- Comp-neuro - lists.cnsorg.org

Discovering dynamic functional networks in the human neonatal brain with electric source imaging

by Steve Mehrkanoon

Dear Colleagues, We announce new findings in the human brain dynamics: Title: Discovering dynamic functional networks in the human neonatal brain with electric source imaging <http://biorxiv.org/cgi/content/short/545616v1?rss=1> https://www.biorxiv.org/content/10.1101/545616v1?rss=1 Kind regards Steve Dr Steve Mehrkanoon Senior Mathematical Neuroscientist, The University of Queensland Advance Queensland Research Fellow, Home: http://researchers.uq.edu.au/researcher/14135 [UQEmailBannerGeneric]

March 2, 2019

EXTENSION: CNS*2019 Call for Abstracts

by Sharon Crook

The abstract submission deadline for CNS*2019 has been extended to Monday March 11, 2019, 11:00 pm Pacific Time. Please remember to renew your OCNS membership and register for the meeting prior to abstract submission. CNS*2019 Call for Abstracts Organization for Computational Neurosciences (OCNS) 28th Annual Meeting Barcelona, Catalonia, Spain July 13-17, 2019 Local Organizers: Alex Roxin, Klaus Wimmer, Albert Compte, Jaime de la Rocha, Gemma Huguet Ramon The main meeting begins the evening of Saturday July 13 and runs through Tuesday July 16. It will be preceded by a day of tutorials (Saturday July 13) and followed by workshops (Tuesday July 16 mixed with the main meeting and Wednesday July 17 workshops only). Invited Keynote Speakers: Ed Bullmore, University of Cambridge Kenji Doya, Okinawa Institute for Science and Technology Mavi Sanchez-Vives, Universitat de Barcelona Ila Fiete, University of Texas Note that one of the authors must register as sponsoring author for the main meeting before abstract submission. In case the abstract is not accepted for presentation, the registration fee will be refunded. Submitted abstracts are used for creating the program and for publication. Please follow the formatting guidelines on the submission site. Travel awards are available for student and postdoc members of OCNS. Please apply using the checkbox on the abstract submission form and note that an extended abstract is required when applying for a travel award or oral presentation format. Registration: https://ocns.memberclicks.net/index.php?option=com_mc&view=mc&mcid=form_259… Abstract Submission: https://www.cnsorg.org/cns-2019-abstract-submission For up-to-date conference information, please visit: https://www.cnsorg.org/cns-2019-quick -------------------------------------------------------------------------------------------------------------------------------- OCNS is the international member-based society for computational neuroscientists. Become a member to be eligible for travel awards and more. Visit our website for more information: http://www.cnsorg.org

March 1, 2019

Postdoctoral position in cortical circuit modelling (Krembil Centre for Neuroinformatics)

by Etay Hay

Postdoctoral position in cortical circuit modelling (Krembil Centre for Neuroinformatics) Hay lab, at Krembil Centre for Neuroinformatics and the University of Toronto, is currently accepting applications for a postdoctoral position in using computational models to study the effects of cellular mechanisms on cortical circuit activity and brain recordings, in health and disease. We will simulate biophysical models of cortical circuits, constrained with data from rodents and humans, to study the effect of synaptic connectivity and dendritic ion channels on cortical circuit activity and processing. In turn, we will characterize the predicted signatures of the effects in measurable signals of cortical circuit activity, which will include the spatio-temporal propagation of neuronal spiking activity, LFP in different cortical layers, and EEG. The position will be up to 3 years, renewed yearly. Applicants should have strong and relevant peer-reviewed publications, particularly modelling studies of spiking neuronal networks (conductance-based or integrate-and-fire), and experience in using NEURON and Matlab. Hay lab is located at Krembil Centre for Neuroinformatics (KCNI), which is part of the Centre for Addiction and Mental Health (CAMH). The centre is fully affiliated with the University of Toronto, and is situated at the downtown campus. Neuroscience research at KCNI offers a unique environment that is both specialized and collaborative, spanning computational genomics, brain circuits, whole-brain networks, and behavior. Interested applicants should send their CV to Dr. Etay Hay, at: etay.hay(a)camh.ca Etay Hay, PhD Independent Scientist, Krembil Centre for Neuroinformatics, CAMH Assistant Professor, Department of Psychiatry, University of Toronto www.haybrainlab.com CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message. AVIS DE CONFIDENTIALITÉ : Ce message électronique, ainsi que tout fichier qui y est joint, est reserve à l'usage exclusif du destinataire visé et peut contenir des renseignements confidentiels et privilégiés. Toute lecture, utilisation, divulgation ou distribution non autorisée est interdite. Si vous n'êtes pas le destinataire visé, veuillez en aviser l'expéditeur par retour de courriel et détruire toutes les copies du message original.

