- Comp-neuro - lists.cnsorg.org

Okinawa/OIST Computational Neuroscience Course 2016: applications open

by Erik De Schutter

OKINAWA/OIST COMPUTATIONAL NEUROSCIENCE COURSE 2016 Methods, Neurons, Networks and Behaviors June 13 - June 30, 2016 Okinawa Institute of Science and Technology Graduate University, Japan https://groups.oist.jp/ocnc The aim of the Okinawa/OIST Computational Neuroscience Course is to provide opportunities for young researchers with theoretical backgrounds to learn the latest advances in neuroscience, and for those with experimental backgrounds to have hands-on experience in computational modeling. We invite graduate students and postgraduate researchers to participate in the course, held from June 13th through June 30th, 2016 at an oceanfront seminar house of the Okinawa Institute of Science and Technology Graduate University. Applications are through the course web page (https://groups.oist.jp/ocnc) only; January 4 - February 5, 2016. Applicants will receive confirmation of acceptance in March. Like in preceding years, OCNC will be a comprehensive three-week course covering single neurons, networks, and behaviors with ample time for student projects. The first week will focus exclusively on methods with hands-on tutorials during the afternoons, while the second and third weeks will have lectures by international experts. The course has a strong hands-on component based on student proposed modeling or data analysis projects, which are further refined with the help of a dedicated tutor. Applicants are required to propose their project at the time of application. There is no tuition fee. The sponsor will provide lodging and meals during the course and may support travel for those without funding. We hope that this course will be a good opportunity for theoretical and experimental neuroscientists to meet each other and to explore the attractive nature and culture of Okinawa, the southernmost island prefecture of Japan. Invited faculty: • Erik De Schutter (OIST) • Sophie Deneve (École Normale Supérieure, France) • Kenji Doya (OIST) • Chris Eliasmith (University of Waterloo, Canada) • Tomoki Fukai (RIKEN BSI, Japan) • Michael Häusser (University College London, UK) • Yukiyasu Kamitani (ATR & Kyoto University, Japan) • Etienne Koechlin (École Normale Supérieure, France) • Bernd Kuhn (OIST) • Stefan Mihalas (Allen Institute for Brain Science, USA) • Partha Mitra (Cold Spring Harbor, USA) • Astrid Prinz (Emory University, USA) • John Rinzel (New York University, USA) • Yoko Yazaki-Sugiyama (OIST)

Jan. 4, 2016

Fully funded PhD position at the University of Ghent, Belgium

by Daniele Marinazzo

The lab of Daniele Marinazzo (www.ugent.be/~dmarinaz) at the department of Data Analysis, Faculty of Psychology and Pedagogical Sciences of the University of Ghent, Belgium, is looking for a PhD student. The position is fully funded for 4 years by the Research Foundation Flanders (FWO). The research subject involves advanced statistical data analysis of fMRI data. The student will be part of a research group focusing on the development and validation of new methods for the analysis of neuroimaging data, in the framework of a multidisciplinary collaboration with psychologists and clinicians. Both candidates with a technical degree and candidates with a psychology degree but an interest in programming and quantitative analyses are encouraged to apply. Knowledge of at least one programming language (python, matlab, R …) and an interest for multidisciplinary research are required. The University of Gent (www.ugent.be) hosts a vibrant research community and offers excellent facilities to students and employees. The most likely starting date is October 2016 but earlier appointments can be considered. Candidates are invited to send a motivation letter and the names of two referees to Daniele Marinazzo (daniele.marinazzo(a)ugent.be) Informal inquiries and requests for further information are most welcome. -- Daniele Marinazzo -- Department of Data Analysis Faculty of Psychology and Pedagogical Sciences, Ghent University Henri Dunantlaan 1, B-9000 Ghent, Belgium +32 (0) 9 264 6375 <http://www.da.ugent.be/>http://users.ugent.be/~dmarinaz/ http://helpdesk.ugent.be/e-maildisclaimer.php -- Daniele Marinazzo -- Department of Data Analysis Faculty of Psychology and Pedagogical Sciences, Ghent University Henri Dunantlaan 1, B-9000 Ghent, Belgium +32 (0) 9 264 6375 <http://www.da.ugent.be/>http://users.ugent.be/~dmarinaz/ http://helpdesk.ugent.be/e-maildisclaimer.php

