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Post doc in Cognitive-Computational Modelling at UCL (Dominik Bach) in collaboration with MPI Tübingen (Peter Dayan) - 1 week left to apply

by Dominik R. Bach

*Post doc in Cognitive-Computational Modelling at University College London: discrete and continuous human action control under threat* We are looking for a research fellow in an ERC-funded research project "Action selection under threat - the complex control of human defence" led by Dominik Bach (http://bachlab.org <https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fbachlab.or…>) at University College London in collaboration with Peter Dayan, Max-Planck-Institute for Biological Cybernetics in Tübingen (https://www.kyb.tuebingen.mpg.de/de/computational-neuroscience <https://www.kyb.tuebingen.mpg.de/de/computational-neuroscience>). The position will be based at Max-Planck UCL Centre for Computational Psychiatry (https://www.mps-ucl-centre.mpg.de/en <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.mps-u…>) and Wellcome Centre for Human Neuroimaging (http://www.fil.ion.ucl.ac.uk/ <http://www.fil.ion.ucl.ac.uk/>). The overarching goal of the project is to understand the cognitive-computational control of human action selection under acute, immediate threat. We investigate this in an immersive virtual reality (VR) environment, in which people can move to avoid a large number of different threats. As part of this project, the candidate will build explicit computational models of discrete and continuous action control and action updating under constraints of time pressure and unaffordable costs. These will be tested by the experimentalists in our interdisciplinary team, composed of VR experts, psychologists, and movement scientists. There is a possibility to get involved in the experimental work, including behavioural experiments, motion capture and OPM-MEG. Within the topical focus, the project offers unique freedom to explore and develop novel directions and formalisms at the interface of classical discrete-space decision models and continous action control. We seek applicants with established cognitive-computational modelling skills and a PhD in computational neuroscience, robotics with focus on action planning, computer science/mathematics/physics with a focus on decision science, or in a related area. We are looking for an individual who is strongly motivated to pursue an academic career and is excited by the opportunities for personal and career development this position can provide. The post is available from October 2021 and funded for up to 3 years with initial appointment for 1 year. Starting salary is on UCL grade 7, ranging from £36,028 to £43,533 per annum, inclusive of London Allowance, superannuable. More information and access to the UCL online application portal: https://is.gd/VwTJCA <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fis.gd%2FV…> Please contact d.bach(a)ucl.ac.uk <mailto:d.bach@ucl.ac.uk> for any queries about the project or role. *Closing date: 16 July 2021* Interviews will be held remotely in July. Apologies for cross-posting. -- ----------------------- Dominik R Bach MBBS PhD Principal Research Fellow Max Planck UCL Centre for Computational Psychiatry and Ageing Research Wellcome Centre for Human Neuroimaging, University College London http://bachlab.org | @bachlab_cog

July 9, 2021

Postdoctoral positions: modeling, imaging, and optogenetics (Boston U School of Medicine)

by Christina M. Weaver

Postdoctoral positions in modeling, imaging, and optogenetics (Boston University School of Medicine) The Luebke & Medalla labs (Dept. of Anatomy & Neurobiology, Boston University School of Medicine) use state-of-the-art approaches in imaging, immunohistochemistry, electrophysiology, and computational modeling to explore neural mechanisms underlying executive function in the mammalian prefrontal cortex. We seek highly motivated, detail-oriented postdoctoral research fellows to join our interdisciplinary team related to several exciting, federally funded projects. Read more about our research here <https://www.bumc.bu.edu/anatneuro/research/cellular-neurobiology/>. Modeling: This project, led jointly by Dr. Jennifer Luebke, Dr. Christina Weaver (Dept of Mathematics, Franklin & Marshall College, Lancaster, PA), and Dr. Patrick Hof (Dept of Neuroscience, Icahn School of Medicine at Mount Sinai, New York NY), aims to characterize changes in the prefrontal cortex and visual cortex during normal aging in the rhesus monkeys. We seek candidates with experience building differential equations-based mathematical models using MATLAB, Python, and/or NEURON compartmental modeling software. Experience with conductance-based modeling of single neurons or excitatory-inhibitory networks preferred. The successful candidate will build computational models to explore mechanisms of network dysfunction, constrained by our data from aging studies in rhesus monkeys, including new multiplexing data in collaboration with GE Healthcare. Imaging: This project, led by Dr. Luebke and Dr Klaus Wimmer (Centre de Recerca Matemàtica, Barcelona, Spain) and funded by the Collaborative Research in Computational Neuroscience (CRCNS) program, focuses on the computational and neural mechanisms underlying working memory and age-related changes to working memory and other executive function in the rhesus monkey. We seek candidates with an excellent track record using magnetic resonance imaging and image processing techniques to explore scientific questions with high health relevance. The successful candidate will lead analyses of structural MRI (T1 TFE scans), resting state fMRI, and diffusion spectrum imaging (DSI) brain scans to assess brain morphometry and connectivity. Data generated from brain scans will be correlated with behavioral, physiological and other anatomical data collected across the adult life span to inform sophisticated computational models. The project includes unique cross-national training opportunities for researchers in Boston and Barcelona alike. Optogenetics: One project, newly funded by NIH, uses multi-scale neuroanatomical, in vitro, and in vivo electrophysiological, pharmacologic and optogenetic techniques to study inhibitory circuits in the anterior cingulate cortex and lateral prefrontal cortex (ACC and LPFC) of rhesus monkeys, and how limbic input from the amygdala influences communication within the ACC-LPFC network. We seek candidates with expertise in optogenetics, imaging of voltage-sensitive dyes, patch-clamp recording and multiphoton microscopy. The successful candidate will combine anatomical and viral tracing with in vivo electrophysiological recordings in anesthetized preparations, as well as optogenetic stimulation and whole cell patch-clamp recording in in vitro slices, to investigate the cellular and synaptic properties of prefrontal circuits involved in cognitive and emotional control and integration. Each appointment as a Boston University School of Medicine research fellow will be for at least 1 year with the possibility for extension based on performance. Competitive salary based on experience. Interested applicants should attach the following: - A cover letter, - A current CV, - A brief statement of current and future research interests, - The contact information of three references. Please be aware that references may be contacted anytime after receipt of your application. Contact: Dr. Christina Weaver, christina.weaver(a)fandm.edu or Dr. Jennifer Luebke, jluebke(a)bu.edu Christina M. Weaver, Ph.D. Associate Chair of Mathematics Associate Professor Franklin & Marshall College P.O. Box 3003 Lancaster, PA 17604-3003 Email: christina.weaver(a)fandm.edu