March 1, 2019

Postdoctoral positions in computational neuroscience

by Maxim Bazhenov

Applications are invited for post-doctoral research position in the laboratory of Dr. Maxim Bazhenov at the University of California, San Diego to study cellular and circuit level mechanisms behind large-scale brain electrical activity. This project involves close collaboration with experimental laboratories. The ultimate goal of the work is to develop detailed multi-scale models of how human MEG and EEG are generated, including channels, synapses, neurons, and networks. Specific focus of the project is on sleep rhythms. The successful candidate will be responsible for the design of the anatomically realistic brain network models based on experimental data. These models will be used to understand network dynamics behind MEG and EEG rhythms. This project will be developed in close interaction with other projects in the lab focusing on understanding the role of sleep in memory and learning and deriving novel learning principles that can be applied in artificial intelligence and machine learning. Qualified applicants are expected to have experience in computational/theoretical neuroscience and neural modeling. Programming experience in C/C++/ PYTHON/MATLAB is required. The University of California offers excellent benefits. Salary is based on research experience. Applicants should send a brief statement of research interests, a CV and the names of three references to Maxim Bazhenov at mbazhenov(a)ucsd.edu (I will be at Cosyne workshops on March 3-5, and I would be glad to meet with interested candidates) -- Maxim Bazhenov, Ph.D. Professor, Department of Medicine, Neurosciences Graduate Program, UCSD, School of Medicine http://www.bazhlab.ucsd.edu/

March 1, 2019

PhD fellowships in Neuroscience at Unipd

by Samir Suweis

The Padova Neuroscience Center (http://pnc.unipd.it/ <http://pnc.unipd.it/admission/>) is delighted to announce its second call for at least 10 fully funded PhD fellowships in Neuroscience at the University of Padova. The multidisciplinary PhD program includes research lines and methods from Imaging, Cellular, Cognitive, Translational and Computational Neuroscience. The time-frame for the application is 8th of April-10th of May 2019 (at 1 pm). The details for the application will be published on the 8th of April at: http://pnc.unipd.it/admission/ <http://pnc.unipd.it/admission/>. Stay tuned! Interested candidate can also contact me suweis(a)pd.infn.it <mailto:suweis@pd.infn.it> for further information. Please forward this message to collaborators and students. Thanks **** Padova University is one of the oldest and most prestigious universities in Europe - established in 1222. The University of Padova invests significantly in research activities and projects. Padova, is a small and beautiful town, shaped around the University. Low living costs, great food, and you can bike everywhere! Samir Suweis, Ph.D. https://impactstory.org/u/SamirSuweis <https://impactstory.org/u/SamirSuweis> @SamirSuweis Research Scientist (RTDa) LIPh Lab, Physics Department, University of Padova Tel: +39 049 827 71 74 www.pd.infn.it/~maritan/people/Samir/samir.html

March 1, 2019

Workshop: Structure and disorder: From random connections to functional circuits, July 10-12 2019, Göttingen