Jan. 4, 2016

XPPAUT 8.0

by Ermentrout, G Bard

I am happy to announce that the new version of XPPAUT is now available for download at: http://www.math.pitt.edu/~bard/xpp/xpp.html The new version uses the most recent version of AUTO and allows for much better two-parameter continuation of periodic and homoclinic orbits. In addition there are dozens of new command line options and support for CUDA code. -Bard Ermentrout

Jan. 4, 2016

Brain, Minds and Machines Summer Course 2016

by Kreiman, Gabriel

What: Brains, Minds and Machines Summer Course When: 08/15/2016 through 09/05/2016 Application Deadline: March 14, 2016 Link to application forms: https://ws2.mbl.edu/studentapp/studentapp.asp?courseid=BMM Link to course: http://cbmm.mit.edu/summer-school/2016 The Brains, Minds and Machines Summer Course will be held at MBL, Woods Hole, MA, from August 15, 2016 through September 5, 2016. This course is organized by the MIT-Harvard Center for Brains, Minds, and Machines (CBMM). The goal of this course is to introduce students with a broad range of backgrounds to cross-disciplinary research in Neuroscience, Cognitive Science, and Computer Science. The first half of the course will focus on the intersection between biological and computational aspects of learning and vision. The second half will focus on high-level social cognition and artificial intelligence, as well as audition, speech, and language processing. Lectures will be complemented by student research projects completed under the supervision of CBMM postdocs and faculty. We will also be hosting an Evening Lecture Series, including speakers from both industry and academia, in the fields of neuroscience, computer science, and cognitive science. Past speakers include: Larry Abbott, Columbia University College of Physicians and Surgeons Dorin Comaniciu, Siemens Corporate Technology Amnon Shashua, The Hebrew University of Jerusalem, Mobileye, OrCam Eero Simoncelli, Howard Hughes Medical Institute, New York University 2015 Invited Course Faculty: DiCarlo, Jim, MIT Freiwald, Winrich, Rockefeller University Kanwisher, Nancy, MIT Katz, Boris, MIT Koch, Christof, Allen Institute for Brain Research Kreiman, Gabriel, Children’s Hospital Boston, Harvard Medical School Poggio, Tomaso, MIT Rosasco, Lorenzo, Italian Institute of Technology Saxe, Rebecca, MIT Schulz, Laura, MIT Spelke, Liz, Harvard University Tenenbaum, Joshua, MIT Wilson, Matthew, MIT Winston, Patrick, MIT Please visit our website for more details: http://cbmm.mit.edu/summer-school/2016 This course is recommended for PhD students and Postdocs. The application deadline is March 14, 2016. The online application form can be found at: https://ws2.mbl.edu/studentapp/studentapp.asp?courseid=BMM Tuition, MBL room & board are provided by an NSF Science and Technology Center award to the Center for Brains, Minds, and Machines, Grant No. CCF-1231216. Gabriel Kreiman klab.tch.harvard.edu Use "9265358979" anywhere in the message body to ensure that your message navigates through anti spam filters

Jan. 3, 2016

Two funded PhD and one postdoc position in theoretical neuroscience at the Max Planck Institute for Brain Research

by Gjorgjieva, Julijana

We invite applications for two funded PhD and one postdoctoral research position in our group “Computation in Neural Circuits” at the Max Planck Institute for Brain Research in Frankfurt, Germany. We use mathematical and computational approaches to study how neurons and the connections between them tune their properties during brain development to ensure appropriate network dynamics, and how adult function and behavior emerge from a diversity of mechanisms. We collaborate with experimental research groups internationally, including the US, UK and the Netherlands, and we will benefit from interactions with the strong neuroscience community in Frankfurt. Successful applicants can work on a range of projects including data analysis, theoretical model development and analytical calculations, numerical simulations, and applications to novel datasets from collaborating labs. Applicants should have a strong quantitative background (in mathematics, physics, engineering, computer science, quantitative biology or related fields) and interest in interdisciplinary research. Background in neuroscience and good programming skills are desirable, but not essential. Postdoc candidates must have (or will soon be awarded) a PhD in the relevant quantitative disciplines. The positions can start as early as June 1, 2016. For more information or an informal discussion, contact Dr Julijana Gjorgjieva at gjorgjieva(a)brandeis.edu To apply for these positions, please submit the following to gjorgjieva(a)brandeis.edu: 1. A curriculum vitae 2. PhD candidates: a short motivation letter Postdoc candidates: a description of research interests 3. Contact details for 2-3 referees 4. If available, a written sample of scientific research, e.g. a manuscript, thesis, or other work product Our institute also hosts the IMPRS graduate school in “Neural Circuits” which currently has an open call for PhD applicants: http://brain.mpg.de/graduate-studies/call.html Julijana Gjorgjieva Max Planck Institute for Brain Research Max-von-Laue-Str 4 60438 Frankfurt/Main, Germany http://www.people.fas.harvard.edu/~gjorgjieva/

