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v5.7 of NeuroMorpho.Org released on 30 May, 2014

by NeuroMorpho Administrator

Version 5.7 of NeuroMorpho.Org was released on 30 May, 2014. The release included 29 new data sets (1341 reconstructions), including from three new animal species (dragonfly, moth, and sheep). The database now contains 11,335 reconstructions from 144 contributing labs. More than 3.2 million reconstructions were downloaded in over 130,000 unique visits from 146 countries. Please visit the What's new<http://neuromorpho.org/neuroMorpho/WIN.jsp> page for details on data included in this release, including new species strains, brain regions, cell types, and experimental conditions. The Acknowledgements <http://neuromorpho.org/neuroMorpho/acknowl.jsp> include details on contributing labs, and the About<http://neuromorpho.org/neuroMorpho/about.jsp> page provides an updated overview of the repository content. A new user-friendly functionality, OntoSearch<http://neuromorpho.org/neuroMorpho/OntoSearch.jsp>, was introduced in this release, enabling more powerful searches of species and strains with automated synonym translation, taxonomical relations, and keyword auto-completion. The literature coverage database was also updated to include publications through March 2014. We are continuously grateful to all the data owners who freely share their data with the community. We always appreciate any and all feedback and comments. Sincerely, The NeuroMorpho.Org team -- Ruchi Parekh, Ph.D. NeuroMorpho.Org Project Lead Postdoctoral Research Fellow Center for Neural Informatics, Structures, and Plasticity Krasnow Institute for Advanced Study MS2A1, George Mason University Fairfax, VA 22030 (USA) Ph - +1-703-993-4382<tel:%2B1-703-993-4382> www.neuromorpho.org<http://www.neuromorpho.org/> nmadmin(a)gmu.edu<mailto:nmadmin@gmu.edu>?

June 5, 2014

POSTDOC in SPINAL CORD INJURY IMAGING AND MODELING

by Andre Longtin

We seek a postdoctoral candidate to work on MRI image analysis and modeling of spinal cord injury. The candidate would be put forth for the Rick Hansen Fellowship described below. The successful translation of spinal cord repair therapies from animal models to the clinic requires an improved understanding of the injured motor and sensory tracts in humans. While histological tract tracing in animals can delineate the specific injured tracts and allow for therapy evaluation, these tracing methods cannot be applied to patients. Conventional magnetic resonance imaging (MRI) techniques allow spinal cord injury to be imaged; however they do not permit clinicians to reliably determine motor or sensory function. This limitation is due to the fact that conventional MRI imaging results are known to have poor correlation patient motor or sensory tract injury. Our objective is to develop an MRI technique that utilizes techniques such as diffusion tensor imaging (DTI), tractography and functional MRI imaging techniques as a biomarker. This will permit more detailed imaging of the spinal cord and allow improved correlation with neurological function. These improved imaging techniques can then be developed to improve correlation with patient clinical function which can then be used to improve the development and selection of successful therapeutic repair strategies in humans with spinal cord injury. The research consists in developing MRI imaging techniques such as DTI, tractography and functional MRI measures as a stand alone or complementary biomarker that correlates with specific motor or sensory tract function in humans. A large DTI dataset has been compiled from a variety of human spinal cord lesions. The candidate will quantify the level of damage and relate it through modeling and statistical analysis to the observed clinical scores. The DTI and tractography analyses will then be optimized to produce a strong biomarker. The candidate must hold a PhD degree in a relevant field, and will be co-supervised by a team of three investigators: Eve Tsai, a spinal cord neurosurgeon at the Ottawa Hospital Research Institute and University of Ottawa Faculty of Medicine; Andre Longtin, Physics and Medicine, University of Ottawa, a specialist in neural modeling, and Ian Cameron, a senior MRI medical physicist at the OHRI and University of Ottawa. Ideally the candidate would be able to start as soon as possible after receipt of a positive answer (typically within a month or two of being nominated), and no later than December 1st 2014. Applications consisting of a CV should be submitted to alongtin(a)uottawa.ca<mailto:alongtin@uottawa.ca> before June 25 2014 in time for submission of the file of the selected candidate to the Rick Hansen Institute. RICK HANSEN INSTITUTE POSTDOCTORAL FELLOWSHIP INTRODUCTION The Rick Hansen Institute is a Canadian-based not-for-profit organization committed to accelerating the translation of discoveries and best practices into improved treatments for people with spinal cord injuries. Their mission is to lead collaboration across the global SCI community by providing resources, infrastructure and knowledge, and to identify, develop, validate and accelerate the translation of evidence and best practices to reduce the incidence and severity of paralysis after SCI, improve health care outcomes, reduce long-term costs, and improve the quality of life for those living with SCI. PURPOSE OF FUND Award a fellowship to a postdoctoral fellow at the Faculty of Medicine whose research is primarily focused on knowledge transfer and/or implementation sciences related to spinal cord injury (SCI). The recipient would have an opportunity to participate in the various knowledge transfer-related projects currently funded by the Rick Hansen Institute and its SCI partners. FELLOWSHIP DETAILS Eligibility Criteria The applicant must: 1. be a Canadian citizen, a permanent resident, a person with the protected/refugee status, or an international student ; 2. intend to register as a postdoctoral fellow in the Faculty of Medicine of the University of Ottawa 3. be within 4 years of completing a PhD in knowledge transfer, implementation science, spinal cord injury or a related field; and 4. propose a program of research that is primarily focused on knowledge transfer and/or implementation sciences related to spinal cord injury (SCI). Note: The awarding of the fellowship is conditional to the recipient’s registration as a postdoctoral fellow at the Faculty of Medicine, through the Faculty of Graduate and Postdoctoral Studies (as per the FGPS policy on postdoctoral appointments - http://www.grad.uottawa.ca/Default.aspx?tabid=1412) Value of the fellowship: $75,000 CAN per year Number of fellowships: 1 Frequency of awarding: For one year, with possibility of renewal for a second year Level or program of study: Postdoctoral Application contact: Graduate Studies Office, Faculty of Medicine Application deadline: June 30, 2014

