- Comp-neuro - lists.cnsorg.org

PhD post in Computational Neuroscience

by McDaid, Liam

Dear all, A PhD position in Computational Neuroscience is available at the Ulster University where the closing date for applications is Friday 24th February 2017. The position is fully funded with a start date of October 2017. Project title: A Computational Model of Regulating Neuronal Excitability by GABA Neurons The successful candidate will be based at Ulster working within the Intelligent Systems Research Centre (ISRC) and the position will involve close collaboration with colleague at University College London and the University of Manchester. The project will build on recent findings where it was shown that the GAT3 transporter facilitates the uptake of extracellular GABA and this is accompanied by a large increase in intracellular Na+ concentration, which can reverse the Na+/Ca2+ exchanger causing an intercellular increase in Ca2+. This may have an important role in regulating blood flow and also can result in the release of gliotransmitters, which is believed to modulate synaptic strength and transmission. Moreover, it is now believed that GAT3 induces a rise in extracellular adenosine that acts at presynaptic adenosine receptors and this is likely to cause a decrease in secondary messengers within cells. This is a completely novel mechanism of glia-neuron communication and capturing this interaction will be the major focus of this PhD. This exciting project will require the graduate to collaborate with experimental neuroscientists in the development of computational models of the above GABA mediated interactions and therefore at the end of the PhD study period he/she will expect to have gained significant expertise in computational modelling and neuroscience. We would also like to encourage international applicants. For more information on how to apply go to: https://www.ulster.ac.uk/faculties/computing-and-engineering/schools/resear… ________________________________ This email and any attachments are confidential and intended solely for the use of the addressee and may contain information which is covered by legal, professional or other privilege. If you have received this email in error please notify the system manager at postmaster(a)ulster.ac.uk and delete this email immediately. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Ulster University. The University's computer systems may be monitored and communications carried out on them may be recorded to secure the effective operation of the system and for other lawful purposes. Ulster University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of a separate attachment, the text of email is not intended to form a binding contract. Correspondence to and from the University may be subject to requests for disclosure by 3rd parties under relevant legislation. The University of Ulster was founded by Royal Charter in 1984 and is registered with company number RC000726 and VAT registered number GB672390524.The primary contact address for Ulster University in Northern Ireland is Cromore Road, Coleraine, Co. Londonderry BT52 1SA

Feb. 20, 2017

Postdoctoral position modeling gamma synchrony in Carmen Canavier's lab

by Canavier, Carmen C.

Description A Senior Postdoctoral Researcher position is available in the area of Computational Neuroscience in the Department of Cell Biology and Anatomy, LSU Health New Orleans in the lab of Dr. Carmen Canavier. The main project will take an existing model of interneuronal network gamma (ING) and embed it within a network of hippocampal pyramidal neurons in order to build a model of pyramidal-interneuronal gamma (PING). The project will include both theoretical and empirical analyses of the synchronization properties of these networks, and in particular the contribution of intrinsic neuronal properties as compared to synaptic properties. These analyses require knowledge of linear and nonlinear systems theory, probability theory and signal processing. The project will require programming in python and the simulation package NEURON to run parallelized simulations on a Linux cluster. This position will include administering the lab’s computational cluster and mentoring both graduate and undergraduate students. Qualifications * Ph.D. in Engineering, Mathematics, Neuroscience, Physics, Computer Science or a related field of study * At least three (3) years of experience in computational neuroscience Preferred Qualifications * Writing code, running the simulation package NEURON, using single neuron models * Signal processing experience and familiarity with nonlinear dynamics Applicant Instructions Qualified applicants should submit curriculum vitae and three letters of reference using the following link https://www.lsuhsc.edu/Administration/hrm/CareerOpportunities/Home/Detail/1…