July 8, 2021

Call for Visiting Scholars in Theoretical Sciences at OIST (Application by August 15)

by Kenji Doya

We are pleased to announce Visiting Scholars in Theoretical Sciences at OIST for a flexible term of 1 to 12 months as below. ***** As part of an initiative to develop a vibrant program in theoretical sciences, OIST invites applications for Visiting Scholars in the Theoretical Sciences. The Okinawa Institute of Science and Technology (OIST) is a research institution with a Ph.D. program. Outstanding graduate students and faculty are being attracted internationally. OIST is beautifully situated on the tropical island of Okinawa, Japan. Applicants should have a Ph.D. in a relevant field and be independent researchers, i.e., should have an academic standing equivalent to senior postdoc, junior group leader, or faculty member at a research-intensive institution. The position has a flexible term of 1 to 12 months taken continuously starting between October 2021 and March 2022 with a preference for longer-term visitors. The appointment may be taken while on leave or sabbatical from another university and comes with housing, research funds, and moving allowance. Successful candidates will be eligible to apply for support with salary, where this is necessary to facilitate the visit. No teaching duties come with the position. OIST is an institution with no departments, aiming to eliminate barriers between people working in different fields. It provides a family-friendly working environment including the multilingual Child Development Center and has proactive policies designed to promote a culture of diversity. OIST is an equal opportunity, affirmative action educator, and employer. Further details can be found at https://www.oist.jp/. Applicants should submit a CV including a list of publications, a brief description of their research to date and proposed research while visiting OIST, and the desired period of visit. All visits are subject to the availability of funding. Applications received by August 15, 2021, are guaranteed full consideration. If you have any questions, please send inquiries to: tsvp(a)oist.jp To apply, please go to our Interfolio page, http://apply.interfolio.com/88541 ---- Kenji Doya <doya(a)oist.jp> Neural Computation Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna, Okinawa 904-0495, Japan Phone: +81-98-966-8594; Fax: +81-98-966-2891 https://groups.oist.jp/ncu

July 8, 2021

Announcing free online spiking neural network workshop Nov 8-9, reg & submissions open

by Goodman, Daniel F M

We are delighted to announce the second edition of the "SNUFA" spiking neural network online workshop, taking place this November 8-9. Free registration and abstract submission is now open at http://snufa.net/2021 This online workshop brings together researchers in the field to present their work and discuss ways of translating these findings into a better understanding of neural circuits. Topics include artificial and biologically plausible learning algorithms and the dissection of trained spiking circuits toward understanding neural processing. We have a manageable number of talks with ample time for discussions. This year’s executive committee comprises Chiara Bartolozzi<https://www.iit.it/people/chiara-bartolozzi>, Sander Bohté<https://homepages.cwi.nl/~sbohte/>, Dan Goodman<https://neural-reckoning.org/>, and Friedemann Zenke<https://fzenke.net/>. The workshop will take place 8-9 November, 2021. Abstract submission will close 1 October, 2021. The workshop will feature invited speakers: * Tara Hamilton<https://profiles.uts.edu.au/Tara.Hamilton>, University of Technology Sydney * Dylan Muir<http://dylan-muir.com/>, SynSense<https://www.synsense-neuromorphic.com/> * Katie Schumann<https://www.ornl.gov/staff-profile/catherine-d-schuman>, Oak Ridge National Laboratory * Henning Sprekeler<https://www.sprekelerlab.org/henning/>, TU Berlin The format will be: * Two half days (European afternoon times) * 4 invited talks * 8 contributed talks * Poster session * Panel debate: “What should be the next big breakthrough in spiking neural networks?” (speakers to be decided) You can see last year’s talks on Crowdcast<https://www.crowdcast.io/e/snufa2020> or the talks and one of the recorded discussions on YouTube<https://www.youtube.com/playlist?list=PL09WqqDbQWHFvM9DFYkM_GfnrVnIdLRhy>. This workshop was great fun last year and we had around 700 participants! This year should be even better with your contributed talks and posters. Looking forward to seeing you all there! And please forward this announcement to any colleagues or local distribution lists. Many thanks, Dan, Chiara, Sander and Friedemann

July 7, 2021

Postdoctoral Researcher position on fMRI study of spontaneous thoughts and natural task

