- Comp-neuro - lists.cnsorg.org

Neuro tool projects with INCF in Google Summer of Code - open to all beginners to open source

by Malin Sandström

Dear all, tell your friends and colleagues - for the first time, the Google Summer of Code <https://summerofcode.withgoogle.com> Program is open to all beginners and newcomers to open source. INCF participates as a mentoring organization for the 12th time. This year, we offer 50 different projects suggested and mentored by tool developers in the neuroscience community. If you are interested in becoming an open source contributor, this program is a fantastic opportunity! Links: INCF Ideas List for 2022 <https://docs.google.com/document/d/131tHl3Ao3aJ_KbfOdZbeDog3sovhHhx_5fobchc…> Google Summer of Code FAQ <https://developers.google.com/open-source/gsoc/faq> Google Summer of Code 2022 timeline <https://developers.google.com/open-source/gsoc/timeline>Recommendations for GSoC contributors <https://www.incf.org/recommendations-gsoc-contributors> Google Summer of Code guides for mentors and students <https://developers.google.com/open-source/gsoc/resources/guide> Read our blog about GSoC 2022 <https://incf.org/blog/incf-applies-gsoc-2022> Best regards, Malin INCF Org Admin for GSoC 2022 -- Malin Sandström, PhD Community Engagement Officer malin.sandstrom(a)incf.org ORCID: 0000-0002-8464-2494 International Neuroinformatics Coordinating Facility Karolinska Institutet Nobels väg 15 A SE-171 77 Stockholm Sweden http://www.incf.org

March 11, 2022

Call for Abstracts: 31st Annual Computational Neuroscience Meeting (CNS*2022) in Melbourne

by Thomas Nowotny

Organization for Computational Neurosciences Call for Abstracts We are inviting abstracts for the 31st Annual Computational Neuroscience Meeting (CNS*2022) - Melbourne, Australia July 16-20, 2022 The main meeting begins the evening of Saturday, July 16 and runs through Tuesday, July 19. It will be preceded by a day of tutorials (Saturday, July 16) and followed by workshops (Tuesday, July 18 mixed with the main meeting and Wednesday, July 19 workshops only). Keynote Speakers Michael Breakspear,<https://www.newcastle.edu.au/profile/michael-breakspear> The University of Newcastle Tara Hamilton, University of Technology Sydney Joseph Lizier<https://www.sydney.edu.au/engineering/about/our-people/academic-staff/josep…>, The University of Sydney Kristin Sellers<https://profiles.ucsf.edu/kristin.sellers>, University of California, San Francisco Registration and abstract submission will open Monday, March 14th. Abstract submission deadline: April 15th, 2022. Note that one of the authors must register as sponsoring author for the main meeting before abstract submission. In case the abstract is not accepted for presentation, the registration fee will be refunded. Submitted abstracts are used for creating the program and for publication. Please follow the formatting guidelines on the submission site. Travel awards are available for student and postdoc members of OCNS. Please apply using the drop-down box on the abstract submission form and note that an extended abstract is required when applying for a travel award or oral presentation format. Registration: https://ocns.memberclicks.net/cns-2022-registration Abstract submission for main meeting: https://cns.confmaster.net/ For up-to-date conference information, please visit: https://www.cnsorg.org/cns-2022 Workshop proposals are being accepted at: https://www.cnsorg.org/cns-2022-call-for-workshops Tutorial proposals are being accepted at: https://www.cnsorg.org/cns-2022-call-for-tutorials Thomas Nowotny, Vice-President OCNS -------------------------------------------------------------------------------------------- OCNS is the international member-based society for computational neuroscientists. Become a member to be eligible for awards and other benefits. Visit our website for more information: http://www.cnsorg.org<http://www.cnsorg.org/> --------------------------------------------------------------------------------------------

March 10, 2022

Call for Satellite Workshop Proposals, Bernstein Conference 2022 in Berlin

by Bernstein Communication

+++ The Bernstein Network Computational Neuroscience invites proposals for Satellite Workshops preceding the Bernstein Conference 2022 in Berlin. +++ ____ BERNSTEIN CONFERENCE Each year the Bernstein Network invites the international computational neuroscience community to the annual Bernstein Conference for intensive scientific exchange. It has established itself as one of the most renown conferences worldwide in this field, attracting students, postdocs and PIs from around the world to meet and discuss new scientific discoveries. www.bernstein-conference.de<http://www.bernstein-conference.de> ____ IMPORTANT DATES - Satellite Workshops: September 13 - 14, 2022 o Tuesday, Sep 13, 14:00 – 18:00 CEST o Wednesday, Sep 14, 8:30 – 12:30 CEST - Main Conference: September 14 – October 16, 2022 - Deadline for Satellite Workshop proposal submission: +++ April 10, 2022 +++ - Notification of workshop acceptance: planned in early May 2022 ____ WORKSHOP PROPOSALS The pre-conference Satellite Workshops addressing controversial issues, open problems, and comparisons of competing approaches are encouraged. The format should be designed to foster extensive discussion and debate, rather than a series of talks. Proposals are welcome for either half-day or full-day workshops. We aim at organizing workshops in Berlin, please ask potential speakers about their availability for the in-person meeting. In addition, there might be a possibility for a few hybrid workshops. Selection criteria for workshop proposals will include scientific excellence, topical relevance and diversity in gender and career level of the selected speakers. Submit your workshop proposal here: https://indico3-jsc.fz-juelich.de/event/9/registrations/2/ +++ Deadline: April 10, 2022– not to be extended +++ ____ FINANCIAL SUPPORT Workshop registration is free for all organizers and speakers of workshops. Workshop organizers will additionally receive a waiver for the main conference fee. From the accepted workshops up to ten workshops will be selected to receive financial support of up to 1500 € each. ____ WORKSHOP SELECTION COMMITTEE Moritz Helias (Workshop Chair) Anna Levina (Workshop Vice Chair) Raoul Memmesheimer (Conference Chair) Christian Machens (Program Chair) Tatjana Tchumachenko (Program Vice Cahir) Megan Carey Brent Doiron Tatjana Engel Christian Leibold Timothy O’Leary Srdjan Ostojic Cristina Savin Mark van Rossum Friedemann Zenke ____ For any further questions, please contact: bernstein.conference(a)fz-juelich.de<mailto:bernstein.conference@fz-juelich.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