by Rainer Engelken

Dear Colleagues, We are pleased to draw your attention to the fourth edition of the workshop on advanced methods in theoretical neuroscience. The programme is intended for the exchange of new approaches and methods, and presentations that will spark new ideas for future developments. Please see the details below or at https://www.neuro-theory.org/ Best regards, Viola Priesemann, Rainer Engelken, Farzad Farkhooi and Jonathan Kadmon *Structure and disorder: From random connections to functional circuits* July 10-12, 2019, Göttingen (Tutorials: July 9th) https://www.neuro-theory.org/ This workshop will focus on the inherent difficulties of studying the underlying dynamics that guide the synaptic organization in neuronal circuits. The forum is intended for researchers to not only share results but also survey and discuss recent advances in methods and to pinpoint limitations of the existing theoretical tools. These exchanges will be complemented by poster presentations from students and postdocs. A day of tutorial sessions will be held prior to the main meeting, covering some of the background and methods discussed in the workshop. ** Confirmed speakers ** Yashar Ahmadian (Oregon) Nicolas Brunel (Duke) Carson C Chow (NIH) Carina Curto (Penn State) Julijana Gjorgjieva (MPI Brain, Frankfurt) Valerio Mante (University of Zurich) Francesca Mastrogiuseppe (UCL-Gatsby Unit) Raoul Martin Memmesheimer (Universität Bonn) Andreas Neef (Göttingen) Cengiz Pehlevan (Harvard) Kanaka Rajan (Mount Sinai) Maria V. Sanchez-Vives (Barcelona) Silvia Scarpetta (Salerno) Elad Schneidman (Weizmann Institute) Jordi Soriano (Barcelona) Tali Tishbi (Hebrew University) ** Registration ** Accepting application through April 30. Space is limited. Preference will be given to presenting authors (posters) and by order of application so early registration is encouraged. A small fee of 50 Euro (+ 20 Euros for tutorials) will be collected upon confirmation. Apply now <https://goo.gl/forms/JEJWuWO1wnutYwJh1> ** Tutorials ** The tutorials will be held prior to the main meeting on July 9, 2019. The tutorials aim to introduce some mathematical techniques relevant to the workshop talks. ** Poster submission/short talks ** Poster submissions are highly encouraged. Presenting authors will receive higher priority for acceptance. Some abstracts may be selected for short or full talks in the workshop. Organizers: Viola Priesemann (MPI for Dynamics and Self-Organization, Goettingen) Rainer Engelken (Columbia University) Farzad Farkhooi (Technische Universität Berlin) Jonathan Kadmon (Stanford University) -- ************************************************************* Rainer Engelken Mortimer B. Zuckerman Mind Brain Behavior Institute Columbia University m: 9178648856 pgp fingerprint: F94E 83D9 77AB 76F6 15E9 1503 3AD6 FCDC 410B 14F2 re2365(a)columbia.edu ctn.zuckermaninstitute.columbia.edu *************************************************************