Jan. 3, 2016

Deadline Approaching: Telluride Neuromorphic Cognition Engineering Workshop 2016 Call for Topics

by Ralph Etienne-Cummings

Call for Topic Area Proposals2016 Neuromorphic Cognition Engineering Workshop *Telluride, Colorado, June 26 –July 16, 2016* *DEADLINE: January 8th, 2016* We are now accepting proposals for Topic Areas in the 2016 Telluride Neuromorphic Cognition Engineering Workshop. We support topics and projects in neuromorphic cognition, particularly those that involve solving challenging ‘everyday’ tasks that incorporate domain-specific knowledge, exploration, prediction, and problem solving. In particular, we are interested in projects that hold promise for addressing Grand Challenge types of problems that do not have strong solutions of any form, neuromorphic or not. These Challenge problems should feature long-duration sensorimotor problems that involve autonomous cognitive decision making. Examples might include tasks such as learning a new language, navigating through an unknown environment to locate an object or reach a desired location, visual and auditory understanding of human actions, adaptively manipulating unknown or complex objects in the service of a task, playing a game requiring inference of hidden information or long-term planning and learning, etc. Proposals related to hardware technologies that aim to bring these capabilities to reality are also encouraged. Topic proposals that aim to solve a particular problem using the multidisciplinary experience of participants will be favored over topics that simply gather a large number of people working within a discipline, or using a single technology, or approach. Topic areas for this summer's Telluride Neuromorphic Cognition Engineering Workshop <http://ine-web.org/> will be chosen from proposals submitted to the organizers. *Topic areas can span a large field; we are looking for leadership in planning activities and inviting good people in a field.* Although past topic areas have tended to be very broad and discipline-oriented (e.g., cognition, audition, vision, robotics, neural interfacing, neuromorphic VLSI, etc.), application-oriented topic areas (e.g., sensor fusion, game-playing robot, object recognition, sound localization, human robot interaction, etc.) are especially desirable. *Topic area leaders will receive housing for themselves and their invitees, and limited travel funds.* Topic area leaders will help to define the field of neuromorphic cognition engineering through the projects they pursue and the people they invite. They shape their topic by inviting speakers and project leaders (the *invitees*) and by initiating topic area project discussions prior to the workshop. Teams of two organizers are required. One of the organizers should be an attendee of a previous Telluride Workshop (in any capacity) and has stayed at the Workshop for at least one week. *Pre-workshop topic area choices and study assignments.* Before the workshop begins, each topic area will be required to prepare and distribute study materials that constitute: 1) an introductory presentation (e.g., pptx, video, review paper) of the fundamental knowledge associated with the topic area that *everyone at the workshop* should be exposed to, and 2) a few critical papers that the participants in the topic area should read before the workshop. The topic area should 3) begin a serious group discussion of the projects (e.g., via Facebook, Skype, email, etc). *The maximum 2-page proposals should include:* 1. Title of topic area. 2. Names of the two topic leaders, their affiliations, and contact information (email addresses). 3. A paragraph explaining the focus and goals of the topic area. 4. A list of possible specific topic area projects. 5. A list of example invitees (up to six names and institutions). No commitments necessary. 6. Any other material that fits within the two-page limit that will help us make a smart choice. *Send your topic area proposal* in pdf or text format to organizers13(a)neuromorphs.net <organizers12(a)neuromorphs.net> with subject line containing "topic area proposal". *Proposals must be received by January 8, 2016*; proposals received after the deadline may still be considered if space is available. *We expect to accept 4-5 topic areas*, each with 5 invitees*.* If your proposal for the topic area is not accepted, we will work with you to see if there is a natural way to include your ideas (and you) into the accepted topic areas. We hope to have significant turn-over each year in the topic areas and leaders to ensure fresh new ideas and participants. See the Institute of Neuromorphic Engineering (www.ine-web.org) for background information on the workshop and neuromorphs.net <https://neuromorphs.net/ws2009/wiki/PastWorkshops> for past workshop wikis. We look forward to your topic proposals! *Deadline: January 8, 2016* *The Workshop Directors:* Cornelia Fermüller <http://www.cfar.umd.edu/~fer/> (University of Maryland), Ralph Etienne-Cummings <http://etienne.ece.jhu.edu/people/ralph/index.html> (Johns Hopkins Univ.) Shih-Chii Liu <https://www.ini.uzh.ch/~shih/> (University of Zurich and ETH Zurich), Timmer Horiuchi <https://www.isr.umd.edu/faculty/horiuchi> (University of Maryland), Katalin Gotthard <http://physiological-sciences.arizona.edu/katalin-gothard> (University of Arizona), Michael Pfeiffer <https://www.ini.uzh.ch/~pfeiffer/index.html> (University of Zurich and ETH Zurich), Francisco Barranco <fbarranco(a)ugr.es> (University of Granada) *Former 2007-2013 Workshop Director:* Tobi Delbruck <https://www.ini.uzh.ch/~tobi/> (University of Zurich and ETH Zurich) -------------------------------------------------------------------------------------------- Ralph Etienne-Cummings, PhD, FIEEE Professor and Chairman Department of Electrical and Computer Engineering Computational Sensor Motor Systems Lab Laboratory for Computational Sensing and Robotics The Johns Hopkins University Baltimore, MD [image: cid:image001.png@01CFC064.B58B46A0]