by Mingbo Cai

*Postdoctoral Researcher position on fMRI study of spontaneous thoughts and natural task* We seek a talented neuroscientist with extensive experience in the areas of advanced fMRI analysis, (such as encoding or decoding models) and the design of experiments using naturalistic tasks and assessing spontaneous thoughts. A 2.5-year postdoctoral position is available at Dr. Mingbo Cai’s lab <https://cailab-ircn.org/> at the International Research Center for Neurointelligence <https://ircn.jp/en/>, The University of Tokyo. You will work on an exciting international collaboration project directed by both Dr. Cai <https://ircn.jp/en/mission/people/mingbo-cai> and Dr. Nicolas Schuck <https://schucklab.gitlab.io/> at Max Planck Institute for Human Development. You will also have the opportunity to collaborate remotely with Dr. Quentin Huys <https://quentinhuys.com/> at the University College London. The project will focus on understanding the contents and dynamics of spontaneous thoughts using fMRI decoding and natural tasks. In the later stage of the project, we also plan to examine the clinical implication of differences in spontaneous thoughts. Applicants with experience working on populations with mental disorders are also highly encouraged to apply. The working language is English. The working location is at The University of Tokyo, Japan. Contract duration: renewed annually up until Jan 2024 (future renewal depends on performance and budget), with a probation period of 6 months. Starting date: negotiable Requirements (1) Applicants must hold, or be expected to hold by the time of appointment, a PhD, M.D. or equivalent degree in Neuroscience, Psychology, Psychiatry, Machine Learning, Statistics or related fields. (2) Experience in conducting fMRI experiments and data analysis (evidenced by publications, conference presentations or writing samples). (3) Familiar with at least one of the following tools: AFNI, FSL, nilearn, BrainIAK. (4) Good speaking and scientific writing skills in English. (5) Good programming skills. (6) Willing to collaborate and help colleagues. Requirements 2 and 3 may be replaced by two or three of the preferred skills below: Preferred skills: (1) Research experience with fMRI experiments involving natural tasks and multivariate pattern analysis. (2) Experience with experiments investigating spontaneous thoughts. (3) Research experience with investigations of psychiatric disorders. (4) Knowledge of and experience with deep learning. Application procedure: Please send an email with the title “[Postdoc Application] + your name” to mingbo[doc]cai[at]ircn[dot]jp. Please include a cover letter describing your background and research interest, a curriculum vitae, and contact information for 2-3 recommendation letters (ideally you can also request your referees to send their letters directly to the above email address). To increase the chance of being considered, we suggest you include writing samples or a copy of a poster or other presentation. Informal inquiry can also be sent to Dr. Cai. Application deadline: The application deadline is July 31. The position will remain open until filled. Review of applications starts as soon as they are received. Mingbo Cai Assistant Professor International Research Center for Neurointelligence The University of Tokyo https://cailab-ircn.org/

July 7, 2021

PhD and Postdoc opportunities in Germany

by Tatjana Tchumatchenko

Dear friends and colleagues, I would appreciate if you could spread the word among your students and postdocs. My group which is now at the University of Bonn is looking for Master Students, PhD Students and Postdocs PhD Students or Postdocs interested in understanding how neuronal networks work, how they respond to stimuli and what role connectivity and single neuron dynamics play for the activity of the brain. Though the focus of my research is on the theory side, my lab has close ties to experimentally oriented labs and projects typically involve modelling and data analysis. We are looking for bright and hard-working students with a life-science or quantitative background (physics, math, biology etc). The following PhD and Postdoc positions are currently open: 1) A PhD position in a project exploring the intersection of protein dynamics and machine learning. This involves analyzing the collective motion of multiple receptors in a cell. 2) A PhD position in project designing models describing protein dynamics in dendrites and analyzing imaging data 3) A postdoc or PhD position in a project addressing the relation between neurological diseases, protein dynamics and network activity. When applying please attach a CV (with a publication record) and a current copy of academic transcripts and mention at least one academic reference. For more information, please contact Prof. Tatjana Tchumatchenko via email tatjana.tchumatchenko(a)uni-bonn.de https://twitter.com/TTchumatchenko www.tchumatchenko.de

July 6, 2021

Call for applications at the paris Brain Institute

by Jean Daunizeau

Dear colleagues, This is to let you know that the Paris Brain Institute is seeking to recruit a team leader at the starting, junior or mid-career level, working in computational and/or theoretical neuroscience. Please visit this page for more info: https://institutducerveau-icm.org/en/actualite/call-for-applications/ Best regards, Jean Daunizeau. -- Jean Daunizeau Motivation, Brain and Behaviour group (ICM) web: http://sites.google.com/site/jeandaunizeauswebsite/

July 5, 2021

PhD/Postdoc Positions at the Interface of Neuroscience and Machine Learning

by Jian Liu

*PhD/Postdoc Positions at the Interface of Neuroscience and Machine Learning* The lab of Dr Jian Liu invites applications for several PhD/Postdoc positions at the interface of computational neuroscience and machine learning, at the School of Computing, Faculty of Engineering and Physical Sciences, University of Leeds. Research projects will involve theoretical analysis, computational modeling, and data analysis, with worldwide collaborations of neuroscience experimentalists, clinicians, and robotic engineers. We are working on a wide range of topics, from fundamental neuroscience questions to robotic applications. For representative examples and publications, please visit: http://jiankliu.github.io Candidates with a quantitative background are welcome. We are looking for highly motivated candidates with a spirit of intellectual adventure. The positions will come with competitive work conditions. Generous traveling budgets are available. Please send the following information in one single PDF, to j.liu9(a)leeds.ac.uk: - Detailed CV with publications; - Letter on motivation and interests; - Other relevant materials of interest; The School of Computing conducts ranging from fundamental advances in algorithms and our understanding of computation, through to highly applied research into new display technologies for clinical diagnosis, energy-efficient data centres, and profound insight into data through visualisation. We are parents with the Alan Turing Institute, the UK’s premier research centre for data science and artificial intelligence. The University of Leeds is committed to providing equal opportunities for all and offers a range of family friendly policies. The University is a charter member of Athena SWAN and holds the Bronze award. The School of Medicine holds the Gold award. We are committed to being an inclusive medical school that values all staff, and we are happy to consider job share applications and requests for flexible working arrangements from our employees. We will make the working patten inclusive and flexible. If female candidates are selected, the maternity leave will be fully guaranteed and the children care responsibilities will be satisfied (e.g. working in part time). We will also actively promote gender equality in education and employment opportunities through workshops, seminars, webinars, and university open days.

July 5, 2021

Job Posting: Scientific Software Developer

by Dr. David Goyer

Dear All, The Institute of Neuroscience and Medicine - Computational and Systems Neuroscience (INM-6) at Research Center Jülich is looking for a Scientific Software Developer for Neural Data Analysis Tools. Full details of the job offer can be found here: https://www.fz-juelich.de/SharedDocs/Stellenangebote/_common/dna/2021-192-E… Application deadline is 25.07.2021. If you have questions regarding this job posting feel free to contact me. Kind regards, David Goyer Dr. David Goyer Scientific Coordinator Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience Jülich Research Centre and JARA Jülich Germany phone: +49-1756402993

