- Comp-neuro - lists.cnsorg.org

TR: Master Internship

by DEPANNEMAECKER Damien

Hi, Could you distribute this announcement to your students? Thanks a lot! We are seeking 3 master's students to systematically evaluate Virtual Epilepsy Patients (VEP). The VEP workflow employs computational models and machine learning techniques to estimate epileptogenic networks and assist in surgical strategies. In this context, the computational models are personalized whole-brain network models based on the patient's recorded data. VEP represents the first well-established instance of applying the concept of virtual brain twins in a clinical trial, called Epinov. Our team is a world leader in advancing the concept of virtual brain twins. Three topics: 1. Systematic investigation of the sensitivity of the VEP in terms of electrode locations. 2. Systematic investigation of the robustness of the VEP in terms of data features. 3. Systematic investigation of the robustness of the VEP in terms of the size of the windows of seizure analysis. About the ideal candidates: * A strong grasp of mathematics, physics, neuroscience, and computer science, or a genuine enthusiasm for cultivating these skills, is essential. * The ability to quickly acquire proficiency in new computational tools is important, and we will offer comprehensive guidance to support your learning. * Proficiency in coding is a fundamental skill. * Ideally, you are a Master 2 student and would like to complete your 6-month internship in our laboratory. * An added advantage would be a strong motivation to pursue a career in scientific research and aspire to become a Ph.D. candidate. What you will gain at the end of the training (internship): 1. You will have a clear understanding of the concept of virtual brain twins and how to use personalized modeling for clinical applications. 2. You will acquire knowledge of computational modeling. 3. You will become familiar with the various multidisciplinary approaches and perspectives in mathematics, physics, neuroscience, computer science, and medicine. 4. You will develop the ability to conduct systematic analysis. 5. You will be proficient in using VEP pipelines, which integrate numerous analysis and data preprocessing tools and models, and you will also gain the capability to add additional modules. To apply, please send your CV with 2 reference letters and a cover letter to: Huifang Wang, huyfang.wang(a)univ-amu.fr<mailto:huyfang.wang@univ-amu.fr> and Damien Depannemaecker, damien.depannemaecker(a)univ-amu.fr<mailto:damien.DEPANNEMAECKER@univ-amu.fr>

Nov. 3, 2023

NEXTEN Conference

by Goodhill, Geoffrey

NEXTEN: Envisaging Theoretical and Computational Neuroscience for the next 10 years May 16-17, 2024 Washington University in St Louis nexten.wustl.edu Theoretical/Computational Neuroscience is currently undergoing a phase of unprecedented growth. Dramatic advances in the ease with which large-scale datasets of behavior, neural activity, connectomic and gene expression information can be collected have coincided with a revolution in the capabilities of Artificial Intelligence-based algorithms to interrogate such datasets. Concurrently, these new datasets are inspiring exciting new developments in mathematical tools for extracting their underlying structure and relationships. What is the current state of the art in our theoretical/computational understanding of the brain, and what does the future hold? You are invited to join an exciting line-up of leaders in the field to address these questions. Confirmed speakers include Adam Kepecs (WashU) Mackenzie Mathis (EPFL) Terry Sejnowski (Salk Institute) Andreas Tolias (Baylor College of Medicine) Richard Zemel (Columbia University) Abstract submissions for posters are encouraged, and some of these will be selected for short talks. Some travel awards will be available for qualified trainees. The conference is sponsored by the Center for Theoretical and Computational Neuroscience at Washington University in St Louis (ctcn.wustl.edu) It will be held in the new 600,000 sq ft Neuroscience Research Building on the WashU Medical School campus, into which ~100 neuroscience labs have recently moved. The deadline for registration and abstract submission is Wednesday, February 28, 2024. However, due to the size of the auditorium total registrations are limited to 150, and so registration may close earlier than Feb 28 if this limit is reached. Registration and abstract submission will open in January 2024. Please direct any questions to ctcn(a)wustl.edu Professor Geoffrey J Goodhill Departments of Developmental Biology and Neuroscience Director, Center for Theoretical and Computational Neuroscience (ctcn.wustl.edu) Washington University School of Medicine 660 S. Euclid Avenue St. Louis, MO 63110 g.goodhill(a)wustl.edu https://neuroscience.wustl.edu/people/geoffrey-goodhill-phd

