- Comp-neuro - lists.cnsorg.org

Call for Applications - 2018 Nengo Summer School

by Peter Blouw

[All details about this school can be found online at https://www.nengo.ai/summerschool] The Centre for Theoretical Neuroscience at the University of Waterloo is excited to announce a special version of our annual Nengo summer school that will host the* first public access* to *Braindrop*, a new mixed analog-digital neuromorphic chip developed in collaboration with Stanford and Yale. In addition to introducing Braindrop, this two-week school will teach participants to use the Nengo simulation package to build state-of-the-art cognitive and neural models to run both in simulation and on neuromorphic hardware. Nengo provides users with a versatile and powerful environment for designing cognitive and neural systems, and has been used to build what is currently the world's largest functional brain model, Spaun [1]. Nengo is also being used to program a variety of state-of-the-art neuromorphic chips, including Braindrop! For a look at last year's summer school, check out this short video: https://goo.gl/4tVUkQ We welcome applications from all interested graduate students, research associates, postdocs, professors, and industry professionals with a relevant background. [1] Eliasmith, C., Stewart T. C., Choo X., Bekolay T., DeWolf T., Tang Y., Rasmussen, D. (2012). A large-scale model of the functioning brain. Science. Vol. 338 no. 6111 pp. 1202-1205. DOI: 10.1126/science.1225266. [ http://compneuro.uwaterloo.ca/files/publications/eliasmith.2012.pdf] Application Deadline: February 15, 2018 *Format*: A combination of tutorials and project-based work. Participants are encouraged to bring their own ideas for projects, which may focus on testing hypotheses, modeling neural or cognitive data, implementing specific behavioural functions with neurons, expanding past models, or providing a proof-of-concept of various neural mechanisms. Hands-on tutorials, work on individual or group projects, and talks from invited faculty members will make up the bulk of day-to-day activities. A project demonstration event will be held on the last day of the school, with prizes for strong projects! Participants will have the opportunity to learn how to: - interface Nengo with various kinds of neuromorphic hardware - build perceptual, motor, and cognitive models using spiking neurons - model anatomical, electrophysiological, cognitive, and behavioural data - use a variety of single cell models within a large-scale model - integrate machine learning methods into biologically oriented models - interface Nengo with cameras and robotic systems - implement modern nonlinear control methods in neural models - and much more... *Date and Location:* June 3th to June 15th, 2018 at the University of Waterloo, Ontario, Canada. *Applications*: Please visit http://www.nengo.ai/summerschool, where you can find more information regarding costs, travel, lodging, along with an application form listing required materials. If you have any questions about the school or the application process, please contact Peter Blouw (peter.blouw(a)appliedbrainresearch.com) We look forward to hearing from you!

Jan. 4, 2018

Call for postdoctoral researcher in Kyoto university: Neuro-imaging with endoscope microscopy