July 5, 2021

PhD student in data science of Parkinson's electrophys data (MEG, DBS, etc) in Dusseldorf

by Dmitrii Todorov

Project Title: Improving deep brain stimulation through artificial intelligence We are looking for a PhD student to join our research project Improving deep brain stimulation through artificial intelligence. In this project, you will collect data from patients using simultaneous MEG and intracranial recordings. In addition, we will obtain kinematic data and anatomical images of the brain using MRI. Besides neuroscientific measurements, data science plays an important role. The project involves the creation of a scientific database and sophisticated data analysis, using dedicated software tools for MEG/MRI and the implementation and application of machine learning algorithms. The doctoral researcher will conduct neuroscientific experiments, analyze and present the data, and prepare publications under supervision, resulting in a PhD thesis. Requirements Master of Science in the natural sciences, computer science or psychology Intrinsic motivation and a passion for brain research First experience in programming and scientific data analysis (mandatory) First experience in at least two of the following: M/EEG, machine learning/AI, local field potential recordings, motion tracking, MRI, scientific databases The project is supported by a five-year grant of the Brunhilde Moll Foundation to Prof. Alfons Schnitzler and Dr. Jan Hirschmann. We offer fixed-term contracts for three years initially, with the possibility of prolongation. Payment accords to the regulations for the German public sector (Tarifvertrag für den öffentlichen Dienst der Länder). The applications should include a statement of research interests and reasons for applying to the project, a curriculum vitae including a list publications, a certificate of the Master’s degree, a copy of the master’s thesis and grades of Master’s level studies, and the names and e-mail addresses of two referees. Please address questions and send applications (pdf only!) to Jan.Hirschmann(a)med.uni-duesseldorf.de See full details here https://www.uniklinik-duesseldorf.de/en/institute-of-clinical-neuroscience-… -- Best regards, Dmitrii Todorov Postdoc Institute for Clinical Neuroscience and Medical Psychology Dusseldorf University Clinic

July 5, 2021

Deadline extension Call for Papers Special Issue IEEE TCDS

by Bruno Lara

Dear all; The call for papers for our special issue has been extended: New dates: Paper submission deadline - 1 September 2021 Notification to authors - 1 November 2021 Deadline revised papers submission - 15 January 2022 Final version - 15 February 2022 The call can be found in: https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=9448373 We would like to announce a special issue for the journal IEEE Transactions on Cognitive and Developmental Systems. The general topic revolves around perceptual optimization processes related to attentional and predictive mechanisms. We are interested in work coming from a wide range of areas including robotics, psychology, philosophy and neuroscience. Themes include: · Attentional and gating mechanisms for action and sensory information processing · Context- and task-dependent perceptual optimization · Sensory attenuation/cancellation and sensory enhancement/facilitation · Interplay of predictive and attentional mechanisms for prediction error minimization · Multimodal integration and/or cross-modal interactions · State representation learning · Constrained innate priors that drive learning · Prediction in language learning and comprehension · Prediction error dynamics monitoring · Dreaming, non-conscious perception, hallucination, altered perceptual phenomena -- -- +++++++++++++++++++++++++++++++++++++++++++++ Dr. Bruno Lara Guzman Profesor Investigador Centro de Investigación en Ciencias Universidad Autónoma del Estado de Morelos Av. Universidad 1001. Col. Chamilpa Cuernavaca, Morelos. C. P. 62209-- M É X I C O +++++++++++++++++++++++++++++++++++++++++++++ http://roboticacognitiva.mx Tel (52) (777) 3-29-70 40 x 3280 +++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++

July 3, 2021

THEORETICAL/COMPUTATIONAL NEUROSCIENCE FACULTY POSITION AT CSHL

by Tony Zador

*Cold Spring Harbor Laboratory is seeking faculty candidates in the area of Computational/Theoretical Neuroscience. * Of particular interest to this search are candidates with expertise in *computational and theoretical neuroscience, machine learning, and artificial intelligence*. The successful candidate will have an outstanding record of research achievement and an innovative research program. They will join a highly interactive and collaborative neuroscience group working on neural circuits, neural development, neurogenetics, theoretical and computational neuroscience, artificial intelligence, synaptic function, brain disorders, rodent cognition, perception, and social behavior. Preference will be given to applicants at the Assistant Professor level, but outstanding candidates at all career stages will be considered. *Review of applications is currently underway and will continue until the position is filled. * Please see https://www.cshl.edu/about-us/careers/faculty-positions/ for details. If this position is *of interest to you or your colleagues, we would welcome your applications*. This link will bring you to the formal posting where *interested candidates* can create an account and apply: Faculty Positions In Neuroscience position ID 02703-R. *Specific questions regarding the opportunity can be sent *directly to CSHLfacultyjobs(a)cshl.edu .

July 2, 2021

EITN Fall School in Computational Neuroscience : Applications extended to 25 July 2021

by Zélie Tournoud

Dear colleagues, We are happy to let you know that the application deadline for the *EITN Fall School in Computational Neuroscience* has been extended to the *25th of July 2021*. This *10-days intensive course in computational neuroscience* will take place in *P**aris, France from 15 to 24 September 2021*. This is a yearly event, although previous occurrences took place in the spring. We choose to keep it relatively small-scale in order to facilitate interactions between participants and teaching staff, there are about 20 seats available. There will, therefore, be a selection made after applications are closed. We encourage you to share the word widely with your collaborators and networks so that everyone who might be interested can get the chance to apply. Applications need to be addressed by email with a *resume (CV)* and a *cover letter* at *eitn(a)neuro-psi.fr*. Please make sure to use an explicit email title such as "Application to EITN Fall School". *Organizers: *Sacha Van Albada (Julich), Albert Gidon (U Berlin), Alain Destexhe (CNRS), Gorka Zamora-Lopez (UPF) and Spase Petkowski (AMU) *Faculty:* Nicolas Brunel (Duke University) Mallory Carlu (CNRS) Hermann Cuntz (Max Planck Frankfurt) Damien Depannemaecker (CNRS) Alain Destexhe (CNRS) Michael Dick (Julich) Renato Duarte (Julich) Gaute Einevoll (MBU) Kirsten Fisher (Julich) Albert Gidon (U Berlin) Jennifer Goldman (CNRS) Moritz Helias (Julich) Christian Keup (Julich) Anno Kurth (Julich) Mario Lavanga (AMU) Jean-Didier Lemarechal (AMU) Marja-Leena Linne (U Tempere) Jorge Mejias (UVA) Spase Petkowski (AMU) Marcel Stimberg (Institut de la Vision) Bartosz Telenczuk (CNRS) Fererico Tesler (CNRS) Nuria Tort-Colet (CNRS) Sacha Van Albada (Julich) Gorka Zamora-Lopez (UPF) *Why join?* * 10 days of intensive training in computational neuroscience provided by researchers from all over Europe * Small scale event: get to connect! * A complete program: o Cellular models, and models of brain signals Circuit models and networks o Mean-field models o Whole-brain models * Hands-on learning schedule based on: o Morning classes and tutorials o Group projects in the afternoon o Free time in the evenings to visit Paris *Selection criteria:* 1. Work or study in neuroscience or related 2. Experience in python programming would help 3. Priority to PhD students, although Master students and post-docs are welcome to apply *Practical information:* * Subscription fee 400€. * If selected, you will need to bring your own laptop with a few pre-installed programs. * The tuition fee includes lunch, coffee, access to conference facilities and internet connection during the 10 days of the course. You can also consult these information online <https://www.eitn.org/index.php/calendar-event/eventdetail/737/-/eitn-fall-s…> or by downloading the PDF flyer: https://www.eitn.org/images/events/EITN-FallSchool-2021_Flyer.pdf Thank you very much for applying or sharing with your relevant contacts. Kind regards, The EITN Team