Nov. 3, 2023

Pre- or post-doc position available at the Austrian Academy of Sciences in Vienna

by Robert Baumgartner

Dear colleagues, I am currently looking for an enthusiastic researcher to join a highly interdisciplinary team investigating „Dynamic Auditory Predictions in Human and Non-human Primates (Dynamates <https://www.oeaw.ac.at/en/ari/dynamates>)". The project rests on a strong collaboration between cognitive neuroscience, cognitive biology, and computational modeling. The candidate’s main task will be to perform cutting-edge model-based analyses of neurobehavioural data (psychophysics + EEG + eyetracking) that we already collected. The position is to be filled for one year and is available immediately, but open until a suitable candidate is found (1st round of evaluation will start on Nov 22). For pre-doc applications, all details can be found here: https://www.oeaw.ac.at/en/ari/ari/about-ari/news-1/project-scientist-positi… For post-doc applications, follow this link instead: https://www.oeaw.ac.at/en/ari/ari/about-ari/news-1/postdoc-position-f-m-x-f… Please distribute and don’t hesitate to contact me if you have any questions about this position! Very best, Robert — Robert Baumgartner, PhD Senior Research Associate Auditory Cognitive Neuroscience Institut für Schallforschung | Acoustics Research Institute Österreichische Akademie der Wissenschaften | Austrian Academy of Sciences Wohllebengasse 12-14, 1040 Wien, Österreich | Vienna, Austria

Nov. 3, 2023

Faculty opening in Georgia Tech ECE

by Rozell, Christopher J

Hello Comp Neuro! Please share this widely. Georgia Tech’s School of Electrical and Computer engineering (ECE) is hiring faculty in bioengineering with a preference for candidates aligned with an emerging institute for neuroscience, neurotech and society: https://b.gatech.edu/3QIvgnZ. Application review starts Dec 15. The job ad is here: https://bit.ly/3QIUaU8 Even if you're not a traditional ECE, consider applying if you work in topics such as neuroengineering or computational neuroscience. The search is open to all areas, including biosensing, bioelectronic interfacing, imaging, biomedical data analysis and computational modeling. The neuro community in ATL is incredible, combining cutting edge interdisciplinary research with a highly collaborative and friendly culture. There’s a particularly strong computational neuroscience community here. GT is making major investments in growing neuro, and plans to launch a novel PhD program in Neuroscience & Neurotechnology next year. ECE at GT has a long history of applying engineering principles to biotech problems. Faculty share strong collaborations with colleagues developing cutting edge foundational technologies and local clinical partners (e.g., Schools of Medicine at Emory University and Morehouse). Overall, I love working at GT (and especially ECE). Local colleagues are friendly and helpful. GT is ambitious, growing and supportive. Collaboration opportunities are abundant. And the technical expertise is top shelf....there are local experts in any area you need. I also love living in ATL. It is a diverse and vibrant city full of distinct neighborhoods. It's affordable and an easy travel hub. It's a green city that's great for outdoor activity. The food and arts culture is quite good. The weather is temperate much of the year. Come be my colleague! I'm happy to answer any questions. Share with anyone who might be interested. Regards, chris