Jan. 25, 2017

Symposia on Memory, March 6-10 in Barcelona

by Alex Roxin

Dear all, This is a reminder that there will be a week-long series of Symposia on Memory at the Centre de Recerca Matemàtica this coming March 6-10. We will focus on a different topic each day, e.g. molecular and synaptic basis of memory, circuit mechanisms, cortex and hippocampus, and so on. There will be both experimental and theoretical talks; please look at the schedule if you are curious. You can view the schedule and register here http://www.crm.cat/en/Activities/Curs_2016-2017/Pages/MATHMEM_Symposia.aspx There is a special, reduced fee, single day registration if you cannot attend the full meeting. Note that the final day of the program will take place at the Institut d'Estudis Catalans, a historic building in the heart of Barcelona, right next door to where Santiago Ramón y Cajal taught medicine! You can still submit abstracts for a poster or a contributed talk of which there will be a limited number. The deadline for submission is the -31st of January-. I hope to see you in Barcelona. best regards, Alex

Jan. 25, 2017

Call for abstracts, symposia and registration for CNS 2017 in Antwerp, Belgium

by Daniele Marinazzo

Dear all it's our pleasure to inform you that the site for the 26th Annual Computational Neuroscience Meeting is now up and running for submissions of papers and symposia proposals, and for registration. Please visit http://www.cnsorg.org/cns-2017 for all the info on the conference. We also have a twitter account https://twitter.com/CNS2017Antwerp Looking forward to seeing you in beautiful Antwerp from July 15th to 20th, for what will be a great meeting! On behalf of all the organizers Daniele -- Daniele Marinazzo -- Department of Data Analysis Faculty of Psychology and Pedagogical Sciences, Ghent University Henri Dunantlaan 1, B-9000 Ghent, Belgium +32 (0) 9 264 6375 <http://www.da.ugent.be/>http://users.ugent.be/~dmarinaz/ https://twitter.com/dan_marinazzo http://helpdesk.ugent.be/e-maildisclaimer.php

Jan. 24, 2017

Sense 2 Synapse 2017 Conference, Saturday April 8th, The Rockefeller University, New York City, Registration Open

by Christoph Kirst

Dear Neuroscience Community, we like to invite you to join us for this year's *Sense 2 Synapse *which will be held on Saturday, *April 8th, 2017* in the Carson Family Auditorium at *The Rockefeller University, New York City *! The conference is an annual event for scientists working on the biology of sensory transduction, subsequent neural processing and perception. With *Larry Abbott *(Columbia University), *Nicole Rust* (University of Pennsylvania),****Sarah Woolley**(Columbia University) and*Gaby Maimon* (The Rockefeller University) we have a great list of key-note speakers, which will be complemented by talks selected from abstract submissions and a poster session. More information found on our website: *http://sense2synapse.com/ <https://urldefense.proofpoint.com/v2/url?u=http-3A__sense2synapse.com_&d=Dw…> * and you can register here: *http://www.sense2synapse.com/registrationForm <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.sense2synapse.com_r…>* Join us for a great day of science, discussions and nice food ! The organizing team Christoph Kirst Florian Berger Jeremie Barral Gonzalo Otazu Nicolas Renier -- Christoph Kirst Fellow for Physics and Biology Center for Theoretical Studies and Kavli Physics Fellow Kavli Neural Systems Institute The Rockefeller University 1230 York Avenue, New York, NY 10065 USA +1 212 327 7561 :: ckirst(a)rockefeller.edu

Jan. 24, 2017

LM2017 - Second Call for Papers, Satellite Events and Sponsors (7 weeks until submission deadline)

