- Comp-neuro - lists.cnsorg.org

PhD opening in the neural mechanisms of decision making

by Simon Kelly

Applications are invited for a fully funded 4-year PhD position in the Cognitive Neural Systems lab (https://cogneusys.com/) led by Simon Kelly, to study the neural mechanisms of decision making. This position is part of a project funded by Science Foundation Ireland, which involves a combination of psychophysics, computational modelling, non-invasive electrophysiology of human brain and muscle, and analyses of existing single-cell neurophysiological data. The funded research is specifically focused on the impact of value (i.e., how much decision outcomes are worth) on the dynamics of decision formation in sensory, decision, and motor areas of the brain. However, the overall PhD can be significantly broader in scope (including e.g. biomedical/translational applications), depending on the student’s interests within the broader research themes of the lab. The Cognitive Neural Systems lab is situated within the School of Electrical and Electronic Engineering in University College Dublin, Ireland, and has strong collaborative links to basic cognitive and clinical neuroscience research groups both locally (e.g. Trinity College Institute of Neuroscience) and internationally (e.g. City College and Columbia University in New York). The successful applicant will have ample opportunities for wider collaborations and the learning of a broad range of experimental, conceptual, analytic and computational skills. Applicants should have a BSc/B.E. or Masters degree in neuroscience, psychology, Electrical/biomedical engineering, computer science, or other related discipline and a demonstrable interest in cognitive neuroscience. The ideal candidate will be highly motivated and have excellent communication skills. Any prior experience in programming, psychophysics, EEG and/or modelling, especially in the area of cognitive neuroscience, is a definite advantage. To apply, submit a CV, short cover letter and contact information for at least two referees to Dr Simon Kelly (simon.kelly(a)ucd.edu) Candidates should explain in their cover letter how their own research interests fit specifically with those of the Kelly lab. ----------------------------------------------------------- Simon Kelly, Ph.D. Associate Professor School of Electrical and Electronic Engineering University College Dublin t: +353 (1) 716 1803 e: simon.kelly(a)ucd.ie -----------------------------------------------------------

Feb. 22, 2017

We have a wide range of posts open in Fudan Univ.

by jianfeng feng

http://www.nature.com/naturejobs/science/jobs/606495-senior-research-fellow… -- -------------------------------------- J. Feng, Prof. of Biology, Computer Science, Medicine and Mathematics Warwick University, UK http://www.dcs.warwick.ac.uk/~feng Fudan University, PR China http://ccsb.fudan.edu.cn/

Feb. 22, 2017

Postdoc and PhD student for project on deep learning in artificial, human, and rodent brains

by Hans Op de Beeck

Postdoc and PhD student for project on deep learning in artificial, human, and rodent brains For a project combining the domains of human functional neuroimaging, computational modelling, and rodent physiology, we are looking for two new collaborators. Hirings can be at the level of postdoc as well as PhD student. First, we look for a scientist to implement and further develop deep neural network modelling. The aim is to compare the representations in these artificial networks over the course of training with neural responses in human and rodent cortex. Here we build upon earlier work such as Kubilius et al. (2016, PLOS Comput. Biology). Candidates should have a background in computational neuroscience, computer vision, artificial intelligence, or related fields. Second, we look for a scientist to study the cortical basis of visual learning in awake rodents through extracellular recordings using electrode arrays. Relevant earlier studies from our lab in this domain are Vinken et al. (2014, J. Neurosci.) and Vinken et al. (2016, Cerebral Cortex). Candidates should have a background in Neurobiology, Neuroscience, Psychology, Biomedical sciences, Bioengineering or a related field. Independent of career stage (so also for incoming PhD students), only candidates will be considered that have a quantitative and computational background including expertise with Matlab, good social skills and team spirit, and good communication skills in English (oral and written). For PhD students, we expect a competitive study record putting the student among the top students in an internationally competitive program. For postdocs, we expect a relevant and competitive publication record (e.g., in computational and systems neuroscience) including first-author peer-reviewed publications. The research will be implemented in the research group of Hans Op de Beeck in the Laboratory of Biological Psychology at the University of Leuven (KU Leuven, Belgium). The research group focuses upon multidisciplinary work, including human neuroscience research with functional magnetic resonance imaging, rodent behaviour & electrophysiology, and computational modelling. Many members of the group come from countries outside Belgium (e.g., Canada, Brasil, South-Korea, Italy, Belarus), and the professional language is English. The city of Leuven is an old, medieval city which is very lively thanks to a large population of students and researchers. Leuven is at 25 km from Brussels, with frequent direct train connections, also to the international airport of Brussels (20 minutes by train). The university is one of the oldest in the Low Countries (founded in 1425) and is ranked in the top 50 of universities worldwide (THE ranking). It is home to a large community of systems/cognitive/visual/computational neuroscientists. Applications should be submitted before March 8th 2017. Funding is available for up to 3 (postdoc) or 4 (PhD student) years. The starting date is flexible between May and October 2017. Informal queries for further information can be sent to hans.opdebeeck(a)kuleuven.be<mailto:hans.opdebeeck@kuleuven.be> . For the formal application, applicants should go to https://icts.kuleuven.be/apps/jobsite/vacatures/54073261. The site will ask for a motivation letter (please include contact information for 2 references) and a CV (please include a list of publications if applicable). --- Prof. Dr. Hans P. Op de Beeck Professor in Brain & Cognition Program Director of KU Leuven Bachelor Psychology Laboratory of Biological Psychology University of Leuven (KU Leuven), Belgium Tiensestraat 102, 3000 Leuven, Belgium Email: hans.opdebeeck(a)kuleuven.be<mailto:hans.opdebeeck@kuleuven.be> Website: http://ppw.kuleuven.be/home/english/research/lbp/lbpMembers/00029058

