- Comp-neuro - lists.cnsorg.org

NeuroBridges 2024 : apply now

by Ahmed El Hady

*NeuroBridges 2024* *A Mediterranean, Middle Eastern Summer School in Neuroscience* *Deadline to apply: April 1st, 2024* *NeuroBridges 2024* is a summer school which will take place between *September 15 and September 26, 2024* in Le Centre de Conferences Internationales de Cluny, France (CCIC) <https://streaklinks.com/B3KCp_jAQOMpwC7dQwRSV3xc/https%3A%2F%2Fcollegecluny…>. The school will provide an overview of theoretical and experimental frameworks used to study a variety of *decision making* processes. It will cover different model systems from rodents to humans and a plethora of decision making mechanisms. Another objective of Neurobridges is to bring together *Mediterranean and Middle Eastern scientists*, in order to promote scientific cooperation between young researchers from these countries. The organizers of NeuroBridges are convinced that such scientific collaborations can lead to personal relations, which eventually may alleviate the political distress in the Middle East. The school is intended for graduate students and postdocs, primarily, but not only, from the Middle East and the Mediterranean region, either working in their home countries or abroad. Applicants should have some background in related fields in neuroscience or cognitive psychology. *All costs of registration and accommodation will be covered by the organizers. A limited number of travel grants will be also be available*. *NeuroBridges 2024 Faculty:* * Alaa Ahmed (U. Colorado) * Ahmed El Hady ( Uni Konstanz / Max Planck Institute) * Rava Azeredo da Silveira (IOB and CNRS) * Sylvie Granon (Université Paris-Saclay) * David Hansel (CNRS) * Carole Levenes (CNRS) * Yonatan Loewenstein (Hebrew U.) * Eran Lottem (Hebrew U.) * Drazen Prelec (MIT) * Reza Shadmehr (John Hopkins U.) * Haim Sompolinsky (Hebrew U. and Harvard) * *NeuroBridges*is co-organized by Ahmed El Hady (Uni Konstanz / Max Planck Institute), David Hansel (CNRS, Paris), Yonatan Loewenstein (Hebrew University of Jerusalem, Israel) and Carole Levenes (CNRS, Paris). ** *NeuroBridges 2024* is supported by the Simons Foundation, the ANR and ELSC, and is in partnership with VVTNS (https://www.wwtns.online/ <https://www.wwtns.online/>). For more information and application, visit our website: https://neurobridges.net/ *Contact us:*neurobridges2024@gmail.com <mailto:neurobridges2023@gmail.com>

March 2, 2024

May 1st EXTENDED CFP DEADLINE: From Animals to Animats: 17th International Conference on the Simulation of Adaptive Behavior (SAB 2024)

by Jeffrey L Krichmar

Dear Colleagues, CALL FOR PAPERS - SAB 2024 ------------------------------------------- The Simulation of Adaptive Behavior (SAB) interdisciplinary conference brings together researchers in artificial intelligence, artificial life, computer science, cybernetics, ethology, evolutionary biology, neuroscience, robotics, and many other fields, to further our understanding of the behaviors and underlying mechanisms that allow natural animals and artificial agents to adapt and survive in complex, dynamic and uncertain environments. Animats denote the connection between animals and synthetic agents. The conference focuses on models and experiments designed to help characterize and compare various organizational principles and architectures underlying adaptive behavior in real animals and in animats. SAB 2024 solicits contributions dealing with any aspect of adaptive behavior. We especially invite submissions from researchers who connect biology and natural behavior to synthetic agents. Conference papers are peer-reviewed and accepted papers will be published in “From Animals to Animats 17. SAB 2024.” Lecture Notes in Artificial Intelligence, Springer Nature. Venue -------- CalIT2 Auditorium University of California, Irvine Irvine, CA 92697 USA Important Dates ——————————— May 1, 2024: Deadline for paper submission May 1, 2024: Deadline for Workshop and tutorial proposals June15, 2024: Notice of acceptance June 30, 2024: Camera-ready papers September 9-12: Conference dates More details can be found at: https://sab2024.socsci.uci.edu/call-for-papers Best regards, Jeff Krichmar Department of Cognitive Sciences 2328 Social & Behavioral Sciences Gateway University of California, Irvine Irvine, CA 92697-5100 jkrichma(a)uci.edu http://www.socsci.uci.edu/~jkrichma https://sites.uci.edu/sab2024/