by Hidetoshi Urakubo

Dear Colleagues, We are seeking highly motivated post doctoral researchers working for a project (from 2017 October to 2023 March) developing neuro-imaging with endoscope microscopy to reveal to reveal function of corticostriatal circuit of mouse brain. We require a candidate with solid background on one of the following topics: local circuit model of neurons, neural basis of reinforcement leaning, and signal processing of neuronal activity. For this position, basic qualifications include PhD in relevant fields with proven track record of peer-reviewed publications, as well as excellent verbal and written communication skills in English and/or Japanese. The researcher will participate in the project with our researchers from various backgrounds including computational neuroscience, systems biology, bioinformatics, mathematical engineering, and machine learning. Our laboratory is also collaborating with Advanced Telecommunications Research Institute International (ATR), University of Tokyo, Okinawa institute of science and technology (OIST), RIKEN Brain Science Institute, and other international laboratories. Sincerely, Hidetoshi Urakubo [Job title and Job description] Title is a Full-time Researcher / Full-time Research Engineer Work location is in the main campus of Kyoto University. (Yoshida honmachi 36-1, Sakyo-ku, Kyoto-city, Japan. 606-8501) The contract is annually renewable up to the end of those projects based on the evaluation. Salary will be commensurate with qualifications and experience. Social insurance will be applied. Days off include weekends, public holidays, Year-end and New Year holidays, Foundation Day, and summer vacation. These and other provisions are in accordance with Kyoto University’s regulations. [Application and required documents] Please send the following five materials to the address below, either in printed or electronic form: 1. Complete CV 2. List of publications 3. Reprints of 1 to 3 major publications 4. Document (one or two pages in A4 or letter size) describing: - Summary of your previous research - Interests and proposal for research 5. Two letters of recommendation (including one from the current supervisor, if available) [Selection process] Selection will be made based on application screening and interviews. [Requirements] Applicants must: - have a Ph.D. (or be near completion). - have strong motivations and ambitions to participate in the research above. [Deadline for application] Feb. 15th (will remain open if positions are not filled) [Send application to] Shigeyuki Oba Integrated Systems Biology Laboratory (Prof. Shin Ishii), Graduate School of Informatics, Kyoto University Yoshida-honmachi, Sakyo, Kyoto 606-8501, Japan Email: Shigeyuki Oba <ishii-secr [at] sys.i.kyoto-u.ac.jp> http://ishiilab.jp/kyoto/en/

Jan. 4, 2018

Florence Levy Kay Fellow in Philosophy and Neuroscience

by Paul Miller

*Florence Levy Kay Fellow in Philosophy and Neuroscience* *[POSTDOC] BRANDEIS UNIVERSITY*in Waltham, Massachusetts invites applications for a two-year, non-renewable Florence Levy Kay Fellowship in Philosophy and Neuroscience, beginning Fall 2018.The Kay Fellow will be appointed as a faculty member at the rank of lecturer with a joint appointment in Philosophy and Neuroscience. The ideal applicant will have an educational background in philosophy and neuroscience, and a demonstrated ability to foster formal and informal conversations among philosophers, psychologists, and neuroscientists.The postdoctoral fellow will actively pursue his or her own research and teach one course per semester, including a course in Neuro-ethics, while participating in and contributing to the intellectual life of the Philosophy Department, Neuroscience Program and the Brandeis community.Applicants must have a Ph.D. in hand by the start of the fellowship. The fellowship includes a salary of $57,500, plus benefits, with moving expenses (around $1,500), and a research fund of up to $4,000 per year.Questions about the position may be directed to Julie Seeger at jseeger(a)brandeis.edu. Applications, which should be submitted through AcademicJobsOnline at https://academicjobsonline.org/ajo/jobs/10500, should include a CV, a brief statement of research and teaching interests, a succinct writing sample, and three letters of reference.First consideration will be given to applications submitted by January 15, 2018. Brandeis University has a strong institutional commitment to the achievement of excellence and diversity among its faculty, students and staff.Women and underrepresented minority candidates are encouraged to apply.Consideration will also be given to candidates whose experience in teaching, research, or community service has prepared them to contribute to diversity and excellence.Brandeis University is an affirmative action/equal opportunity employer.All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age or protected veteran status.

Jan. 2, 2018

15 Academic Positions at the University of Melbourne

by Uwe Aickelin

[Apologies if you receive multiple copies of this announcement] The University of Melbourne School of Computing and Information Systems is seeking applicants for 15 continuing (i.e. tenure-track / permanent ) Lecturer and Senior Lecturer positions. We seek dynamic academics with expertise in Computer Science or Information Systems who have the potential to build a stellar teaching and research career at Melbourne. The School of Computing and Information Systems is an international research leader in computer science, information systems and software engineering. In this discipline, the School was ranked number 1 in Australia and 13th in the world in the 2016 QS World University Ranking exercise. We are particularly seeking applicants with expertise in the areas of business information systems, health informatics/digital health, software engineering, cybersecurity, or high-performance and distributed systems, but applicants whose work is aligned with any of the research groups in the School are encouraged to apply. Applications close on 15 Jan 2018. The positions are advertised at http://go.unimelb.edu.au/jsp6, where the formal position description and a brochure with more information are available. Contact Karin Verspoor karin.verspoor(a)unimelb.edu.au<mailto:karin.verspoor@unimelb.edu.au> for enquiries and further information.