Feb. 22, 2017

Connectomics. Advanced Course. Siena, Tuscany April 22-29, 2017

by Francesca Martini/NSAS

Dear All, The last few seats remain for: Advanced Course Connectomics Neuroscience School of Advanced Studies Certosa di Pontignano, Siena, Tuscany April 22-29, 2017 <http://www.nsas.it/courses-workshops/advanced-courses/connectomics/> http://www.nsas.it/courses-workshops/advanced-courses/connectomics/ Coordinator: Sean Hill École Polytechnique Fédérale & The Blue Brain Project, Lausanne, Switzerland Faculty include: Julie Harris, Allen Institute for Brain Science, Seattle. USA Michael Milham, Child Mind Institute, New York, USA Fabrizio de Vico Fallani, Inria & Institut du Cerveau et de la Moelle, Paris, France Patric Hagmann, University of Lausanne, Switzerland Marcello Massimini, University of Milan, Italy Viktor Jirsa, Aix-Marseille University, France Sean Hill, École Polytechnique Fédérale & The Blue Brain Project, Lausanne, Switzerland This Advanced Course will focus on multi-scale aspects of the connectome the comprehensive wiring diagram of the brain and its impact on brain function, behavior and health. Ion channels, receptors, cells and synapses breathe dynamics into this wiring diagram and give rise to sensory responses, perceptions, decisions, memories and actions. When we fall into a deep dreamless sleep, our connectome doesnt change, nor does it change when we experience the vivid hallucinations of dreams. Yet it is the substrate of human experience disrupting the connectome gives rise to neurological deficits or disorders. Emphasis will be placed on the latest techniques of large-scale data acquisition, analysis, theory, modeling and simulation. The Advanced Course will cover 1) the cellular basis of connectivity including gene expression, morphology and electrophysiology, 2) large-scale data gathering and data analysis of whole brain connectivity across scales including electron microscopy, single neurons, meso-scale viral tracers, diffusion and functional whole brain imaging; 3) data integration of multimodal connectome data; 4) data-driven computational modeling and simulation at different scales of brain circuitry; 5) theoretical analyses of brain network topology and principles of connectivity; 6) the development of the connectome and its link to behavior and neurological disorders; 7) predicting whole brain dynamics from the connectome; 8) wakefulness, sleep and disorders of consciousness: the relationship between the connectome and the diversity of brain states and experiences. Course Format <http://www.nsas.it/courses-workshops/course-format/> http://www.nsas.it/courses-workshops/course-format/ Application Form <http://www.nsas.it/courses-workshops/application-form/> http://www.nsas.it/courses-workshops/application-form/ Kind regards, Francesca The Course Secretariat Neuroscience School of Advanced Studies Certosa di Pontignano Via di Pontignano 5, Castelnuovo Berardenga, Siena. Italy Tel. +39.0577.146.0003

