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- 16 participants
- 7399 messages
[meetings] [LM2018] last week for submission!
by Vicky Vouloutsi
Dear colleagues,
Please find below the second call for participation to the 7th edition of
Living Machines. Apologies for cross-posting but please share this
announcement with your colleagues.
*Deadline extended: March 30*
Looking forward to seeing you in Paris!
------------------------------------------------------------
------------------------------------------
*third Call for Papers, Satellite Events and Sponsors*
*Living Machines VII: The 7th International Conference on Biomimetic and
Biohybrid Systems*
*16 – 19 July 2018*
To be hosted at the Museum National D’Histoire Naturelle,
Grand Amphitéâtre du Museum, and UPMC, Paris, France, EU
Accepted papers will be published in
Springer *Lecture Notes in Artificial Intelligence*
Submission deadline: March 30th, 2018
http://livingmachinesconference.eu/2018
____________________________________________________________
_________________
*ABOUT LIVING MACHINES 2018*
The development of future real-world technologies will depend strongly on
our understanding and harnessing of the principles underlying living
systems and the flow of communication signals between living and artificial
systems.
*Biomimetics* is the development of novel technologies through the
distillation of principles from the study of biological systems. The
investigation of biomimetic systems can serve two complementary goals.
First, a suitably designed and configured biomimetic artefact can be used
to test theories about the natural system of interest. Second, biomimetic
technologies can provide useful, elegant and efficient solutions to
unsolved challenges in science and engineering.
*Biohybrid* systems are formed by combining at least one biological
component—an existing living system—and at least one artificial,
newly-engineered component. By passing information in one or both
directions, such a system forms a new hybrid bio-artificial entity. The
theme of the conference also encompasses biomimetic methods for
manufacture, repair and recycling inspired by natural processes such as
reproduction, digestion, morphogenesis and metamorphosis.
The following are some examples of “Living Machines” as featured at past
conferences:
• Biomimetic robots and their component technologies (sensors,
actuators, processors) that
can interact with their physical and social environments.
• Biomimetic computers and architectures —neuromimetic emulations of
the physiological basis for complex adaptive behaviour.
• Active biomimetic materials and structures that self-organize and
self-repair.
• Nature-based designs and manufacturing processes.
• Biohybrid brain-machine interfaces and neuronal implants and
neuroprosthetics.
• Artificial organs and body-parts including sensory organ-chip
hybrids and advanced prostheses and cyber-physical systems.
• Organism-level biohybrids and symbiosis such as robot-animal or
robot-human systems.
*ACTIVITIES*
The main conference will take the form of a *three-day single-track oral *
and* poster presentation programme*, 17th to 19th July 2018, Museum
National D’Histoire Naturelle, Grand Amphitéâtre du Museum, and UPMC, Paris,
France, EU.
The conference programme will include *five plenary lectures* from leading
international researchers in biomimetic and biohybrid systems, and the
demonstrations of state-of-the-art living machine technologies.
The full conference will be preceded by up to two days of *Satellite Events*
hosted at École Normale Supérieure, Paris.
*SUBMITTING TO LIVING MACHINES 2018*
We invite both *full papers* and *extended abstracts *in areas related to
the conference themes. All contributions will be refereed, and accepted
papers will appear in the Living Machines Proceedings, published in
the* Springer-Verlag Lecture
Notes in Artificial Intelligence.*
Full papers (minimum 8 pages, up to 12 pages) are invited from researchers
at any stage in their career and should present significant findings and
advances in biomimetic or biohybrid research. More preliminary work is
better suited for short paper submission (minimum 4 pages, with a maximum
of ten references and no more than three self-citations). Full papers will
be accepted for either oral presentation (single track) or poster
presentation with a short podium preview. Extended abstracts will be
accepted for poster presentation only.
Authors of the best full papers will be invited to submitted extended
versions of their paper for publication in a special issue of the Taylor &
Francis journal *Connection Science*.
*Satellite events*
Active researchers in biomimetic and biohybrid systems are invited to
propose topics for full or half-day* tutorials, symposia *or *workshops *on
related themes to be held on the 16th July at the École Normale Supérieure
in Paris (Http://www.ens.fr/en)
Attendance at satellite events will attract a small fee intended to cover
the costs of the meeting. There is flexibility about the content,
organisation, and budgeting for these events. Please contact us if you are
interested in organising a satellite event!