March 1, 2024

NeuroML announcements: upcoming HARMONY hackathon in London and Google Summer of Code projects

by Ankur Sinha

Dear all, Apologies for cross posts. We would like to announce 2 upcoming initiatives related to the NeuroML project: a hackathon in London at UCL where you can learn about the model description language and get help converting your model to this standardised format, and 3 Google Summer of Code projects where students or postdocs can be paid for contributing to the NeuroML model development infrastructure. ---- The COMBINE organisation's HARMONY meeting is being held at University College London from April 8-11 this year. Registration for HARMONY is free. https://co.mbine.org/author/harmony-2024/ We (NeuroML editors and developers) will be running hands-on NeuroML hackathons at HARMONY, with the general theme being to help researchers learn more about NeuroML and to build new or convert existing models in NeuroML. We are also keen to help simulator or other application developers integrate NeuroML support (import/export) into their tools. We invite you to register and attend the meeting to: - learn more about how NeuroML supports all stages of the model life cycle - learn how to create your model in NeuroML from scratch - learn how to convert your existing model into NeuroML - learn how the NeuroML APIs (in Python, Java, C++, Matlab) can help you integrate NeuroML support into your application Please share this information with colleagues that may be undertaking new modelling projects where NeuroML may be used. For more information see https://docs.neuroml.org/Events/202404-Harmony.html ---- Google Summer of Code is an initiative to encourage contributions to open source software projects. Generous stipends are provided for successful applicants to work on these projects for a number of months over the summer. The INCF has been a GSoC mentoring organisation for the past number of years, and has helped link up students with mentors to advance various projects in the wider neuroinformatics and computational neuroscience areas. This year we are offering 3 projects related to NeuroML: - Open source, cross simulator, large scale network models in NeuroML and PyNN https://neurostars.org/t/gsoc-2024-project-idea-13-1-open-source-cross-simu… - Implementation of SWC to NeuroML converter in PyNeuroML https://neurostars.org/t/gsoc-2024-project-idea-13-2-implementation-of-swc-… - Incorporate new features into an advanced, cross-platform 3D viewer for NeuroML cells and networks https://neurostars.org/t/gsoc-2024-project-idea-13-3-incorporate-new-featur… This opportunity is particularly relevant for Masters & PhD students currently working in model development/analysis in computational neuroscience. Many students are already reusing/converting/updating existing models as part of their work, or developing tools to handle neuronal model elements such as morphological reconstructions, and this is a great opportunity to get paid by Google to do this! - Closing date for student applications: 2nd April 2024 - Standard period of working on projects: May 27 - Aug/Sept 2024 See: https://www.incf.org/activities/gsoc for more information. ---- More information on NeuroML can be found in our recent preprint (https://www.biorxiv.org/content/10.1101/2023.12.07.570537v1) and in our up to date documentation: https://docs.neuroml.org On behalf of the NeuroML community, Ankur Sinha, Padraig Gleeson, and Angus Silver -- Thanks, Regards, Ankur Sinha (He / Him / His) | https://ankursinha.in Research Fellow at the Silver Lab, University College London | http://silverlab.org/ Free/Open source community volunteer at the NeuroFedora project | https://neuro.fedoraproject.org Time zone: Europe/London