Jan. 2, 2016

International Conference on Mathematical Neuroscience (ICMNS) 2016

by Zachary Kilpatrick

*Abstracts are due by January 7, 2016* https://icmns2016.inria.fr/call-for-contributions/ <https://icmns2016.inria.fr/call-for-contributions/> International Conference on Mathematical Neuroscience (ICMNS 2016) at the Congress Center in Juan-les-Pins on the French Riviera May 29 to June 1, 2016 Tutorials: May 29 Main Conference: May 30 - June 1 https://icmns2016.inria.fr/ <https://icmns2016.inria.fr/> CONFIRMED SPEAKERS Wulfram Gerstner (École polytechnique fédérale de Lausanne) John Rinzel (New York University) Antoine Triller (École Normale Supérieure de Paris) Rachel Kuske (U British Columbia) Jonathan Rubin (U Pittsburgh) Hinke Osinga (U Aukland) Carina Curto (Penn State University) Ruben Moreno-Bote (Foundation Sant Joan de Deu) Hiroya Nakao (Tokyo Institute of Technology) Eric Shea-Brown (U Washington) Si Wu (Beijing Normal University) Alex Roxin (Centre de Recerca Matematica) PROGRAM COMMITTEE Toni Guillamon (Universitat Politècnica de Catalunya) Roland Potthast (U Reading) Gregory Faye (Université Paul Sabatier ) Wilhelm Stannat (TU Berlin) Jonathan Touboul (College de France) Gilles Wainrib (Ecole Normale Supérieure) Suzanne Ditlevsen (University of Copenhagen) Boris Gutkin (Ecole Normale Supérieure) Martin Wechselberger (U Sydney) Jonathan Rubin (U Pittsburgh) Martin Krupa (INRIA Sophia Antipoilis) Carlo Laing (Massey University) Andre Longtin (U Ottawa) Daniele Avitabile (U Nottingham) Jose Carrillo (Imperial College) Pascal Chossat (Université Nice Sophia Antipolis) Carson Chow (National Institutes of Health) Steve Zucker (Yale University) Eric Shea-Brown (U Washington) Rachel Kuske (U British Columbia) Laura Sacerdote (Universita di Torino) Reinhard Hopfner (Johannes-Gutenberg Universitat) Olivier Faugeras (INRIA - Sophia Antipolis) Paul Bressloff (U Utah) Steve Coombes (U Nottingham) CONFERENCE CHAIRS Romain Veltz (INRIA - Sophia Anitpolis) Zachary Kilpatrick (U Houston) Evelyn Buckwar (Johannes Kepler Universitat Linz)

