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Fruit Fly Brain Hackathon 2018

by Yiyin Zhou

Fruit Fly Brain Hackathon 2018 FFBH 2018 <http://fruitflybrain.org/hackathons>March 14, 2018Columbia University, New York, NY 10027 We are pleased to announce the 3rd Fruit Fly Brain Hackathon (FFBH 2018). This hackathon will be focused on open neurophysiology data (electrophysiology, imaging, etc.) of, but not limited to, the fruit fly brain. The hackathon will be focused on the following topics: 1. Promoting *Neurodata Without Board* (NWB) as a standard format for storing and sharing neurophysiology data in general, and extend it to standardize the storage and distribution of fruit fly brain electrophysiology and calcium imaging data, 2. *Queryable* neurophysiology data: organizing neurophysiology data and metadata in a database to make them easily queryable, and developing comprehensive querying tools accordingly, 3. Incorporating queried neurophysiology data into computational study. The goals are to: 1. create a common language for sharing open neurophysiology data, 2. speed up pattern search in the data that can often be tedious and inefficient to do manually, 3. drive the creation of computational models and the validation of them using open data. The hackathon is aimed at three main groups of participants: neurobiologists, modelers and software engineers. We welcome researchers working on the fruit fly brain as well as those working on other model organisms to participate and broaden the discussion in the hackathon. The Fruit Fly Brain Hackathon 2018 is organized in conjunction with the Columbia Workshop on Brain Circuit, Memory and Computation on March 15-16, 2018. Participants of the hackathon are welcome to attend the workshop. Registration is free but all participants have to register <https://ffbh2018.eventbrite.com/> (*https://ffbh2018.eventbrite.com/ <https://ffbh2018.eventbrite.com/>*). Organizers: Adam Tomkins, Department of Automatic Control and Systems Engineering, University of Sheffield Nikul Ukani, Department of Electrical Engineering, Columbia University Chung-Heng Yeh, Department of Electrical Engineering, Columbia University Yiyin Zhou, Department of Electrical Engineering, Columbia University More information can be found on the hackathon website: http://fruitflybrain.org/hackathons ------------------------------------------------------------ ------------------ Best Regards, Yiyin Zhou, on behalf of the organizers -- Yiyin Zhou Postdoctoral Research Scientist Bionet Group: www.bionet.ee.columbia.edu Department of Electrical Engineering Columbia University

Feb. 19, 2018

10th International Neuroscience Conference - Neuronus 2018 (Krakow, Poland)

by Maciej Kosiło

10th Biennial International Neuroscience Conference - Neuronus 2018 IBRO Neuroscience Forum 20- 24th April 2018 Auditorium Maximum of Jagiellonian University in Krakow, Poland The Organizing Committee of NEURONUS 2018 IBRO Neuroscience Forum cordially invites you to participate in the 10th edition of this international neuroscience conference. Neuronus IBRO Neuroscience Forum is one of the largest neuroscience conferences in Europe, creating a space for international networking between scientists of various academic levels. Previous editions drew in a total of over 2500 participants from over 80 different institutions and universities affiliated with 24 countries worldwide. *This year’s program consists of:* - *6 keynote speakers:* prof. Amir Amedi (Hebrew University, Izrael) prof. Ole Jensen (University of Birmingham, Great Britain) prof. Markus Ullsperger (University of Magdeburg, Germany) prof. Yves De Koninck (Laval University, Canada) prof. Thomas Kuner (University of Heidelberg, Germany) prof. Emma Robinson (University Of Bristol, Great Britain) - *Over 25 invited speakers and 15 oral sessions/symposia, spanning 4 categories:* Cognitive Neuroscience Biological Neuroscience Clinical Neuroscience/Neurology Medical Case Reports All information, including a list of invited speakers, is available on our website: *www.neuronusforum.pl <http://www.neuronusforum.pl/> * Abstract submission deadline: 21st February 2018 Passive registration deadline : 10th April 2018 We look forward to seeing you! Organizing Committee Neuronus 2018 IBRO Neuroscience Forum You can also follow us on social media! Facebook: www.facebook.com/NeuronusForum Twitter: www.twitter.com/neuronusforum <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> Wolny od wirusów. www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>