June 5, 2014

Call For Participation to our upcoming Research Topic: Real-world unisensory and multisensory processing

by Jason Sherwin

Dear Colleagues, It is with great pleasure that I invite you to contribute to a Special Issue for Frontiers. The topic description can be found on its homepage via the link below. We look forward to your boundary-pushing contributions in this exciting area of psychology, neuroscience and other related disciplines. In collaboration with Frontiers in Psychology, section Perception Science, we are organizing a Research Topic titled "Real-world unisensory and multisensory processing: Perceptual and neural mechanisms in complex natural scene processing”, hosted by Jason Sherwin, Jeremy Gaston, Kelvin Oie. As host editor, I would like to encourage you to contribute to this topic. Frontiers, a Swiss open-access publisher, recently partnered with Nature Publishing Group to expand its researcher-driven Open Science platform. Frontiers articles are rigorously peer-reviewed, can be disseminated freely and are widely read by your colleagues and by the broader scientific and medical research communities. The idea behind a research topic is to create an organized, comprehensive collection of several contributions, as well as a forum for discussion and debate. Contributions can be articles describing original research, methods, hypothesis & theory, opinions, etc. We have created a homepage on the Frontiers website (Frontiers in Psychology, section Perception Science) where all articles will appear after peer-review and where participants in the topic will be able to hold relevant discussions: http://www.frontiersin.org/Perception_Science/researchtopics/Real-world_uni…. Frontiers will also compile an e-book, as soon as all contributing articles are published, that can be used in classes, be sent to foundations that fund your research, to journalists and press agencies, or to any number of other organizations. Among others, we have contacted the following authors: Bruno Lucio Giordano David C Jangraw : author Edward A Vessel : author Daniel P Ferris : author Bill Geisler Peter Gerhardstein Giulio Tononi : author Uri Hasson : author Jacek Dmochowski : author Joel Snyder Jordan Muraskin : author Tzyy-Ping Jung : author Klaus Gramman : author Linbi Hong : author Andreas Lozano : author As such, a manuscript accepted for publication incurs a publishing fee, which varies depending on the article type. Research Topic manuscripts receive a significant discount on publishing fees. Please take a look at this fee table: http://www.frontiersin.org/about/PublishingFees. Once published, your articles will remain free to access for all readers, and will be indexed in PubMed and other academic archives. As an author in Frontiers, you retain the copyright to your own papers and figures. I would be delighted if you considered participating in this Research Topic. Should you choose to participate, please confirm by sending me a quick email and then your abstract no later than Jun 27, 2014 using the following link: http://www.frontiersin.org/submissioninfo Please note that the deadline for manuscript submission is on: Dec 19, 2014 Since I am using the Frontiers system to manage this topic, I would really appreciate if you could also please indicate your decision by clicking on one of the links below. AGREE to Participate http://www.frontiersin.org/AcceptContributor.aspx?activationkey=8c7388de-dd… DECLINE to Participate http://www.frontiersin.org/DeclineContributor.aspx?activationkey=8c7388de-d… With best regards, Jason Sherwin Guest Associate Editor, Frontiers in Perception Science www.frontiersin.org Jason Sherwin, Ph.D. Columbia University Department of Biomedical Engineering Laboratory for Intelligent Imaging and Neural Computing 530 West 120th Street, Mail Code: 8904 New York, NY 10027 Phone: +1 - 212 - 854 - 8997 Email: jason.sherwin(a)columbia.edu Managing Editor, IEEE Transactions on Neural Systems and Rehabilitation Engineering Email: managertnsre(a)gmail.com http://tnsre.bme.columbia.edu