Jan. 2, 2018

Department of Scientific Computing

by Gordon Erlebacher

Dear Colleagues, Florida State State University’s Department of Scientific Computing (DSC; https://sc.fsu.edu) is currently accepting applications for its interdisciplinary Masters and PhD programs. These programs provide graduate students broad and deep knowledge of the fundamental techniques used in computational modeling and data science, significant exposure to at least one application domain, and the opportunity to conduct significant original research in algorithms and/or applications relating to computational and data science,including deep learning and neuroscience. A brief overview of the MS and PhD programs can be found at http://sc.fsu.edu/education . To be considered for funding, the deadline for application for the Fall 2018 cohort is January 15, 2018. Application information can be found at https://www.sc.fsu.edu/graduate/application. Self-funded applicants interested in our one-year MS program are considered throughout the Spring Semester. Please forward this message (and the attached brochure) along to any students that you think might be interested in our graduate program. Requests for more information and questions about the graduate programs or about the Department of Scientific Computing should be addressed to the Graduate Coordinator Dr. Sachin Shanbhag at sshanbhag(a)fsu.edu or to the Chair Gordon Erlebacher (Chair) at gerlebacher(a)fsu.edu. Thank you! Regards, Gordon /Erlebacher ------------- Gordon Erlebacher Chair, Department of Scientific Computing Florida State University https://sc.fsu.edu -- Gordon Erlebacher Chair, Department of Scientific Computing

Dec. 31, 2017

BioSystems - Special Issue on Neural Coding 2016 (Vol. 161, November 2017)

by Lubomir Kostal

Dear Colleagues, We would like to announce a BioSystems Special Issue on Neural Coding: BioSystems -- Volume 161 - November 2017 Available online for download now from: https://www.sciencedirect.com/science/journal/03032647/161/supp/C?sdc=1 The Table of Contents of this special issue can be seen at the end of this email. Best wishes for a happy new year, Guest Editors Chris Christodoulou, Lubomir Kostal and Angar Büschges ------------------------------------------------------------------------------------------ ------------------ BioSystems - Contents -- Volume 161 - November 2017 Special Issue: Neural Coding 2016 (Selected papers presented at the Twelventh International Workshop on Neural Coding, Cologne, Germany, 2016) Available online for download now from: https://www.sciencedirect.com/science/journal/03032647/161/supp/C?sdc=1 Editorial Chris Christodoulou, Lubomir Kostal and Angar Büschges To swim or not to swim: A population-level model of Xenopus tadpole decision making and locomotor behaviour Roman Borisyuk, Robert Merrison-Hort, Steve R. Soffe, Stella Koutsikou, Wen-Chang Li Linked Gauss-Diffusion processes for modeling a finite-size neuronal network M. F. Carfora, E. Pirozzi Information reduction in a reverberatory neuronal network through convergence to complex oscillatory firing patterns A. Vidybida, O. Shchur Efficiency of rate and latency coding with respect to metabolic cost and time Marie Levakova A single spike deteriorates synaptic conductance estimation Ryota Kobayashi, Hiroshi Nishimaru, Hisao Nishijo, Petr Lansky Synchrony measure for a neuron driven by excitatory and inhibitory inputs and its adaptation to experimentally-recorded data Christina Zavou, Antria Kkoushi, Achilleas Koutsou, Chris Christodoulou Dynamical properties of LFPs from mice with unilateral injection of TeNT Eleonora Vannini, Matteo Caleo, Santi Chillemi, Angelo Di Garbo Functional data analysis of single-trial auditory evoked potentials recorded in the awake rat Ondřej Pokora, Jan Koláček, Tzai-Wen Chiu, Wei Qiu Upozorneni: Neni-li v teto zprave vyslovne uvedeno jinak, ma tato E-mailova zprava nebo jeji prilohy pouze informativni charakter. Tato zprava ani jeji prilohy v zadnem ohledu ustavy AV CR, v.v.i. k nicemu nezavazuji. Text teto zpravy nebo jejich priloh neni navrhem na uzavreni smlouvy, ani prijetim pripadneho navrhu na uzavreni smlouvy, ani jinym pravnim jednanim smerujicim k uzavreni jakekoliv smlouvy a nezaklada predsmluvni odpovednost ustavu AV CR, v.v.i. Disclaimer: If not expressly stated otherwise, this e-mail message (including any attached files) is intended purely for informational purposes and does not represent a binding agreement on the part of Institutes of CAS. The text of this message and its attachments cannot be considered as a proposal to conclude a contract, neither the acceptance of a proposal to conclude a contract, nor any other legal act leading to concluding any contract; nor does it create any pre-contractual liability on the part of Institutes of CAS.

