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Jobs at the Allen Institute: linking neuronal function, cell types, and connectivity

by Anton Arkhipov

Dear Colleagues, We are hiring for multiple positions in a new ambitious project supported by the NIH U01 grant from the BICAN consortium (please see the announcement<https://www.nimh.nih.gov/news/science-news/2022/nih-brain-initiative-launch…>). Combining optical physiology in vivo with spatial transcriptomics and electron microscopy, we aim to link cell types of the mouse cortex with their function. The project is led by Marina Garrett (Allen Institute), Jack Waters (Allen Institute), Jerry Chen (Boston University), and Anton Arkhipov (Allen Institute). Scientist – Imaging: The person in this position will lead experimental imaging work to utilize and improve the spatial transcriptomics platform used in this project. https://alleninstitute.hrmdirect.com/employment/job-opening.php?req=2212881 Scientist – Analysis of Connectome and Functional Activity: This scientist will focus on linking the connectome and morphologies of cortical neurons to their activity in vivo, using the Electron Microscopy (EM) volume of 1 mm3 of the mouse visual cortex obtained by the Allen Institute. https://alleninstitute.hrmdirect.com/employment/job-opening.php?req=2209286 Scientist - Neurophysiology Data Analysis: This scientist will focus on the analysis of the visual physiology data from 2p calcium imaging in vivo to study neural coding and circuit dynamics. https://alleninstitute.hrmdirect.com/employment/job-opening.php?req=2231731 Software Engineer - Tools for Neurophysiology Data Analysis: The software engineer will build software tools and infrastructure to support processing and analysis of multi-modal image-based datasets in this project. https://alleninstitute.hrmdirect.com/employment/job-opening.php?req=2232755 Scientist - Neural Data Analysis: This scientist will focus on linking the 2p calcium imaging and spatial transcriptomics modalities for individual cells, including tasks like co-registration and exploration of statistical relationships between the functional and transcriptomics types. https://alleninstitute.hrmdirect.com/employment/job-opening.php?req=1937290 Please consider applying and reach out if you have any questions. And we will appreciate it if you help us spread the word about these opportunities! Best wishes, Anton. Anton Arkhipov Associate Investigator T: 206.548.8414 E: antona(a)alleninstitute.org<mailto:antona@alleninstitute.org> [Text Description automatically generated] alleninstitute.org<https://alleninstitute.org> brain-map.org

Oct. 4, 2022

NIH-funded Postdoc or Software Developer position on multiscale brain modeling

by Shailesh Appukuttan

*(posting on behalf of Dr. Salvador Dura-Bernal)* An NIH-funded Postdoc or Software Developer position is now available in the Dura-Bernal Lab <http://dura-bernal.org/> at the State University of New York (SUNY) Downstate Health Sciences (Brooklyn, New York). The position is focused on multiscale modeling of the brain, more specifically, developing a co-simulation interface between the NetPyNE <http://www.netpyne.org/> and The Virtual Brain <http://dura-bernal.org/www.thevirtualbrain.org> (TVB) tools, which will link the molecular, cellular, circuit and whole-brain network scales. The resulting multiscale models will help interpret experimental data ranging from single cell recordings and LFP up to EEG and fMRI. For details please visit: http://dura-bernal.org/postdoc-2022 or email salvador.dura-bernal(a)downstate.edu

Oct. 3, 2022

Extended deadline (Nov 30): Biological Cybernetics Special Issue: What can Computer Vision learn from Visual Neuroscience?

by Jeffrey L Krichmar

Dear Colleagues, Due to numerous requests, we have extended the deadline for submitting a paper to the Biological Cybernetics Special Issue: What can Computer Vision learn from Visual Neuroscience? New Submission deadline: November 30, 2022 https://www.springer.com/journal/422/updates/20421374 This special issue invites original research and review articles related to topics in biological vision that can potentially benefit computer vision systems. The following is a non exhaustive list of topics in biological vision that can also benefit computer vision systems. • Active vision’s role in visual search, scene understanding, social interactions, etc. • Learning in the visual system. Learning in biology is continual, few-shot, and adversarially robust. • The roles of recurrent and top-down connections in the visual cortex. • Spike based spatiotemporal processing and its implications for neuromorphic vision. • Motion perception in dynamic environments. • Neural coding schemes in the visual system (e.g., sparse coding, predictive coding, and temporal coding.) • The roles of attention mechanisms in biological vision. How to submit: Please submit your manuscript using the journal online submission system following the Biological Cybernetics submission guidelines. Guest Editors: Kexin Chen - Department of Cognitive Sciences, University of California, Irvine Hirak J. Kashyap - Department of Computer Science, University of California, Irvine Jeffrey L. Krichmar - Department of Cognitive Sciences, Department of Computer Science, University of California, Irvine Xiumin Li - College of Automation, Chongqing University, Chongqing, China If you have any questions, please reach out to one of the guest editors. Best regards, Jeff Krichmar Department of Cognitive Sciences 2328 Social & Behavioral Sciences Gateway University of California, Irvine Irvine, CA 92697-5100 jkrichma(a)uci.edu http://www.socsci.uci.edu/~jkrichma