March 10, 2022

Postdoc position in plasticity in blindness and handlessness (Washington DC)

by Ella Striem-Amit

*Postdoctoral researcher position in visual and/or motor brain plasticity* The sensory and motor plasticity lab at Georgetown University (PI: Ella Striem-Amit) is looking for a passionate and dedicated postdoctoral researcher to study brain plasticity in congenital visual and/or motor deprivation. The SAMP lab explores the balance between innate brain organization and experience-dependent plasticity by studying people born blind or born without hands using behavioral and fMRI state-of-the-art analytical techniques. Relevant projects include (but are not limited to) exploring individual differences in brain plasticity and action execution without hands. For more details, see https://samp-lab.facultysite.georgetown.edu/people/opportunities. A Ph.D. in a relevant field, experience with fMRI data analysis, and strong programming skills are required. Experience with behavioral methods used in visual, multisensory, or motor control is desirable but not a requirement. The position is not limited to US citizens. The start date is flexible. This position is available for two years and can be extended further based on performance. The lab is located at Washington DC, USA. To apply, please send your CV and a brief statement of research interests by email to Dr. Ella Striem-Amit (Ella.StriemAmit(a)georgetown.edu) with the subject line: “post-doc application”. Georgetown University is an Equal Opportunity/Affirmative Action Employer fully dedicated to achieving a diverse faculty and staff. All qualified applicants are encouraged to apply and receive consideration for employment without regard to race, color, religion, national origin, age, sex, disability status, protected veteran status, or any other characteristic protected by law. -- *Ella Striem-Amit (she/her)* Sensory and Motor Plasticity (SAMP) Lab Edwin H. Richard and Elisabeth Richard Assistant Professor Department of Neuroscience Georgetown University Medical Center 3970 Reservoir Rd., NW Washington, DC 20007 http://samp-lab.facultysite.georgetown.edu/

March 9, 2022

INCF accepted to GSoC 2022!

by Heather Topple

For the 12th time, INCF has been accepted as a mentoring organization for Google Summer of Code! Many core INCF community tools have been improved, extended, and made more interoperable as a result of GSoC (such as LORIS, The Virtual Brain, Open Source Brain, the Brian simulator, the Active Segmentation plugin for ImageJ, and more). For this round, tool developers in the INCF community have proposed 50 possible projects that they would be willing to mentor, from a range of different neuroscience fields. Please spread the word to anyone you feel would be interested! Learn more: bit.ly/INCFGSoC2022blog Talk directly with mentors on Neurostars: bit.ly/GSoC2022Neurostars Full project ideas list: bit.ly/GSoC2022ideas Best regards, /The INCF Secretariat ---------------------------- Heather Topple, BSc *Project Assistant* *Development and Communications* International Neuroinformatics Coordinating Facility Secretariat Karolinska Institutet. Nobels väg 15A, SE-171 77 Stockholm. Sweden <https://www.google.com/maps/search/Nobels+v%C3%A4g+15A,+SE-171+77+Stockholm…> Email: heather(a)incf.org Phone: +46 085 248 70 65 incf.org neuroinformatics.incf.org

March 9, 2022

Postdoc in “InsectNeuroNano” at Edinburgh

by Barbara Webb

A postdoctoral research associate position is available computational and neuromorphic modelling studies of navigation systems in the insect brain, as part of the InsectNeuroNano project and under the joint direction of Professor Barbara Webb (Edinburgh) and Professor Elisabetta Chicca (Gronigen). The InsectNeuroNano project proposes the development of nanophotonic on-chip devices for integrated sensing and neural computation, inspired by the insect brain. It is a Horizon funded project with partners from Lund University (nano-devices, neurobiology), University of Copenhagen (semi-conductors, organic dyes), University of Gronigen (neuromorphic engineering) and University of Edinburgh (insect robotics). As proof of concept, we target the complete pathway from polarised light sensing in the insect eye to the internal compass and memory circuits in the central complex by which this information is integrated in a continuous accurate estimate of location. Within this project, the main role of the RA will be to take results from both anatomical and physiological studies and condense these into computational models, to abstract key principles of circuit function, as an essential bridge to hardware design. The position is available immediately and runs to 31 March 2024, but note there will then be a further 24 months funding at Gronigen and ideally the same person will continue in this RA role on the project for its 4 year duration. The salary range is £34,304 - £40,927 per annum. Candidates are expected to have a PhD in a relevant discipline and a strong background in computational neuroscience, including substantial experience in modelling neural circuits, with a track record of good journal publications in this area. The candidate is also expected to have good programming and system engineering skills, and ideally experience in working with robots, or relevant dynamic tasks involving sensorimotor control and learning. They should be willing to work with hardware systems where necessary. Candidates with direct experience and knowledge of insect neuroscience will be preferred. Informal enquiries can be directed to: Professor Barbara Webb (B.Webb(a)ed.ac.uk) Further information and application details are available here: https://elxw.fa.em3.oraclecloud.com/hcmUI/CandidateExperience/en/sites/CX_1… The closing date for applications is 5th April 2022 The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. Is e buidheann carthannais a th’ ann an Oilthigh Dhùn Èideann, clàraichte an Alba, àireamh clàraidh SC005336.

March 9, 2022

Postdoc in “Insect AI” at Edinburgh

by Barbara Webb

A postdoctoral research associate position is available to undertake computational modelling studies of learning mechanisms in the insect brain and apply them to robot control and navigation problems, contributing to the project Insect AI under the direction of Professor Barbara Webb, in the School of Informatics at the University of Edinburgh. The position is available immediately, runs to 31 December 2023, and has a salary range of £34,304 - £40,927 per annum. Candidates are expected to have a PhD in a relevant area and a strong background in computational neuroscience, including substantial experience in modelling neural circuits, with a track record of good journal publications in this area. The candidate is also expected to have good programming and system engineering skills, and ideally experience in working with robots, or relevant dynamic tasks involving sensorimotor control and learning. They should be willing to work with hardware systems where necessary. Candidates with direct experience and knowledge of insect neuroscience will be preferred. Informal enquiries can be directed to: Professor Barbara Webb (B.Webb(a)ed.ac.uk) Further information and application details are available here: https://elxw.fa.em3.oraclecloud.com/hcmUI/CandidateExperience/en/sites/CX_1… The closing date for applications is 7th April 2022 The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. Is e buidheann carthannais a th’ ann an Oilthigh Dhùn Èideann, clàraichte an Alba, àireamh clàraidh SC005336.