Feb. 19, 2018

Workshop "Stochastic Models in Ecology and Evolutionary Biology" Venice, 5-7 April 2018 - Second Announcement

by Samir Suweis

Dear All, we invite you to the workshop “Stochastic Models in Ecology and Evolutionary Biology” that will be held in Venice, 5-7 April 2018, at the Istituto Veneto di Scienze, Lettere ed Arti. Aim of the workshop is to bring together scientists with different background - people from biology, physics and mathematics - interested in stochastic models in ecology and evolutionary biology, to discuss issues and exchange methods and ideas. A partial list of topics includes: stochastic population dynamics, branching processes, robustness and adaptability of ecosystems, resilience and criticality of ecological systems, models and prediction of biodiversity, molecular evolution, and microbial community dynamics. Invited Speakers (in alphabetical order): J.-F. Arnoldi, E. Baake, J. Dalmau, J. Friedman, A. Lambert, M. Loreau, P. Metha, A. Sanchez, B. Trubenova, I. Mizrahi* (*tbc) The cost for workshop attendance will be 90 Euro, which includes coffee breaks and workshop material. We will also have contributed talks and posters sessions. The call of abstracts will close on March 2, 2018. For abstracts submission use the following EasyChair link: https://easychair.org/conferences/?conf=smeeb2018 <https://easychair.org/conferences/?conf=smeeb2018> Information on accommodation and workshop programme are available the workshop website <http://www.pd.infn.it/~maritan/veniceworkshop/veniceworkshop.html> Please help us to promote this meeting by forwarding this email to anyone you know might be interested, and especially bring this announcement to the attention of your students or post-docs, who are those most likely not to be on our mailing lists. Apologies if you receive this message multiply. There are 2 free waiver for Ph.D. students and young post-docs offered by Entropy Journal. To apply for the fee waiver, send your abstract through the Easy Chair link in the Abstract submission section, and send an email with your CV to “liph.unipd(a)gmail.com". On the behalf of the workshop organizers, Amos Maritan & Samir Suweis LIPh lab University of Padova http://www.pd.infn.it/~maritan/index.html <http://www.pd.infn.it/~maritan/index.html> Samir Suweis, Ph.D. https://impactstory.org/u/SamirSuweis <https://impactstory.org/u/SamirSuweis> @SamirSuweis Research Scientist (RTDa) LIPh Lab, Physics Department, University of Padova Tel: +39 049 827 72 51 www.pd.infn.it/~maritan/people/Samir/samir.html

Feb. 19, 2018

Book Announcement: Elements of Neurogeometry.

by Jean Petitot

Apologies for multiple postings. Dear Colleagues, The following book is now available: "Elements of Neurogeometry. Functional architectures of vision" (Springer). This book describes several mathematical models of the primary visual cortex, referring them to a vast ensemble of experimental data and putting forward an original geometrical model for its functional architectures Using concepts as wavelet analysis; contact, symplectic, and sub-Riemannian geometry, it provides a systematic interpretation of a number of important neurophysiological observations in a welldefined mathematical framework. More information (in particular the Table of contents) can be found on the following web pages: <http://www.springer.com/fr/book/9783319655895>http://www.springer.com/fr/book/9783319655895 <http://jeanpetitot.com/Petitot_Springer/9783319655895-t1(contents).pdf>http://jeanpetitot.com/Petitot_Springer/9783319655895-t1(contents).pdf With my best regards, Jean Petitot