*EXPECTED DEADLINES*
March 30th, 2018 Paper submission deadline
April 28th, 2018 Notification of acceptance
May 15th, 2018 Camera-ready copy
July 16th – 19th, 2018 Workshops and Conference
*SPONSORSHIP*
Organisations wishing to sponsor the conference in any way and gain the
corresponding benefits by promoting themselves and their products through
conference publications, conference events, and conference publicity
are encouraged
to contact the organisers to discuss the terms of sponsorship and necessary
arrangements. We also offer a number of attractive options to potential
sponsors.
*VENUE*
Consistent with the Living Machines’ tradition of choosing historical
venues at the crossroads between life and human sciences, this year the
conference will take place at the Museum National D’Histoire Naturelle (
http://www.mnhn.fr) a historical museum located in the heart of Paris that
for almost 400 years has focused on nature and its relationship with
humans. The museum is immersed in history, yet at the heart of current
affairs, and is also working to be projected towards the future. Poster
sessions will be organized at UPMC.
*Organising Committee:*
*Jose Halloy*, Université Paris Diderot (Local Organizing Chair)
*Paul Verschure*, IBEC-BIST (Co-Chair)
*Tony Prescott*, University of Sheffield (Steering Committee)
*Vicky Vouloutsi,* IBEC-BIST, Barcelona (Programme Chair)
*Michael Mangan*, University of Lincoln (Programme Co-Chair)
*Nathan Lepora*, University of Bristol (Communications)
*Anna Mura*, IBEC-BIST, Barcelona (Web and Communications)
*Local* *Organising Committee:*
*Stéphane Doncieux*, Prof. UMPC, ISIR
*Benoît Girard*, DR CNRS, UPMC, ISIR
*Emmanuelle Pouydebat*, DR CNRS, Muséum d’Histoire Naturelle
*Vincent Bels*, Prof. Muséum d’Histoire Naturelle
--
Vicky Vouloutsi, PhD
Postdoc Researcher at the laboratory for Synthetic Perceptive, Emotive and
Cognitive Systems (SPECS)
March 26, 2018
Post-doc positions in Neuromorphic Engineering - SINAPSE/NUS/Singapore
by Andrei Nakagawa
Dear all,
On behalf of the* Singapore Institute for Neurotechnology (SINAPSE)*, I
would like to present an opportunity for Postdoctoral Researchers.
The Singapore Institute for Neurotechnology (SINAPSE) (
www.sinapseinstitute.org) at the National University of Singapore (NUS) is
looking to hire *two* Postdoctoral Research Associates to enhance their
research efforts in *neuromorphic engineering,* *neuromorphic sensing,
robotics and prosthetics. *
The areas of expertise and experience include:
- Integrating multi-modal sensing to improve navigation, manipulation or
movement;
- Deploying machine learning architectures on robotic/prosthetic devices.
- Designing novel mechanisms, for hands and grippers, integrating visual,
tactile and haptic sensing;
- Implementing bimanual object manipulation algorithms;
- Designing spike-based machine learning algorithms.
Candidates should have a PhD in engineering, science or related field, have
experience in designing complex hardware software systems and developing
and applying machine learning architectures for tasks such as object
detection (visual/tactile), object tracking and object manipulation. In
addition, candidates should have good collaborative and communication
skills and be able to work in an interdisciplinary team.
We are seeking for creative and imaginative people that are passionate
about integrating hardware and software to build biologically inspired
systems that perceive, act, and interact with the environment; deploying
state-of-the-art machine learning on devices in the real world.
We are offering competitive salaries contract and relocation assistance.
These are positions without teaching obligations, however applicants with
academic aspirations will have the opportunity to supervise undergraduate
and graduate students, organize and take part in workshops, and electively
get involved in research grants or industry partnerships.
To indicate interest, please send a CV to:
*Dr. Alcimar Soares*
*email: alcimar.soares(a)gmail.com <alcimar.soares(a)gmail.com>.*
*Applications will be accepted until the position is filled.*
*Environment*
SINAPSE is a very exciting place to develop high level and novel research.