June 5, 2014

BCF/NWG course "Analysis and Models in Neurophysiology" 2014 at the Bernstein Center Freiburg, Germany

by Birgit Ahrens

BCF/NWG-Course "Analysis and Models in Neurophysiology" /Sunday, October 5 - Friday, October 10, 2014 / /Bernstein Center Freiburg, Hansastraße 9a, 79104 Freiburg, Germany/ *Aim of the course:* The course is intended to provide advanced Diploma/Masters and PhD students, as well as young researchers from the neurosciences with approaches for the analysis of electrophysiological data and the theoretical concepts behind them. *The course includes various topics such as*: * Neuron Models and Point Processes (Prof. Stefan Rotter) * Local field potentials (Prof. Ulrich Egert) * Neural Coding (Dr. Robert Schmidt) * Neural Decoding (Prof. Carsten Mehring) The course will consist of lectures in the morning and and matching exercises using Matlab, Mathematica and Python in the afternoon. Experience with these software packages will be helpful but is not required for registration. The participants should have a basic understanding of scientific programming. This course is designated especially for advanced diploma/master-students and PhD-students (preferentially in their first year). *Application:* Please apply by sending one pdf document containing your CV and a meaningful letter of motivation to nwg-course(a)bcf.uni-freiburg.de. The letter of motivation should refer to the following points: * Reasons for wanting to take this course * Background in mathematics * Experience in using Matlab/Python/Mathematica * Background in neuroscience The course is limited to 20 participants. *Course fees:* NWG members - 50EUR, others - 125EUR *Application deadline: *June 30, 2014 *More information: *http://www.bcf.uni-freiburg.de/events/conferences-workshops/20141005-nwgcourse *-- Dr. Birgit Ahrens --* Teaching & Training Coordinator Bernstein Center Freiburg University of Freiburg Hansastr. 9a D - 79104 Freiburg Germany Phone: +49 (0) 761 203-9575 Fax: +49 (0) 761 203-9559

June 5, 2014

Virtual Physiology for Teaching: SimNerv, SimNeuron etc.