March 9, 2022

[Meetings] CRNS Talk Series (4) - Live Talk by Prof. Mehul Bhatt - Orebro University - Sweden

by Amir Aly

Dear All * Apologies for cross-posting* The *Center for Robotics and Neural Systems* (CRNS) is pleased to announce the talk of *Prof. **Mehul Bhatt* from *Orebro University* - Sweden on Wednesday, March 16th from *11:00 am* to *12:30* *pm* (*London time*) over *Zoom*. >> *Events*: The CRNS talk series will cover a wide range of topics including social and cognitive robotics, computational neuroscience, computational linguistics, cognitive vision, machine learning, AI, and applications to autism. More details are available here: https://www.plymouth.ac.uk/research/robotics-neural-systems/whats-on <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.plymo…> >> *Link for the next event (No Registration is Required)*: Join Zoom Meeting https://plymouth.zoom.us/j/95748572834?pwd=M05YTXhTVnBOK0R6WTlPaDJnTm5GUT09… >> *Title of the talk*: Artificial visual intelligence: Perceptual commonsense for human-centred cognitive technologies *Abstract*: This talk addresses computational cognitive vision and perception at the interface of (spatial) language, (spatial) logic, (spatial) cognition, and artiﬁcial intelligence. Summarizing recent works, I present general methods for the semantic interpretation of dynamic visuospatial imagery with an emphasis on the ability to perform abstraction, reasoning, and learning with cognitively rooted structured characterizations of commonsense knowledge pertaining to space and motion. I will particularly highlight: - explainable models of computational visuospatial commonsense at the interface of symbolic and neural techniques; - deep semantics, entailing systematically formalised declarative (neurosymbolic) reasoning and learning with aspects pertaining to space, space-time, motion, actions & events, spatio-linguistic conceptual knowledge; and - general foundational commonsense abstractions of space, time, and motion needed for representation mediated (grounded) reasoning and learning with dynamic visuospatial stimuli. The presented works –demonstrated in the backdrop of applications in autonomous driving, cognitive robotics, visuoauditory media, and cognitive psychology– are intended to serve as a systematic model and general methodology integrating diverse, multi-faceted AI methods pertaining knowledge representation and reasoning, computer vision, and machine learning towards realising practical, human-centred, computational visual intelligence. I will conclude by highlighting a bottom-up interdisciplinary approach –at the conﬂuence of cognition, AI, Interaction, and design science– necessary to better appreciate the complexity and spectrum of varied human-centred challenges for the design and (usable) implementation of (explainable) artiﬁcial visual intelligence solutions in diverse human-system interaction contexts. *Keywords*. Cognitive Vision; Knowledge Representation and Reasoning; Commonsense Reasoning; Deep Semantics; Declarative Spatial Reasoning; Com- puter Vision; Computational Models of Narrative; Human-Centred Computing and Design; Spatial Cognition and AI; Visual Perception; Multimodal Interaction; Autonomous Driving; HRI; Visuo-Auditory Media; Visual Art >> If you have any questions, please don't hesitate to contact me, Regards ---------------- *Dr. Amir Aly* Lecturer in Artificial Intelligence and Robotics Center for Robotics and Neural Systems (CRNS) School of Engineering, Computing, and Mathematics Room B332, Portland Square, Drake Circus, PL4 8AA University of Plymouth, UK

March 8, 2022

Symposium "From Cortical Microcircuits to Consciousness" 11-13, April 2022

by Zélie Tournoud

*From Cortical Microcircuits to Consciousness (CORTICON)* In person Symposium Institut Catholique de Paris, Paris, France 11-13 April 2022 The Symposium aims at bringing together neuroscientists from the Human Brain Project and invited guests to present their latest achievements in understanding cortical circuits at various scales, including the emergence of consciousness. The involvement of neuronal and neuroglial cells in brain functioning, memory, learning, cognition and consciousness in health and disease will be discussed from the experimental and theoretical perspective. The Symposium will also address neuroethics and neurophilosophy with links to society in a public key note, followed by a panel discussion by experts. Talks will be recorded and later put online. It will also offer a hands-on session on The Virtual Brain, the principal full brain network simulator in EBRAINS for constructing and simulating personalised brain models. We hope to see many of you in Paris at the Institut Catholique de Paris, close to Jardin du Luxembourg, in April 2022. Walter Senn, Alain Destexhe and Ausra Saudargiene ------------------------------------------------------------------------------ *Abstract submission* (300 words, for Posters): 15 March 2022 *Registration deadline:* 6 April 2022 *Info and program:*https://www.humanbrainproject.eu/en/education/corticon/ <https://www.humanbrainproject.eu/en/education/corticon/> *Speakers:* Katrin Amunts | Human Brain Project Scientific Research Director Melanie Boly | University of Wisconsin, USA Stanislas Dehaene | Collège de France Alain Destexhe | Centre National de la Recherche Scientifique, France Kathinka Evers | Uppsala University, Sweden Wulfram Gerstner | Ecole Polytechnique Fédérale de Lausanne, Switzerland Jeanette Hellgren-Kotaleski | KTH Royal Institute of Technology, Sweden Viktor Jirsa | Aix-Marseille University, France Christof Koch | Allen Institute for Brain Sciences, USA Matthew Larkum | Humboldt University of Berlin, Germany Marja-Leena Linne | Tampere University, Finland Marcello Massimini | University of Milan, Italy Lucia Melloni | Max Planck Institute for Human Cognitive and Brain Science, Germany Michele Migliore | Institute of Biophysics, Italian National Research Council, Italy Lars Muckli | University of Glasgow, UK Theofanis Panagiotaropoulos | Inserm, NeuroSpin, France Cyriel Pennartz | University of Amsterdam, Netherlands Panayiota Poirazi | IMBB-FORTH, Greece Petra Ritter | Berlin Institute of Health, Germany Pieter Roelfsema | Netherlands Institute for Neuroscience, Netherlands Ausra Saudargiene | Lithuanian University of Health Sciences, Lithuania Walter Senn | University of Bern, Switzerland Johan Storm | Institute of Basic Medical Sciences, University of Oslo, Norway Chris Summerfield | University of Oxford, UK Marmaduke Woodman | Aix-Marseille University, France _____ *Zélie Tournoud*/// EITN Communication manager/ *European Institute for Theoretical Neuroscience (EITN)* UMR 9197 – *NeuroPSI*(Institut des Neurosciences Paris-Saclay) CNRS – Université Paris-Saclay Centre CEA Paris-Saclay Bâtiment 151 91400 Saclay https://www.eitn.org <https://www.eitn.org>