by INFO CSNETWORK, Bústia Compartida

**Apologies for crossposting** 2nd Call for Papers, Satellite Events and Sponsors Living Machines VI: The 6th International Conference on Biomimetic and Biohybrid Systems 25 – 28 July 2017 http://livingmachinesconference.eu/ <http://livingmachinesconference.eu/2017> Living Machines Conference | Home livingmachinesconference.eu Stanford will host Living Machines 2017! The 6th International Conference on Biomimetics and Biohybrid Systems will be hosted at Stanford University, California, US. To be hosted at Stanford University, Stanford, CA, USA Accepted papers will be published in Springer Lecturer Notes in Artificial Intelligence Submission deadline: March 10th, 2017 ______________________________________________________________ ABOUT LIVING MACHINES 2017 https://www.youtube.com/watch?v=WqPOCDh1FNw YouTube www.youtube.com and share it all with friends, family, and the world on YouTube. The development of future real-world technologies will depend strongly on our understanding and harnessing of the principles underlying living systems and the flow of communication signals between living and artificial systems. Biomimetics is the development of novel technologies through the distillation of principles from the study of biological systems. The investigation of biomimetic systems can serve two complementary goals. First, a suitably designed and configured biomimetic artefact can be used to test theories about the natural system of interest. Second, biomimetic technologies can provide useful, elegant and efficient solutions to unsolved challenges in science and engineering. Biohybrid systems are formed by combining at least one biological component—an existing living system—and at least one artificial, newly-engineered component. By passing information in one or both directions, such a system forms a new hybrid bio-artificial entity. The theme of the conference also encompasses biomimetic methods for manufacture, repair and recycling inspired by natural processes such as reproduction, digestion, morphogenesis and metamorphosis. The following are some examples of “Living Machines” as featured at past conferences: • Biomimetic robots and their component technologies (sensors, actuators, processors) that can intelligently interact with their environments. • Biomimetic computers—neuromimetic emulations of the physiological basis for intelligent behaviour. • Active biomimetic materials and structures that self-organize and self-repair. • Nature-inspired designs and manufacturing processes. • Biohybrid brain-machine interfaces and neural implants. • Artificial organs and body-parts including sensory organ-chip hybrids and intelligent prostheses. • Organism-level biohybrids such as robot-animal or robot-human systems. ACTIVITIES The main conference will take the form of a three-day single-track oral and poster presentation programme, 26th to 28th July 2017, hosted at Stanford University, California, USA. The conference programme will include five plenary lectures from leading international researchers in biomimetic and biohybrid systems, and the demonstrations of state-of-the-art living machine technologies. The full conference will be preceded by up to two days of Satellite Events hosted at Stanford University. SUBMITTING TO LIVING MACHINES 2017 We invite both full papers and extended abstracts in areas related to the conference themes. All contributions will be refereed and accepted papers will appear in the Living Machines Proceedings, published in the Springer-Verlag Lecture Notes in Artificial Intelligence. Full papers (minimum 8 pages, up to 12 pages) are invited from researchers at any stage in their career and should present significant findings and advances in biomimetic or biohybrid research. More preliminary work is better suited for short paper submission (minimum 4 pages, with a maximum of ten references and no more than three self-citations). Full papers will be accepted for either oral presentation (single track) or poster presentation with a short podium preview. Extended abstracts will be accepted for poster presentation only. Authors of the best full papers will be invited to submitted extended versions of their paper for publication in a special issue of the Taylor & Francis journal Connection Science. Satellite events Active researchers in biomimetic and biohybrid systems are invited to propose topics for full or half-day tutorials, symposia or workshops on related themes to be held on the 25th July at Stanford University. Attendance at satellite events will attract a small fee intended to cover the costs of the meeting. There is flexibility about the content, organisation, and budgeting for these events. Please contact us if you are interested in organising a satellite event! EXPECTED DEADLINES March 10th, 2017 Paper submission deadline April 28th, 2017 Notification of acceptance May 15th, 2017 Camera ready copy July 25th - 28th 2017 Conference SPONSORSHIP Organisations wishing to sponsor the conference in any way and gain the corresponding benefits by promoting themselves and their products through conference publications, conference events, and conference publicity are encouraged to contact the organisers to discuss the terms of sponsorship and necessary arrangements. We offer a number of attractive options to potential sponsors: http://livingmachinesconference.eu/about/ VENUE Living Machines 2017 will be hosted at Stanford University a world leading research University that this year celebrates its 125th anniversary. Stanford is located in California's Bay Area, one of the most intellectually dynamic and culturally diverse areas of the US. Organising Committee: Mark Cutkosky, Stanford University (Local Organizing Chair) Paul Verschure, Universitat Pompeu Fabra (Co-Chair) Tony Prescott, University of Sheffield (Co-chair) Michael Mangan, University of Lincoln (Programme Chair) Marc Desmulliez, Heriott Watt University, Scotland (Steering Committee) Anna Mura, Universitat Pompeu Fabra (Web and Communications) Nathan Lepora, University of Bristol (Communications)