by Hans Albert Braun

Dear Colleagues, we would like to draw your attention to the recently reprogrammed "*Virtual Physiology*" teaching tools, including two neurophysiology labs: SimNerv and SimNeuron. More information is given on our website www.virtual-physiology.com from where you also can download fully functioning demo versions for Windows. * **SimNerv* offers a realistic lab environment on the computer screen to perform classical experiments of compound action potential recordings from the frog sciatic nerve. All parameters of the stimulating and recording devices are freely adjustable. Mathemathical algorithms guarantee for appropriate reactions of the nerves, also considering their physological diversity. *SimNeuron* offers easy to overlook laboratories for voltage- and current clamp experiments on the basis of simplified Hodgkin-Huxley type equations, described, for example, in Tchaptchet et al., Brain Res, 1536: 159-167. A neuron editor allows altering the neuron's parameters to examine their impact on the neurons' dynamics. In addition to these neurophysiology labs you also can download fully functioning demo versions of *SimMuscle* and *SimHeart*, featuring classical experiments with nerve-muscle preparations of the frog and with the isolated heart of the rat in the widely used Langendorff set-up for drug perfusion. To ask for more information, reprints (see short list below), or prices for fully licensed versions for teaching, please, send a reply. We hope you and your students will enjoy working in the virtual physiology laboratories. Best regards Hans Braun and the Virtual Physiology team */ References: /*/see also //*http://www.uni-marburg.de/fb20/physiologie/ags/braun/publications*/* */or //*https://www.res**earchgate.net/profile/Hans_Braun/contributions?ev=prf_act*/ */SimNeuron related references:/* Tchaptchet A, Postnova S, Finke C, Schneider H, Huber MT, Braun HA (2013): Modelin Neuronal Activity in Relation to Experimental Voltage-/Patch-Clamp Recordings. Brain Res 1536: 159-167, http://dx.doi.org/10.1016/j.brainres.2013.06.029 /PubMed: //http://www.ncbi.nlm.nih.gov/pubmed/23911648 Science direct: //http://www.sciencedirect.com/science/article/pii/S0006899313009153/ -/or send a mail to braun(a)uni-marburg.de / Postnova S, Finke C, Huber MT, Voigt K, Braun HA (2011): Conductance-Based Models of Neurons and Synapses for the Evaluation of Brain Functions, Disorders and Drug Effects. In: Biosimulation in Biomedical Research, Health Care and Drug Development. Eds.: Erik Mosekilde, Olga Sosnovtseva, Amin Rostami-Hodjegan. Springer, Wien - New York, pp 93 -- 126. /Can be downloaded from our website www.virtual-physiology .com/ //*/General reports on the first Virtual Physiology release:/* Braun HA (2003) Virtual versus real laboratories in life-science education: Concepts and experiences. In: Jukes N and Chiuia M (Eds) From guinea pig to computer mouse. Interniche, pp 81-87. /Can be downloaded from our website www.virtual-physiology .com/ Bahar S (2000) The Real and Virtual Laboratory: A Conversation with Dr. Hans Braun. In: The Biological Physicist, The Newsletter of the Division of Biological Physics of the American Physical Society. Vol.1 No.1 June 2001 p 5-7. /Can be downloaded from our website www.virtual-physiology .com/ */A recent Poster for the 2014 Conference of the German Physiological Society:/* //Braun HA, Tchaptchet A, dell Oro-Friedl J, Immer D, Schneider H, Braun T, Postnova S, Semyachkina-Glushkovskaya O, Schwabedal J, Wenzel S, Voigt K, Hirsch M: Learning by Doing with the Virtual Physiology Series:Physiological and Pharmacological in silico Experiments. /Can be downloaded from our website www.virtual-physiology .com/ -- Hans A. Braun Neurodymics Lab, Institute of Physiology, Philipps University of Marburg Deutschhaustr. 2, D-35037 Marburg, Germany Phone: +49 6421 286-2305, Mobile: +49 173 319 3028, email: braun(a)staff.uni-marburg.de URL: www.uni-marburg.de/fb20/physiologie/ags/braun see also: www.virtual-physiology.com/

June 4, 2014

New code repository for Comp Neuro undergrad course materials

by Rob Clewley

Hi, I have taught two introductory comp neuro classes based mostly on Hugh Wilson's great book, with some additional material from Izhikevich's recent book. The course is intended to be a very practical introduction to the basics of DEs and dynamical systems for modeling neural systems. It focuses on electrophysiology of single neurons and small networks, and is split between lecture and lab format. I have updated a lot of the codes from Wilson's book and put them into PyDSTool, or at least in Python. I never got the chance to rigorously organize these codes, but have decided to post them on github as they are because I've already been contacted by some instructors who wanted to to use PyDSTool for their comp neuro class. There are some homework and project ideas up there too. Feel free to fork and contribute on github for others to benefit from any further input. https://github.com/robclewley/compneuro http://www.ni.gsu.edu/~rclewley/Teaching/CompNeuro/NEUR4030.html Best, Rob -- Robert Clewley, Ph.D. Assistant Professor Neuroscience Institute and Department of Mathematics and Statistics Georgia State University PO Box 5030 Atlanta, GA 30302, USA tel: 404-413-6420 fax: 404-413-5446 http://neuroscience.gsu.edu/rclewley.html