March 1, 2019

Kosice Neuroscience Workshop, 3 - 5 June, 2019

by Norbert Kopco

SAVE THE DATE! The 4th Workshop on */"Cognitive neuroscience of auditory and cross-modal perception"/* 3 - 5 June 2019 Kosice, Slovakia http://pcl.upjs.sk/workshop2019 *Objectives* ·This workshop will include research talks (and introductory lectures) on a range of topics related to the *neural processes of auditory, visual and cross-modal perception*. ·The main focus of this year’s workshop will be on *adaptation, learning and training in spatial perception and cognition*. ·The talks will illustrate the *multidisciplinary character of cognitive neuroscience research*, covering behavioral, neuroimaging, and modeling approaches, as well as applications of the research in auditory prosthetic devices. ·The workshop targets *early-stage and advanced students and young researchers*. It will provide ample opportunities for direct interactions between the lecturers and the attendees. The workshop will follow-up on our previous workshops organized in 2014, 2015 and 2017 <http://pcl.upjs.sk/workshop>. *Format* 1/2-day sessions, including invited talks, contributed talks, and posters, focusing on the topics of *Adaptation*,*Learning and training*, *Auditory and cross-modal perception (general)*, and *Vision and other topics in computational and cognitive neuroscience*. Non-scientific program (outings to tourist destinations near Kosice) will take place on the day before and day after the workshop. *Venue* Lecture hall 2.17T,Faculty of Science / Technicom building, P. J. Šafárik University, Jesenná 5, 04001 Košice Slovakia <https://goo.gl/maps/6m3GC3iJNeA2>. *Organizers* Norbert Kopco, P. J. Safarik University in Košice <https://pcl.upjs.sk/noro/> Erick Gallun, National Center for Rehabilitative Auditory Research, Portland and OHSU <http://www.ncrar.research.va.gov/AboutUs/Staff/gallun.asp>Piotr Majdak, Austrian Academy of Science, Vienna <https://www.kfs.oeaw.ac.at/index.php?option=com_content&view=article&id=56:…> Aaron Seitz, University of California, Riverside <http://faculty.ucr.edu/%7Easeitz/> Invited talks and talks by ALT consortium (tentative): * *Jana Basnakova*, Slovak Academy of Sciences <https://www.sav.sk/?lang=sk&doc=user-org-user&user_no=5398&lang_change=en> ** * *Virginia Best <http://cns.bu.edu/~ginbest/>*, Boston University <http://cns.bu.edu/~ginbest/> * *Lauren Calandruccio, <http://caslabs.case.edu/sparlab/>*Case Western Reserve University, Ohio <http://caslabs.case.edu/sparlab/> * *John Culling, <http://cullinglab.org/>*Cardiff University <http://cullinglab.org/> * *Inyong Choi, <https://clas.uiowa.edu/comsci/people/inyong-choi>*The University of IOWA – “Adapting to simultaneous electric and acoustic stimulation for word-in-noise recognition in listeners with single-sided deafness.” <https://clas.uiowa.edu/comsci/people/inyong-choi> * *Erick Gallun <http://www.ncrar.research.va.gov/AboutUs/Staff/gallun.asp>*, National Center for Rehabilitative Auditory Research, Portland and OHSU <http://www.ncrar.research.va.gov/AboutUs/Staff/gallun.asp> * *Catarina Hiipakka, <https://www.aalto.fi/people/catarina-macedo-mendonca-hiipakka>* Alto University, Finland – “Changes in auditory space following audiovisual experience.” <https://www.aalto.fi/people/catarina-macedo-mendonca-hiipakka> * *Andrej Kral, <http://neuroprostheses.com/>*Hannover Medical School, Germany <http://neuroprostheses.com/> * *Norbert Kopco, <https://pcl.upjs.sk/noro/>*Safarik University, Slovakia <https://pcl.upjs.sk/noro/> * *Bernhard Laback <https://www.kfs.oeaw.ac.at/index.php?option=com_content&view=article&id=54&…>*, Austrian Academy of Sciences <https://www.kfs.oeaw.ac.at/index.php?option=com_content&view=article&id=54&…> * *Petr Marsalek <http://www.karlin.mff.cuni.cz/~marsalek/>*, Charles University of Prague and Max Planck Institute for the Physics of Complex Systems <http://www.karlin.mff.cuni.cz/~marsalek/> * *Piotr Majdak <https://www.kfs.oeaw.ac.at/index.php?option=com_content&view=article&id=56:…>*, Austrian Academy of Sciences <https://www.kfs.oeaw.ac.at/index.php?option=com_content&view=article&id=56:…> * *John van Opstal, <https://www.ru.nl/english/people/opstal-a-van/>*Radbound University, Netherlands – “Perceived Target Range Shapes Human Sound-Localisation Behaviour” <https://www.ru.nl/english/people/opstal-a-van/> * *Josefa Oberem, <http://www.akustik.rwth-aachen.de/cms/Technische-Akustik/Das-Institut/Team/…>*RWTH Aachen University, – “Individual dynamic binaural reproduction in complex acoustic scenes: Understanding mechanisms in auditory attention.” <http://www.akustik.rwth-aachen.de/cms/Technische-Akustik/Das-Institut/Team/…> * *Chris Stecker, <http://spacelab.spatialhearing.org/>*Vanderbilt University Medical Center <http://spacelab.spatialhearing.org/> * *Dan Sanes, <http://www.cns.nyu.edu/corefaculty/Sanes.php>*New York University <http://www.cns.nyu.edu/corefaculty/Sanes.php> * *Nelli Salminen, <https://people.aalto.fi/nelli.salminen>*Alto University, Finland <https://people.aalto.fi/nelli.salminen> * *Aaron Seitz <http://faculty.ucr.edu/~aseitz/>*, University of California, Riverside <http://faculty.ucr.edu/~aseitz/> * *Filip Smolik, *Czech Academy of Sciences <http://www.psu.cas.cz/people-contacts/cv/smolik/index.html> * *Brigitta Toth, <http://www.ttk.mta.hu/en/phonebook/brigitta-toth>*Hungarian Academy of Sciences <http://www.ttk.mta.hu/en/phonebook/brigitta-toth> * *Bev Wright,* Northwestern University <https://communication.northwestern.edu/faculty/BeverlyWright> * more TBA *Travel, accommodation, visitor information* see workshop webpage: http://pcl.upjs.sk/workshop2019/ *Registration* The workshop is open to all interested students/scientists. Registration is free of charge but required. To register, please send an email to kogneuro(a)gmail.com stating your name and affiliation and the dates on which you are planning to attend. All accepted abstracts will be published on the workshop website. No proceedings will be published. In case you would like to have a presentation please send us an abstract (up to 200 words; also indicate whether you prefer poster or oral presentation) no later than May 10, 2019. This workshop is supported by theEU H2020-MSCA-RISE-2015 project #691229 <http://pcl.upjs.sk/grants/alt/>.