Dec. 31, 2017

Postdoctoral position in quantitative biological modeling

by William L. Kath

We are looking to fill a postdoctoral position in our department through an NSF-funded Research Training Program in Quantitative Biological Modeling. Could you please be so kind as to pass this information along to anyone who would be interested or might know of suitable candidates? Note that NSF requires postdoctoral fellows to be U.S. citizens or permanent residents. More details about the positions and the program are listed below. I've also linked a flyer suitable for printing and posting at http://people.esam.northwestern.edu/~kath/rtg_advertisement_2018.pdf Best regards, - Bill Kath ------------------------------------------------- Postdoctoral Fellowships in Quantitative Biological Modeling Department of Applied Mathematics, Northwestern University Overview: The Department of Engineering Sciences and Applied Mathematics is soliciting applications for a postdoctoral fellowship in quantitative biological modeling that will be available starting September 1, 2018. This position is part of a National Science Foundation Research Training Grant (NSF-RTG). Duties: The postdoctoral fellow will conduct research on the quantitative modeling of biological systems and will teach three quarter courses per year in the department. The position will typically be for three years. The postdoctoral fellow will additionally participate in RTG-related training and career development activities. Environment: The postdoctoral fellow will be part of an interdisciplinary environment focusing on current problems in experimental and computational biology. The fellow will gain experience from training in mathematical modeling, numerical methods, and modern data analysis/statistical tools relevant to biological problems. Research internships outside of Northwestern will broaden the fellow's perspectives. The fellow's research will be mentored by faculty from both applied mathematics and a biological discipline. Ongoing collaborations exist with faculty in Neurobiology, Molecular Biosciences, Environmental Engineering and Preventive Medicine, and additional areas of interest are welcome. An overall goal of the program is to broaden computational biological modeling in the department and at Northwestern. Requirements: Applicants must be U.S. citizens or permanent residents. Interested candidates should submit a curriculum vitae, three reference letters (one addressing teaching qualifications) and brief research and teaching statements online at the URL: https://openposition.mccormick.northwestern.edu/apply/index/NjY= If desired, one or two representative publications may also be submitted. For full consideration applications should be received by January 15, 2018. Northwestern University is an Equal Opportunity, Affirmative Action Employer of all protected classes including veterans and individuals with disabilities. Women and minorities are encouraged to apply. Inquiries about the position may be directed to: Hermann Riecke Engineering Sciences and Applied Mathematics Northwestern University 2145 Sheridan Road Evanston, IL 60208-3125 Phone: (847) 491-3345 Email:h-riecke@northwestern.edu http://www.mccormick.northwestern.edu/applied-math/ -- William L. Kath, Professor Engineering Sciences and Applied Mathematics McCormick School of Engineering, Northwestern University 2145 Sheridan Road, Evanston, IL 60208-3125 Phone: 847-491-8784 Fax: 847-491-2178