March 1, 2024

Abstract submission extended: International Conference on Neuromorphic Computing and Engineering June 3-6 2024

by Abigail Morrison

Dear colleagues! We have extended the deadline for ICNCE 24 (https://www.icnce-2024.de/) to March 15th. This conference, taking place in Aachen, Germany, June 3-6 2024, will be an interdisciplinary event linking: * Computer Science and Artificial Intelligence including AI applications in industry, science, society and ethics * Neuroscience and Computational Neuroscience, biologically inspired algorithms and brain simulation * Electrical Engineering & Information Technology, neuromorphic, energy-efficient circuits and architetures, including memristive elements, novel materials and devices We have scholarships available to support the participation of MSc and BSc students. Please visit our website to discover more and submit your abstract! All the best, Abigail Morrison -- Prof. Dr. Abigail Morrison Institute for Advanced SImulation (IAS-6) Jülich Research Center & Computer Science 3 - Software Engineering RWTH Aachen http://www.fz-juelich.de/inm/inm-6 http://www.se-rwth.de Office: +49 2428 8097504 Fax # : +49 2461 61-9460 Pronouns: she/her ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Jülich GmbH 52425 Jülich Sitz der Gesellschaft: Jülich Eingetragen im Handelsregister des Amtsgerichts Düren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Stefan Müller Geschäftsführung: Prof. Dr. Astrid Lambrecht (Vorsitzende), Karsten Beneke (stellv. Vorsitzender), Dr. Ir. Pieter Jansens ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

March 1, 2024

Call for Paper: ACM Workshop on The Brain: Creativity and Decay for Computer Science (BCD)

by Carmen Paz Suárez Araujo

Dear Colleagues, We would like to invite you to participate in the 1st ACM Workshop on The Brain: Creativity and Decay for Computer Science (BCD) <https://nd.pja.edu.pl/project/bcd2024/> which is part of the ACM ASIACCS 2024<https://asiaccs2024.sutd.edu.sg/>.This international conference will be held in Singapore from the 1st to 5th of July, 2024. The Paper Submission Deadline is the 11 March 2024 It would be a pleasure for us to receive some submission from your side and to share your expertise on innovative computational models and theories based on brain knowledge, with a high quality international scientific community. We looking forward see you in Singapur next July The BCD Woekshop Organizers Andrzej Przybyszewski, Carmen Paz Suárez Araujo and Ngoc Thanh Nguyen [http://alojamiento.ulpgc.es/webs/firmas/795412678]

March 1, 2024

18 postdoctoral positions in computational/data science at the University of Oslo

by Gaute Einevoll

DSTrain is a 5-year postdoctoral programme launched and managed by the “dScience – Centre for Computational and Data Sciences” at the Faculty of Mathematics and Natural Sciences at the University of Oslo (UiO). DSTrain will award 36 postdoctoral fellowship positions within the overarching frame of data science, emphasizing interaction between data science, computational science, natural sciences, and technology. The fellowships will be of 36 months each, announced in two calls over the program period. We now open for applications to the 1st cohort of 18 fellowship positions, that will start their postdoctoral projects autumn 2024 at UiO. Starting date no later than October 1, 2024. Deadline for application: April 14, 2024 For more information, including on how to apply for the job, see https://www.jobbnorge.no/en/available-jobs/job/255679/dstrain-msca-postdoct… ******************************* Professor Gaute T. Einevoll Department of Physics, Norwegian University of Life Sciences, 1432 Aas, Norway; Department of Physics, University of Oslo, 0316 Oslo, Norway theoretical neuroscience podcast: theoreticalneuroscience.no<https://theoreticalneuroscience.no> popular science podcast: vettogvitenskap.no<https://vettogvitenskap.no> popular science podcast (English only): vettogvitenskap.no/senseandscience<https://vettogvitenskap.no/senseandscience> Co-author of "Principles of computational modeling in neuroscience" (2nd ed): www.cambridge.org/sterratt2<http://www.cambridge.org/sterratt2/> mobile: +47-95124536 email: Gaute.Einevoll(a)nmbu.no<mailto:Gaute.Einevoll@nmbu.no>, Zoom: uio.zoom.us/j/7764062033<https://uio.zoom.us/j/7764062033> twitter: twitter.com/gauteeinevoll<https://twitter.com/gauteeinevoll> “If you sleep in a democracy, you may wake up with a dictator.”