The lab brings together engineers, scientists and clinical researchers with
a common goal of making an impact on society, focused on Neurotechnologies
for basic science, clinical application and commercialization. Here, you
would find an array of advanced technology: microelectronics for building
neural interfaces, imaging tools and technologies for studying function and
dysfunction of brain, optical methods for manipulating the nervous system,
cognitive and computational methods for assessing neural/brain function,
robotics for rehabilitation and neuromorphic systems for modeling the
nervous system to inspire the next generation of robots and intelligent
machines. The National University of Singapore (NUS) is the leading
engineering and scientific institution in Asia centered upon education and
basic research.
Kind regards,
*Andrei Nakagawa Silva, MSc*
Singapore Institute for Neurotechnology - SINAPSE
National University of Singapore - NUS
URL: http://www.sinapseinstitute.org
Biomedical Engineering Lab
Federal University of Uberlandia
URL: http://www.biolab.eletrica.ufu.br/en
Contact
Skype: andrei.nakagawa1
Phone: +65 9397-7263
March 26, 2018
[jobs] Start-up in Berlin seeks biologists for multiple open positions (senior and junior)
by Arnab Chakrabarty
Start-up in Berlin seeks biologists for multiple open positions (senior and junior)
neuraltrain GmbH is a newly founded digital health start-up based in Berlin developing innovative, digital mental health solutions.
We are looking for biologist(s)/neuroscientist(s) for one of the current projects on a digital therapy solution in depression and affective disorders. Start dates are as soon as possible.
RESPONSIBILITIES:
* Design, conduct, analyse and present experimental research from the project
* In-depth literature review and meta-analyses; in particular, brain oscillations, psychophysics, perceptual learning, depression, internet-based therapy interventions are topics of relevance
* Identification and establishment of scientific collaboration with academic partners
* Writing reports, grants, publications in English
WE DESIRE:
* PhD in Neurosciences/ Psychology/ Biology; fresh graduates and post-docs are particularly encouraged to apply
* Expertise in the following areas: neuronal oscillations, affective sciences, psychophysics, perceptual learning, EEG, EMG, skin conductance experiments and Depression.
* Programming and some app development experience is a strong plus
* Experience as an independent researcher in any of the above areas
* Knowledge of Python and/or willingness to learn, strong statistical and analytical skills
* Entrepreneurial mentality and an ownership/stakeholder attitude to get things done
* Knowledge of 'key opinion leaders' in depression and psychiatry, psychology, brain oscillations is a plus
You do not have to match all the criteria to apply. We will assess your fit on a case by case basis.
We are an equal opportunities employer and favour diversity.
We offer a young and dynamic working environment in a hip and exciting co-working space called MINDSPACE right in the heart of Berlin. We are a small, but growing team and are very well-connected in the Digital Health ecosystem. We offer enough flexibility to grow personally and professionally.
Location: Berlin
Position: Full-time
If you feel addressed by this job description, feel encouraged to get in touch at chakrabarty(a)neuraltrain.de<mailto:chakrabarty@neuraltrain.de> with your CV and cover letter describing your motivation for the project and digital health.