Nov. 2, 2023

Postdoctoral Research Position at the Australian National University

by Michael McCullough

Jubilee Joint Associate (Postdoctoral Research Fellow) in Computational Neuroscience and AI @ The Australian National University To apply visit: https://jobs.anu.edu.au/jobs/jubilee-joint-associate-postdoctoral-research-… The John Curtin School of Medical Research and the School of Computing at the Australian National University are seeking a Postdoctoral Research Fellow for joint appointment of up to 3 years to work in the areas of computational neuroscience and artificial intelligence. The successful candidate will hold the title of Jubilee Joint Associate and work under the supervision of Jubilee Joint Fellow Dr Michael McCullough in the Computational Neuroscience Group within the Eccles Institute of Neuroscience and Computational Science Cluster within the School of Computing. The Jubilee Joint Associate will undertake independent research within one or more of the following themes: * Topological structures and dynamics of brain activity on neural manifolds. * Network neuroscience and the brain as a complex system. * Computational ethology and modelling behavioural sequences. This is an exciting opportunity to start building research independence, work at the interface of two rapidly evolving fields, and collaborate with leading experts in neuroscience, biomedicine and computer science. For further information, please contact Dr Michael McCullough at michael.mccullough(a)anu.edu.au About You Our ideal candidate will have completed a PhD (or is expecting to be awarded a PhD within six months of appointment commencement) in computational neuroscience, computer science, mathematics, physics, or equivalent qualifications and experience in a related area. Applicants should have an emerging track record of research in the fields of computational neuroscience, artificial intelligence, computational biology or complex systems as evidenced by peer-reviewed publications and conference presentations. Experience in student supervision and mentoring is desirable but not essential. About the John Curtin School of Medical Research The John Curtin School of Medical Research is a leading centre of medical research in Australia. Researchers have a tradition of excellence in addressing the world’s most pressing biomedical issues. The Eccles Institute of Neuroscience is an internationally recognised research institute based in the John Curtin School of Medical Research dedicated to understanding the brain and nervous system. The Institute is home to a diverse community of independent research groups, with a focus on cellular and synaptic physiology, sensory physiology, retina, and muscle. About the School of Computing The School of Computing has a strong foundation in computing and information sciences at ANU. We are a transformative centre for research in artificial intelligence and machine learning, computer systems and software, and theoretical foundations of computing. We span traditional and modern thinking, connecting decades of computer science methodologies with modern data and computational science. Our mission is motivated by the need to design, drive and sustain strategic activities via five broad focus areas: Computing Foundations, Computational Science, Intelligent Systems, Data Science and Analytics, and the Software Innovation Institute. Be part of an innovative and forward-looking intellectual agenda, built on a diverse, inclusive culture. The ANU provides attractive benefits and excellent support to maintain a healthy work/life balance and offers generous remuneration benefits, including four weeks paid vacation per year, assistance with relocation expenses and 17% employer contribution to superannuation. This also includes generous parental leave, the possibility of flexible and part time working arrangements, a parental and aged care support program, dual career hire programs, ANU school holiday programs, and childcare facilities on campus. For more information, visit: https://services.anu.edu.au/human-resources Applicant Information In order to apply for this role you will need to upload the following documents via the ANU Jobs portal with your application: A detailed curriculum vitae (CV) including a full publication list and the names and contact details of at least three referees (preferably including a current or previous supervisor). If your CV does not include referees, you can complete these online when prompted in the application form. A statement addressing the selection criteria. A 1-2 page statement outlining a proposed research project. --- Michael H McCullough, PhD [he/him/his] Jubilee Joint Fellow School of Computing & Eccles Institute of Neuroscience, John Curtin School of Medical Research The Australian National University Canberra ACT 2600

