- Comp-neuro - lists.cnsorg.org

[SOFTWARE] Open-Source Neurodynamic Modeling Software PyRates

by Richard Gast

The Brain Networks Group and Neurophysics Department of the Max-Planck Institute for Human Cognitive and Brain Sciences Leipzig released an open-source Python software for neural network and dynamical systems modeling: PyRates (https://github.com/pyrates-neuroscience/PyRates, https://www.cbs.mpg.de/departments/neurophysics/software/pyrates) Main features of PyRates are: - Intuitive and re-usable model definitions via YAML files or purely in Python - networkx representations of each model allows to compute graph theoretic measurements on the fly (https://networkx.github.io/) - Efficient numerical simulations via scipy, numpy and tensorflow - evolutionary model parameter optimization - large-scale parameter sweeps on single machines and compute clusters - parameter continuation and bifurcation analysis via auto-07p For a full list of features and their documentation, check out the PyRates documentation at https://pyrates.readthedocs.io/en/latest/. For feedback and contributions, contact us via our GitHub repository: https://github.com/pyrates-neuroscience/PyRates. Install instructions can be found there as well!

July 1, 2020

Opening for Research Associate

by Paola Malerba

The Malerba Lab at the Abigail Wexner Research Institute Battelle Center for Mathematical Medicine in Columbus, Ohio is looking for a new Research Associate. The lab focuses on brain rhythms, especially during sleep, and their role in cognition (memory and motor skills). We are looking for a detail-oriented, adaptable and curious mind, who has graduate-level training and at least one year of experience working in a research lab. The position (initially for one year, with possible extension tied to lab funding) will be centered on high-level quantitative EEG analysis and simulations of neural network dynamics related to ongoing research projects. Demonstrated proficiency in programming (Matlab and python) is required, and so is interest in how brain dynamics is tied to behavior. Some neuroscience training is desirable. A small part of the position will be to screen and coordinate research subjects for participation to ongoing studies, hence timeliness and people skills are necessary. The Research Institute at NCH is a collaborative interdisciplinary environment, that strives to apply the most modern knowledge to challenging questions with high impact. The Malerba lab is part of the Center for Mathematical Medicine, and contributes to the Chronic Brain Injury collaborative at Ohio State University and the Neurodevelopmental Research Interest Group at NCH. We have collaborations at local, national and international level and are developing strategies to introduce brain dynamics during sleep to the toolbox of medical interventions. Link to the full ad and application page: https://external-nationwidechildrens.icims.com/jobs/24247/research-associat… Informal inquiries to MalerbaLab(a)nationwidechildrens.org are welcome. Paola Malerba, PhD Principal Investigator, Battelle Center for Mathematical Medicine Abigail Wexner Research Institute, Nationwide Children’s Hospital Assistant Professor, Ohio State University Department of Pediatrics, College of Medicine Biophysics Graduate Program Neuroscience Graduate Program Malerba Lab at BCMM <https://www.nationwidechildrens.org/research/areas-of-research/battelle-cen…> 575 Children’s Crossroad WB5145 Columbus, OH 43215 Phone: (614) 355-5894

June 30, 2020

Bernstein Conference 2020 - abstract submission deadlines extended

by a.dorrn＠fz-juelich.de

Each year the Bernstein Network invites the international computational neuroscience community to the annual Bernstein Conference for intensive scientific exchange. It has established itself as one of the most renown conferences worldwide in this field, attracting students, postdocs and PIs from around the world to meet and discuss new scientific discoveries. This year’s Bernstein Conference will take place September 29 – October 1, 2020 and will be held entirely online for the first time. It will be followed by the online Bernstein PhD Symposium on October 2, 2020 www.bernstein-conference.de<http://bit.ly/BC_online> ____ NEWS * Participation will be free of charge * Registration will open mid-July * Abstract submission deadlines have been extended: * July 17, 2020: deadline for submission of abstracts to be considered for Contributed Talks * August 21, 2020: deadline for abstract submission * Find more information here: bit.ly/BC20abstracts<http://bit.ly/BC20abstracts> * Selected satellite workshops are now published: bit.ly/BC20workshops<https://bit.ly/BC20workshops> * more information regarding the PhD symposium will follow soon ____ INVITED SPEAKERS William Bialek (Princeton University, USA) Michael Brecht (Humboldt Universität zu Berlin, Germany) Laura Busse (LMU Munich, Germany) Megan Carey (Champalimaud Center for the Unknown, Lisbon, Portugal) Rosa Cossart (Institut de neurobiologie de la méditerranée, Marseille, France) Ann Hermundstad (Janelia Research Campus, Ashburn, USA) Roozbeh Kiani (New York University, New York City, USA) Vanessa Ruta (The Rockefeller University, New York City, USA) David Sussillo (Google AI, Mountain View, USA) Srdjan Ostojic (L'École normale supérieure, Paris, France) Fred Wolf (Max-Planck Institute for Dynamics and Self-Organization, Göttingen, Germany) ____ CONFERENCE COMMITTEE Udo Ernst (Conference Chair) Elad Schneidmann (Program Chair) Julijana Gjiorgjieva (Program Vice Chair) Tim Vogels (Workshop Chair) Marion Silies (Workshop Vice Chair) Henning Sprekeler (Conference Host) Danielle Bassett, Matthew Botvinick, Peter Dayan, Alain Destexhe, Tim Gollisch, Stephanie Palmer, Nathalie Rochefort, Nicole Rust, Gasper Tkacik ____ For any further questions, please contact: bernstein.conference(a)fz-juelich.de<mailto:bernstein.conference@fz-juelich.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