Dr. Arnab Chakrabarty
Founder and CEO,
neuraltrain GmbH
---
Contact Details:
Dr. Arnab Chakrabarty
CEO, neuraltrain GmbH
Phone: +49 (0)160 97041155
Email: chakrabarty(a)neuraltrain.de<mailto:chakrabarty@neuraltrain.de>
---
Company Details:
Address: neuraltrain GmbH, c/o F.H. Incubator GmbH, Friedrichstr. 68, 10117 Berlin, Germany
Registered at Handelsregister des Registergerichts Charlottenburg; Registernummer: HRB 191630 B
UStID: Pending
Managing Director: Dr. Arnab Chakrabarty
---
This e-mail and any attachment is for authorised use by the intended
recipient(s) only. It may contain proprietary material, confidential
information and/or be subject to company privilege. It should not be copied,
disclosed to, retained or used by, any other party. If you are not an
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March 26, 2018
Faculty jobs in brain stimulation at Stanford University
by Wei Wu
To whom it may concern,
I wanted to share a link to this job posting for those who are interested:
http://med.stanford.edu/content/dam/sm/psychiatry/documents/
about_us/FacultyJobs/BrainStimulation.pdf
March 26, 2018
11ᵗʰ Advanced Scientific Programming in Python in Camerino, Italy, 3—8 September, 2018
by Jakob Jordan
11ᵗʰ Advanced Scientific Programming in Python
==============================================
a Summer School by the G-Node and the University of Camerino
https://python.g-node.org
Scientists spend more and more time writing, maintaining, and debugging software. While techniques for doing this efficiently have evolved, only few scientists have been trained to use them. As a result, instead of doing their research, they spend far too much time writing deficient code and reinventing the wheel. In this course we will present a selection of advanced programming techniques and best practices which are standard in the industry, but especially tailored to the needs of a programming scientist. Lectures are devised to be interactive and to give the students enough time to acquire direct hands-on experience with the materials. Students will work in pairs throughout the school and will team up to practice the newly learned skills in a real programming project — an entertaining computer game.
We use the Python programming language for the entire course. Python works as a simple programming language for beginners, but more importantly, it also works great in scientific simulations and data analysis. We show how clean language design, ease of extensibility, and the great wealth of open source libraries for scientific computing and data visualization are driving Python to become a standard tool for the programming scientist.
This school is targeted at Master or PhD students and Post-docs from all areas of science. Competence in Python or in another language such as Java, C/C++, MATLAB, or Mathematica is absolutely required. Basic knowledge of Python and of a version control system such as git, subversion, mercurial, or bazaar is assumed. Participants without any prior experience with Python and/or git should work through the proposed introductory material before the course.
We are striving hard to get a pool of students which is international and gender-balanced: see how far we got in previous years <https://python.g-node.org/wiki/archives#stats>!
Date & Location
===============
3–8 September, 2018. Camerino, Italy.
Application
===========
You can apply online: https://python.g-node.org/wiki/applications
Application deadline: 23:59 UTC, 31 May, 2018. There will be no deadline extension, so be sure to apply on time.
Be sure to read the FAQ before applying: https://python.g-node.org/wiki/faq
Participation is for free, i.e. no fee is charged! Participants however should take care of travel, living, and accommodation expenses by themselves.
Program
=======
• Version control with git and how to contribute to open source projects with GitHub
• Best practices in data visualization
• Organizing, documenting, and distributing scientific code
• Testing scientific code
• Profiling scientific code
• Advanced NumPy
• Advanced scientific Python: decorators, context managers, generators, and elements of object oriented programming
• Writing parallel applications in Python
• Speeding up scientific code with Cython and numba
• Memory-bound computations and the memory hierarchy
• Programming in teams
Also see the detailed day-by-day schedule: https://python.g-node.org/wiki/schedule
Faculty
=======
• Ashwin Trikuta Srinath, Cyberinfrastructure Technology Integration, Clemson University, SC USA
• Jenni Rinker, Department of Wind Energy, Technical University of Denmark, Roskilde Denmark
• Juan Nunez-Iglesias, Melbourne Bioinformatics, University of Melbourne Australia
• Nicolas P. Rougier, Inria Bordeaux Sud-Ouest, Institute of Neurodegenerative Disease, University of Bordeaux France
• Pietro Berkes, NAGRA Kudelski, Lausanne Switzerland
• Rike-Benjamin Schuppner, Institute for Theoretical Biology, Humboldt-Universität zu Berlin Germany
• Tiziano Zito, freelance consultant, Berlin Germany
• Zbigniew Jędrzejewski-Szmek, Red Hat Inc., Warsaw Poland
Organizers
==========
For the German Neuroinformatics Node of the INCF (G-Node) Germany:
• Tiziano Zito, freelance consultant, Berlin Germany
• Caterina Buizza, Personal Robotics Lab, Imperial College London UK
• Zbigniew Jędrzejewski-Szmek, Red Hat Inc., Warsaw Poland
• Jakob Jordan, Department of Physiology, University of Bern, Switzerland Switzerland
For the University of Camerino Italy:
• Flavio Corradini, Computer Science Division, School of Science and Technology, University of Camerino Italy
• Barbara Re, Computer Science Division, School of Science and Technology, University of Camerino Italy
Website: https://python.g-node.org
Contact: python-info(a)g-node.org
--
Jakob Jordan
Institute of Neuroscience and Medicine (INM-6)
Computational and Systems Neuroscience &
Institute for Advanced Simulation (IAS-6)
Theoretical Neuroscience
Jülich Research Centre and JARA
Jülich, Germany
tel.: +49 2461 61-96450
http://www.csn.fz-juelich.de/
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
Prof. Dr. Sebastian M. Schmidt
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
March 25, 2018
PhD Position in Computational Neuroscience
by Obermayer, Klaus, Prof. Dr.