March 8, 2022

Comp Neuro PhD position, Moreno Bote Lab, Barcelona

by Ruben Moreno Bote

*PhD Position in* *Computational Neuroscience, Ruben Moreno-Bote Lab * *Center for Brain and Cognition, University Pompeu Fabra, Barcelona, Spain* 1 fully funded PhD position is available in the group of Theoretical and Cognitive Neuroscience of Ruben Moreno-Bote in the Center for Brain and Cognition at the University Pompeu Fabra, Barcelona, Spain. We are looking for excellent candidates with Physics, Mathematics or Machine Learning background interested in developing theory for the brain and mind. Knowledge of Computational Neuroscience or Neuroscience would be ideal, but it is not necessary. The candidate will develop state of the art theory and models of cognition and intelligence by using neural networks, reinforcement learning, machine learning, data analysis and multielectrode neural data. The main research topic of our lab is decision-making, from a multidisciplinary angle. The candidate will benefit from the stimulating environment of Barcelona area in Theoretical and Systems Neuroscience and will have the opportunity of enjoying a lively city. Our lab (https://www.upf.edu/web/tcn) forms part of a larger network of neuroscience labs in Barcelona. Financial support is provided by HHMI and the Spanish MINECO. APPLICATION: A full CV in pdf format and an extract of grades for degree and master studies should be sent to the following address: ruben.moreno(a)upf.edu DEADLINE: until the position is filled STARTING DATE: any time between September 2022 and January 2023 -- Rubén Moreno Bote Serra Húnter Professor Director of the Theoretical and Cognitive Neuroscience Group Center for Brain and Cognition & Dept. of Information and Communications Technologies University Pompeu Fabra Campus Ciutadella c\ Ramon Trias Fargas, 25-27 Mercè Rodoreda building, 3th floor (room 24.331) 08005 Barcelona, Spain https://www.upf.edu/web/tcn https://twitter.com/morenobote <https://twitter.com/morenobote?lang=ca>

March 8, 2022

[CFP, Deadline Extended] MDPI Molecules (IF: 4.412) - Special Issue "Practical Aspects of Molecular Communications"

by Murat Kuşcu

(Apologies if you receive multiple copies of this CFP) MDPI Molecules (IF: 4.411, ISSN: 1420-3049) Special Issue on Practical Aspects of Molecular Communications https://www.mdpi.com/journal/molecules/special_issues/molecular_communicati… --------------------------- CALL FOR PAPERS The Internet of Bio-Nano Things (IoBNT) is an emerging technology that aims to extend our connectivity to nanoscale and biological environments with collaborative nanonetworks of artificial nanomachines and biological entities integrated into the Internet infrastructure. To enable the IoBNT and its groundbreaking applications, such as continuous intrabody health monitoring, it is imperative to devise low-complexity nanoscale communication techniques suitable for the envisioned nanomachines of simple architectures. The most promising communication technology for realizing the IoBNT is Molecular Communications (MC), as it ubiquitously manifests itself in many complex biological systems in the Universe, and thus, stands as one of the most common communication modalities, optimized from many aspects as a result of billions of years of evolutionary advancement. Making use of this naturally existing technology requires understanding its foundations through our existing modeling and analysis tools. This quest, which started almost 15 years ago, has received increasing attention from ICT researchers, which have been overly inspired by conventional electromagnetic communication technologies in their approach to this radically different paradigm. These theoretical approaches, however, have not always come with sufficient physical relevance. Currently, this emerging field has come to a critical turning point, as many researchers have started to report on initial MC experiments following different approaches and using different materials, while consistently pointing out a discrepancy between the obtained experimental results and the past theoretical work. This reveals the need to rethink the previous efforts and come up with new interdisciplinary strategies, thus building practical MC techniques and developing feasible MC system components, experimental testbeds, and prototypes in order to close the gap between theory and practice, and expedite the transfer of this emerging technology to the market. Among the challenges stated above, this Special Issue is particularly focused on the practical aspects of MC. Therefore, we are calling for technical papers that report on new research with the potential to move this field forward towards its practical applications, as well as surveys/tutorials focusing on the practical challenges of MC research. Hence, its scope encompasses a wide range of interdisciplinary research topics, with some examples listed as follows: ** The physical design, modeling, and implementation of MC system components (e.g., transmitter, receiver, channel); ** The design and implementation of MC testbeds; ** Practical and low-complexity MC methods (e.g., modulation, detection, channel estimation, synchronization, coding methods); ** The testing and validation of MC transceiver/channel models and MC methods; ** Applications of microfluidics, biosensors, and nanomaterials for MC system design; ** Bio-cyber interfaces between MC networks and conventional macroscale networks; ** Synthetic biology-based MC transceiver architectures; ** Optimization of ligand-receptor interactions for MC; ** Biocompatibility and co-existence challenges; ** Energy harvesting and power transfer techniques for MC networks; ** The design and demonstration of MC applications (e.g., those in healthcare, agriculture, biocomputing). --------------------------- Deadline for manuscript submissions: *31** July 2022* --------------------------- Guest Editors Murat Kuscu, Koc University, Turkey (mkuscu(a)ku.edu.tr) Sasitharan Balasubramaniam, University of Nebraska-Lincoln, USA ( sasi(a)unl.edu) Kerstin Lenk, Graz University of Technology, Austria (kerstin.lenk(a)tugraz.at ) Ergin Dinc, University of Cambridge, UK (ed502(a)cam.ac.uk) Michael Barros, University of Essex, UK (m.barros(a)essex.ac.uk) Bige D. Unluturk, Michigan State University, USA (unluturk(a)msu.edu) --------------------------- Paper submission Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Manuscripts can be submitted until the deadline. All papers will be peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website. Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Molecules is an international peer-reviewed open access semimonthly journal published by MDPI. Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2300 CHF (Swiss Francs). --------------------------- Additional information: Please visit the MDPI Molecules Special Issue webpage at: https://www.mdpi.com/journal/molecules/special_issues/molecular_communicati… Inquiries can be addressed to Mr. Gavin Fu at: gavin.fu(a)mdpi.com <gavin.fu(a)mdpi.com>, molecules(a)mdpi.com

March 7, 2022

Postdoctoral Fellowship in Machine Learning for Brain Connectivity in Clinical Neuroscience