June 30, 2020

Information theory workshop at CNS*2020 -- call for contributed talks

by Joseph Lizier

Dear all, We are pleased to announce that the Workshop on Methods of Information Theory in Computational Neuroscience<http://lizier.me/joseph/conferences/202007-CNS2020-ITW/> will be held once again at the CNS*2020<https://www.cnsorg.org/cns-2020> conference, online. The workshop will be held during 3 sessions over two days of the main conference, July 21 (15:00-18:30 CET) and July 22 (09:00-12:30, 15:00-18:30 CET). Our confirmed speakers so far include the following (schedule available soon): * Oliver Cliff, The University of Sydney -- "Exact Inference of Linear Dependence Between Multiple Autocorrelated Time Series" * Abdullah Makkeh, University of Goettingen -- "A differentiable measure of pointwise shared information" * Thomas Parr, University College London -- "Inferring what to do" * Daniel Polani, University of Hertfordshire -- TBA * Maryam Shanechi, University of Southern California -- TBA * Naotsugu Tsuchiya, Monash University -- "Structure of information to understand the physical basis of consciousness" * ... more TBA! Also, we would like to call for contributions of talks. If you are interested in contributing a talk, please send a title and abstract to Joseph Lizier (joseph.lizier(a)sydney.edu.au<mailto:joseph.lizier@sydney.edu.au>) at your earliest convenience (earlier submissions will be prioritised) Please see our website https://bit.ly/cns2020itw for more details. We hope you will join us there! Organising Committee: Joseph Lizier Justin Dauwels Lubomir Kostal Michael Wibral

June 30, 2020

Computation research assistant - DZNE Berlin

by Silvia VianadaSilva

Job announcement: We are looking for a computational neuroscience research assistant to join my newly formed lab at the DZNE in Berlin. The qualification level for this position is a Bachelor in neuroscience, data science, bioinformatics or similar qualifications in another related field. The requirements are some basic knowledge of neuroscience and proficiency in Matlab and/or Python. My lab will be doing electrophysiology recordings in freely behaving mice in the field of neurodegeneration. Spiking and local field potential data will be the main focus of analysis. This is a 1year position (until end of July 2021) to help the team with analysis of tetrode and silicon probe recordings from awake, freely moving mice. Although the position is purely computational it will give the opportunity to closely work with the experimental side of the lab and some training can be provided if it is of interest to the potential candidate. Being a team player is an essential requirement. Position to be filled asap! We are committed to increase diversity in science and would specially encourage women and URM to apply. Come join us in the heart of Berlin. Please send your application or further questions to silvia.vianadasilva(a)dzne.de<mailto:silvia.vianadasilva@dzne.de> Thank you in advance, Silvia Silvia Viana da Silva Junior Research Group Leader DZNE Berlin Deutsches Zentrum für Neurodegenerative Erkrankungen e.V. (DZNE) c/o Charité - Universitätsmedizin Berlin Charitéplatz 1 10117 Berlin