Sept. 30, 2022

Brown University Postdoc (and other positions) in Systems Neuroscience

by Theresa Desrochers

The Desrochers Lab at Brown University is currently recruiting multiple positions. The text that follows is specific to a postdoc. Please contact Dr. Desrochers if you are interested in other (e.g., graduate student or RA) positions. We invite applications for a unique Postdoctoral Research Associate position to study the neural bases of cognitive and behavioral sequences in the laboratory of Dr. Theresa Desrochers in the Department of Neuroscience at Brown University. The position will include the opportunity to study behaving NHPs using fMRI, neurophysiology, and/or computational techniques. The Desrochers Lab (http://neuroscience.brown.edu/desrochers) provides a unique cross-level and cross-species training environment situated within a highly collaborative research environment fostered by Brown University and the Carney Institute for Brain Science (https://www.brown.edu/carney) With the research and brain science communities growing, it is an exciting time to be at Brown University. Applicants should have a strong background in systems neuroscience, behavioral training, electrophysiology, or fMRI. Strong quantitative skills and previous experience with animals and/or NHPs is preferred. Applicants must hold a Ph.D. in Neuroscience, Psychology, or a related discipline or must show evidence that the Ph.D. will be completed before the start of the position. This funded position is initially for 12 months with the possibility of renewal. Compensation will be commensurate with relevant experience according to the NIH scale. Brown University is an EEO/AA employer and encourages applications from minorities and women. Review of applications will begin immediately and will continue until the position is filled or the search is closed. For more information, please contact theresa_desrochers(a)brown.edu. ~Theresa -- Theresa M. Desrochers, Ph.D. Rosenberg Assistant Professor of Brain Science Department of Neuroscience Department of Psychiatry and Human Behavior (courtesy) Carney Institute for Brain Science Brown University http://neuroscience.brown.edu/desrochers

Sept. 30, 2022

Computational Neuroscience Position

by Neymotin, Samuel (NKI)

A computational neuroscience postdoc position is available at the Nathan Kline Institute for Psychiatric Research (https://www.nki.rfmh.org) to work on recently awarded grants from NIH (MPI: Schroeder, Bickel, Neymotin) and ARO (PI: Neymotin). The NIH project aims to investigate the brain's dynamic circuit motifs underlying internal vs. external-oriented processes in the auditory system, using a combination of electrophysiology and biophysical circuit modeling of the thalamocortical system. The ARO project involves developing circuit models of the hippocampus interfaced with virtual agents, and training the agents/models to perform spatial navigation tasks using biologically-inspired learning rules. Applicants should have a strong background in: multiscale modeling using NEURON/NetPyNE, Python software development, neural data analysis, machine learning, and writing/presenting research. To find out more, email Sam Neymotin (samuel.neymotin(a)nki.rfmh.org) To apply, send a CV and cover letter. NKI is an equal opportunity employer. ________________________________ IMPORTANT NOTICE: This e-mail is meant only for the use of the intended recipient. It may contain confidential information which is legally privileged or otherwise protected by law. If you received this e-mail in error or from someone who was not authorized to send it to you, you are strictly prohibited from reviewing, using, disseminating, distributing or copying the e-mail. PLEASE NOTIFY US IMMEDIATELY OF THE ERROR BY RETURN E-MAIL AND DELETE THIS MESSAGE FROM YOUR SYSTEM. Thank you for your cooperation.