by Paolo Avesani

A postdoctoral fellowship in Machine Learning for Brain Connectivity in Clinical Neuroscience We are pleased to announce the opening of one Postdoctoral Fellowship at the Neuroinformatics Lab, an interdisciplinary initiative between the Center for Mind/Brain Sciences (CIMeC) of the University of Trento, and the Center for Digital Health of Fondazione Bruno Kessler. The position is part of the “Neusurplan” project, an integrated approach to neurosurgery planning based on multimodal and longitudinal data. The goal is to pursue an integrated approach to pre-operative neurosurgical planning, combining structural and functional characterization of brain connectivity. The data driven strategy will take advantage of a unique dataset of intra-operative points of directed electrical stimulation and the related functional responses. In this project, the candidate will pursue research on machine learning methods for neuroimaging data analysis to study and characterize brain connectivity, with applications to longitudinal studies and clinical practice. The ideal candidate should have a mixed background in neuroimaging techniques and numerate disciplines, like computer science, engineering, physics, or mathematics. This project is in collaboration with the Division of Neurosurgery, S. Chiara Hospital, Trento (IT). The position is for a 2 year Postdoc Fellowship (May, 2022 - April, 2024). To apply, follow the instructions at this link: https://bit.ly/nilab2022call Deadline for application: 21 March 2022. For questions about the position, please contact Paolo Avesani ( paolo.avesani(a)unitn.it) and/or Emanuele Olivetti (olivetti(a)fbk.eu) The University of Trento ranks among top Italian Universities ( https://www.unitn.it/en/ateneo/1636/rankings) Fondazione Bruno Kessler ranks first among the Italian research centers in Engineering and Computer Science ( https://magazine.fbk.eu/en/news/fbk-ranks-1st-in-italy-for-scientific-excel… ). To also consider a work/life balance, there is more than our passion for translational research. You can check these pointers for a flavor of life quality in Trentino: https://www.visittrentino.info/en; https://www.discovertrento.it/en A few papers related to the project are below: Bertò G,et al., (2021) Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation, Neuroimage, 224 https://doi.org/10.1016/j.neuroimage.2020.117402 Sarubbo S, et al., (2020) Mapping critical cortical hubs and white matter pathways by direct electrical stimulation: an original functional atlas of the human brain, Neuroimage, 205 https://doi.org/10.1016/j.neuroimage.2019.116237 Astolfi P, et al., (2020) Tractogram filtering of anatomically non-plausible fibers with geometric deep learning, International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) LNCS, vol 12267. Springer https://doi.org/10.1007/978-3-030-59728-3_29 Sarubbo S, et al., (2021) Planning brain tumor resection using a probabilistic atlas of cortical and subcortical structures critical for functional processing: a proof of concept, Operative Neurosurgery, 20(3), 175-183 https://doi.org/10.1093/ons/opaa396 -- ------------------------------------------------------- Paolo Avesani Fondazione Bruno Kessler via Sommarive 18, 38050 Povo (TN) - I phone: +39 0461 314336 fax: +39 0461 302040 email: avesani(a)fbk.eu web: avesani.fbk.eu -- -- Le informazioni contenute nella presente comunicazione sono di natura privata e come tali sono da considerarsi riservate ed indirizzate esclusivamente ai destinatari indicati e per le finalità strettamente legate al relativo contenuto. Se avete ricevuto questo messaggio per errore, vi preghiamo di eliminarlo e di inviare una comunicazione all’indirizzo e-mail del mittente. -- The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. If you received this in error, please contact the sender and delete the material.

March 7, 2022

EMBO Practical Course - Barcelona summer school for Advanced Modelling of Behavior (BAMB!) -, September 1-8, 2022

by Alexandre Hyafil

The Barcelona summer school for Advanced Modelling of Behavior (BAMB! <http://www.bambschool.org>) teaches advanced techniques in model-based analysis of behavior (humans and other species) to cognitive and computational neuroscientists at PhD and early career levels. This will be achieved through structured lectures, talks, hands-on tutorials and group projects aimed at making knowledge obtained directly applicable to the participants' own research. We want the trainees to acquire both the conceptual bases and the technical skills that will enable them to pursue a full modelling approach on their own when they come back to their lab. The course is intended for PhD students and postdocs in cognitive and computational neuroscience with a solid background in computational/quantitative analysis to benefit maximally from the advanced training offered by the course. Proficiency in either Python or Matlab is also required. We seek a nice blend of experimentalists (cognitive psychology / neuroscience) and theoreticians (with or without experience in cognitive modeling). Scientists from underrepresented groups and countries are especially encouraged to apply. The school is an EMBO Practical Course <https://www.embo.org/conferences-training/> and is organized by the Centre de Recerca Matemática <http://www.crm.cat>. A limited number of travel grants <https://www.embo.org/funding/lecture-travel-and-childcare-grants/travel-gra…> will be available from EMBO. Organizers: Chris Summerfield (Oxford / Deepmind) Klaus Wimmer (CRM, Barcelona) Alex Hyafil (CRM, Barcelona) Confirmed Faculty: Jean Daunizeau (ICM, Paris) Alex Hyafil (CRM, Barcelona) Máté Lengyel (Cambridge) Zhaoping Li (Tübingen) Alfonso Renart (Champalimaud) Marion Rouault (ENS Paris) Kim Stachenfeld (Deepmind) Chris Summerfield (Oxford / Deepmind) MH Tessler (Deepmind) Klaus Wimmer (CRM, Barcelona) Dates and location: September 1-8, downtown Barcelona, Spain Applications are open until April 13. Please see the course website for further details: www.bambschool.org.

March 7, 2022

INCF/OCNS Software working group survey on software usage

by Ankur Sinha

Dear all, We, the INCF/OCNS Software working group, are conducting a short anonymous survey to collect information on the usage of common software tools in comp-neuro. Could we please request you to spend 2 minutes of your time to fill it out here: https://forms.gle/NXWv2CwtWBSB9BXv9 The information gathered in the survey will be used to organise sessions/workshops related to the software, and improve awareness about them and their maintenance. On behalf of the Software WG, -- Thanks, Regards, Ankur Sinha (He / Him / His) Research Fellow at the Silver Lab | http://silverlab.org/ Department of Neuroscience, Physiology, & Pharmacology University College London, London, UK Time zone: Europe/London

March 7, 2022

Survey on the technical landscape and barriers present in EEG research informatics

by Christian O'Reilly

Dear colleagues, We'd appreciate your time completing this brief survey, for a new initiative, EEGNet <https://protect2.fireeye.com/v1/url?k=31323334-501d2dca-31327df5-4544555345…> , which aims to leverage open-source infrastructure for sharing and annotating open standardized EEG datasets with automated processing workflows. We are keen to have your views on the technical landscape and barriers present in EEG research informatics. Click here to take this survey <https://protect2.fireeye.com/v1/url?k=31323334-501d2dca-31327df5-4544555345…> (https://tinyurl.com/4rruuz42) which should take around 10 minutes -- and thank you for sharing it with colleagues in your field. If you're interested in sharing tools and data through EEGNet and providing more input on the platform, please let us know via the embedded links you'll find in the survey. EEGNet is a constituent organization of the Global Brain Consortium (GBC <https://protect2.fireeye.com/v1/url?k=31323334-501d2dca-31327df5-4544555345…>), an international neuroscience collaboration focused on EEG-mediated applications in global health. Thank you for your valuable input - We are hoping to have all responses back as soon as possible. Christian O'Reilly ------------------ Assistant Professor, University of South Carolina (UofSC) Department of Computer Science and Engineering Artificial Intelligence Institute (#AIISC) Autism and Neurodevelopmental Disorders Center (#USCAND) Institute for Mind and Brain

