- Comp-neuro - lists.cnsorg.org

research fellow: open and reproducible science core facility

by Jochem Rieger

We have an open research fellow position (salary at post-doctoral level) for 3+2 years at the Neuroimaging Unit of Uni Oldenburg for the development of tools and infrastructure for open data data and reproducible science based on the BIDS standard. The position complemented by a full time technician position for support. The announcement is below. Please contact me if you have questions. The application deadline is March 12th We are looking forward to applications, Jochem *Scientific Research Associate m/f/d* *(Salary level E13 TVL, 100%)* ** for the development of acquisition, storage and processing pipelines for open and reproducible science building on the BIDS standard. In a newly funded project we aim to implement data storage and processing pipelines for open and reproducible science based on the BIDS standard. The successful candidate is expected to actively contribute to the implementation of neuroscience data acquisition, storage, and reproducible analysis pipelines building on the BIDS standard at the University of Oldenburg, to contribute to community efforts and dissemination. Candidates are expected to have an academic university degree (Master or equivalent) in the field of informatics, engineering, neuroscience or psychology and have shown their ability to perform excellent scientific work, e.g. demonstrated by an excellent publication record. Prior experience with the BIDS standard as well as its programming, experience with neuroimaging techniques and data analysis (especially fMRI or MEG/EEG) and fluency in English is required. Experience with open science tools and databases, other neurophysiological modalities, as well as knowlegde of German are desirable. The position is embedded in a DFG Core Facility grant and is availableas soon as possibleuntil30^th of September^.2023 (with the possibility to extend another two years after successful project evaluation). The position is suitable for part-time work. The Neuroimaging Unit hosts a state of the art MEG (Elekta Triux) and an MRI (Siemens Prisma 3T) and is embedded in an excellent interdisciplinary scientific environment with a strong research focus on neurosensory, neurocognitive, and medical research. The University of Oldenburg is dedicated to increase the percentage of female employees in the field of science. Therefore, female candidates are strongly encouraged to apply. In accordance to § 21 Section 3 NHG, female candidates with equal qualifications will be preferentially considered. Applicants with disabilities will be given preference in case of equal qualification. Please send your application including a cover letter, CV, list of potential referees, links to recent publications and copies of certificates for academic grades to Prof. Jochem Rieger, Department of Psychology, University of Oldenburg, 26111 Oldenburg, Germany (jochem.rieger(a)uol.de <mailto:jochem.rieger@uol.de>). Electronic applications (*one*pdf file) are preferred. For inquiries please use the same contact. The application deadline is*12^th of**March 2021*. -- Prof. Dr. rer. nat. Jochem Rieger Head of Applied Neurocognitive Psychology head of Neuroimaging Unit Faculty VI Carl-von-Ossietzky University 26111 Oldenburg Germany Phone: +49(0)4417984533 Fax: +49(0)4417983865