Jan. 22, 2017

New JETCAS Special Issue: Low-Power, Adaptive Neuromorphic Systems: Devices, Circuit, Architectures and Algorithms

by Arindam Basu

Dear all ** Apologies for cross-posting Would like to draw your attention to a new Special issue in JETCAS on "Low-Power, Adaptive Neuromorphic Systems: Devices, Circuit, Architectures and Algorithms" that I am co-editing with colleagues. Manuscript submission deadline is on April 30, 2017. Look forward to receiving your contributions. IEEE JOURNAL ON EMERGING AND SELECTED TOPICS IN CIRCUITS AND SYSTEMS CALL for PAPERS Low-Power, Adaptive Neuromorphic Systems: Devices, Circuit, Architectures and Algorithms Guest Editors Full name Email Affiliation Arindam Basu* arindam.basu(a)ntu.edu.sg Nanyang Technological University Tanay Karnik tanay.karnik(a)intel.com Intel Hai Li hai.li(a)duke.edu Duke University Elisabetta Chicca chicca(a)cit-ec.uni-bielefeld.de Bielefeld University Meng-Fan Chang mfchang(a)mx.nthu.edu.tw National Tsing Hua University Jae-sun Seo jaesun.seo(a)asu.edu Arizona State University (* Corresponding) Scope and Purpose The recent success of “Deep neural networks” (DNN) has renewed interest in bio-inspired machine learning algorithms. DNN refers to neural networks with multiple layers (typically two or more) where the neurons are interconnected using tunable weights. Though these architectures are not new, availability of lots of data, huge computing power and new training techniques (such as unsupervised initialization, use of rectified linear units as the neuronal nonlinearity, regularization using dropout or sparsity, etc.) to prevent the networks from over-fitting have led to its great success in recent times. DNN has been applied to a variety of fields such as object or face recognition in images, word recognition in speech or even natural language processing and the success stories of DNN keep on increasing every day. However, the common training method in deep learning, such as back propagation, tunes the weights of neural networks based on the gradient of the error function, which requires a known output value for every input. It would be difficult to use such supervised learning methods to train and adapt to real-time sensory input data that are mostly unlabeled. In addition, training and classification phases of deep neural networks are typically separated, such that training occurs in the cloud or high-end graphics processing units, while their weights or synapses are fixed during deployment for classification. However, this makes it difficult for the neural network to continuously adapt to input or environment changes in real-world applications. By adopting unsupervised and semi-supervised learning rules found in biological nervous systems, we anticipate to enable adaptive neuromorphic systems for many real-time applications with a large amount of unlabeled data, similar to how humans analyze and associate sensory input data. Energy-efficient hardware implementation of these adaptive neuromorphic systems is particularly challenging due to intensive computation, memory, and communication that are necessary for online, real-time learning and classification. Cross-layer innovations on algorithms, architectures, circuits, and devices are required to enable adaptive intelligence especially on embedded systems with severe power and area constraints. Topics of Interest This special issue invites submissions relating to all aspects of adaptive neuromorphic systems across algorithms, devices, circuits, and architectures. Possible scalability to human brain-scale computing level with energy-efficient online learning is desired. Submissions are welcome in the following topics or other related topics: · Spin mode adaptive neuromorphics with devices such as spin transfer nano-oscillator, domain wall memory, tunneling magnetic resistance, inverse spin hall effect, etc. · Memristive technology based learning synapse and neurons · Neuromorphic implementations of synaptic plasticity, short-term adaptation and homeostatic mechanisms · Self-learning synapses (STDP and variants) and self-adaptive neuromorphic systems · High fan-in scalable interconnect fabric technologies mimicking brain-scale networks · Circuits and systems for efficient interfacing with post-CMOS memory based learning synapses · Design methodology and design tools for adaptive neuromorphic systems with post-CMOS devices · Algorithm, device, circuit, and architecture co-design for energy-efficient adaptive neuromorphic hardware Important Dates 1. Manuscript submissions due: April 30, 2017 2. First decision: July 15, 2017 3. Revised manuscripts due: August 15, 2017 4. Final Decision: October 15, 2017 5. Final manuscripts due: November 15, 2017 Request for Information Arindam Basu (arindam.basu(a)ntu.edu.sg<mailto:arindam.basu@ntu.edu.sg>) https://mc.manuscriptcentral.com/jetcas Best regards, Arindam ________________________________ CONFIDENTIALITY: This email is intended solely for the person(s) named and may be confidential and/or privileged. If you are not the intended recipient, please delete it, notify us and do not copy, use, or disclose its contents. Towards a sustainable earth: Print only when necessary. Thank you.