Feb. 19, 2018

Postdoctoral position in human intracranial electrophysiology

by Shuo Wang

[Apologies for multiple posting] We invite applicants with strong motivation in investigating the neural mechanisms of visual attention to apply for a postdoctoral position at the Rockefeller Neuroscience Institute (RNI), West Virginia University. The applicant will work on intracranial single-unit recordings from human subjects, investigating questions related to visual saliency and social attention in autism. This will include experimental work with neurosurgical patients (electrophysiology and behavior), data processing and analysis, spike-train analysis, and experimental design. The applicant will have access to state-of-the art equipment, facilities and analytical methods and this research will be in a highly collaborative environment. The applicant will not only collaborate with investigators at the RNI, but also be part of an established team of investigators at both Cedars-Sinai Medical Center (Dr. Ueli Rutishauser) and the California Institute of Technology (Dr. Ralph Adolphs), with ample opportunity to learn new techniques and methods. Candidates should have strong programming (Matlab or similar) skills. Expertise in machine learning is desired. Individuals with previous human intracranial EEG experience and/or macaque single neuron recordings that wish to expand into human single-unit recordings are encouraged to apply. For further information, please contact Dr. Shuo Wang at shuo.wang(a)mail.wvu.edu. Further information about the lab can be found at https://sites.google.com/site/shuowangsocialneuroscience/

Feb. 16, 2018

Post-Doctoral Fellow, EEG/MEG Processing & Rehab, University of Maryland, Baltimore

by Abarro, Janice

The University of Maryland School of Medicine, Department of Physical Therapy & Rehabilitation Science, is pleased to announce the availability of post-doctoral research fellowships through the U.S. Administration for Community Living, National Institute of Disability, Independent Living, and Rehabilitation Research, University of Maryland Advanced Neuromotor Rehabilitation Research Training Program, in collaboration with Bioengineering Department, University of Maryland, College Park. The preferred applicant will have a recent doctoral degree, experience in working with EEG/EMG signal processing and rehabilitation robotics, with applications to neurorehabilitation of patients with neurological disorders. To apply, applicants should send a cover letter to include a statement of career goals, CV, and contact information for three references to: Janice Abarro, Research Coordinator jabarro(a)som.umaryland.edu Starting date: Immediate or negotiable. From: Abarro, Janice Sent: Thursday, February 15, 2018 2:37 PM To: 'comp-neuro(a)neuroinformatics.be' <comp-neuro(a)neuroinformatics.be> Subject: Post to list request Importance: High Hello, Please find the attached job posting to be listed. Please note the postings are attached as a word.doc and .pdf for you to choose the document that meets your needs for posting. We kindly thank you for offering this posting permission. Kind regards, Janice Janice Abarro Research Coordinator Physical Therapy and Rehabilitation Science jabarro(a)som.umaryland.edu<mailto:jabarro@som.umaryland.edu> [http://medschool.umaryland.edu/media/SOM/Offices-of-the-Dean/Public-Affairs…]

Feb. 16, 2018

Postdoc Position: Decision-making in dynamic environments (U Penn/U Houston/CU Boulder)

by Zachary Kilpatrick

We are seeking a postdoctoral fellow to join an NIH/NSF funded interdisciplinary project that includes Joshua Gold (University of Pennsylvania), Krešo Josić (University of Houston), and Zack Kilpatrick (University of Colorado, Boulder). All three of us will be at the Cosyne meeting in Denver (March 1-4, 2018), so please contact us if you would like to find a time to discuss the position in person. Our aim is to understand how the brain accumulates evidence in dynamic environments. The project is guided by the overriding hypothesis that brain networks involved in decision-making computations incorporate learned expectations of the environment to implement adaptive decision-making. We seek a candidate who can work at the interface of experimental, computational, and theoretical neuroscience. As part of an interdisciplinary team, The candidate will develop models of neural circuits that approximate normative evidence accumulation in dynamic environments. The candidate will also help to validate these models, using behavioral data from humans and neural recordings from primates performing dynamic decision tasks. For further information please contact Krešimir Josić (josic(a)math.uh.edu <mailto:josic@math.uh.edu>) or Zack Kilpatrick (zpkilpat(a)colorado.edu <mailto:zpkilpat@colorado.edu>)