March 6, 2022

Postdoc position

by Cian O'Donnell

Postdoc position in Computational Neuroscience Intelligent Systems Research Centre, Ulster University, Derry/Londonderry, UK We are looking for a computational/mathematical neuroscience research associate to build stochastic models of gene expression in neurons to try to understand how or if synapses can store information stably. Post has funding for up to 3 years. You will be based in the group of Cian O'Donnell at Ulster University in Derry, Northern Ireland, UK (https://odonnellgroup.github.io) but closely collaborating with and visiting the mathematical neuroscience group of Romain Veltz at INRIA, Sophia-Antipolis, France (http://romainveltz.pythonanywhere.com) In addition to mathematical/computational modelling, as part of the project you will have the opportunity to analyse in vivo and in vitro imaging data from experimental collaborators Noam Ziv, Technion, Israel (https://noamziv.net.technion.ac.il) and Haining Zhong, OHSU, USA (https://www.hainingzhonglab.com) You will also be a member of the Intelligent Systems Research Centre (http://isrc.ulster.ac.uk) which hosts a community of researchers working across computational and cognitive neuroscience, neurotechnology, neuromorphic engineering, machine learning, robotics and related fields. You should have: - PhD in computational neuroscience/biology, applied mathematics, computer science, engineering, physics, or related field. - Expertise in one or more programming languages for scientific computing such as Python, Julia, MATLAB, or similar. - Experience of computational/mathematical modelling of biological or related systems. Derry is lively city of ~100K people situated on the River Foyle, in the north-west of the island of Ireland. It has a highly affordable cost of living, thriving cultural scene, and access to spectacular coastal scenery and the great outdoors in Donegal and the north coast of Northern Ireland. Application deadline is 13th March 2022. Follow this link (https://www.ulster.ac.uk/about/jobs) and search for job ref 010982. Please contact Cian (c.odonnell2(a)ulster.ac.uk<mailto:c.odonnell2@ulster.ac.uk>) for informal enquiries. -- Cian O’Donnell Lecturer in Data Analytics School of Computing, Engineering and Intelligent Systems Ulster University https://odonnellgroup.github.io

March 4, 2022

A new postcast about how neural models can link brain to mind

by Grossberg, Stephen

Dear Comp-Neuro Colleagues, I just enjoyed a wide-ranging conversation about my work on Roi Yozevitch’s podcast: https://www.youtube.com/watch?v=JwqFmmhBbqA&t=49s Among other topics, we discussed my recently published Magnum Opus: Conscious Mind, Resonant Brain: How Each Brain Makes a Mind https://www.amazon.com/Conscious-Mind-Resonant-Brain-Makes/dp/0190070552 https://global.oup.com/academic/product/conscious-mind-resonant-brain-97801… Best, Steve Grossberg sites.bu.edu/steveg

March 3, 2022

Postdoc in Computational Neuroscience at NYU

by Cristina Savin

Postdoc in Computational Neuroscience at NYU We are seeking a creative and driven computational neuroscience postdoctoral fellow to work on a collaborative project between the labs of Dora Angelaki (https://angelakilabnyu.org/ <https://angelakilabnyu.org/>) and Cristina Savin (http://www.cns.nyu.edu/~csavin <http://www.cns.nyu.edu/~csavin>) at New York University. The project studies neural representations underlying foraging behavior in monkeys, comparing both freely-moving and head-restrained behaviors, funded by the NIH BRAIN Initiative. The position is initially for one year, with the possibility of renewal. The successful candidate will have: a strong quantitative background demonstrable interest in neuroscience obtained (or be close to the completion of) a PhD in computational neuroscience, physics, mathematics, computer science, machine learning, statistics, etc ability to work in a strongly collaborative and interdisciplinary setting Preference will be given to candidates with: expertise in probabilistic machine learning strong programming skills, ideally in python previous experience with neural data analysis To send your application please provide your cv, a brief statement of research interests, and the contact details for reference letters to <csavin(a)nyu.edu <mailto:csavin@nyu.edu>>. For informal queries, please contact Cristina Savin (csavin(a)nyu.edu <mailto:csavin@nyu.edu>) or Dora Angelaki(da93(a)nyu.edu <mailto:da93@nyu.edu>). We will be available for in person discussions at the upcoming Cosyne meeting.

Feb. 28, 2022

Assistant Professor in Computational Neuroscience (W1) with tenure track option (to W2) at the Institute for Cognitive Science, University of Osnabrück.

by Peter König

Great opportunity in Computational Neuroscience: Assistant Professor in Computational Neuroscience (W1) with tenure track option (to W2) at the Institute for Cognitive Science, University of Osnabrück. (apologies for multiple postings) Full details at: https://www.uni-osnabrueck.de/universitaet/stellenangebote/stellenangebote-… --- This tenure-track Professorship is funded by the German Federal Government and the Länder under its Program for the Promotion of Young Academics (Tenure-Track Program). Upon meeting the general administrative requirements, you will be employed as a civil servant on limited tenure for an initial period of three years. If you receive a positive evaluation after the initial three years, this period can be extended by up to three further years. If you meet Osnabrück University’s standards with respect to ability, competence and academic achievement, you will be offered a tenured W2 Professorship in accordance with the relevant legal provisions without further application. Tasks and Responsibilities: Research and teaching should be in the area of computational neuroscience. The professorship and research should be focused on understanding principles of neuronal information processing and cognitive processes. The professorship complements and cooperates with the existing research groups of the Institute of Cognitive Science at Osnabrück University. Further, the holder of the position should actively contribute to existing and future collaborative research projects (e.g. RTG Situated Cognition, RTG Computational Cognition) and should participate in the respective continuation research proposal of the Research Training Group Computational Cognition. In addition, the professorship should engage in teaching in all degree programs of Cognitive Science (BSc, MSc, PhD). Teaching is in English. Conditions of Employment: Condition of employment is: - Research experience in the field of neuronal information processing with the focus of understanding principles of neuronal information processing or cognitive processes. - Research focus on at least one of the two following topics: - Methods of Experimental cognitive neuroscience like EEG, MEG, fMRI, TMS, cell recordings, eyetracking, or virtual reality - Models of information processing in neurons, networks of neurons like for example deep neuronal networks and machine learning. - A coherent research profile, must be motivated by or explain experimental data and there must be a realistic perspective to implement all parts of the own research, including the experimental components or data collection, at the university of Osnabrück. - An excellent command of the English language. - Willingness to participate in university administrative processes and commission work. For non-German speaking applicants, willingness is expected to learn the German language with a sufficient proficiency within two years. In addition, it would be welcome: - Teaching experience in the field of the professorship - Experience with acquiring third party research funding. Legal Conditions of Employment: You will hold a first degree, have a strong commitment to teaching, and have demonstrated your ability to engage independently in advanced academic research, as a rule by obtaining an outstanding PhD (in accordance with Section 30 subsection 2 of the Lower Saxony Higher Education Act [NHG]) in a relevant subject. The time between the applicant’s final PhD examination or the completion of other equivalent qualifications which qualify the applicant for the position in accordance with Section 30 para. 2 sentence 1 No. 3 Lower Saxony Higher Education Act and the applicant’s application for the assistant professorship should be no longer than four years. This period of time does not include periods caring for a child or several children under 18 years of age or periods caring for a dependent relative and increases by up to two years per child or period of care to a maximum four years in multiple cases of care (Section 30 para. 5 Lower Saxony Higher Education Act). The position is available on a full-time or part-time basis. Osnabrück University is a family-friendly university and is committed to helping working/studying parents balance their family and working lives. Osnabrück University is actively seeking to increase the number of female Professors in its employ. Applications from women are therefore particularly welcome. If two candidates are equally qualified, preference will be given to the candidate with disability status. For further information, please contact Prof. Dr Gordon Pipa, Tel. +49 541-969-2277, E-Mail: gpipa(a)uni-osnabrueck.de. Please submit your application (including a resume with full details of your scholarly and scientific employment history, list of publications and courses taught as well as planned research) in electronic form (as one pdf file) together with the “Bewerbungsprofil” [“Applicant Profile”] (DOCX, 13,58 kB) to the Dean of the School of Human Sciences, Prof. Dr. Susanne Boshammer, Universität Osnabrück, 49069 Osnabrück (bewerbungfb08(a)uni-osnabrueck.de) to arrive by March 27, 2022. Please enter the code word "CNtt" in the subject of your e-mail. We look forward to receiving your application. -- Prof. Dr. Peter König, Institute of Cognitive Science, University Osnabrück