PhD Position in Computational Neuroscience & Machine Learning
Neural Information Processing Group, Fakultät IV, Technische Universität Berlin and Bernstein Center for Computational Neuroscience, Berlin, Germany
Salary grade E13 (TV-L Berliner Hochschulen)
Duration: max. 5 years
Starting date: October 1st, 2018
Working field:
The successful candidate is expected to join collaborative research projects at the interface of computational neuroscience and machine learning. The position is also affiliated with the Bernstein Center for Computational Neuroscience Berlin (https://www.bccn-berlin.de/) and the candidate is welcome to participate in its scientific and training activities. Teaching responsibilities include the supervision of two tutorials per week during the semester associated with the courses taught by the Neural Information Processing Group. For more information about our current research projects see: http://www.ni.tu-berlin.de/.
Requirements:
Successfully completed university degree (Master, Diplom or equivalent) in Computational Neuroscience, Computer Science or another MINT subject; very good knowledge of machine learning and Computational Neuroscience; experience in teaching (supervision of tutorials) is desirable; very good German and English skills.
How to apply:
Please send your written application with the reference number (IV-158/18) and the usual documents to Technische Universität Berlin - Der Präsident - Fakultät IV, Institut für Softwaretechnik und Theoretische Informatik, FG Neuronale Informationsverarbeitung, Prof. Dr. Obermayer, Sekr. MAR 5-6, Marchstr. 23, 10587 Berlin or - preferably - by e-mail to klaus.obermayer(a)tu-berlin.de.
Closing date: April 20th, 2018
To ensure equal opportunities between women and men, applications by women with the required qualifications are explicitly desired.
Qualified individuals with disabilities will be favored. The TU Berlin values the diversity of its members and is committed to the goals of equal opportunities.
Please send copies only. Original documents will not be returned.
March 25, 2018
Methods in Neuroscience at Dartmouth (MIND) 2018 Computational Summer School
by Matthijs van der Meer
Methods in Neuroscience at Dartmouth (MIND) 2018 Computational Summer School
https://summer-mind.github.io/
July 30th - August 7th, 2018
Application Deadline: April 29th, 2018
We are delighted to welcome applications for the second annual Methods
in Neuroscience at Dartmouth (MIND) Computational Summer School. The
theme of this year’s summer school is Narratives and Natural Contexts.
There has been renewed interest in extending the study of neural and
psychological phenomena in highly controlled laboratory settings to more
naturalistic paradigms that more closely reflect the rich spatiotemporal
structure of the real world. Bridging this divide requires developing
new experiments and analytic methods. The goal of our summer school is
to provide a forum for gaining hands-on experience with some of the
latest computational tools that can help gain insight into understanding
how our brains process naturalistic stimuli and contexts. We will offer
a mix of expertise at a broad range of spatiotemporal scales and domains
(e.g. behavioral, cognitive, social; circuit, whole-brain, and social
networks; etc.). In addition, we will maintain our special focus on
training students to use and contribute to open-source tools, data
sharing, and other “best practices” for open science.
For more information, and/or to apply, please visit our website,
https://summer-mind.github.io/. Please note that this year’s application
deadline is April 29, 2018. You may also find information about last
year’s summer school (theme: multiscale network dynamics) along with all
course materials here, https://summer-mind.github.io/2017.html. We
anticipate a diverse and talented mix of graduate students, postdoctoral
researchers, and junior faculty will participate in the summer school,
and we hope to see you this summer in Hanover!