June 3, 2014

Applicant Call for Goettingen's Computational Neuroscience Summer Course

by Maximilian Puelma Touzel

Applications are invited for the 12th summer course on COMPUTATIONAL NEUROSCIENCE in Göttingen, Germany September 08th - 12th, 2014 Organized by Agostina Palmigiano, Joscha Liedtke and Maximilian Puelma-Touzel The course is intended to provide graduate students and young researchers from within and outside of neuroscience with working knowledge of theoretical and computational methods used in the field and to acquaint them with recent developments therein. The focus of this year's course is modelling and theory of neuronal ensembles. The course includes tutorials and lectures from the following researchers: * Carl Van Vreesijk, Universite Rene Descartes, Paris, France * Claudia Clopath, Imperial College London, London, England * Srdjan Ostojic, École Normale Supérieure, Paris, France * Gasper Tkacik, Institute of Science and Technology, Vienna, Austria * Alfonso Renart, Champalimaud Centre for the Unknown, Lisbon, Portugal The course takes place at the Department of Nonlinear Dynamics of the Max-Planck Institute for Dynamics and Self-Organization, Göttingen. A course fee of 100 Euro includes participation in the tutorials, study materials, and part of the social events. The number of participants is limited to 30. Course language is English. To apply please fill out the application form at: http://www.bccn-goettingen.de/events/cns-course by *August 5, 2014* Best wishes and looking forward to seeing you in Göttingen, Max Puelma Touzel (on behalf of the organizers) Max Planck Institute for Dynamics and Self-Organization Fassberg 17, 37077 Goettingen, Germany +49 551 5176 444 Office +49 (0)176 6 876 2821 Mobile mptouzel(a)nld.ds.mpg.de www.nld.ds.mpg.de Maximilian Puelma Touzel Max Planck Institute for Dynamics and Self-Organization Fassberg 17, 37077 Goettingen, Germany +49 551 5176 444 Office +49 (0)176 6 876 2821 Mobile <mailto:mptouzel@nld.ds.mpg.de> mptouzel(a)nld.ds.mpg.de <http://www.nld.ds.mpg.de/> www.nld.ds.mpg.de

June 3, 2014

PhD position in computational modelling

by Jane Neumann

The Max Planck Institute for Human Cognitive and Brain Sciences Leipzig and the Collaborative Research Center (CRC) 1052 "Obesity mechanisms" at the Leipzig University Hospital are offering a PhD studentship in computational modelling. Within the project, computational modelling is used to investigate leaning and decision-making in humans. The project is aimed at the multi-modal integration of available and newly acquired behavioral, structural/functional magnetic resonance imaging (MRI), PET and genetic data towards comprehensive computational and neurocognitive models of cognitive control over behavior. Work will be carried out at the Max Planck Institute for Human Cognitive and Brain Sciences Leipzig under the supervision of Dr Jane Neumann and Dr Annette Horstmann. Both Leipzig's long tradition in conducting neuroscientific research and the ultra-modern equipment at the Max Planck Institute provide an environment that offers new perspectives in neuroimaging research. Further, the position will be part of the CRCs Integrated Research Training Group. This graduate program offers interdisciplinary qualification in various research methods and transferable skills, and provides support in career planning and in establishing an own scientific network. Applicants should hold a Master's degree (or equivalent) in one of the following disciplines: computational or cognitive neuroscience, computer science, maths, psychology, biology, cognitive science or related. Prior experience in the fields of computational neuroscience and/or neuroimaging are of great advantage. Sound knowledge of statistics and excellent programming skills are essential. A good command of written and spoken English is requested of all applicants. Please send your application as a single pdf-file to neumann(a)cbs.mpg.de referring to 'Modelling SFB 1052'. Complete applications include cover letter, CV, letter(s) of recommendation, and copies of university degrees and additional certificates. Informal enquiries should be made to Dr Jane Neumann (+49 (0) 341 99 40 26 21). For meeting Dr. Neumann and Dr. Horstmann at *OHBM 2014*, please send an email to neumann(a)cbs.mpg.de or horstmann(a)cbs.mpg.de including days and times when you are available during the conference. The salary is based on the German E 13 TV-L salary scale. In order to increase the proportion of female staff members, applications from female scientists are particularly encouraged. Disabled applicants are preferred if qualification is equal. Deadline for application: until position is filled Further details about the project can also be found at www.o-brain-project.de