Sept. 29, 2022

Postdoc (3 years) in computational neuroscience / computational neurology

by Daun, Silvia

Dear All, the Daun lab at the University of Cologne / the Research Center Juelich in Germany is seeking a Postdoc to join a project on the computational modeling of the neural processes underlying motor control: Your Job: In comparison to sensory, cognitive, or affective-emotional systems, the motor system’s output is directly quantifiable and comparable across species. When studying the neural mechanisms underlying motor control, behavioral readouts across species offer the potential to overcome one grand challenge in neuroscience: bridging the gap between molecular, cellular, and systems levels. Importantly, the motor system is affected in many, if not all, neurological and psychiatric disorders. Hence, a more comprehensive understanding of the motor system will further our understanding of the neural mechanisms underlying neurological and psychiatric disorders. Likewise, neuropsychiatric diseases allow novel insights into the motor system’s (dys-)function and testing models of motor control. The successful candidate will be part of a collaborative research center (CRC1451; https://www.crc1451.uni-koeln.de)<https://www.crc1451.uni-koeln.de),/> located at the University of Cologne that brings together neuroscientists investigating neural processes underlying motor control on these different levels in animals and humans, in both health and neuropsychiatric diseases. This includes: * Being part of the Project INF of the CRC1451: Data Management for Computational Modeling (https://www.crc1451.uni-koeln.de/index.php/inf/) Within this project they will be responsible for the development of data-driven, cross-species computational models of motor control which shall be based on the data collected in the individual and central projects of the CRC1451. The rich data collection contains behavioral and kinematic data of humans and mice (locomotion); fMRI, EEG and TMS data from healthy subjects and patients (with stroke, Alzheimers’ or Parkinsons’ disease as well as tic disorders) as well as electrophysiological recordings from mice. * Presentation and publication of the results * Interaction with team members and collaborators from Psychology, Medicine, Biology and Computational Neuroscience * Participation in the CRC1451 events Your Profile: * Completed study (Master) in Computer Science, Computational Neuroscience, Physics, Mathematics, Biomedical Engineering * Outstanding doctoral degree in one of the above disciplines * Significant programming skills (preferably in Matlab or Python) * Strong, long-standing experience in data-driven computational modeling * Keen interest in understanding the motor system * Proven scientific achievements as evidenced by publications in international, peer-reviewed journals * Interest in combining basic research and translational research on patients * Good command of English * High social competence and organizational talent * High motivation Our Offer: We work on the very latest issues that impact our society and are offering you the chance to actively help in shaping the change! We support you in your work with: * A large research campus with green spaces, offering the best possible means for networking with colleagues and pursuing sports alongside work * A stimulating, collaborative, and international research environment * Comprehensive training courses and individual opportunities for personal and professional further development * Extensive company health management * Ideal conditions for balancing work and private life, as well as a family-friendly corporate policy * Targeted services for international employees, e.g. through our International Advisory Service We offer you an exciting and varied role in an international and interdisciplinary working environment. The position is for a fixed term of 3 years. Salary and social benefits will conform to the provisions of the Collective Agreement for the Public Service (TVöD-Bund), pay group 13, depending on the applicant’s qualifications and the precise nature of the tasks assigned to them. We welcome applications from people with diverse backgrounds, e.g. in terms of age, gender, disability, sexual orientation / identity, and social, ethnic and religious origin. A diverse and inclusive working environment with equal opportunities in which everyone can realize their potential is important to us. For informations on how to apply please refer to https://www.fz-juelich.de/de/karriere/stellenangebote/2022-395 Closing date: 02.11.2022 Best, Silvia Prof. Dr. rer. nat. Silvia Daun Stellvertreterin des INM-3 Direktors Stellvertretende Sprecherin des SFB1451 Kognitive Neurowissenschaften Institut für Neurowissenschaften und Medizin (INM-3) Forschungszentrum Jülich Leo-Brandt-Str. 5 52425 Jülich Telefon: 02461-61-8638 Telefax: 02461-61-9853 Email: s.daun(a)fz-juelich.de https://www.fz-juelich.de/de/inm/inm-3 <https://www.fz-juelich.de/de/inm/inm-3>und Zoologisches Institut Universität zu Köln Biowissenschaftliches Zentrum, Zi. 1.104 Zülpicher-Straße 47b 50674 Köln Telefon: 0221-470-3829 Telefax: 0221-470-4889 Email: silvia.daun(a)uni-koeln.de https://zoologie.uni-koeln.de/arbeitsgruppen/ag-daun ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

Sept. 28, 2022

Post-doc @ Italian Institute of Technology, Ferrara

by Alessandro D'Ausilio

Post-doc position in Human Neurophysiology of Sensorimotor Communication Duration: 2 years, renewable for 3 more. Who: Physicists, computer scientists, biomedical/electrical engineers, biologists, biotechnologist, medical doctors and experimental psychologists with a PhD in Neuroscience or related disciplines. We will positively evaluate the following: Documented experience with EEG/TMS/MoCap. Documented experience in advanced data analysis. Programming skills. Team-working skills. Work environment: You will be working in very friendly environment within a larger multidisciplinary group of about 30-35 people. Your will be part of a sub-group composed by 2 other post-docs and 8 PhD students working side by side with an advanced statistical methods group (1 researcher + 3 post-docs). Open door policy. Where: The Center for Translational Neurophysiology of Speech and Communication (CTNSC) @ Italian Institute of Technology (IIT), hosted by the University of Ferrara. The city: the CTNSC is hosted in a prestigious historical building in the city center. Ferrara is a well connected renaissance city (30-min to Bologna, 40-min to Padua, 60-min to Venice; 2 nearby international airports), bustling with students (https://whc.unesco.org/en/list/733 <https://whc.unesco.org/en/list/733>). Accommodations are relatively cheap and you won’t need a car as everyone uses a bicycle. Feel free to contact me for more info: alessandro.dausilio(a)gmail.com <mailto:alessandro.dausilio@gmail.com> CTNSC website: https://www.iit.it/it/web/multiscale-brain-communication <https://www.iit.it/it/web/multiscale-brain-communication> Application website: https://iit.taleo.net/careersection/ex/jobdetail.ftl?lang=en&job=22000066 <https://iit.taleo.net/careersection/ex/jobdetail.ftl?lang=en&job=22000066> DEADLINE: October 15th, 2022