Feb. 28, 2022

Cerebellar computation postdoc

by Nicolas Brunel

A postdoc position is available to build and analyze network models of cerebellar cortex that incorporate the diversity of cell types and synaptic connections observed in this structure. The goal of this research is to better understand the functions of these diverse cell types and connections. Approaches from statistical physics, nonlinear dynamics and machine learning will be used, and models will be constrained by new electrophysiological, transcriptomic and connectomic data. The postdoc will be jointly supervised by Wade Regehr (Department of Neurobiology at Harvard Medical School) and Nicolas Brunel (Duke University). The position will be based in Wade Regehr's lab, but with frequent visits to the Brunel lab at Duke. Applicants should have a strong background in computational/theoretical neuroscience, machine learning, theoretical physics, and/or applied mathematics. We are committed to building a diverse intellectual community, and particularly encourage women and members of underrepresented groups to apply to this position. For more information on the labs: Regehr Lab: https://urldefense.com/v3/__https://regehrmedharvard.wordpress.com/__;!!OTo… Brunel Lab: https://www.neuro.duke.edu/research/faculty-labs/brunel-lab Please email a cover letter explaining background and interest in the position, a curriculum vitae, and names & email addresses of two references to: Kim McDaniels Kimberly_Mcdaniels(a)hms.harvard.edu<mailto:Kimberly_Mcdaniels@hms.harvard.edu> Please have the subject of the email: “Computational Postdoc Applicant:” Your Name

Feb. 25, 2022

Assistant Prof (W1) TT @ Uni Osnabrück, Germany

by Ulrich G. Hofmann

This open position may be of interest to Comp Neuro scientists: https://www.uni-osnabrueck.de/universitaet/stellenangebote/stellenangebote-… ulrich hofmann

Feb. 25, 2022

Okinawa/OIST Computational Neuroscience Course 2022: application deadline extended

by Erik De Schutter

Because of impending changes to Japanese border controls we want to give potential applicants more time to consider spending a few summer weeks in Japan: the deadline for applications has been extended to Sunday March 2022. On Jan 25, 2022, at 11:31 , Erik De Schutter <erik(a)oist.jp> wrote: OKINAWA/OIST COMPUTATIONAL NEUROSCIENCE COURSE 2022 Methods, Neurons, Networks and Behaviors June 13 to June 29, 2022 Okinawa Institute of Science and Technology Graduate University, Japan https://groups.oist.jp/ocnc After two consecutive cancelations due to COVID-19, OCNC 2022 will take place on June 13-29, preceding Neuro2022 (https://neuro2022.jnss.org) in Okinawa. Depending on the immigration situation in June the course will be either pure on-site or hybrid: a mixture of on-site and remote. The aim of the Okinawa/OIST Computational Neuroscience Course is to provide opportunities for young researchers with theoretical backgrounds to learn the latest advances in neuroscience, and for those with experimental backgrounds to have hands-on experience in computational modeling. We invite graduate students and postgraduate researchers to participate in the course, held from June June 13 through June 29, 2022 at an oceanfront seminar house of the Okinawa Institute of Science and Technology Graduate University. Applications are through the course web page (https://groups.oist.jp/ocnc) only: January 26 - March 20, 2022. Applicants will receive confirmation of acceptance end of April. The 17th OCNC will be a shorter course than in the past: a two-week course covering single neurons, networks, and behaviors with time for student projects. Teaching will focus on methods with hands-on tutorials during the afternoons, and lectures by international experts. The course has a strong hands-on component based on student proposed modeling or data analysis projects, which are further refined with the help of a dedicated tutor. Applicants are required to propose their project at the time of application. However in the case of a hybrid format course, only on-site students will receive support for student projects. There is no tuition fee. The sponsor will provide lodging and meals during the course and may provide partial travel support. We hope that this course will be a good opportunity for theoretical and experimental neuroscientists to meet each other and to explore the attractive nature and culture of Okinawa, the southernmost island prefecture of Japan. Invited faculty: • Michael Berry II (Princeton University, USA) • Anne Churchland, Cold Spring Harbor Labs, USA • Erik De Schutter (OIST) • Kenji Doya (OIST) • Gaute Einevoll, Norwegian University of Life Sciences (online) • Tomoki Fukai (OIST) • Boris Gutkin (Ecole Normale Supérieure, Paris, France) • Yukiyasu Kamitani, Kyoto University, Japan • Bernd Kuhn (OIST) • Sang Wan Lee, KAIST, South Korea • Devika Narain, Erasmus Medical Center, Rotterdam, Netherlands • Viola Priesemann, MPG Göttingen, Germany (online) • Ivan Soltesz, Stanford University, USA • Greg Stuart, Australian National University, Australia • Greg Stephens (OIST) • Saori Tanaka, (ATR, Japan) • Marylka Yoe Uusisaari (OIST)