July 2, 2021

Scientific Software Engineer or Data Scientist, deadline July 11th 2021, Salary level E13 TVL

by Jochem Rieger

Dear colleagues, we have an open DFG-funded position for 3+2 years for the development of data infrastructure including storage, streaming and analysis tools for reproducible science based on the BIDS standard at our Neuroimaging Unit at University of Oldenburg, Germany. Link to the announcment: https://uol.de/stellen?stelle=68111 Application deadline is July 11th 2021 The position is ideal for networking in the open science community as it includes workshop organization and interaction with the open (neuro)science community. It is complemented by a full time technician position for support. The salary level is E13. The exact salary is dependent on experience and family status. But the rough numbers are on the web. The Neuroimaging Unit hosts a 3T Siemens Prisma MRI-scanner and a 306 channel Triux MEG system. The university hosts a prestigious DFG-funded Cluster of Excellence in Hearing Research and the Dept. of Psychology was recently evaluated as excellent with the highest third party funding rate among psychologies in Lower Saxony. The city of Oldenburg has a high standard of living, Hamburg, Bremen and the north sea are between 30 to 90 min distance. We are looking forward to your application! Best regards, Jochem The Neuroimaging Unit and the Applied Cognitive Neuropsychology Lab at the School of Medicine and Health Sciences of the University of Oldenburg is seeking to fill the position of a *Scientific Software Engineer or Data Scientist (m/f/d)* *(Salary level E13 TVL, 100%)* ** for the development of open and reproducible neuroscience tools and processing pipelines*.* The position is embedded in a DFG Core Facility grant and is available*as soon as possible**until 30^th of September 2023 (with the possibility to extend another 2,5 years after successful evaluation and extension of the project)*. The position is suitable for part-time work. The Neuroimaging Unit hosts a state-of-the-art MEG (Elekta Triux) and an MRI (Siemens Prisma 3T) and is embedded in an excellent interdisciplinary scientific environment with a strong research focus on neurosensory, neurocognitive, and medical research. The successful candidate is expected to actively perform research on and contribute to the implementation of a standardized neuroscience data acquisition, reproducible analysis pipelines and data storage for open science building on the BIDS standard. He/she should further contribute to community efforts and dissemination. Candidates should have a strong motivation to contribute to the community of developers open science tools. The development can include scientific projects, as long as they fit into the research focus of the lab (machine learning in cognitive neuroscience, speech processeing, and human state monitoring) but tool and processing pipeline development comprises the main part of the position. Candidates are expected to have an academic university degree (Master or equivalent) in the field of informatics, engineering, neuroscience or psychology and have shown their ability to perform excellent scientific work, demonstrated by an excellent publication record. Prior experience with the BIDS standard as well as its programming, experience with neuroimaging techniques and data analysis (especially fMRI or MEG/EEG) and fluency in English is required. Experience with open science tools and databases, other neurophysiological modalities, as well as knowledge of German are desirable. The University of Oldenburg is dedicated to increase the percentage of female employees in the field of science. Therefore, female candidates are strongly encouraged to apply. In accordance to § 21 Section 3 NHG, female candidates with equal qualifications will be preferentially considered. Applicants with disabilities will be given preference in case of equal qualification. Please send your application including a cover letter, CV, list of potential referees, links to recent publications and copies of certificates for academic grades to Prof. Dr. Jochem Rieger, Department of Psychology, University of Oldenburg, 26111 Oldenburg, Germany; (jochem.rieger(a)uni-oldenburg.de <mailto:jochem.rieger@uni-oldenburg.de>). Electronic applications (one pdf file) are preferred. For inquiries please use the same contact. The application deadline is*11*th of July 2021**. -- Prof. Dr. rer. nat. Jochem Rieger Head of Applied Neurocognitive Psychology Faculty VI Carl-von-Ossietzky University 26111 Oldenburg Germany Phone: +49(0)4417984533 Fax: +49(0)4417983865

July 2, 2021

NERKA8 Summer Course “Ion Channels and Neuronal Excitability”

by luiza filipis

Dear all, It is our pleasure to invite you to the NERKA8 Summer Course *“Ion Channels and Neuronal Excitability” *to be held *this year and in person* *September 8-12, 2021 *in Kotor, Montenegro. The course is organized by the *Faculty of Biology University of Belgrade* within the *NENS* School PhD program on *Neurobiology*. This school is to cover topics of *Ion Channels and Neuronal Excitability – techniques, modeling, physiology & pathology*. Information on application, deadlines, stipends and programm can be found on the website http://clm.bio.bg.ac.rs/neurobiology-course-2021/ -- Luiza Filipis,PhD Equipe OPTIMA Laboratoire Interdisciplinaire de Physique (LIPhy), Université Grenoble Alpes et CNRS UMR 5588, Bat. E45, 140 avenue de la physique, Domaine univ., 38402 St Martin d'Hères cedex, FRANCE 33(0)476514731, Fax +33(0)476635495. luiza.filipis(a)univ-grenoble-alpes.fr http://marco-canepari.wix.com/neuron-imaging-team