Jan. 21, 2017

ICMNS 2017: *Reminder, Abstracts Due Jan 31, 2017*

by Zachary Kilpatrick

This is a reminder that Abstract Submissions are due January 31, 2017 for the 3rd International Conference on Mathematical Neuroscience (ICMNS 2017), to be held at the Hotel Boulderado in Boulder, Colorado from May 30 to June 2, 2017. https://www.math.uh.edu/~zpkilpat/icmns2017/index.html <https://www.math.uh.edu/~zpkilpat/icmns2017/index.html> Meeting registration will open soon. Early Registration (Until March 31) will be $250 for students/postdocs, $350 for faculty, and $50 for tutorials. The International Conference on Mathematical Neuroscience will provide a forum for researchers to discuss current mathematical innovations emerging in neuroscience. A major aim of the conference is to attract and train young researchers on current methods in mathematical neuroscience. Abstract Submission: We encourage abstract submission by researchers from all areas of mathematical neuroscience. One page abstracts will be reviewed by a Program Committee and divided into three parallel talk sessions and a poster session. Details are given here: https://www.math.uh.edu/~zpkilpat/icmns2017/submissions.html <https://www.math.uh.edu/~zpkilpat/icmns2017/submissions.html> Student Travel Awards: This year, we will offer student travel awards, due to the generous support from NSF, SIAM, Burroughs Wellcome, and the University of Colorado. To apply, students must submit an abstract and include a current CV as part of their submitted document in Easychair. Confirmed Speakers Danielle Bassett (University of Pennsylvania) Paul Bressloff (University of Utah) Nicolas Brunel (University of Chicago) Sophie Deneve (École Normale Supérieure) Brent Doiron (University of Pittsburgh) Marla Feller (University of California, Berkeley) Ila Fiete (University of Texas) Stefano Fusi (Columbia University) Peter Thomas (Case Western Reserve University) Taro Toyoizumi (Riken Brain Science Institute) Tutorial Speakers: Paul Bressloff, Sophie Deneve, Brent Doiron, Stefano Fusi, Joel Zylberberg (University of Colorado, School of Medicine) Program Committee https://www.math.uh.edu/~zpkilpat/icmns2017/committees.html <https://www.math.uh.edu/~zpkilpat/icmns2017/committees.html> We hope to see you in Boulder this May! All the best Zachary Kilpatrick (University of Colorado) Julijana Gjorgjieva (Max Planck Institute for Brain Research) Robert Rosenbaum (University of Notre Dame)