March 1, 2024

Reminder: Call for applications for Systems Vision Science Virtual Summer School & Symposium, June 19 -July 12, 2024

by Pavlovic, Maria

Systems Vision Science Virtual Summer School & Symposium: June 19th – July 12th, 2024 -------------------------------- Applications are invited for a <https://summerschool.lizhaoping.org/virtual-systems-vision-science-summer-s…> virtual edition of <https://summerschool.lizhaoping.org/> the Systems Vision Science Summer School and Symposium that took place in Max Planck Institute for Biological Cybernetics in Tuebingen, Germany in August 2023. This year, the virtual edition enables students to attend from afar by formal lectures via Zoom and informal and social communications via a Slack channel. Systems Vision Science combines computational, behavioral, and neuroscience methods to discover functions and algorithms for vision in various brain regions and their implementations in neural circuits. This summer school is designed for everyone interested in gaining a systems level understanding of biological vision. We plan a coherent, graduate-level, syllabus on the integration of experimental data with theory and models. The syllabus content will be very similar to the edition in 2023, the learning format, the delivery, and social interactions will be adjusted to suit the virtual format. Experience or knowledge in (A) computational methods, (B) visual psychophysics, and (C) vision neuroscience, is not required. However, experience in at least one of (A), (B), and (C), and a readiness to learn, is expected. The Summer School will be followed by a Systems Vision Science Virtual Symposium on July 12th. All admitted summer school students will be invited to attend this symposium and are encouraged to submit for a presentation at the symposium. The symposium will also feature two invited keynote presentations. A certificate of completion of the summer school course will be provided after the student’s successful completion of the summer school. -------------------------------- Important Dates: March 31, 2024 Deadline for applications April 12, 2024 Notification of acceptance April 29, 2024 Registration fees due June 19 – Virtual Systems Vision Science Summer School takes place July 10, 2024 (formal lectures via Zoom and informal and social communications via a Slack channel) July 12, 2024 Virtual Systems Vision Science Symposium takes place (3 -7 pm German time) -------------------------------- Please click <https://summerschool.lizhaoping.org/virtual-systems-vision-science-summer-s…> here to find more details and to apply by March 31, 2024. Summer School admission will be based on interest/motivation and prior knowledge/experience of the applicants, and on how much the applicants could benefit from participation. Please direct inquiries to <mailto:svs.summerschool@tue.mpg.de> svs.summerschool(a)tue.mpg.de -------------------------------- Organizing Team Li Zhaoping Maria Pavlovic Junhao Liang Max Planck Institute for Biological Cybernetics University of Tuebingen <http://www.lizhaoping.org> www.lizhaoping.org .

March 1, 2024

Multiple postdoctoral positions in computational neuroscience (neural coding), Hamburg, Germany