Nov. 1, 2023

MindCORE Fellow applications at Penn due Dec. 3

by Maria Geffen

MindCORE Research Fellowship for Postdoctoral Scholars MindCORE <https://mindcore.sas.upenn.edu/> (Mind Center for Outreach, Research, and Education) seeks to recruit outstanding postdoctoral researchers for our Postdoctoral Fellowship. Housed within the School of Arts & Sciences of the University of Pennsylvania, MindCORE is an interdisciplinary effort to understand human intelligence and behavior. Designed for individuals who have recently obtained a PhD degree in neuroscience, psychology, linguistics, philosophy, computer science, or other cognitive science discipline, the MindCORE Fellowship is a springboard for early researchers as they establish their own research program. Fellows are expected to pursue collaborative relationships with faculty working across disciplines at Penn, including faculty in computational neuroscience <https://cni.upenn.edu/people>. These collaborations may take different forms from engaging in research projects with multiple faculty independently, to generating new collaborative research that brings multiple faculty together, to contributing to interdisciplinary discussion and reading groups. Find a list of current and former MindCORE Fellows here <https://mindcore.sas.upenn.edu/people/>. MindCORE awards ~2 postdoctoral Fellowships per year. Positions may start as early as July 1, 2023. Benefits Fellows receive a competitive salary, relocation allowance, health insurance, plus a $20,000 research budget. Fellows also benefit from access to the greater community of academics including visiting scholars plus leading research facilities equipped with cutting-edge instrumentation all on an urban campus in a vibrant city. Fellows are invited to join regular working group meetings within their field plus career development workshops aimed at young researchers, and will be provided with a mentoring committee. Funding is provided in one-year terms renewable for up to three years. This is campus-based (not remote) position. Eligibility & Application · Applicants must have formally completed all requirements of the PhD degree and provide a copy of their diploma at the time of appointment. Penn has a five-year term limit for postdocs, so candidates ideally have 0-2 years of previous postdoc time. · Candidates must submit 1-2 page research statement that identifies at least three MindCORE faculty at Penn(https://mindcore.sas.upenn.edu/people/faculty-and-associates/ <https://mindcore.sas.upenn.edu/people/faculty-and-associates/>) with whom the applicant would be interested in collaborating, along with a CV, contact information for two referees, and a cover letter with a 1-2 paragraph diversity statement that includes past experiences and activities, and future plans to advance diversity, equity, and inclusion at Penn. Applicants should be mindful of the interdisciplinary backgrounds of the reviewers and make the proposals clear to readers. · Application documents should be saved with candidate’s Lastname_Firstname.pdf in one PDF file in this order: cover letter, research statement, CV, referees (name, affiliation, email address). Complete applications should be submitted through the form on our website:https://web.sas.upenn.edu/mindcore/post-doctoral-research-fellowshi… <https://web.sas.upenn.edu/mindcore/post-doctoral-research-fellowship/>. Questions not answered on our FAQ <https://urldefense.com/v3/__https:/bpb-us-w2.wpmucdn.com/web.sas.upenn.edu/…>, can be emailed to pennmindcore(a)sas.upenn.edu <mailto:pennmindcore@sas.upenn.edu>. · Applications due December 3, 2023. Selection All eligible and complete applications will be evaluated by the Selection Committee and are judged on the following criteria: · Scientific excellence · Potential to contribute to or lead within diverse community · Scientific match and interdisciplinarity · Career potential ______________________________ Maria N. Geffen, Ph.D. (she/her) Professor Department of Otorhinolaryngology Department of Neuroscience Department of Neurology Co-Director, Computational Neuroscience Initiative Stemmler Hall G14 3450 Hamilton Walk Philadelphia PA 19104 (215)898-0782 mgeffen(a)pennmedicine.upenn.edu <mailto:mgeffen@pennmedicine.upenn.edu> My zoom room <https://pennmedicine.zoom.us/my/mgeffen?pwd=eWVFbUJFUGRJZ3g1eU9YZEZic2VwZz09> Follow me @geffenlab@mastodon.world <https://mastodon.world/@geffenlab> http://hosting.med.upenn.edu/hearing <http://hosting.med.upenn.edu/hearing> Twitter: @neimarkgeffen <http://twitter.com/neimarkgeffen>

Nov. 1, 2023

Tenure-track position at UT Austin

by Weatherly, Christopher J

The Department of Neuroscience<https://neuroscience.utexas.edu/> at The University of Texas at Austin invites applications for a tenure-track faculty position at the rank of Assistant Professor. We seek outstanding candidates with innovative research proposals in all areas of neuroscience to build upon existing strengths in the fields of learning and memory, computational and theoretical neuroscience, cellular and sensory systems, addiction, developmental neuroscience, biophysics, and synaptic plasticity. This position comprises a highly competitive salary and start-up funds. We expect new faculty to develop and maintain an ambitious research program within a vibrant and collegial academic environment. The department values candidates who have demonstrated a commitment to student and trainee mentorship. Ranked among the top ten public universities and the flagship campus of The University of Texas System, UT Austin is distinguished by a world-class faculty engaged in highly collaborative and interdisciplinary research among programs in Neuroscience, Psychology, Computer Science, Statistics, Mathematics, Engineering, Physics, Chemistry, and Molecular Biosciences. Close ties with the new Dell Medical School provide additional opportunities for collaboration with translational researchers in Neurology, Neurosurgery, and Psychiatry. Full job posting: https://faculty.utexas.edu/career/122847 --- Christopher Weatherly Executive Assistant to Robert Messing, MD Department of Neuroscience - The University of Texas at Austin