Feb. 22, 2017

Postdoctoral Positions in Machine Learning and Neuromodulation at Emory University and Georgia Tech

by Babak Mahmoudi

Postdoctoral positions are available at Emory University School of Medicine and Georgia Institute of Technology on developing machine learning algorithms and data analytics tools for the optimization of neuromodulation therapies for epilepsy and memory. The successful candidate will collaborate with scientists and clinicians in the Departments of Biomedical Informatics, Neurosurgery, Neurology and Biomedical Engineering at Emory University and Georgia Tech, Grenoble University at France, and medical device industry partners. The ideal candidate will have a PhD in Computer Science, Biomedical Engineering, Computational Neuroscience or related fields with a strong background in machine learning, optimization theory, multivariate analysis and signal processing. Programming skill sets in Matlab and other languages (e.g., C++ and python) would be key to a successful candidate. Inquiries should be addressed to Babak Mahmoudi (b.mahmoudi(a)emory.edu) The initial appointment is for one year, renewal expected if progress is satisfactory and funds are available. Please send applications including a CV, statement of research interests, and the names and full contact details of three references to b.mahmoudi(a)emory.edu

Feb. 22, 2017

Post-doc proposal: Charting the human brain with fMRI

by Ana Luísa Pinho

Please find enclosed a post-doc proposal for an original "exhaustive cognitive mapping" performed in the framework of the Human Brain Project. *Duration & salary*: 12 months renewable up to 3 years, about 2100 enet monthly *Research teams*: Parietal (INRIA Saclay) and Unicog (INSERM), located at Neurospin, Saclay,France. *Responsible:* Bertrand Thirion. Contact: bertrand.thirion(a)inria.fr *Application*: Interested candidate should send CV and motivation letter. The post-doc will be in charge of setting a set of protocols up and running to pass them on the existing pool of 12 subjects of the Individual Brain Charting project. These protocols will be provided by the community (potentially from in-house developments) are meant to cover a large array of sensory, motor and cognitive processes. The post-doc will take part to the set of acquisitions performed on Neurospin 3T scanner at high resolution (1.5mm) and analyze the data by using a pipeline provided by the lab. Detailed reports will be provided to assess the quality of the data, motivate the participants and document the content of the database. These reports will provide extensive information on the functional organization of the brain in each individual, which will furthermore be confronted to other imaging modalities, e.g. anatomical and functional connectivity. Complex alignment procedures will then be carried out to obtain a population-level mapping that will lead to the first data-based cognitive atlas of the human brain. The data and atlas and analysis material will be released publicly. See https://team.inria.fr/parietal/files/2011/07/post-doc_ibc-1.pdf for details.

Feb. 22, 2017

Postdoctoral position in computational neuroscience in New York

by Ruben Coen-Cagli

Postdoctoral position in the Coen-Cagli Laboratory Albert Einstein College of Medicine, New York, NY I will be at Cosyne and available to meet with candidates there. I am looking for a highly creative and motivated postdoctoral fellow to work in the field of computational and systems neuroscience in my lab at the Department of Systems and Computational Biology and Department of Neuroscience, Albert Einstein College of Medicine (AECOM) in New York City. The lab studies how biological sensory systems interpret the surrounding environment. Topics include probabilistic representations of natural images; models of selectivity and variability in large cortical populations; the perceptual consequences of neuronal variability; and uncertainty in visual and auditory perception. We combine theories of probabilistic neural coding, tools from computer vision and machine learning, psychophysics, and neurophysiology through collaborations. The candidate is expected to perform research related to these topics. Close interaction and collaboration with other members of the department is anticipated. https://sites.google.com/site/rubencoencagli/ Applicants must have a Ph.D. in a relevant discipline, with an academic record of scientific excellence and independent research. Prior experience should include areas such as computational neuroscience, machine learning, computer vision, or statistics. Experience with psychophysics experiments is a plus. Applicants should have a keen interest in interdisciplinary approaches to biological and neural systems. AECOM offers a vibrant interdisciplinary environment, with a growing systems and computational contingent. It is located in a quiet neighborhood of New York, only a short subway ride from Manhattan. Information about working at the AECOM, including benefits and housing for postdocs, can be found at: https://www.einstein.yu.edu/research/belfer-institute/ The position starts in summer 2017, and is funded for several years, with an initial one-year appointment and expectation of extension given satisfactory performance. Salary is competitive and will be commensurate with experience. Candidates should send a single pdf file, consisting of a 1-page motivation letter, CV, and publication list to ruben.coencagli(a)gmail.com. Furthermore, candidates should organize two letters of reference, to be sent to the same e-mail address. The position is open until filled. Albert Einstein College of Medicine, Inc. is an equal opportunity employer committed to hiring minorities, women, individuals with disabilities and protected veterans. Ruben Coen Cagli, PhD Department of Systems and Computational Biology, and Dominick Purpura Department of Neuroscience Albert Einstein College of Medicine 1300 Morris Park Ave. Price 353B Bronx, 10461. NY office: +1.718.678.1150 web: https://sites.google.com/site/rubencoencagli/