July 1, 2021

Modellers Workshop for the Brain Dynamics Toolbox

by Stewart Heitmann

Modeller’s Workshop for the Brain Dynamics Toolbox Online Course. Enrolments open 1-18 July 2021. This is a self-paced online course for researchers and students who wish to program their own dynamical models using the Brain Dynamics Toolbox (bdtoolbox.org<https://bdtoolbox.org/>). Participants learn the art of programming differential equations to simulate neuronal dynamics. Topics include programming Ordinary Differential Equations, Partial Differential Equations, Delay Differential Equations, Stochastic Differential Equations, Auxiliary Plot Functions and command-line tools. Example code is provided in all cases. Study time is 8 hours. Course Website https://bdtoolbox.org/p/modellers-workshop/ Important Dates Early-bird enrolments ($125) close Friday 9th July, 2021. Late enrolments ($150) close Sunday 18th July, 2021. Stewart Heitmann | Computational Scientist Victor Chang Cardiac Research Institute | Lowy Packer Building | 405 Liverpool St, Darlinghurst NSW 2010 Australia E: s.heitmann(a)victorchang.edu.au<mailto:s.heitmann@victorchang.edu.au> | @VictorChangInst Disclaimer The information contained in this communication from the sender is confidential. It is intended solely for use by the recipient and others authorized to receive it. If you are not the recipient, you are hereby notified that any disclosure, copying, distribution or taking action in relation of the contents of this information is strictly prohibited and may be unlawful. This email has been scanned for viruses and malware, and may have been automatically archived by Mimecast Ltd, an innovator in Software as a Service (SaaS) for business. Providing a safer and more useful place for your human generated data. Specializing in; Security, archiving and compliance. To find out more visit the Mimecast website.

July 1, 2021

Tutorials on Allen Institute data and tools for computational neuroscience at CNS*2021

by Anton Arkhipov

Starting soon: pre-CNS*2021 tutorials “From synapses to behavior – using open data, tools, and models from the Allen Institute in computational neuroscience”. Please register for CNS*2021 (https://www.cnsorg.org/cns-2021-quick) and find the Zoom link on the conference Sched page. Wednesday, June 30, 2021 11:30 am – 11:45 am ET (8:30 am – 8:45 am PT) - Introduction 11:45 am – 12:45 pm ET (8:45 am – 9:45 am PT) - Synaptic Physiology (Luke Campagnola) 12:45 pm – 1:00 pm ET (9:45 am – 10:00 am PT) - Break 1:00 pm – 2:00 pm ET (10:00 am – 11:00 am PT) - Visual Coding 2-photon (Saskia de Vries) 2:00 pm – 3:00 pm ET (11:00 am – 12:00 pm PT) - Visual Coding Neuropixels (Josh Siegle) Thursday, July 1, 2021 11:30 am – 11:45 am ET (8:30 am – 8:45 am PT) - Introduction 11:45 am – 12:45 pm ET (8:45 am – 9:45 am PT) - PatchSeq (Nathan Gouwens) 12:45 pm – 1:00 pm ET (9:45 am – 10:00 am PT) - Break 1:00 pm – 2:00 pm ET (10:00 am – 11:00 am PT) - Visual Behavior (Alex Piet) 2:00 pm – 3:00 pm ET (11:00 am – 12:00 pm PT) - Bio-realistic model of the mouse primary visual cortex (Anton Arkhipov and Kael Dai) Anton Arkhipov Associate Investigator T: 206.548.8414 E: antona(a)alleninstitute.org<mailto:antona@alleninstitute.org> [Text Description automatically generated] alleninstitute.org<https://alleninstitute.org> brain-map.org

June 30, 2021

Last chance to register: TEX2021 - Bringing together Predictive Processes and Statistical Learning

by Yamil Vidal

Last chance to register!! TEX2021 - Bringing together Predictive Processes and Statistical Learning A free online symposium organized by Yamil Vidal and Davide Crepaldi. We have few available spots left so do not wait until the last minute to register. Description: While the research communities studying Predictive Processes and Statistical Learning sprout from different traditions, they share a core interest in how our brains pick up on patterns in the environment. In this two-days symposium we will bring these communities closer by sharing talks by some of the leading researchers of these fields. When: 1st and 2nd of July (15:00 to 18:30, CET) Speakers: - Tristan Bekinschtein (Consciousness and Cognition Lab, Department of Psychology, University of Cambridge) - Lucia Melloni (Department of Neuroscience, Max Planck Institute for Empirical Aesthetics. Department of neurology, NYU Grossman School of Medicine) - Padraic Monaghan (Department of Psychology, Lancaster University) - Maria Chait (Ear Institute, University College London) - Floris de Lange (Donders Institute for Brain, Cognition, and Behaviour, Radboud University, Nijmegen) - Caspar Schwiedrzik (Neural Circuits and Cognition Lab, European Neuroscience Institute Goettingen. Perception and Plasticity Group, German Primate Center - Leibniz Institute for Primate Research) - Lori Holt (Department of Psychology, Carnegie Mellon University) - Nicola Molinaro (BCBL, Basque Center on Cognition, Brain and Language) Schedule and more info at the registration form: https://sissa-it.zoom.us/webinar/register/WN_nBOv5NWZQ36HSH7nyffazg We would be very happy to count you among the attendees. Please spread the word. Best regards, Yamil and Davide Dr. Yamil Vidal Cognitive Neuroscience Sector Scuola Internazionale Superiore di Studi Avanzati - SISSA via Bonomea, 265 34136 Trieste, ITALY