Dec. 30, 2017

Direct PhD Track - Brain Sciences: Computational and Information Processing

by Nili Vershov

*Direct PhD Track* *Brain Sciences: Computation and Information Processing* Now Accepting Applications from International Students! *Submission Deadline: February 1st, 2018* *For more information:* https://elsc.huji.ac.il/phd-program-computational-neuroscience -- *Nili Vershov* *Ph.D Program C**oordinator * *Edmond and Lily Safra Center for Brain Sciences* *The Hebrew University of Jerusalem* *Tel: +972-26584899 <+972%202-658-4899>* *Cell: +972-507858847 <+972%2050-785-8847>* ------------------------------ This message contains information which may be confidential and privileged. Unless you are the intended addressee (or authorized to receive for the intended addressee), you may not use, copy or disclose to anyone the message or any information contained in the message. If you have received the message in error, please advise the sender by reply and delete the message . To the extent contractual confidentiality obligations exist, this message and all information transmitted with it are designated "Confidential".

Dec. 27, 2017

Call for papers & tutorials: PRNI (Pattern Recognition in Neuroimaging) 2018

by Yuvaraj Rajamanickam (Dr)

******* please accept our apologies for cross-posting ******* -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- FIRST CALL FOR PAPERS AND TUTORIALS PRNI 2018: 8th International Workshop on Pattern Recognition in Neuroimaging to be held 12-14 June 2018 at the National University of Singapore, Singapore www.prni.org<https://webmail.ntu.edu.sg/owa/redir.aspx?C=zAsK2tVRfU-VqajW2fbnHXBsaTVlUtU…> - @PRNIworkshop - www.facebook.com/PRNIworkshop/<https://webmail.ntu.edu.sg/owa/redir.aspx?C=zAsK2tVRfU-VqajW2fbnHXBsaTVlUtU…> ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- The 8th International Workshop on Pattern Recognition in Neuroimaging (PRNI) will be held at the Centre for Life Sciences Auditorium, National University of Singapore, Singapore on June 12-14, 2018.Pattern recognition techniques are an important tool for neuroimaging data analysis. These techniques are helping to elucidate normal and abnormal brain function, cognition and perception, anatomical and functional brain architecture, biomarkers for diagnosis and personalized medicine, and as a scientific tool to decipher neural mechanisms underlying human cognition. The International Workshop on Pattern Recognition in Neuroimaging (PRNI) aims to: (1) foster dialogue between developers and users of cutting-edge analysis techniques in order to find matches between analysis techniques and neuroscientific questions; (2) showcase recent methodological advances in pattern recognition algorithms for neuroimaging analysis; and (3) identify challenging neuroscientific questions in need of new analysis approaches. Authors should prepare full papers with a maximum length of 4 pages (two column IEEE style) for double-blind review. The manuscript submission deadline is 04 April 2018, 11:59 pm SGT. Accepted manuscripts will be assigned either to an oral or poster sessions; all accepted manuscripts will be included in the workshop proceedings. Similarly to previous years, in addition to full length papers PRNI will also accept short abstracts (500 words excluding the title, abstract, tables, figure and data legends, and references) for poster presentation. Finally, this year PRNI has an open call for tutorial proposals. A tutorial can take a form of 2h, 4h or whole day event aimed at demonstrating a computational technique, software tool, or specific concept. Tutorial proposals featuring hands on demonstrations and promoting diversity (e.g. gender, background, institution) will be preferred. PRNI will cover conference registration fees for up to two tutors per accepted program. The submission deadline is also 04 April 2018, 11:59 pm SGT. Please see www.prni.org<https://webmail.ntu.edu.sg/owa/redir.aspx?C=zAsK2tVRfU-VqajW2fbnHXBsaTVlUtU…> and follow @PRNIworkshop and www.facebook.com/PRNIworkshop/<https://webmail.ntu.edu.sg/owa/redir.aspx?C=zAsK2tVRfU-VqajW2fbnHXBsaTVlUtU…> for news and details. ________________________________ CONFIDENTIALITY: This email is intended solely for the person(s) named and may be confidential and/or privileged. If you are not the intended recipient, please delete it, notify us and do not copy, use, or disclose its contents. Towards a sustainable earth: Print only when necessary. Thank you.