June 30, 2020

[JOBS] PhD @ Italian Institute of Technology, Ferrara

by Alessandro D'Ausilio

PHD PROGRAM in TRANSLATIONAL NEUROSCIENCES AND NEUROTECHNOLOGIES The Center for Translational Neurophysiology of Speech and Communication (CTNSC) @ Italian Institute of Technology (IIT), is opening 4 PhD positions for the Academic Year 2020-2021. Research areas: - Improving performance and biocompatibility of electrode arrays for brain-computer interfaces - Organic neuroelectronics for multimodal recordings and stimulation of the brain in vivo - Investigation of sensorimotor functions in animal models - Machine learning applications to multimodal brain and speech signals - Human neurophysiology of speech and sensorimotor communication - Cortical recordings in human patients during awake Neurosurgery - Hardware and software development for innovative exploration of brain signals Who: chemists, physicists, materials scientists, computer scientists, biomedical/electrical engineers, biologists, biotechnologist, medical doctors and experimental psychologists eager to work in an international and multidisciplinary team. Where: The CTNSC (https://www.iit.it/centers/ctnsc-unife <https://www.iit.it/centers/ctnsc-unife>) is hosted by the University of Ferrara (UNIFE) in a prestigious historical building in the city center. UNIFE is one of the oldest Universities (founded in 1391) and one of the excellence Universities in Italy nowadays for research. Ferrara is well connected by train and freeway (30-min to Bologna, 40-min to Padua, 60-min to Venice and their airports), bustling with students as it is an affordable University city (https://whc.unesco.org/en/list/733 <https://whc.unesco.org/en/list/733>). General INFO: http://www.unife.it/studenti/dottorato/it/corsi/riforma/neuroscience <http://www.unife.it/studenti/dottorato/it/corsi/riforma/neuroscience> Application INFO: http://www.unife.it/studenti/dottorato/concorsi/selection <http://www.unife.it/studenti/dottorato/concorsi/selection> DEADLINE: 24 July 2020 Contacts: Luciano Fadiga (CTNSC Director): luciano.fadiga(a)iit.it <mailto:luciano.fadiga@iit.it> Thierry Pozzo: thierry.pozzo(a)iit.it <mailto:thierry.pozzo@iit.it> Fabio Biscarini: fabio.biscarini(a)iit.it <mailto:fabio.biscarini@iit.it> Michele Bianchi: michele.bianchi(a)iit.it <mailto:michele.bianchi@iit.it> Antonino Casile: antonino.casile(a)iit.it <mailto:antonino.casile@iit.it> David Papo: david.papo(a)iit.it <mailto:david.papo@iit.it> Alessandro D’Ausilio: alessandro.dausilio(a)iit.it <mailto:alessandro.dausilio@iit.it>

June 30, 2020

PhD offer "Ultra-fast vision using Spiking Neural Networks" coordinated by Laurent Perrinet (CNRS - Marseille, France)

by Laurent Perrinet

Dear colleagues, Applications are welcome for a fully funded doctoral position at INT <http://www.int.univ-amu.fr/?lang=en> in Marseille <https://en.wikipedia.org/wiki/Marseille>, France. Your mission will be to build ultra-fast vision algorithms using event-based cameras and spiking neural networks. The project is funded by the APROVIS3D <https://laurentperrinet.github.io/grant/aprovis-3-d/> grant (ANR-19-CHR3-0008-03) and will be coordinated by Laurent Perrinet <https://laurentperrinet.github.io/>. The work will be carried out in collaboration with a leading computer science institute at Université Côte d’Azur (Sophia Antipolis, France), the Laboratoire d’Informatique, Signaux et Systèmes de Sophia-Antipolis (I3S, UMR7271 - UNS CNRS), that will be part of the supervision team. We are seeking candidates with a strong background in machine learning, computer vision and computational neuroscience. To obtain further information, please visit https://laurentperrinet.github.io/post/2020-06-30_phd-position <https://laurentperrinet.github.io/post/2020-06-30_phd-position> and contact me @ Laurent.Perrinet(a)univ-amu.fr <mailto:Laurent.Perrinet@univ-amu.fr>. To candidate, follow instructions on the dedicated server from the CNRS <https://bit.ly/3igRji4>. The starting date is set to October 1st, 2020 and the appointment is for 36 month. Applications are welcome immediately. Thanks for distributing this announcement to potential candidates! Laurent -- Laurent Perrinet - INT (UMR 7289)/CNRS https://laurentperrinet.github.io/ <https://laurentperrinet.github.io/>

June 30, 2020

Can you define behavior?

by Adam J Calhoun

Hi, Ahmed El Hady and I are writing to you to request your participation in a brief survey (less than 10 minutes). We are interested in how people from different disciplines define “behavior”. If you are willing to answer some questions on what constitutes behavior, please take the survey (link below)! Survey participants can enter to win a $50 Amazon gift card. Survey link: https://princetonsurvey.az1.qualtrics.com/jfe/form/SV_aWUZqxtDbUCFGg5 Your participation in the survey is completely voluntary and all of your responses will be kept confidential. No personally identifiable information will be associated with your responses to any reports of these data. The Princeton Institutional Review Board has approved this survey. Should you have any comments or questions, please feel free to contact me at adamjc(a)princeton.edu. Thank you very much for your time and cooperation. Sincerely, Adam Calhoun and Ahmed El Hady