Feb. 16, 2018

Several permanent positions in robotics coming up in Plymouth/UK

by Thomas Wennekers

[Apologies for cross-posting] Dear colleagues, The University of Plymouth is seeking to fill *multiple positions* for* Lecturer/Associate Professor in Robotics*. All positions are full-time and of a permanent nature. The School of Computing, Electronics and Mathematics offers a wide range of degree programmes related to Technology in the areas of Robotics, Electronics, Computer Science and Mathematics. The School provides a stimulating teaching and research environment with strong connections to business and industry and offers excellent employment prospects for our graduates. We have a well-established interdisciplinary research base which covers: Centre for Robotics and Neural Systems (CRNS); Security, Communications & Networks; Nanotechnology & Electronics Research and Development. We have vacancies for enthusiastic, innovative and dynamic individuals to join our vibrant School to support Robotics and Machine Learning, especially as applied to solving real-world problems by building systems that can operate in close proximity to people. Areas of interest include (but are not limited to) the development of Soft Robotics, Autonomous Mobile Platforms, Human-Robot Interaction, and Machine Vision Systems using Deep Learning. One current focus in Plymouth is the design and construction of Agricultural Robots for fruit and vegetable harvesting. Applications are invited from experienced academics and/or professional engineers, who can demonstrate a commitment and enthusiasm for innovation in higher education and to the development of the next generation of Professional Engineers. You must have undergraduate and postgraduate degrees in relevant disciplines (such as Engineering/Maths/Physics/Computer Science) together with an international profile and reputation for research excellence. As well as carrying out cutting edge research, you will supervise and contribute to training of Research Assistants (RAs) and PhD students, as well as contributing to teaching within the BEng/MEng/MSc in Robotics, as well as other courses within the School. The Electronics and Robotics subject groups are renowned for excellence in producing high quality practical engineers and you should be able to support hardware and software projects. Apply here: https://hrservices.plymouth.ac.uk/tlive_webrecruitment/wrd/run/ETREC107GF.o… Contact for informal discussion: Dr Ian Howard, ian.howard(a)plymouth.ac.uk Further information about the school and its courses is available at www.plymouth.ac.uk/compmath with details of our research centre available at www.plymouth.ac.uk/research/crns Closing date: *12midnight, 1st March 2018.* The University of Plymouth is committed to an inclusive culture and respecting diversity, and welcomes applications from all sections of the community and is a Stonewall diversity champion. The University holds a Bronze Athena SWAN Award which recognises commitment to advancing women's careers in STEMM academia. ----------------------------------------- ________________________________ [http://www.plymouth.ac.uk/images/email_footer.gif]<http://www.plymouth.ac.uk/worldclass> This email and any files with it are confidential and intended solely for the use of the recipient to whom it is addressed. If you are not the intended recipient then copying, distribution or other use of the information contained is strictly prohibited and you should not rely on it. If you have received this email in error please let the sender know immediately and delete it from your system(s). Internet emails are not necessarily secure. While we take every care, Plymouth University accepts no responsibility for viruses and it is your responsibility to scan emails and their attachments. Plymouth University does not accept responsibility for any changes made after it was sent. Nothing in this email or its attachments constitutes an order for goods or services unless accompanied by an official order form.