Feb. 21, 2017

NeuroBridges 2017 (Second Call)

by ahmed el hady

*NeuroBridges 2017 Summer school , Cluny, France* *(** September 3 - September 14, 2017 )* *NeuroBridges* is an initiative that was founded to bring Mediterrenean and Middle Eastern neuroscientists in an event to discuss science and promote mutual understanding. The two first events of the series took place in Goettingen, Germany in July 2014 (http://elsc.huji.ac.il/ content/neurobridges) and in Paris, France, in September 2015 ( http://elsc.huji.ac.il/content/second-neurobridges-meeting) Each of these three days events brought together twenty young speakers, Palestinians, Egyptians, Jordanians, Syrians and Israelis, as well as several speakers from the hosting countries. Nobel Laureate Erwin Neher opened NeuroBridges in 2014. Stanislas Dehaene, professeur au College De France and member of the French Academy of Sciences gave the opening lecture in NeuroBridges 2015. *NeuroBridges 2017* (http://decision-making-lab.com/NeuroBridges/ neurobridges2017.html) will be a ten days summer school. Students will attend lectures delivered by a group of leading neuroscientists, experimentalists as well as theoreticians, which will address the fundamental questions of contemporary neuroscience. In addition to the lectures, the students will work in groups on small research projects. The school is intended for graduate students and postdocs, primarily from the Middle East and the Mediterranean region either working in their home countries or abroad. We will consider applicants with some background in applied mathematics, computer science, electrical engineering or physics, interested in theoretical brain and cognitive sciences. We will also consider those with biological or medical background given that they show proof of basic mathematical knowledge (i.e. linear algebra, calculus, in particular ordinary differential equation). Through the online application system (can be accessed through: http://decision-making-lab.com/NeuroBridges/neurobridges2017.html ) , you will be asked to provide personal details, academic background, the names of two referees , a motivation letter that should include a paragraph about your quantitative skills and a CV. The school will take place between September 3 and September 14, 2017 in Le Centre de Conférences Internationales de Cluny (CCIC) <http://www.ccic.eu/index.html>. Cluny is a small medieval town in Burgundy, France, located about 400km southeast of Paris (accessible by fast train, TGV). All costs of registration and accommodation will be covered by the organizers. A limited number of travel grants will also be available. The application deadline is March 31st 2017. *NeuroBridges* is co-organized by Ahmed El Hady <http://scholar.princeton.edu/ahmedelhady/home>(Princeton Neuroscience Institute, USA), Yonatan Loewenstein <http://elsc.huji.ac.il/loewenstein/home> (Hebrew University of Jerusalem, Israel) and David Hansel <https://neurophys.biomedicale.parisdescartes.fr/members/david-hansel>(CNRS, Paris, France). *2017 Confirmed Faculty (check the website regularly for updated faculty list):* Carl van Vreeswijk (CNRS) <https://neurophys.biomedicale.parisdescartes.fr/members/carl-van-vreeswijk/> Gianluigi Mongillo (CNRS) <https://neurophys.biomedicale.parisdescartes.fr/members/gianluigi-mongillo/> Shaul Druckmann (Janelia) <https://www.janelia.org/people/shaul-druckmann> Yoram Burak (Hebrew University) <http://elsc.huji.ac.il/burak/home> Omri Barak (Technion) <http://neuroscience.technion.ac.il/researcher/19> Najib Majaj (NYU) <https://www.researchgate.net/profile/Najib_Majaj> Farzan Nadim (NJIT) <https://biology.njit.edu/people/nadim.php> Valerie Ego-Stengel (CNRS) <https://www.unic.cnrs-gif.fr/teams/Research%20group%20of%20Daniel%20Shulz> If you have any questions, please do not hesitate to email Ahmed El Hady (email: ahady(a)princeton.edu )