June 3, 2014

[meetings] Living Machines III: Call for Participation in Conference, Demos and Workshops

by Nathan F Lepora

_____________________________________________________________ Call for Participation in Conference, Demos and Workshops Living Machines: The 3rd International Conference on Biomimetic Robotics and Biohybrid Systems. A Convergent Science Network Event 29th July to 1st August 2014 Museo Nazionale della Scienza e della Tecnologia, Leonardo Da Vinci Milano http://csnetwork.eu/livingmachines/conf2014 ______________________________________________________________ News & Highlights * Deadline for early registration, June 30th, 2014. * Book on time accommodation for good value and availability. see LM2014 for suggestions http://csnetwork.eu/livingmachines/conf2014/accommodation * Main conference programme now online, 6 plenary talks, 1 invited talk, 18 single-track oral presentations, 10 poster spotlights, 40 posters. * 4 satellite workshops also available for registration as separate events, topics include autonomous locomotion systems, the robot self, emergent social behavior, and biomimetics in design. * Bring a demo, be it a robot or an installation, for an exhibition on biomimetic robots, biohybrid computer art, live robot performance or videos. * If you wish to bring a demo please contact us. info.csnetwork(a)upf.edu * If you need help with transporting your demo to Milano contact us at info.csnetwork(a)upf.edu * You can book the social dinner as a separate event. Contact info.csnetwork(a)upf.edu for all enquiries. ABOUT LIVING MACHINES 2014 The 3rd International Conference on Biomimetic and Biohybrid systems comprises 4 days of events including 3 days of single-track oral presentations with 6 plenary speakers; a 1-day with five satellite workshops on themes ranging from autonomous robots to robot “selves” to biomimetics in design and social impacts of living machines. On Wednesday there will be a reception offered by the Tailor & Francis group http://www.taylorandfrancis.com/ and, on Thursday there will be the LM2014 banquet. We hope you will join us for this exciting programme! The conference registration site is open. Please register soon to take advantage of early registration—deadline June 30th ***From every accepted paper at least 1 author must be registered and present at the Conference*** CONFERENCE PROGRAMME **Program now available online** http://csnetwork.eu/livingmachines/conf2014/programme The main conference will take the form of a single-track oral presentation programme, 30th July to midday 1st August 2014 that will include 6 plenary lectures from leading international researchers in biomimetic and biohybrid systems. Agreed speakers are: Mandyam Srinivasan Queensland Brain Institute, Australia Insect-inspired cognition and vision Andrew Schwartz University of Minnesota, Pittsburgh, USA Neural control of prosthetics Sarah Bergbreiter University of Maryland, USA Microrobotics Darwin Caldwell Italian Institute of Technology, Genova, Italy Legged Locomotion Ricard Sole Universitat Pompeu Fabra, Barcelona, Spain Evolution of complex networks Minoru Asada Osaka University, Japan Cognitive and Affective Developmental Robotics There will also be 18 regular talks of 30 min, 1 invited talk on Thursday at midday on Biomimetics in Design by Franco Lodato, 10 Poster Spotlights of 5 min and 2 poster sessions of 90 mins each (midday of July 30st and August 1st) featuring 40 posters. Particular themes include: Soft Robotics Neuromechanics Social Robotics Locomotion Biohybrid Brain-based Active Sensing WORKSHOPS In addition to the main conference there is one further day of workshops, each with their own full program that will be available soon on the Living Machines website. Monday 29th July Embodied Interaction and Internal Models: Key Features of Autonomous Locomotion Systems - Organisers: Volker Dürr, Biological Cybernetics, Bielefeld University, Germany, Paolo Arena, Electrical Engineering, University of Catania, Italy The Robot Self - Organizers: Tony Prescott, University of Sheffield, UK; Paul Verschure Universitat Pompeu Fabra Barcelona, CSNII Emergent social behaviours in bio-hybrid systems - Organizers: José Halloy: Universite Paris Diderot. Thomas Schmickl: Karl-Franzens-University Graz, Stuart Wilson, University of Sheffield Rotational Geometry and the Creation of Bionic Models. - Organizers: Pino Trogu, San Francisco State University, USA, Franco Lodato, Creative Director VSN Mobil with Istituto Europeo di Design, Milano Neuro-chip interfaces and Neuroprostheses - Organizers: Stefano Vassanelli, University of Padova, Italy Attendance at workshops will attract a small fee intended to cover the costs of the meeting. We have reserved meeting rooms at the Italian Institute of Technology in Milan each with capacity for up to 40 people. Please book early. Separate registration for satellite events is possible. ABOUT THE VENUE The organisers are delighted to have secured the Museo Nazionale della Scienza e della Tecnologia, Leonardo Da Vinci Milano as the main venue for our conference. The museum is a centre dedicated to Leonardo da Vinci a symbol of the connection between artistic and scientific-technological cultures, two complementary expressions of human creativity. KEY DATES June 30th 2014 Deadline for early registration July 30th - August 1st 2014 Conference We are looking forwards to seeing you in Milano. ORGANISING COMMITTEE Tony Prescott (co-chair) Paul Verschure (co-chair) Armin Duff (programme chair) Roberto Cingolani (local organizer) Barbara Mazzolai (workshops) Nathan Lepora (communications) Anna Mura (communications and web-site) Contact and Conference Secretariat: Info.csnetwork(a)upf.edu living-machines(a)sheffield.ac.uk