Jan. 1, 2016

Videos about Connecting Network Architecture and Network Computation

by Artur Luczak

Dear All, There was interesting workshop on Connecting Network Architecture and Network Computation, and videos from talks are available online: http://www.birs.ca/events/2015/5-day-workshops/15w5158/videos Cheers, Artur ------------------------------------------------ Artur Luczak, Ph.D. Canadian Centre for Behavioural Neuroscience Department of Neuroscience, University of Lethbridge, Canada http://lethbridgebraindynamics.com/artur_luczak

Dec. 31, 2015

Release of NEST 2.10.0

by Jochen Martin Eppler

Dear NEST users, we're happy to bring you NEST 2.10.0, which contains 303 repository commits by 25 developers since v2.8.0. The most notable changes over v2.8.0 are: * Support for simulations of gap junctions (see Jan Hahne et al., 2015) * Framework for structural plasticity (see Markus Butz et al., 2013 and Markus Butz et al., 2014) * Full support for the K computer (just in case you found one under your Christmas tree ;-)) All users are encouraged to upgrade and adapt their simulation scripts to the changes in the user interface at this point in time to benefit from the improvements in the new version. For a full list of changes and download links, see https://github.com/nest/nest-simulator/releases/tag/v2.10.0 Best regards and a happy new year, Jochen! -- Dr. Jochen Martin Eppler Phone: +49 2461 61-9471 ---------------------------------- Simulation Laboratory Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

Dec. 31, 2015

Call for Papers: Extracellular Potentials and Electric Field Interactions

by Reinoud Maex

JOURNAL OF INTEGRATIVE NEUROSCIENCE http://www.worldscinet.com/jin Call for Papers! Special Issue on Extracellular Potentials and Electric Field Interactions In experimental neuroscience, most electric signals are picked up from the electrolytic (or colloidal) solution that constitutes extracellular (interneuronal) space, yet the origin of these potentials is incompletely understood. Even more, theoreticians have recently argued about the physical principles underlying these phenomena. The present special issue invites experimental and theoretical work that can shed light on electric phenomena in extracellular space, with an emphasis on extracellular potentials and endogenous electric field interactions. The contributions solicited are original research papers and comprehensive reviews on methodological aspects. Submission deadline: 30 September 2016 Contact: Dr. Reinoud Maex reinoud.maex(a)ens.fr Questions that may be addressed are (but are not limited to): 1. The nature of extracellular potentials - What is nature of the electric currents, and what is the velocity (distribution) of the ions involved? Since membrane currents underlie the extracellular currents, what are the relative contributions of synaptic versus voltage-gated channels, excitatory versus inhibitory synapses, capacitive currents? How important are Lorenz forces between currents (due to the generated magnetic fields) and is there a contribution of polarization currents? - Is extracellular space purely resistive, or is a capacitive component involved, and what factors (such as ionic concentration, Debye shielding, etc.) contribute to its resistivity? 2. Modeling of extracellular potentials and electric field interactions - What level of detail is needed to model extracellular electrical phenomena, and which formalism can be employed? How valid is the cable equation, or need slow concentration changes of the major ionic components involved be modeled explicitly? How can LFP calculations be incorporated in simulation software? - Can volume transmission be simulated adequately as volume conductors? Are ephaptic coupling effects adequately simulated in one dimension? 3. Neuronal inference from measured extracellular potentials - What is the importance of the electrode characteristics for the proper interpretation of the measured signals? - What are the underlying assumptions, and limitations, of current-source-density analysis? How valid is the dipole approximation? Why are recent experiments being interpreted in terms of monopoles, and can single-compartmental model neurons generate local field potentials at all? - What can be learned from the power density distribution of signal frequencies? 4. Neurostimulation - What is the effect on neurons of an externally applied current or potential, and what mechanism (or rationale) underlies deep brain stimulation? 5. Physiological roles of extracellular potentials and endogenous electrical fields - Do extracellular potentials contribute to neuron-neuron and neuron-glia communication? Can there be a role for extracellular potentials in the homeostasis, clearance, and volume regulation of extracellular space, and in the control of blood flow and of the blood-brain-barrier. - What is the integrative role of endogenous electrical fields in brain function?

Dec. 31, 2015