employer *Contact Us* For more information or assistance with the American University careers site, email theworkline(a)american.edu. *American University is an equal opportunity, affirmative action institution that operates in compliance with applicable laws and regulations. The university does not discriminate on the basis of race, color, national origin, religion, sex (including pregnancy), age, sexual orientation, disability, marital status, personal appearance, gender identity and expression, family responsibilities, political affiliation, source of income, veteran status, an individual’s genetic information or any other bases under federal or local laws (collectively "Protected Bases") in its programs and activities.*

Sept. 12, 2024

Link updated: UK PhD studentship opportunity

by Goodfellow, Marc

The University of Exeter, UK, is offering an EPSRC-funded PhD studentship in Neuroscience and Artificial Intelligence. This project is open to students with a background in Mathematics, Physics, Computer Sciences, or Natural Sciences, and an interest in Neuroscience. The successful candidate will use recent Neuroscience findings to make Deep Networks learn more sustainably, generalise better, be more resistant to injuries, and be more explainable. For information on the studentship and how to apply, please visit https://www.exeter.ac.uk/study/funding/award/?id=5228. The application deadline is midday on Friday 4th October 2024. For more information on this project see https://www.exeter.ac.uk/v8media/recruitmentsites/documents/Improving_Artif…

Sept. 12, 2024