Feb. 14, 2018

PhD / PostDoc position in the field of Learning Systems at Ulm University

by Daniel Braun

In the *Institute of Neural Information Processing* of the Faculty of Engineering, Computer Science and Psychology of Ulm University there will be a *PhD / PostDoc position in the field of Learning Systems * to be filled as soon as possible in the newly established research group on “Learning Systems”. The group is interested in the mathematical foundations of intelligent behavior in cognitive systems, including both biological and artificial systems, in particular the information-processing principles underlying learning and decision-making. This requires a combined theoretical and experimental approach. In our theoretical line of work we use methods from machine learning, statistics, physics, information theory and decision theory to investigate the effects of limited resources on learning and decision-making (“bounded rationality”). In our experimental line of work we investigate sensorimotor behavior in humans by using virtual reality technology and robotic interfaces to study learning and decision-making quantitatively under controlled conditions. This interdisciplinary approach unites aspects from both basic and applied research. On a basic level we aim at a quantitative understanding of embodied intelligence, in particular the emergence of cognition from sensorimotor interactions by processes of abstraction and structure learning. On an applied level we are interested in both autonomous robotic systems and human-machine-interactions, as sensorimotor learning and decision-making in artificial systems constitute a cutting-edge technical challenge. The research group is supported by the ERC-project BRISC (Bounded Rationality in Sensorimotor Coordination) https://erc.europa.eu/projects-figures/erc-funded- projects/results?search_api_views_fulltext=BRISC funded by the excellence programme of the European Research Council, in which we aim at a novel information-theoretic understanding of sensorimotor interactions in psychological and technical systems. Ulm University with its more than 10,000 students is Baden-Württemberg’s youngest university. It offers attractive career prospects in a highly innovative research, teaching and work environment at the same time facilitating the reconciliation of work and family life. Embedded within the novel international “Cognitive Systems”-Master’s course, the research group “Learning Systems” is part of the university’s priority programme on human-machine-interaction. Beyond the university, there are plenty of opportunities to cooperate with international partners in Great Britain and the United States. The applicants should have a strong mathematical background, hold a Diploma or Master’s degree in natural science, mathematics, economics, psychology, computer science, engineering or similar and have a keen interest in artificial and natural intelligence. The positions are paid according to German tariff TV-L E13. Exceptional candidates with a Bachelor’s degree can also be considered, albeit with an individual pay scale regulation. The University of Ulm is an equal opportunity employer: Handicapped individuals are strongly encouraged to apply, and so are women in areas in which they are underrepresented. The positions will be filled as soon as possible. Candidates should send a CV, a brief statement of interest and a copy of their highest degree to Prof. Dr. Dr. Daniel Alexander Braun daniel.braun(a)uni-ulm.de -- Prof. Dr. Dr. Daniel Alexander Braun Institute of Neural Information Processing Faculty of Engineering, Computer Science and Psychology Ulm University James-Franck-Ring D-89081 Ulm Germany phone: +49 (0)731 50 - 24150 <%2B49%20%280%29731%2050%20-%2024158> fax: +49 (0)731 50 - 24156 email: daniel.braun(a)uni-ulm.de

Feb. 14, 2018

In memoriam Jean-Marie Cabelguen, January 30 2018.

by Auke Ijspeert

[apologies in case of multiple copies] Dear Colleagues and Friends, It is with a great sadness that we heard that Professor Jean-Marie Cabelguen passed away on January 30, 2018 after battling cancer. He passed away peacefully surrounded by his family. As a researcher and lecturer in neurophysiology, he made profound contributions towards understanding the neural circuits underlying locomotion in vertebrate animals. A warm and passionate person, Jean-Marie was greatly appreciated by the scientific community to which he belonged. We created a website https://biorob2.epfl.ch/pages/cabelguen/ to allow his colleagues and friends to share some thoughts and memories about him. If you would like to do so, please write your messages (short or long, in any language) as an email to inmemoriam.jmc(a)epfl.ch <mailto:inmemoriam.jmc@epfl.ch>, and they will be posted here. Thank you. Best wishes, Auke Ijspeert, Vanessa Charrier, Dimitri Ryczko, Alessandro Crespi -- ----------------------------------------------------------------- Prof Auke Jan Ijspeert Biorobotics Laboratory EPFL-STI-IBI-BIOROB, ME D1 1226, Station 9 EPFL, Ecole Polytechnique Fédérale de Lausanne CH 1015 Lausanne, Switzerland Office: ME D1 1226 Tel: +41 21 693 2658 Fax: +41 21 693 3705 www:http://biorob.epfl.ch Email:Auke.Ijspeert@epfl.ch -----------------------------------------------------------------

Feb. 14, 2018