June 3, 2014

[PhD] Natural scene statistics and visual motion processing in humans and non-human primates

by Laurent Perrinet

Dear List, Applications are invited for 3 PhD positions funded by the PhD program in Integrative and Clinical Neurosciences (http://www.int.univ-amu.fr/PhD-Program-in-Integrative-and) as described in: http://www.int.univ-amu.fr/IMG/pdf/List_of_research_projects.pdf among which the following ---at the Institute of Neurosciences, Timone in Marseille, France--- may be of interest to the list. Deadline for applications is June 15th. Cheers, Laurent -- Laurent Perrinet - INT (UMR 7289)/CNRS http://invibe.net/LaurentPerrinet Title: Natural scene statistics and visual motion processing in humans and non-human primates Supervisor: Guillaume MASSON Laboratory: Institute of Neurosciences, Timone (INT) State of the art: The mammalian visual system is tuned to process the complex, high-dimension statistics of natural scenes. For instance, neuronal responses to natural inputs are more ﬁnely tuned, more temporally precise and more sparse. A major challenge is to understand how such complex information is integrated to measure perceptual quantities such as object motion in a crowded environment. From a theoretical perspective, this implies to understand how the cascade of cortical processing steps extracts the relevant dimensions through linear (e.g. ﬁltering) and nonlinear (e.g. gain control, contextual modulation) mechanisms. From an experimental perspective, the challenge implies to design behavioural tasks that can dissect out these mechanisms. The classical approach is to compare classic, low-dimension stimuli such as gratings or dots with natural images. However, it is almost impossible to parametrize natural scenes in a useful way. We [1], and others [2], have designed and begun to use naturalistic stimuli as static or dynamic textures of which mean and variance along each parameter space is manipulated to demonstrate how sensory systems sense and represent information. We have recently shown in Nature Neuroscience3 that richer textures drive more accurate and reliable ocular tracking responses. This is the ﬁrst demonstration that naturalistic inputs processing can be probed using sensorimotor tasks. Objectives: Our objective is to demonstrate that in human and non-human primates, estimating direction and speed of a moving object requires to integrate information from the multiple spatial and temporal scales existing in natural scenes. We will investigate how different spatiotemporal frequency channels are nonlinearly combined to drive faster and more precise tracking eye movements. In particular, we will extend our previous study [3] by studying how richness of visual motion information reduces the variability of motor responses, within and across trials. We will also study how the geometric organization of the texture input impacts performance, opening the door to understanding the link between low-level motion processing and the perceptual organization of complex scenes. Methods: The approach is based on probing low-level visual processing through the dynamics of reﬂexive eye movements. Ocular following responses exist in both humans and non-human primates and over the last 15 years we, and others have shown how they can probe low-level motion mechanisms. The PhD will work in non-human primates to conduct behavioural experiments using random phase textures and recording eye movements with the scleral search coil technique. Behavioural performance will be assessed through kinematics (acceleration, latency…) as well as through detection and discrimination tasks (i.e. comparison between responses for two stimuli). Expected results: A ﬁrst step will be to reproduce the main observation made in humans: richness of the inputs improves precision and decreases variability. Then we will characterize the nonlinear interactions between