Jan. 20, 2017

Fruit Fly Brain Hackathon 2017

by Yiyin Zhou

Fruit Fly Brain Hackathon 2017 FFBH 2017 <http://www.bionet.ee.columbia.edu/hackathons/ffbh/2017>March 12, 2017Columbia University, New York, NY 10027 We are pleased to announce the 2nd Fruit Fly Brain Hackathon (FFBO 2017). This hackathon will feature the Fruit Fly Brain Observatory (FFBO) and its key components NeuroNLP and NeuroGFX. The former allows for exploring fruit fly brain data using plain English queries, and the latter facilitates the modeling and execution of such brain circuits. Brief tutorials will be given on the usage of the FFBO as well as developing new tools/features in FFBO. The hackathon is aimed at three main groups of participants: neurobiologists, modelers and software engineers. The goal of the hackathon is to bring together these three groups of participants to create new ideas to develop, use and improve the FFBO platform towards developing executable model of the fruit fly brain. The Fruit Fly Brain Hackathon is organized in conjunction with the Columbia Workshop on Brain Circuit, Memory and Computation on March 13-14, 2017. Participants of the hackathon are welcome to attend the workshop. Registration is free but all participants have to register <https://ffbo17.eventbrite.com/> (*https://ffbo17.eventbrite.com/ <https://ffbo17.eventbrite.com/>*). Organizers: Paul Richmond, Department of Computer Science, University of Sheffield Adam Tomkins, Department of Automatic Control and Systems Engineering, University of Sheffield Nikul Ukani, Department of Electrical Engineering, Columbia University Chung-Heng Yeh, Department of Electrical Engineering, Columbia University Yiyin Zhou, Department of Electrical Engineering, Columbia University More information can be found on the hackathon website: http://www.bionet.ee.columbia.edu/hackathons/ffbh/2017 ------------------------------------------------------------ ------------------ Best Regards, Yiyin Zhou, on behalf of the organizers

Jan. 19, 2017

Postdoc in Medical Data Science

by Philipp Berens

The lab of Philipp Berens (www.berenslab.org) at the Institute for Ophthalmic Research (www.eye-tuebingen.de) at the Eberhard-Karls-University Tübingen is offering a position as Postdoctoral Researcher in _Medical Data Science for Ophthalmology_ to be filled as soon as possible, with funding for up to 4 years. The successful candidate will perform research at the interface of data science and medicine with the goal to advance statistical methods for predicting disease onset or identifying risk factors by combining classical epidemiological approaches with recent developments in deep learning. The work will be done in close collaboration with the lab of Marius Ueffing and the ZEISS Vision Lab at the Institute for Ophthalmic Research and will contribute to a better understanding of ophthalmic diseases such as diabetic retinopathy or macular degeneration. The Berens lab conducts research in computational neuroscience, data science and biostatistics with a focus on developing tools to integrate various data sources. We have recently developed a framework based on deep neural networks for detecting diabetic retinopathy from fundus images modeling the decision uncertainty of the classifier (https://doi.org/10.1101/084210) Tübingen is home to a vibrant machine learning community with ample opportunity for interaction with researchers at both the University as well as the Max Planck Institute for Intelligent Systems. The Institute of Ophthalmic Research is part of the Center of Ophthalmology, covering various aspects of ophthalmic research from basic retinal neuroscience to the development of gene therapy and neuroprosthetics. We offer employment with a salary and social benefits based on the collective agreement for public service employees in the academic and science sector, TV-L. The Eberhard-Karls-University of Tübingen promotes gender equality and therefore particularly encourages female scientists to apply. Preferential status will be given to handicapped persons, if equally qualified. Requirements: • PhD in machine learning, statistics or related fields • Experience with medical data • Programming experience in Python and R • Strong publication record and scientific independence Interested applicants should contact Dr. Philipp Berens (philipp.berens(a)uni-tuebingen.de) providing a curriculum vitae, a one-page description of past research experience & future research interests, a one-page description of the motivation for applying to this position and names of at least two people that could provide letters of reference. Please compile your application in one single PDF-file and add [Data Science Postdoc] to the subject line. -- University of Tübingen Institute for Ophthalmic Research http://www.berenslab.org NEW PHONE NUMBER: +49-7071-2988833

Jan. 19, 2017