Kind regards,
Luke Chang, Jeremy Manning, and Matt van der Meer
Directors
Jim Haxby, Thalia Wheatley, and Dan Rockmore
Advisory Committee
This event is sponsored by the Center for Social Brain Sciences, Center
for Cognitive Neuroscience, Dartmouth Research Computing, and Neukom
Institute for Computational Sciences at Dartmouth.
March 23, 2018
Job openings at Jülich Supercomputing Centre
by Jochen Martin Eppler
Dear all,
at the Jülich Supercomputing Centre at Forschungszentrum Jülich, Germany, we currently have two open positions in the context of the Human Brain Project:
* Scientific programmer in computational neuroscience<http://www.fz-juelich.de/SharedDocs/Stellenangebote/_common/dna/2018-061-EN…>
* Senior scientific developer in computational neuroscience<http://www.fz-juelich.de/SharedDocs/Stellenangebote/_common/dna/2018-062-EN…>
For details about the institute and the positions, please follow the links.
Best regards,
Jochen!
--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
Prof. Dr. Sebastian M. Schmidt
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
March 23, 2018
Brain Dynamics Toolbox for Matlab
by Stewart Heitmann
Dear all,
The Brain Dynamics Toolbox (http://www.bdtoolbox.org <http://www.bdtoolbox.org/>) is open-source software for simulating dynamical systems in neuroscience. It is for researchers and students who wish to explore mathematical models of brain function using Matlab. It includes a graphical tool for simulating dynamical systems in real-time as well as command-line tools for scripting large-scale simulations. Custom systems of differential equations can typically be defined in less than 100 lines of standard matlab code.
The graphical interface is designed to be used as both a research tool and a teaching tool. Its hub-and-spoke architecture allows new combinations of numerical solvers and interactive plots (time plots, phase plots, bifurcation diagrams, space-time plots, etc) to be applied to any model with no additional programming effort.
Version 2018a of the Brain Dynamics Toolbox has just been released and is available from http://www.bdtoolbox.org <http://www.bdtoolbox.org/>
The Handbook for the Brain Dynamics Toolbox is available from https://www.amazon.com/dp/198057250X <https://www.amazon.com/dp/198057250X>
The toolbox will be featured at the at the Australian Connectomics School (ACS-2018) in Melbourne, 30 May to 1 June 2018.
Best Regards
Stewart Heitmann & Michael Breakspear
QIMR Berghofer Medical Research Institute
Systems Neuroscience Group
March 23, 2018
Now hiring: The Krembil Centre for Neuroinformatics, CAMH - Toronto, Canada
by Sean Hill
The Krembil Centre for Neuroinformatics (www.krembilneuroinformatics.ca<http://www.krembilneuroinformatics.ca>) based at CAMH (www.camh.ca<http://www.camh.ca>), and fully affiliated with the University of Toronto, Canada, is hiring world-leading specialists to transform our understanding of mental health by organizing, integrating, analyzing, visualizing and modelling data across all levels of the brain —from genes to circuits to behaviour. This multimodal data is gathered across the clinical environment including genetic, epigenetic, MRI, DTI, fMRI, hd-EEG, actigraphy and electronic medical record data. Teams will employ state-of-the-art techniques including topological data analysis, machine learning and multiscale computational modeling to accelerate identification and treatment of mental health disorders. Research is performed in an open, team science environment, with an emphasis on reproducible data-driven research and a patient-centric approach. A focus on global collaboration is key to transforming our understanding of mental health and its treatment. The centre will operate as an incubator for medical technologies to identify, manage and treat mental illness, while shaping policy at national and global levels.
The centre is expanding with the following openings (see http://krembilneuroinformatics.ca/apply for full details and to apply):
*Independent Scientist for Computational Genomics
The Independent Scientist for Computational Genomics will build and lead a team of talented bioinformatics researchers, computational biologists, and computer scientists who employ and develop state-of-the-art genetic, epigenetic and transcriptomic analyses and predictive models to provide new insights into mental health and brain disorders in a data driven way, making outcome predictors and identifying optimal intervention opportunities.