June 30, 2020

Senior Post-Doc Fellowship Grant in Neuromorphic Computing/Hardware

by bernabe

Dear colleagues, The Neuromorphic Group at the IMSE (Sevilla Microelectronics Institute http://www.imse-cnm.csic.es/neuromorphs) is looking for highly motivated senior post-doc candidates to apply for a Research Felloowship from the Andalusian Government. Candidates must have a PhD degree between 5 and 12 years from the graduation date. The 4-year grant comes with a companion 160k€ budget for initial research expenses (for hiring students, technicians, traveling, equipment, or other expenses). Minimum salary is 35k€, while the full salary is negotiable with the hosting institution or research group. The application should include a brief (normalized) CV, a brief summary of the candidate's research activities, and a research proposal at the hosting institution. Applicants interested in presenting a Neuromorphic Computing/Hardware proposal please contact bernabe(a)imse-cnm.csic.es to jointly prepare the proposal. --

June 29, 2020

Postdoc and PhD positions in EU project on motor control and movement augmentation

by Tobias Pistohl

*Postdoc and PhD positions in EU project on motor control and movement augmentation* Bernstein Center, University of Freiburg NEXT lab, Università Campus Bio-Medico di Roma Department of Bioengineering, Imperial College London Multiple postdoc and PhD positions are available in the labs of Carsten Mehring (University of Freiburg), Domenico Formica and Giovanni di Pino (Università Campus Bio-Medico di Roma) as well as Dario Farina and Etienne Burdet (Imperial College London), on motor control and movement augmentation, in the context of the EU project NIMA. The NIMA project aims to develop body, muscle and neural interfaces for controlling additional degrees-of-freedom of supernumerary limbs, devices or computers independently from movements of the natural limbs. We have formed a team of leading experts in neuroscience, neurotechnology, human-machine interfaces, robotics, and ethics from various institutions across Europe (University of Freiburg, Università Campus Bio-Medico di Roma, Sorbonne Université, Tecnalia Foundation, Imperial College London) to accomplish the following objectives: 1) Pushing the borders of technology by creating non-invasive interfaces with multimodal sensory feedback that will allow effortless control of multiple limbs or objects; 2) Understanding the cognitive and neural mechanisms underlying movement augmentation, how it can be functionally embodied and how this can be facilitated by multimodal feedback, by combining neuromodulation, computational modelling and behavioural experiments; 3) Applying movement augmentation to extend human capacities and preparing the ground for exploitation, using different testbeds; 4) Evaluating the ethical and safety aspects of movement augmentation. Multiple positions are available at the different institutions listed above from October, 1^st 2020 on. Interested applicants with suitable background should submit a CV, a letter of motivation (max. 1 page) and indicate which of the institution(s) they are interested in to Dr. Tobias Pistohl (tobias.pistohl(a)bcf.uni-freiburg.de <mailto:tobias.pistohl@bcf.uni-freiburg.de>). In case of questions you can contact Dr. Tobias Pistohl or the PIs of the different labs: - Carsten Mehring <carsten.mehring(a)biologie.uni-freiburg.de <mailto:carsten.mehring@biologie.uni-freiburg.de>>, for positions at University of Freiburg - Domenico Formica<d.formica(a)unicampus.it <mailto:d.formica@unicampus.it>> and Giovanni Di Pino <g.dipino(a)unicampus.it <mailto:g.dipino@unicampus.it>> for positions at UCBM - Etienne Burdet <e.burdet(a)imperial.ac.uk <mailto:e.burdet@imperial.ac.uk>> and Dario Farina <d.farina(a)imperial.ac.uk <mailto:d.farina@imperial.ac.uk>> for positions at Imperial College London The University of Freiburg is in the southwest of Germany close to the French and Swiss borders. Freiburg has a vibrant academic community and our group is part of the Bernstein Center Freiburg (http://www.bcf.uni-freiburg.de) which provide first-class environments for research on Computational Neuroscience and Neurotechnology. NEXTlab at UCBM (www.unicampus.it/next <http://www.unicampus.it/next>) is a multidisciplinary research group working at developing new tools and methods to study and model human motor control, and to improve the embodiment of robotic hand prostheses and supernumerary limbs. The group at Imperial College London is pursuing basic and applied research in human interface (https://www.imperial.ac.uk/human-robotics, https://www.imperial.ac.uk/people/d.farina)

June 29, 2020