by Stefano Panzeri

I am opening three fully funded postdoctoral positions in computational neuroscience at the University Medical Center Hamburg-Eppendorf (UKE) in Hamburg, Germany. We investigate how networks of neurons in the cerebral cortex encode, process and transmit information to generate behaviors such as sensation and decision-making. To address these issues, we develop and use information-theoretic and machine learning methods to study population coding, as well as neural network models to individuate mechanisms for neural information processing and generation of functions. Our laboratory enjoys extensive long-term international collaborations with experimental laboratories, including with Chris Harvey at Harvard Medical School, Wei- Lee at Boston Children’s Hospital, Tommaso Fellin and Alessandro Gozzi at IIT, Mriganka Sur at MIT, as well as collaborations with experimental laboratories in Hamburg (Andreas Engel, Tobias Donner, Ileana Hanganu-Opatz). The laboratory also offers a thriving, ambitious and well-funded research environment (with funds from the NIH Brain Initiative, the Simons Foundation, the European Union, the ERC). The lab provides ample opportunities for advanced training and for personal scientific growth. We seek candidates holding a PhD in a numerate or neuroscientific discipline, with a solid computational background and a keen interest in neuroscience. They must be highly motivated and creative individuals who want to work in a dynamic, multi-disciplinary research environment and be happy to interact with both experimental and theoretical neuroscientists. The jobs are available starting immediately and applications will be considered as soon as they are received and until the position is filled. Funding is available for several years and a minimum commitment of two years is expected by interested candidates. Interested applicants are encouraged to email me (stefano.panzeri(a)gmail.com) as soon as possible, to inform me of the interest for the position and initiate a discussion about research projects. For recent relevant publications from my lab, see: Kuan A et al (2024) Synaptic wiring motifs in posterior parietal cortex support decision-making *Nature:* advanced online publication (doi 10.1038/s41586-024-07088-7) Celotto M et al, An information-theoretic quantification of the content of communication between brain regions, *NeurIPS* 36, 2023 Panzeri S, et al (2022) The structures and functions of correlations in neural population codes. *Nature Reviews Neuroscience* 23: 551-567 Koren V., Panzeri S (2022) Biologically plausible solutions for spiking networks with efficient coding. *NeurIPS 35, 2022,* Curreli S, et al (2022) Complementary encoding of spatial information in hippocampal astrocites. *PLoS Biology* 20: e3001530. Valente, M. et al (2021), Correlations enhance the behavioral readout of neural population activity in association cortex. *Nature Neuroscience*, 24, 975–986 Chong, E. et al (2020) Manipulating synthetic optogenetic odors reveals the coding logic of olfactory perception. *Science* 368, 1329. Runyan C. A., et al (2017) Distinct timescales of population coding across cortex, *Nature*: 548: 92-96. Panzeri S., et al (2017) Cracking the neural code for sensory perception by combining statistics, intervention and behaviour. *Neuron* 93: 491-507 Pica, G. et al (2017) Quantifying how much sensory information in a neural code is relevant for behavior, *NeurIPS 30, 2017* Thanks Stefano Panzeri (stefano.panzeri(a)gmail.com)

Feb. 29, 2024

NeuroDataReHack data reuse workshop and Open Neurodata Showcase

by Ryan Ly

Dear colleagues, The Neurodata Without Borders (NWB) <http://nwb.org/> team is organizing two upcoming events: NeuroDataReHack and the Open Neurodata Showcase. NeuroDataReHack 2024 July 8-12, 2024 Janelia Research Campus, Ashburn, Virginia, USA The goal of NeuroDataReHack is to train participants to generate new insights from existing neurophysiology data through secondary analysis. The DANDI Archive <http://dandiarchive.org/> now has 200+ neurophysiology datasets in the Neurodata Without Borders <http://nwb.org/> format spanning many species, brain areas, task types, and imaging modalities. These include large-scale datasets from the Allen Institute, the MICrONS project, and the International Brain Laboratory, as well as diverse contributions from neuroscience labs around the world. NeuroDataReHack will teach attendees how to maximally utilize the data and computational resources of the DANDI Archive to incorporate existing data into their scientific workflows. Example projects include but are not limited to: - Determine whether your scientific findings are present in another species or brain area. - Guide the generation of hypotheses for a new project or grant application. - Showcase the capabilities of your tool or analysis on published data from another lab. - Explore follow-up questions to a study that has published data. The workshop is free to attend, and on-site housing and meals will be provided. Travel support is limited. Learn more and apply at the NeuroDataReHack 2024 website <https://neurodatawithoutborders.github.io/nwb_hackathons/HCK21_2024_Janelia…>. The deadline to apply is March 10. *Open Neurodata Showcase* July 2, 2024, 9-10:30 AM PDT Virtual In the week before NeuroDataReHack, the NWB team is organizing a virtual poster session on the Gather platform to bring together data contributors and anyone interested in reusing existing neurophysiology data. This virtual event offers a unique opportunity for participants to explore and engage in discussions about particular dandisets, and allows data contributors to showcase their projects. Anyone interested in using open neurophysiology datasets or presenting on their published neurophysiology datasets is welcome to attend. Learn more and register at the event website <https://neurodatawithoutborders.github.io/nwb_hackathons/HCK20_2024_OpenNeu…> . If you have any questions, please contact us at contact(a)nwb.org. Kind regards, Ben Dichter, CatalystNeuro Oliver Rübel, Lawrence Berkeley National Laboratory Ryan Ly, Lawrence Berkeley National Laboratory -- Ryan Ly Scientific Data Engineer Lawrence Berkeley National Laboratory 1 Cyclotron Road Mail Stop 59R4104 Berkeley, CA 94720 Email: rly(a)lbl.gov Pronouns: he/him