Sept. 28, 2022

Job Openings: Research Assistant Professor in Computer Science (3 vacancies) at Hong Kong Baptist University

by COMP HKBU

The Department of Computer Science at Hong Kong Baptist University presently offers BSc, MSc, MPhil, and PhD programmes, and is now seeking outstanding applicants for the following positions. *Research Assistant Professor in Computer Science (3 vacancies) (PR0174/22-23)* The positions are created and funded as part of the strategic research development initiatives in the Department. The appointees will be provided with a conducive research environment, and will work within an established group of faculty in the Department. They are also expected to perform group-based high-impact research and undertake some teaching duties. Applicants should possess a PhD degree in Computer Science, Computer Engineering, Information Systems, or a related field, and sufficiently demonstrate abilities to conduct high-quality research in one of the Department's key research areas: (i) Artificial Intelligence and Machine Learning; (ii) Big Data and Data Management; (iii) Computer Vision and Pattern Recognition; and (iv) Distributed Systems and Networking. These key research areas have a special thematic focus on (a) Health Informatics and (b) Security and Privacy-aware Computing related applications. The initial appointment will be made on a fixed-term contract of two to three years. Re-appointment thereafter is subject to mutual agreement. For enquiry, please contact Prof. Jianliang Xu, Head of Department (email: xujl(a)comp.hkbu.edu.hk) More information about the Department can be found on its website at https://www.comp.hkbu.edu.hk. *Salary will be commensurate with qualifications and experience.* Application Procedure: Applicants are invited to submit their applications at the HKBU e-Recruitment System (jobs.hkbu.edu.hk) with samples of publications, preferably the three best ones out of their most recent publications/works. Those should also request two referees to send in confidential letters of reference, with the PR number (stated above) quoted on the letters, to the Human Resources Office (Email: recruit(a)hkbu.edu.hk <https://hro.hkbu.edu.hk/admin/recruit@hkbu.edu.hk>) direct. Those who are not invited for interview 4 months after the submission of the application may consider their applications unsuccessful. All application materials including publication samples, and scholarly/creative works will be disposed of after completion of the recruitment exercise. Details of the University's Personal Information Collection Statement can be found at http://hro.hkbu.edu.hk/pics. The University reserves the right not to make an appointment for the post advertised, and the appointment will be made according to the terms and conditions applicable at the time of offer. Review of applications is on-going until the positions are filled. URL: *https://www.comp.hkbu.edu.hk/v1/?page=job_vacancies&id=832 <https://www.comp.hkbu.edu.hk/v1/?page=job_vacancies&id=832>*

Sept. 28, 2022

DeepMath 2022 ( Nov 17th - 18th, San Diego) Registration

by Ahmed El Hady

**** *Dear all,* * **The**registration is open for DeepMath 2022 : ** https://www.eventbrite.com/e/deepmath-2022-registration-393832562797 We**have an amazing line up of invited**speakers: * Francis Bach**(INRIA) * Anima Anandkumar (CalTech) * Sara Solla**(Northwestern) * Berk Ustun**(UCSD) * Yisong Yue**(Caltech) * Courtney**Paquette (McGill) * Daniel Soudry ( Technion ) In**addition, we have a poster session and ample**opportunities for researchers across disciplines to discuss state of the art**research on the theoretical understanding of deep neural networks. So save your**spot . == Location == DeepMath 2022 will be held in**San Diego, CA, USA.. Stay tuned to the DeepMath website (www.deepmath-conference.com <http://www.deepmath-conference.com/>) for more details on venue and hotels ** ** The**talks will be freely live-streamed over YouTube and subsequently posted on the**DeepMath YouTube**channel : https://www.youtube.com/channel/UCamugMiftSeZo4EjdtePPyw/playlists Please get in touch in case you have**any outstanding questions. All the best, Ahmed El Hady On behalf of the DeepMath 2022**Organizational Committee ***

Sept. 26, 2022

Neuroimaging Statistics Faculty Opportunities

by Shuo Wang

Dear Colleagues, We have a neuroimaging statistics faculty position at Washington University in St. Louis: https://facultyopportunities.wustl.edu/Posting/Detail/1010785. Please apply if you are interested. Thank you, Shuo -- Shuo Wang, Ph.D. Assistant Professor Department of Radiology Washington University in St. Louis https://sites.wustl.edu/wanglab/

Sept. 26, 2022