*Independent Scientist for Brain Circuit Modelling
The Independent Scientist for Brain Circuit Modelling will build and lead a team responsible for the development, simulation and analysis of dynamic and perturbable computational models of biophysically detailed brain circuitry (for both preclinical and human brains), integrating genetic, epigenetic and transcriptomic data, and ion channel, cellular and synaptic biophysics. The team will work in close collaboration with other groups involved in detailed biophysical modeling, e.g. the Blue Brain Project and Allen Institute for Brain Science. The team will also be responsible for curating and maintaining data, literature and models to enable data-driven modeling of brain circuitry in health and disease, in addition to the concurrent construction of atlases, development of analysis approaches and identification of biomarkers to define mental health and brain disorders in a data driven way, such as aberrant dynamical processes.
*Independent Scientist for Whole Brain Modelling
The Independent Scientist for Whole Brain Modelling will build and lead a team responsible for the development of dynamic and perturbable causal models of the human brain, in health and in the context of mental illness, incorporating multi-modal neuroimaging and expression data including, but not limited to, structural, functional, diffusion and spectrometry MRI, PET/CT and EEG. The team will also be responsible for the concurrent construction of atlases, development of analysis approaches and identification of biomarkers to define mental health and brain disorders in a data driven manner.
*Independent Scientist for Whole Person Modelling
The Independent Scientist for Whole Person Modeling will build and lead a team responsible for the development and application of predictive modeling approaches for individual citizen, patient and population trajectories and outcomes. This includes tools, pipelines and approaches for the exploration, visualization and analysis of complex high-dimensional data, with the aim of the data-driven definition of mental health and brain disorders, and the establishment of outcome predictors and identification of optimal intervention opportunities.
*Independent Scientist for Brain and Health Knowledge Management
The Independent Scientist for Brain and Health Knowledge Management will build and lead a team responsible for organizing and disseminating data, models and literature related to the definition and treatment of mental health disorders to support both researchers and clinicians. This team will maintain and curate ontologies of brain disorders and link to data, analyses, visualizations, literature and models supporting their definition. This clinical support platform will support reasoning and inference across definitions and datasets to bridge psychiatric and neurological disorders.
*Knowledge Engineering Lead
The Krembil Centre for Neuroinformatics is launching a knowledge engineering initiative to structure and map vast quantities of clinical and research data into a unified schema and develop a knowledge graph. This initiative will lay the technical foundation to support supervised and unsupervised content discovery, enable data mining, and facilitate interactive modes of engagement with our data corpus. A new Knowledge Engineering team is being established to spearhead the implementation of this initiative. This is a unique opportunity to partner with world-class researchers in the creation of unprecedented knowledge discovery tools.
*Brain Imaging Data Engineer
The Brain Imaging Data Engineer role will be accountable for managing and enhancing the solution for collecting, storing, curating and integrating brain imaging data sets across the organization, including, but not limited to the following modalities: MRI, PET and EEG. You will work closely with the senior architects on the technology team as well as collaborating with scientific leads. You will be accountable to evolve the technology solution to keep up with industry changes to ensure the solution remains optimal.
*Molecular Data Engineer
The Molecular Data Engineer role will be accountable for managing and enhancing the solution for collecting, storing, curating and integrating molecular data sets across the organization. You will work closely with the senior architects on the technology team as well as collaborating with scientific leads. You will be accountable to evolve the technology solution to keep up with industry changes to ensure the solution remains optimal.
*Senior Project Manager – BrainHealth Databank
The Senior Project Manager will work with multiple stakeholders both internal and external to CAMH and be responsible for the hands-on leadership and oversight for the development and execution of work plans, accountabilities, and timelines associated with the BrainHealth Databank initiative. The BrainHealth Databank platform will be specifically designed to support multidimensional phenotyping studies that combine digital phenotyping and laboratory-based data across existing and future clinical studies at CAMH. All data will be organized within the knowledge graph of the BrainHealth Databank. The platform will support configuration of studies that integrate common data elements and CRFs, wearable and mobile devices, voice samples, electronic medical record (EMR) extracts, outcome assessments and health care system usage.
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March 22, 2018