Oct. 31, 2023

Call for Participation COMPLEX NETWORKS 2023 Menton France November 28 - 30, 2023

by Hocine Cherifi

*12th** International Conference on Complex Networks & Their Applications* *Menton Riviera* <https://www.menton-riviera-merveilles.co.uk/>*, France *November 28 - 30, 2023 COMPLEX NETWORKS 2023 <http://www.complexnetworks.org/> *Registration:* https://complexnetworks.org/registration/ *See the detailed program at :* https://complexnetworks.org/program/ *KEYNOTE SPEAKERS* Michael Bronstein <https://www.cs.ox.ac.uk/people/michael.bronstein/>* - *Univ. of Oxford UK - *Physics-inspired Graph Neural Networks* <https://complexnetworks.org/keynote-speakers-3/> Kathleen Carley <https://www.cylab.cmu.edu/directory/bios/carley-kathleen.html> - Carnegie Mellon Univ. USA - *Coupling in High Dimensional Networks* <https://complexnetworks.org/keynote-speakers-3/> Manlio De Domenico <https://manliodedomenico.com/> Univ. of Padua Italy: *An Emerging Framework for the Functional Analysis of Complex* <https://complexnetworks.org/keynote-speakers-3/>* Interconnected Systems* Danai Koutra <http://web.eecs.umich.edu/~dkoutra/> - Univ. of Michigan USA - *Advances in Graph Neural Networks: Heterophily and Beyond* <https://complexnetworks.org/keynote-speakers-3/> Romualdo Pastor-Satorras <http://www.fen.upc.edu/~romu/> - UPC Spain - *Opinion Depolarization in Interdependent Topics and the Effects of Heterogeneous Social Interactions* <https://complexnetworks.org/keynote-speakers-3/> Tao Zhou <https://scholar.google.com/citations?user=MXgWgmEAAAAJ&hl=en> - USTC China - *Recent Debates in Link Prediction* <https://complexnetworks.org/keynote-speakers-3/> *TUTORIALS (November 27, 2023)* Tiago de Paula Peixoto <https://skewed.de/tiago> - CEU Vienna Austria - *Network Inference and Reconstruction* <https://complexnetworks.org/tutorials/> Maria Liakata <https://www.turing.ac.uk/people/researchers/maria-liakata> - Queen Mary University of London UK - *Longitudinal language processing from user generated content* <https://complexnetworks.org/tutorials/> Best regards, and looking forward to seeing you at COMPLEX NETWORKS 2023. Hocine Cherifi, Luis M. Rocha COMPLEX NETWORKS 2023 General Chairs Join us at COMPLEX NETWORKS 2023 <https://www.complexnetworks.org/> *-------------------------* Hocine CHERIFI University of Burgundy Franche-Comté Laboratoire* I*nterdisciplinaire *C*arnot de *B*ourgogne - ICB UMR 6303 CNRS Editor in Chief Applied Network Science <https://appliednetsci.springeropen.com/> Plos Complex Systems <https://plos.org/complex-systems-research-journal/#:~:text=PLOS%20Complex%2….> Editorial Board member PLOS One <https://journals.plos.org/plosone/>, IEEE ACCESS <https://ieeeaccess.ieee.org/?http%3A%2F%2Fieeeaccess_ieee_org%2F>, Scientific Reports <https://www.nature.com/srep/>, Journal of Imaging <https://www.mdpi.com/journal/jimaging>, Quality and Quantity <https://www.springer.com/journal/11135/>, Computational Social Networks <https://computationalsocialnetworks.springeropen.com/>, Complex Systems <https://www.complex-systems.com/>