June 29, 2021

Robustness, Adaptability and Critical Transitions in Living Systems satellite - Conference on Complex Systems 2021 Lyon, France

by Samir Suweis

We are glad to announce the 4th hybrid (on site + virtual) edition of ReACT satellite <https://liphlab.github.io/REACT2021/> during the CCS 2021 <https://ccs2021.univ-lyon1.fr/> in Lyon, France - 25-29/10/2021 Confirmed invited speakers: Anna Levina (University of Tubingen) and Sergi Valverde (CSIC-Universitat Pompeu Fabra) Organizing commettee: Samir Suweis (UNIPD), Giorgio Nicoletti (UNIPD), Sandro Azaele (UNIPD), Jacopo Grilli (ICTP) Abstract submission open through EasyChair <https://easychair.org/account/signin_timeout?l=JRR3vhQlzxctciXkPU1pGc#>. Deadline 31 July 2021 All info are available also on the satellite website: https://liphlab.github.io/REACT2021/ <https://liphlab.github.io/REACT2021/> ***** After the success of the Satellite at ECCS 2014, CCS 2016, and CCS 2018, the ReACT Satellite: Robustness, Adaptability and Critical Transitions in Living Systems is back for a fourth edition at CCS 2021 in Lyon, France. We are very pleased to announce that the Satellite will be host in an hybrid format, welcoming participants both online and in person! The Satellite will last half a day and will take place during the main conference (25th - 29th October, 2021). The exact date and times will be announced soon. Living systems are characterized by the recurrent emergence of patterns: power-laws distributions, long-range correlations and structured self-organization in living matter are the norm, rather than the exception. All these features are also typical of systems poised near a critical point. The great lesson from Physics is that criticality can emerge as a collective behaviour in a many-body system with simple interactions and its characteristics depend only on few details, like the dimensionality or the symmetries. One of the most striking feature of living systems is that they are structured as evolving systems were interactions can turn-on or off, as well as strengthening and weakening, reconfiguring the system connectivity. Thus, by rearranging both the structural and functional topology, living interacting systems may demonstrate unique evolvability, scalability and adaptability properties. Among these systems, the brain is probably one of the most impressively complex and has received a considerable amount of attention in recent years, aided by the vast amount of experimental data available. The idea that the collective behavior of neurons might emerge from a self-organized critical state has been widely studied, from its fundamental mechanisms to its functional advantages, and it poses a fascinating question that is far from being answered. It is of crucial importance to make further steps in the understanding of the main properties that simultaneously confer to these systems high level of adaptability, robustness and optimality. If we can “learn” from evolution and unravel the basic principles then we would be able to both better manage/supervise these systems and also design more optimal and sustainable new systems. ***************** Samir Suweis www.liphlab.com Tel: +39 049 827 71 74

June 29, 2021

[CFP] 2nd call for abstracts (+deadline extended to July 16th): Computational Cognition workshop (COMCO 2021)

by Juliane Schwab

June 29, 2021

[JOBS] PhD @ Italian Institute of Technology, Ferrara

by Alessandro D'Ausilio

PHD PROGRAM in TRANSLATIONAL NEUROSCIENCES AND NEUROTECHNOLOGIES The Center for Translational Neurophysiology of Speech and Communication (CTNSC) @ Italian Institute of Technology (IIT), is opening 3 PhD positions starting in November 1st, 2021. Research areas: - Improving performance and biocompatibility of electrode arrays for brain-computer interfaces - Organic neuroelectronics for multimodal recordings and stimulation of the brain in vivo - Hardware and software development for innovative exploration of brain signals - Machine learning applications to multimodal brain and speech signals - Investigation of sensorimotor functions in animal models - Cortical recordings in human patients during awake Neurosurgery - Human non-invasive neurophysiology of speech and sensorimotor communication Who: chemists, physicists, materials scientists, computer scientists, biomedical/electrical engineers, biologists, biotechnologist, medical doctors and experimental psychologists eager to work in an international and multidisciplinary team. Where: The CTNSC (https://www.iit.it/it/ctnsc-unife <https://www.iit.it/centers/ctnsc-unife>) is hosted by the University of Ferrara (UNIFE) in a prestigious historical building in the city center. Ferrara is a well connected renaissance city (30-min to Bologna, 40-min to Padua, 60-min to Venice; 2 nearby international airports), bustling with students (https://whc.unesco.org/en/list/733 <https://whc.unesco.org/en/list/733>). General INFO: http://www.unife.it/studenti/dottorato/it/corsi/riforma/neuroscience <http://www.unife.it/studenti/dottorato/it/corsi/riforma/neuroscience> Application INFO: http://www.unife.it/studenti/dottorato/concorsi/selection <http://www.unife.it/studenti/dottorato/concorsi/selection> DEADLINE: July 23rd, 2021

June 29, 2021

Tutorial on NEURON and NetPyNE at CNS*2021

by McDougal, Robert

(Apologies for cross-posts.) Interested in learning how to build biophysically detailed neuronal models with NEURON and NetPyNE? Join us for a tutorial at CNS*2021 on Saturday, July 3rd starting at 10am EDT: Time (New York City / EDT) Presenter Subject 10:00 - 10:30 Bill Lytton Overview: implementing the conceptual model 10:30 - 11:50 Robert McDougal NEURON scripting basics 11:50 - 12:00 coffee break 12:00 - 1:00 Adam Newton Reaction-Diffusion 1:00 - 1:30 lunch break 1:30 - 2:50 Salvador Dura-Bernal NetPyNE GUI-based tutorials 2:50 - 3:00 coffee break 3:00 - 4:00 Salvador Dura-Bernal NetPyNE programming tutorial For more information, see: https://neuron.yale.edu/neuron/courses/2021-cns-neuron-netpyne-tutorial Register for CNS*2021 to attend; see https://www.cnsorg.org/cns-2021-registration-fees