spatiotemporal channels underlying speed estimation through motion energy and their temporal dynamics. Feasibility: This project is supported by an ANR project (SPEED) that started in October 2013. The PhD student will work in close collaboration with a PD fellow working in humans as we expect the ﬁrst series of experiments to be identical in both species. A non-human primate set-up is available and a research assistant (F Barthelemy) will daily supervise the lab work. The InViBe team has strong expertises in modelling and electrophysiology so that the project will open the door for collaborative work in texture synthesis and speed processing modelling with Laurent Perrinet and recording of population activity evoked with dense, naturalistic textures with Fred Chavane. 1 Sanz-Léon et al. (2012) J Neurophysiol http://invibe.net/LaurentPerrinet/Publications/Sanz12 2 Freeman et al. (2013) Nature Neuroscience 3 Simoncini et al. (2012) Nature Neuroscience http://invibe.net/LaurentPerrinet/Publications/Simoncini12 Listed as Research project #18 in: http://www.int.univ-amu.fr/IMG/pdf/List_of_research_projects.pdf More Guidelines: In 2014, the PhD program in Integrative and Clinical Neurosciences will fund three PhD scholarships to excellent Master graduates from non-French top ranked universities The selection process includes the following steps : Nineteen research projects of excellence from AMU laboratories have been selected by the board of the PhD program. Applicants have to select and rank two research projects and motivate their choice The selection committee will shortlist 10 students that will be individually interviewed in June The final decision will be known in July and the three successful candidates will start their PhD in October. Guidelines for students The scholarships are open to high performing Master graduates from top ranked non-French universities. Applicants must provide the following documents : A first e-mail should be sent by you to edsvs-neuroscience-phd-program(a)univ-amu.fr with the subject "PhD Application, YourName" [1] and three documents in the appropriate format : a Curriculum Vitae. This document should be named "YourName_CV.doc" a document highlighting the adequacy between the applicant’s background and the selected research projects (to be download here). Please use the following template to be download here. This document should be named "YourName_ResearchProjects.doc" . a one page letter of motivation (500 words). This document should be named "YourName_motivation_letter.doc" . two letters of recommendation will have to be sent directly to edsvs-neuroscience-phd-program(a)univ-amu.fr with the subject "Recommendation, YourName" , using the following template to be download here. This document should be named "YourName_Evaluation.doc". Closing date for applications : Sunday, June 15th, at midnight (French time). Scholarship value : Net monthly salary : 1,368 €. Expenses : applicants will pay their annual tuition fee (around 500 €) and, when needed, their visa fee. Tenure of award : 3 years General rules Any incomplete application will not be considered How and when do students learn about the decision ? Offers of PhD scholarships will be made soon after the final individual interview, early July. Because some applicants may decline a scholarship, it is possible that some applicants receive their notification of selection a week after the final decision What conditions are attached to acceptance of this award ? Scholarship recipients must sign a Postgraduate Scholarships Contract agreeing to abide by the attached regulations. Recipients will be required to devote themselves full-time to their program of research during the tenure of the scholarship Selection committee : members of the PhD program board and members of the AMU neuroscience community. None of them will be the supervisor of a proposed research project

June 3, 2014