Dec. 27, 2017

Columbia Workshop on Brain Circuits, Memory and Computation 2018

by Aurel A. Lazar

Columbia Workshop on Brain Circuits, Memory and Computation 2018 <http://www.bionet.ee.columbia.edu/workshops/bcmc/2018> BCMC 2018 March 15-16, 2018 Center for Neural Engineering and Computation <http://cnec.columbia.edu/> Columbia University, New York, NY, USA Overview The goal of the workshop is to bring together researchers interested in developing executable models of neural computation/processing of the brain of model organisms. Of interest are models of computation that consist of elementary units of processing using brain circuits and memory elements. Elementary units of computation/processing include population encoding/decoding circuits with biophysically-grounded neuron models, non-linear dendritic processors for motion detection/direction selectivity, spike processing and pattern recognition neural circuits, movement control and decision-making circuits, etc. Memory units include models of spatio-temporal memory circuits, circuit models for memory access and storage, etc. A major aim of the workshop is to explore the integration of various sensory and control circuits in higher brain centers. A Fruit Fly Brain Hackathon <http://www.bionet.ee.columbia.edu/hackathons/ffbh/2018> is being conducted in conjunction with the workshop. Workshop participants are welcome to attend the hackathon. Registration Registration is free but all participants have to register <https://bcmc2018.eventbrite.com/>. Thank you! Organizer and Program Chair Aurel A. Lazar <http://www.ee.columbia.edu/~aurel>, Department of Electrical Engineering, Columbia University. Program Overview (Confirmed Speakers) Misha B. Ahrens <https://www.janelia.org/lab/ahrens-lab>, Janelia Research Campus, Ashburn, VA. Davi Bock <https://www.janelia.org/lab/bock-lab>, Janelia Research Campus, Ashburn, VA. Claude Desplan <https://wp.nyu.edu/desplanlab/>, Department of Biology, New York University. Mark A. Frye <http://www.fryelab.net/>, Department of Integrative Biology and Physiology, University of California, Los Angeles. C. Giovanni Galizia <http://neuro.uni-konstanz.de/03team/content/galizia.html>, Department of Biology, University of Konstanz. Maria N. Geffen <https://geffenlab.weebly.com/maria.html>, Department of Otorhinolaryngology and Department of Neuroscience, University of Pennsylvania. Hokto Kazama <http://kazama.brain.riken.jp/index.php>, Riken Brain Science Institute, Tokyo. Donggen Luo <http://mgv.pku.edu.cn/?co=posts&ac=faculty&catalog=enpiintro&pname=en_Dongg…>, McGovern Institute for Brain Research, Peking University, Beijing. Thomas Nowotny <http://www.sussex.ac.uk/profiles/206151>, Department of Informatics, University of Sussex. Pavan Ramdya <https://ramdya-lab.epfl.ch/home>, Brain Mind Institute, EPFL, Lausanne. Aravinthan D.T. Samuel <https://scholar.harvard.edu/aravisamuel/home>, Department of Physics and center for Brain Science, Harvard University. Simon G. Sprecher <http://www.sprecherlab.com/simon-sprecher/>, Department of Biology, University of Fribourg. Seth Tomchik <http://www.scripps.edu/tomchik/>, The Scripps Research Institute Florida. Joshua T. Vogelstein <http://jovo.me/>, Dept. of Biomedical Engineering and Institute for Computational Medicine, Johns Hopkins University. Scott Waddell <https://www.dpag.ox.ac.uk/research/waddell-group>, Department of Physiology, Anatomy and Genetics, University of Oxford. Anthony M. Zador <http://zadorlab.cshl.edu/>, Cold Spring Harbor Laboratory. Aurel http://www.bionet.ee.columbia.edu

Dec. 26, 2017