Oct. 31, 2023

Correction: faculty positions in Comp. Neuro & in Complex Systems at UC Davis

by Mark Steven Goldman

Thanks to the community for identifying the website error for the 2 faculty positions at UC Davis (and apologies to those receiving this extra email). The corrected application sites are below: Cognitive Computational Neuroscience: https://recruit.ucdavis.edu/JPF06093 Physics of Complex Systems: https://recruit.ucdavis.edu/JPF06057 Best regards, Mark Goldman

Oct. 31, 2023

NSG Workshop at SfN2023: Neuroscience Gateway (NSG) - Software Dissemination, Large Scale Modeling, Data Analysis on Supercomputers Satellite Workshop - 2023 Society for Neuroscience Annual Meeting

by Majumdar, Amitava

Please join us at the workshop titled: "Neuroscience Gateway - Software Dissemination, Large-Scale Neuronal Modeling, Data Processing on Supercomputers", at SfN2023. Workshop date/time: November 11, 2023; 8:30am - 12:30pm Location: George Washington University, B1220, Science and Engineering Hall, 800 22nd St NW, D.C. https://www.seas.gwu.edu/science-and-engineering-hall There is no charge to attend the workshop but given the limited space, we are requiring interested attendees to please register. Full agenda, with title of talks, speakers, abstracts etc. and link to the registration page is here: https://www.nsgportal.org/SfN2023_NSGWksAgendaWLogo.htm List of talks and speakers: Title: Human Neocortical Neurosolver: A Software Tool for Cell and Circuit Level Interpretation of MEG/EEG signals Stephanie Jones, Nicholas Tolley, Dept of Neuroscience, Brown University Title: NIH BRAIN Initiative (Part I): The convergence of modeling and data science in the NIH BRAIN Initiative Grace C.Y. Penga, Susan N. Wrightb, Hermon Gebrehiwetc NIH BRAIN Initiative (aNational Institute of Biomedical Imaging and Bioengineering (NIBIB), bNational Institute on Drug Abuse (NIDA), c National Institute of Neurological Disorders and Stroke (NINDS) Title: NIH BRAIN Initiative (Part II): Data science across the NIH BRAIN initiative brain circuits projects Manuel Schottdorf1, Guoqiang Yu2, Edgar Y. Walker3 NIH U19 Data Science Consortium (1Princeton, 2Virginia Tech, 3University of Washington) Title: Modeling the development of the visual system: computational challenges vs high-performance computing Ruben A Tikidji-Hamburyan and Matthew T. Colonnese, Department of Pharmacology and Physiology, The George Washington University, Washington D.C., United States Title: NIC: An integrated neuroinformatics tool for studying brain interaction dynamics in neurological disorders Authors: Katrina Prantzalos1, Dipak Upadhaya1, Shafiabadi N1, Gurski N1, Fernandez-BacaVaca G1, Yoshimoto K2, Sivagnanam S2, Majumdar A2, Sahoo SS1 1Case Western Reserve University, University Hospitals Cleveland Medical Center; 2San Diego Supercomputing Center/University of California San Diego Title: Whole brain connectome models mapping brain structure to function to study lifespan ageing and neurological diseases Arpan Banerjee1, Suman Saha1, Samuel Berkins1, Anagh Pathak1, Neeraj Kumar1, Priyanka Chakraborty1, Varun Madan Mohan1, Anirudh Vattikonda1, Amit Naskar1, Dipanjan Roy1,2 1. National Brain Research Centre, NH 8 Manesar, Gurugram 122052, India 2. Indian Institute of Technology Jodhpur, NH 62, Jodhpur, India Title: The role of computational models in experimental research: predictive vs. explanatory power Sherif M. Elbasiouny1,2 and Mohamed H. Mousa1 1Department of Neuroscience, Cell Biology, and Physiology, Boonshoft School of Medicine and College of Science and Mathematics Wright State University, Dayton, OH, United States 2Department of Biomedical, Industrial, and Human Factors Engineering, College of Engineering and Computer Science Wright State University, Dayton, OH, United States Best regards. Workshop Organizers Amit Majumdar, Subha Sivagnanam, Kenneth Yoshimoto, University of California San Diego Ted Carnevale, Yale University

Oct. 31, 2023