June 28, 2021

PhD position with Prof. Laurenz Wiskott at the Institute for Neural Computation, Bochum, Germany

by Laurenz Wiskott

The Ruhr-Universität Bochum is one of the leading research universities. The university draws its strengths from both the diversity and the proximity of scientific and engineering disciplines on a single, coherent campus. This highly dynamic setting enables students and researchers to work across traditional boundaries of academic subjects and faculties. One particular strength of RUB is interdisciplinary research in Machine Learning and Artificial Intelligence, see https://ml-ai.rub.de/. The Institute for Neural Computation is a central research institute, see https://www.ini.rub.de/. It focuses on the dynamics and learning of perception and behavior on a functional level but is otherwise very diverse, ranging from neurophysiology and psychophysics over computational neuroscience to machine learning and technical applications. There is an open position for a research assistant / Phd-student in the group „Theory of Neural Systems“ of Prof. Dr. Laurenz Wiskott to be filled at 15th of September. The appointment will be for three years. Salary is 75% of salary scale TV-L E13. Task: • Develop a cognitive system that learns to behave reasonably in new situations based on few episodic experiences. Central to the system shall be an episodic and a semantic memory. The application domain will be navigation. The candidate is free to put the focus on machine learning techniques or on the modeling of natural cognition. We offer: • An interesting interdisciplinary environment in the field of Machine Learning / Artificial Intelligence / Computational Neuroscience. • Room to develop your own ideas in the project. • Infrastructure to integrate well into the institute and the group. • Opportunity to do a PhD (Dr). Requirements: • Very good Master in mathematics, computer science, engineering, or a related field. • Good programming and mathematical skills. • Interest in interdisciplinary research questions and cooperations. Advantageous: • Experience in Machine Learning and/or Computational Neuroscience. • Good communication and teamwork skills. • Experience in interdisciplinary projects. • Programming skills in Python. Applications (CV, transcript of records for MSc and BSc, statement of purpose) should be sent as a single pdf file to laurenz.wiskott(a)rub.de. Travel expenses for interviews will not be refunded. Ruhr-University Bochum is committed to equal opportunity in employment and gender equality in its working environment. We therefore look forward to applications from qualified women. Applications from appropriately qualified handicapped persons are also encouraged.

June 28, 2021

Bernstein Conference 2021 - Deadline for Contributed Talks extended until July 7

by Anja Dorrn

Each year the Bernstein Network invites the international computational neuroscience community to the annual Bernstein Conference for intensive scientific exchange. It has established itself as one of the most renown conferences worldwide in this field, attracting students, postdocs and PIs from around the world to meet and discuss new scientific discoveries. Due to the ongoing pandemic the Bernstein Conference will be held online. <www.bernstein-conference.de>www.bernstein-conference.de ____ IMPORTANT DATES & NEWS * Bernstein Conference: September 21-23, 2021 * Abstract submission open: * Deadline for submission of abstracts to be considered for Contributed Talks: extended to July 7, 2021, 1 pm CEST * Deadline for abstract submission: August 3, 2021 * Selected Satellite Workshops are now online<https://bit.ly/BC21_workshops> * Registration will open soon and be free of charge ____ ABSTRACTS We invite the computational neuroscience community to submit their abstracts: Submitted abstracts can either be considered as contributed talks or posters. All accepted abstracts will be published online and will be citable via Digital Object Identifiers (DOI). Abstract submission is open. Further information can be found here: https://bit.ly/BC21_abstracts ____ INVITED SPEAKERS Keynote Timothy Behrens (University of Oxford, UK) Invited Talks Athena Akrami (University College London, UK) Nadine Gogolla (Max Planck Institute for Neurobiology, Martinsried, Germany) Guillaume Hennequin (University of Cambridge, UK) Jennifer Li & Drew Robson (Max Planck Institute for Biological Cybernetics, Tübingen, Germany) Scott Lindermann (Stanford University, USA) Ashok Litwin-Kumar (Columbia University, New York City, USA) Ida Momennejad (Microsoft Research, New York City, USA) Cristina Savin (New York University, USA) Marion Silies (Johannes Gutenberg University, Mainz, Germany) Daniela Vallentin (Max Planck Institute for Ornithology, Seewiesen, Germany) ____ CONFERENCE COMMITTEE Christian Leibold (Conference Chair) Julijana Gjiorgjieva (Program Chair) Christian Machens (Program Vice Chair) Marion Silies (Workshop Chair) Moritz Helias (Workshop Vice Chair) & Matthew Botvinick, Megan Carey, Peter Dayan, Brent Doiron, Rainer Friedrich, Ann Hermundstad, Srdjan Ostojic, Nathalie Rochefort, Nicole Rust, Gasper Tkacik ____ For any further questions, please contact: <bernstein.conference(a)fz-juelich.de> bernstein.conference(a)fz-juelich.de -- Dr. Anja Dorrn Scientific Coordinator Bernstein Network Computational Neuroscience | Bernstein Coordination Site (BCOS) Branch Office of the Forschungszentrum Jülich at the University of Freiburg Hansastr. 9A | 79104 Freiburg, Germany phone: (+49) 0761 203 9589 web: www.bernstein-network.de<http://www.bernstein-network.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

June 28, 2021

Program and preliminary schedule for CNS*2021 Online

by Martin Zapotocky

**Organization for Computational Neurosciences 2885 Sanford Ave SW #15359 Grandville, MI 49418 USA*** Program and preliminary schedule available for 30th Annual Computational Neuroscience Meeting (CNS*2021 Online, **July 3-7)***** The program of the CNS*2021 Meeting can now be viewed at https://www.cnsorg.org/cns-2021-calendar <https://www.cnsorg.org/cns-2021-calendar> Please note that this year, the main days of the meeting (*July 3-7*) are preceded by software tutorials on *J**une 28-29*, and satellite tutorials on *June 30 - July 2*. For registration information, please visit https://www.cnsorg.org/cns-2021-registration-fees <https://www.cnsorg.org/cns-2021-registration-fees> Following registration, the attendees can use the conference Sched page to access detailed information for each session and to assemble a personalized schedule. Instructions are sent upon registration. Please follow the Sched page for up-to-date information on the event schedule. -------------------------------------------------------------------------------------------- OCNS is the international member-based society for computational neuroscientists. Become a member to be eligible for awards and other benefits. Visit our website for more information: https://www.cnsorg.org <https://www.cnsorg.org> -------------------------------------------------------------------------------------------- ------------------------------------------------------------------------

June 28, 2021