Feb. 29, 2024

Post-Doctoral Research Associate Neuron Modeling for Transcranial Electric and Magnetic Stimulation

by David Zhou

(Forwarding on behalf of Warren Grill) We seek a highly-motivated individual to conduct research on computational modeling of cortical neuron activation by transcranial electric and magnetic stimulation (TES and TMS). We have an NIH-funded R01 project to develop and disseminate computational neuron models and their integration with TES and TMS electric field simulations in the popular SimNIBS software package. This project is a collaboration between Dr. Warren Grill and Dr. Angel Peterchev at Duke University and Dr. Axel Thielscher at the Danish Research Center for Magnetic Resonance and Technical University of Denmark. This work is part of a long-standing research program at Duke for rigorous computational modeling and experimental characterization of both invasive and noninvasive neurostimulation. The strong interdisciplinary and collaborative environment at Duke is ideal for our multi-scale modeling research efforts. An earned PhD and previous experience in computational neurostimulation modeling are required as are excellent communication skills. This is a full-time position with University Benefits and provides exceptional opportunities for interdisciplinary research and career development. We value all dimensions of diversity and believe that the best solutions to challenging problems will come from working with people from a broad range of backgrounds and experiences. For consideration submit a cover letter, CV, and the names and contact information of three professional references here: https://academicjobsonline.org/ajo/jobs/27152 ---------- Forwarded message --------- From: Stephanie Jones <stephanie_jones(a)brown.edu> Date: Thu, Feb 29, 2024 at 9:18 AM Subject: Fwd: Post-Doc or Staff Scientist/Engineer Position To: Thomas Serre <thomas_serre(a)brown.edu>, Michael J Frank < Michael_Frank(a)brown.edu> Cc: Matthew Nassar <matthew_nassar(a)brown.edu>, Wilson Truccolo < wilson_truccolo(a)brown.edu>, David Zhou <david.wei.zhou(a)gmail.com>, Carina Curto <carina_curto(a)brown.edu> Can we share the announcement below with the comp neuro community? ********************************************* *Stephanie R. Jones, PhD* *Professor * *Department of Neuroscience * *Brown University * *Stephanie_Jones(a)Brown.edu* *https://sites.brown.edu/stephanie-r-jones-lab/ <https://sites.brown.edu/stephanie-r-jones-lab/>* *@drstephjones* *Human Neocortical Neurosolver* *https://hnn.brown.edu <https://hnn.brown.edu>* *@HNNsolver* Begin forwarded message: *From: *"Warren M Grill, Ph.D." <warren.grill(a)duke.edu> *Subject: **Post-Doc or Staff Scientist/Engineer Position* *Date: *February 29, 2024 at 8:26:43 AM EST *To: *"stephanie_jones(a)brown.edu" <stephanie_jones(a)brown.edu> Dear Stephanie I hope this finds you well. We are recruiting a new post-doc or staff scientist/engineer with experience in neural modeling, and I would appreciate you recommending this opportunity to high caliber candidates in your department, as well as spreading the word broadly in your community. Thank you. All the best, Warren _ _ _ _ _ Warren M. Grill, Ph.D. Edmund T. Pratt, Jr. School Distinguished Professor of Biomedical Engineering Duke University Editor in Chief, Journal of Neural Engineering Fellow of AIMBE, BMES, IAMBE, and NAI (he/him/his) https://grill-lab.pratt.duke.edu warren.grill(a)duke.edu (919) 660-5276 Phone (919) 684-4488 Fax CIEMAS Room 1139 Mail to: Duke University Department of Biomedical Engineering Fitzpatrick CIEMAS, Room 1427 101 Science Drive Box 90281 Durham NC 27708-0281 Post-Doc or Staff Scientist/Engineer Position

Feb. 29, 2024