Feb. 28, 2019

Postdoctoral opening at Brandeis University

by Thomas Fai

Dear Colleagues, There is a postdoctoral position available in my group in the Mathematics department at Brandeis University, for a research project involving the modeling and numerical simulation of membrane-bound vesicle transport inside of neurons. The position is for up to 2 years and is funded by an NIH postdoc training grant in Neuroscience. Funding is limited to US citizens or permanent residents. Candidates should be available to start by June 2019. Please circulate this advertisement (details below) to any potential candidates. For further info, contact me directly at tfai(a)brandeis.edu. Thank you, Thomas Fai ==================================================== A postdoctoral position is available at Brandeis University to work on mathematical modeling and simulation of membrane-bound vesicle transport inside of neurons (hosted by Thomas Fai). Mathematical techniques include PDE-based models of cell mechanics and fluid dynamics, numerical methods for fluid-structure interaction, dynamical systems, and asymptotics. Potential research topics include building stochastic models to assess the importance of noise, using image processing of experimental data to characterize the behavior in real dendritic spine geometries, and exploring the mechanisms of synaptic strengthening and atrophy. The postdoc will join the Mathematics Department at Brandeis University ( http://www.brandeis.edu/departments/mathematics/) and have strong ties to the Neuroscience group (http://www.bio.brandeis.edu/) The position, which is for up to 2 years contingent on funding and satisfactory progress, is funded through an NIH postdoc training grant in Neuroscience. Postdocs in this program participate in seminars and journal clubs, obtain mentoring experience, and are expected to apply for external awards during the first year. Funding is limited to US citizens or permanent residents. Candidates should be prepared to start no later than June 16, 2019. Candidates should hold a Ph.D (in neuroscience, mathematics, physics, engineering, or a related topic) by the starting date, have an excellent track record of scholarship, with experience in numerical simulations and interest in learning continuum mechanics and/or fluid dynamics. For further information, contact Thomas Fai (tfai(a)brandeis.edu)

Feb. 28, 2019

Full Professor in Psychology, University of St. Andrews

by Tom Otto

Please see the job opening for a Professorship in Perception, Cognition and Action. Kind regards, Thomas Otto > We are advertising for a Full Professor position, at the School of > Psychology and Neuroscience, University of St. Andrews, Scotland. > > > https://www.vacancies.st-andrews.ac.uk/Vacancies/W/6800/0/220320/889/profes… > > Research in the School is split into 4 major groupings, one of them is > Perception, Cognition and Action. For this position we are looking for > established academics with a world class reputation who work in any > area that links to work in this grouping in the School. > > https://www.st-andrews.ac.uk/psychology/research/perception/ > > > St. Andrews is a small town, in a very rural, beautiful location on > the east coast of Scotland, yet less than an hour from the imposing > city of Edinburgh. It's great environment in which to work, come and > join us. > > > > If you have any questions about the position, don't hesitate to > contact me. > > > regards > > Julie Harris > > > > > Prof. Julie M. Harris > School of Psychology and Neuroscience > University of St Andrews > South St. > St. Andrews > KY16 9JP > > Tel +44-1334-462061 > Fax +44-1334-463042 > Web: http://julieharrislab.wp.st-andrews.ac.uk/ > <http://julieharrislab.wp.st-andrews.ac.uk/> > > The University of St. Andrews is a charity > registered in Scotland: SC012532. -- Dr. Thomas Otto University of St Andrews School of Psychology and Neuroscience St Mary’s Quad, South Street, St Andrews, KY16 9JP, Scotland Phone: +44 (0)1334 462091 http://lclab.wp.st-andrews.ac.uk/ .

Feb. 28, 2019

Modeller's Workshop for the Brain Dynamics Toolbox

by Stewart Heitmann

Modeller’s Workshop for the Brain Dynamics Toolbox Online Course March 1-22, 2019 https://bdtoolbox.org/p/modellers-workshop/ Learn the art of programming differential equations in Matlab using the Brain Dynamics Toolbox. This is an on-line course for modellers who wish to simulate their own dynamical systems using the graphical toolbox. Participants are taken step-by-step through the process of programming differential equations and solving them numerically. Participants learn to program custom systems of Ordinary Differential Equations, Partial Differential Equations, Delay Differential Equations and Stochastic Differential Equations. Example code is provided in all cases. Early-bird enrolments ($100) close Friday 15th March, 2019. Late enrolments ($150) close Friday 22nd March,2019.

Feb. 28, 2019