Feb. 20, 2017

PhD post in Computational Neuroscience

by McDaid, Liam

Dear all, A PhD position in Computational Neuroscience is available at the Ulster University where the closing date for applications is Friday 24th February 2017. The position is fully funded with a start date of October 2017. Project title: A Computational Model of Regulating Neuronal Excitability by GABA Neurons The successful candidate will be based at Ulster working within the Intelligent Systems Research Centre (ISRC) and the position will involve close collaboration with colleague at University College London and the University of Manchester. The project will build on recent findings where it was shown that the GAT3 transporter facilitates the uptake of extracellular GABA and this is accompanied by a large increase in intracellular Na+ concentration, which can reverse the Na+/Ca2+ exchanger causing an intercellular increase in Ca2+. This may have an important role in regulating blood flow and also can result in the release of gliotransmitters, which is believed to modulate synaptic strength and transmission. Moreover, it is now believed that GAT3 induces a rise in extracellular adenosine that acts at presynaptic adenosine receptors and this is likely to cause a decrease in secondary messengers within cells. This is a completely novel mechanism of glia-neuron communication and capturing this interaction will be the major focus of this PhD. This exciting project will require the graduate to collaborate with experimental neuroscientists in the development of computational models of the above GABA mediated interactions and therefore at the end of the PhD study period he/she will expect to have gained significant expertise in computational modelling and neuroscience. We would also like to encourage international applicants. For more information on how to apply go to: https://www.ulster.ac.uk/faculties/computing-and-engineering/schools/resear… ________________________________ This email and any attachments are confidential and intended solely for the use of the addressee and may contain information which is covered by legal, professional or other privilege. If you have received this email in error please notify the system manager at postmaster(a)ulster.ac.uk and delete this email immediately. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Ulster University. The University's computer systems may be monitored and communications carried out on them may be recorded to secure the effective operation of the system and for other lawful purposes. Ulster University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of a separate attachment, the text of email is not intended to form a binding contract. Correspondence to and from the University may be subject to requests for disclosure by 3rd parties under relevant legislation. The University of Ulster was founded by Royal Charter in 1984 and is registered with company number RC000726 and VAT registered number GB672390524.The primary contact address for Ulster University in Northern Ireland is Cromore Road, Coleraine, Co. Londonderry BT52 1SA

Feb. 20, 2017

Postdoctoral position modeling gamma synchrony in Carmen Canavier's lab

by Canavier, Carmen C.

Description A Senior Postdoctoral Researcher position is available in the area of Computational Neuroscience in the Department of Cell Biology and Anatomy, LSU Health New Orleans in the lab of Dr. Carmen Canavier. The main project will take an existing model of interneuronal network gamma (ING) and embed it within a network of hippocampal pyramidal neurons in order to build a model of pyramidal-interneuronal gamma (PING). The project will include both theoretical and empirical analyses of the synchronization properties of these networks, and in particular the contribution of intrinsic neuronal properties as compared to synaptic properties. These analyses require knowledge of linear and nonlinear systems theory, probability theory and signal processing. The project will require programming in python and the simulation package NEURON to run parallelized simulations on a Linux cluster. This position will include administering the lab’s computational cluster and mentoring both graduate and undergraduate students. Qualifications * Ph.D. in Engineering, Mathematics, Neuroscience, Physics, Computer Science or a related field of study * At least three (3) years of experience in computational neuroscience Preferred Qualifications * Writing code, running the simulation package NEURON, using single neuron models * Signal processing experience and familiarity with nonlinear dynamics Applicant Instructions Qualified applicants should submit curriculum vitae and three letters of reference using the following link https://www.lsuhsc.edu/Administration/hrm/CareerOpportunities/Home/Detail/1…

Jan. 25, 2017