Feb. 25, 2022

Postdoctoral position in "Multiphysics Brain Aging Modeling" at Stevens Institute of Technology, New York City, USA

by Johannes Weickenmeier

Dear all. A postdoctoral position in “Multiphysics Brain Aging Modeling” is available in the group of Prof. Johannes Weickenmeier (www.weickenmeierlab.com<http://www.weickenmeierlab.com>). The Matter Biomechanics Lab combines experimental methods to biomechanically characterize brain tissue properties and various computational modeling techniques (e.g. finite element analysis, multiphysics modeling, medical image analysis) with the ultimate goal to better understand healthy brain aging and neurodegenerative diseases. Our constitutive aging and Alzheimer’s disease models couple neurobiology and mechanics (i.e. morphological shape changes and tissue loading) in order to identify abnormal aging patterns and brain regions at risk of developing secondary damage, such as white matter hyperintensities, hypoperfusion, traumatic injury, and vascular degeneration. We validate our models against longitudinal imaging data from databases such as the Alzheimer’s Disease Neuroimaging Initiative (ADNI). We are looking for applications with prior experience in advanced medical image analysis, data analysis, and modeling. Knowledge in the biology of aging is a significant advantage. The research will be performed at the campus of Stevens Institute of Technology right outside of New York. The position is funded through a grant from the NIH. The position is available now until filled. To apply, please send a motivation letter, CV, and contact information for 2-3 references to Prof. Johannes Weickenmeier (johannes.weickenmeier (at) stevens.edu) Stay well, Johannes Weickenmeier _______________________________________ Johannes Weickenmeier, PhD, Assistant Professor and Director of the Center for Neuromechanics Stevens Institute of Technology | Department of Mechanical Engineering |phone: 201-216-5527 | pronouns: he/him/his | Soft Matter Biomechanics: www.weickenmeierlab.com<https://nam02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.weicke…>

Feb. 23, 2022

14ᵗʰ Advanced Scientific Programming in Python in Bilbao Spain, 5–11 September, 2022

by Jakob Jordan

ASPP2022: 14ᵗʰ Advanced Scientific Programming in Python ======================================================== a Summer School by the ASPP faculty and the Faculty of Engineering of the Mondragon University, Bilbao https://aspp.school Scientists spend more and more time writing, maintaining, and debugging software. While techniques for doing this efficiently have evolved, only few scientists have been trained to use them. As a result, instead of doing their research, they spend far too much time writing deficient code and reinventing the wheel. In this course we will present a selection of advanced programming techniques and best practices which are standard in the industry, but especially tailored to the needs of a programming scientist. Lectures are devised to be interactive and to give the students enough time to acquire direct hands-on experience with the materials. Students will work in pairs throughout the school and will team up to practice the newly learned skills in a real programming project — an entertaining computer game. We use the Python programming language for the entire course. Python works as a simple programming language for beginners, but more importantly, it also works great in scientific simulations and data analysis. We show how clean language design, ease of extensibility, and the great wealth of open source libraries for scientific computing and data visualization are driving Python to become a standard tool for the programming scientist. This school is targeted at Master or PhD students and Post-docs from all areas of science. Competence in Python or in another language such as Java, C/C++, MATLAB, or R is absolutely required. Basic knowledge of Python and of a version control system such as git, subversion, mercurial, or bazaar is assumed. Participants without any prior experience with Python and/or git should work through the proposed introductory material before the course. We are striving hard to get a pool of students which is international and gender-balanced. Date & Location =============== 5–11 September, 2022. Bilbao, Spain. Application =========== You can apply online: https://aspp.school Application deadline: 23:59 UTC, Sunday 1 May, 2022. There will be no deadline extension, so be sure to apply on time. Be sure to read the FAQ before applying: https://aspp.school/wiki/faq Participation is for free, i.e. no fee is charged! Participants however should take care of travel, living, and accommodation expenses by themselves. We are in the process of securing some funds for supporting students with accommodation and living costs. Program ======= • Version control with git and how to contribute to open source projects with GitHub • Best practices in data visualization • Testing and debugging scientific code • Advanced NumPy • Organizing, documenting, and distributing scientific code • Advanced scientific Python: context managers and generators • Writing parallel applications in Python • Profiling and speeding up scientific code with Cython and numba • Programming in teams Faculty ======= • Jakob Jordan, Department of Physiology, University of Bern Switzerland • Jenni Rinker, Department of Wind Energy, Technical University of Denmark, Roskilde Denmark • Lisa Schwetlick, Experimental and Biological Psychology, Universität Potsdam Germany • Nicolas Rougier, Inria Bordeaux Sud-Ouest, Institute of Neurodegenerative Diseases, University of Bordeaux France • Pamela Hathway, GfK, Nuremberg Germany • Pietro Berkes, NAGRA Kudelski, Lausanne Switzerland • Rike-Benjamin Schuppner, Institute for Theoretical Biology, Humboldt-Universität zu Berlin Germany • Tiziano Zito, Department of Psychology, Humboldt-Universität zu Berlin Germany • Zbigniew Jędrzejewski-Szmek, Red Hat Inc., Warsaw Poland Organizers ========== Head of the organization for ASPP and responsible for the scientific program: • Tiziano Zito, Department of Psychology, Humboldt-Universität zu Berlin Germany Organization team in Bilbao: • Aitor Morales-Gregorio, Theoretical Neuroanatomy, Institute of Neuroscience and Medicine (INM-6), Forschungszentrum Jülich, Germany • Carlos Cernuda, Data Analysis & Cybersecurity, Faculty of Engineering, Mondragon Unibertsitatea, Bilbao Spain Website: https://aspp.school Contact: info(a)aspp.school

Feb. 23, 2022

Call for proposals for workshops and tutorials at CNS*2022 Melbourne

by Thomas Nowotny

OCNS Organisation for Computational Neurosciences Dear com-neuro community, We are requesting proposals for workshops and tutorials at CNS*2022 from the international community of computational neuroscientists. The 31st Annual Computational Neuroscience Meeting, CNS*2022, will be held at Melbourne, Australia, 16-20 July 2022. Proposals from all levels of faculty as well as advanced postdoctoral fellows are welcome. Tutorials are to be held on the first day and workshops on the last two days of the CNS*2022 Meeting. This is an excellent opportunity to reach international audience of computational neuroscience researchers participating in this meeting. Please see the links below for detailed information. Questions regarding workshops and tutorials should be addressed to workshops(a)cnsorg.org<mailto:workshops@cnsorg.org> or tutorials(a)cnsorg.org<mailto:tutorials@cnsorg.org> as appropriate. We are looking forward to your submissions. CALL FOR WORKSHOPS: https://www.cnsorg.org/cns-2022-call-for-workshops Priority Deadline for proposals: April 15 Jorge Mejias, Workshops Chair for CNS*2022 CALL FOR TUTORIALS: https://ocns.memberclicks.net/cns-2022-call-for-tutorials Deadline for proposals: April 15 Anca Doloc-Mihu, Tutorials Chair for CNS*2022 With kind regards, Thomas Nowotny, Vice President, on behalf of The OCNS Board of Directors -- Prof Thomas Nowotny Head of AI Research Group School of Engineering and Informatics University of Sussex Falmer, Brighton BN1 9QJ, UK Phone: +44-1273-678593 FAX: +44-1273-877873

Feb. 23, 2022