March 4, 2021

Announcing 3 NeuroML hackathon sessions at HARMONY 2021

by Padraig Gleeson

*[Apologies for cross-posting]* ** ** *We will be running 3 online NeuroML <https://neuroml.org/> hackathon sessions during the upcoming HARMONY 2021 <http://co.mbine.org/events/HARMONY_2021>meeting on 23-25th March. * ** ** *The general theme of the sessions will be: Learn to build, visualise, analyse and simulate your models using NeuroML.* * Why take part? These hackathons will give members of the modelling community the chance to: * Get high level introductions to the NeuroML language and toolchain * Meet the NeuroML core development team and editors * Find out the latest information on which simulators/applications support NeuroML * Open, discuss and work on issues related to converting your model to NeuroML, or supporting NeuroML in your simulator * Learn how to share your models with the community Times and dates All sessions will be online and take place over 3 hours (9am-noon Pacific; 12-3pm EST time; 4-7pm UK/UTC; 5-8pm CET, 9:30pm-12:30am IST; note non-standard US/EU time differences that week). The broad focus of each of the sessions (dependent on interests of attendees) is: **Tues 23rd March: Introduction to NeuroML, general questions about usage **Wed 24th March: Detailed cell/conductance based models (e.g. converting channels to NeuroML) **Thus 25th March: Abstract/point neuron networks including PyNN interactions Registration To take part in the hackathon, please register at http://co.mbine.org/events/HARMONY_2021 <http://co.mbine.org/events/HARMONY_2021>for the HARMONY meeting (registration is free). You will get sent details to access the agenda on https://harmony2021.sched.com, which will have links to the Zoom sessions for each of the days. Open an issue beforehand! While it will be possible to raise and discuss new issues at the hackathons, it will be easier to manage and plan work/discussions if you open an issue with a description of the problem you are trying to address at: https://github.com/NeuroML/NeuroML2/issues <https://github.com/NeuroML/NeuroML2/issues>. Slack To aid communication with the community during (and after) the meeting, we have a Slack channel for NeuroML related discussions. Please reply to this mail for an invite. We look forward to working with the community to drive further uptake of NeuroML compliant models and tools! * ----------------------------------------------------- Padraig Gleeson Room 321, Anatomy Building Department of Neuroscience, Physiology& Pharmacology University College London Gower Street London WC1E 6BT United Kingdom +44 207 679 3214 p.gleeson(a)ucl.ac.uk -----------------------------------------------------

March 3, 2021

Two postdoctoral fellow positions in theoretical neuroscience

by Yoram Burak

The Burak Lab at the Hebrew University and the Moser lab at the Kavli Institute for Systems Neuroscience (KISN) are seeking two postdoctoral fellows in theoretical neuroscience, to take part in a joint ERC-funded project. The project aims to identify how thousands of neurons in the mammalian cortex interact with each other to achieve computational and cognitive functions. Theory fellows taking part in the project will work on diverse theoretical and computational questions, which involve approaches ranging from pure theoretical modelling to analysis and interpretation of large scale neural data. Computational tools involve methods from nonlinear dynamics, machine learning, statistical physics, and information theory. The two theory postdoctoral fellows will be based in Jerusalem, and are expected to interact closely with members of both labs, both remotely and during visits to the KISN in Trondheim. A generous budget will be available for travel between Israel and Norway, for travel and participation in scientific meetings, and for purchase of computing equipment. We are looking for candidates with excellent demonstrated abilities in theoretical research, strong intellectual curiosity and drive, a keen interest in computational neuroscience, and an interest in relating theory to experimental data. A strong research record in theoretical neuroscience, theoretical physics, mathematics, computer science, or a related field is required. Experience with research related to machine learning, statistical physics, nonlinear dynamics, information theory, or large-scale data analysis, as well as prior familiarity with research in computational neuroscience are advantageous. *To apply:* Please send the following information to kiloneurons-positions(a)elsc.huji.ac.il in a single PDF file: 1. Curriculum vitae 2. List of publications 3. Brief statement of research interests 4. The names and contact details of three references *Deadline*: For full consideration, applications must be received by March 31, 2021. After this date, if positions are not filled, applications will be considered on a rolling basis. ___ Yoram Burak Associate Professor Racah Institute of Physics, and Edmond and Lily Safra Center for Brain Sciences The Hebrew University of Jerusalem p: +972-2-6584523 w: https://www.buraklab.me/ a: Goodman Brain Sciences Bldg 2102, Safra Campus, Jerusalem 91904, Israel

March 3, 2021

IMRF (International Multisensory Research Forum) postponed to July 04-07 2022 in Ulm, Germany

by Marc Ernst

Dear participants of the IMRF, Unfortunately, the COVID-19 pandemic situation is still affecting all our lives and the prediction for summer 2021 does not look like it will allow all of us travelling internationally without restrictions or holding a meeting in closed spaces with many people present. As many other conferences, we also considered moving to an online format for the International Multisensory Research Forum (IMRF) (https://cops.ifp.uni-ulm.de/imrf2020/ <https://cops.ifp.uni-ulm.de/imrf2020/>). However, we feel the community would not benefit as much as having a meeting in person. Therefore, with a heavy heart we decided once again (and hopefully for the last time) to postpone the „annual“ IMRF meeting. The new dates are July 04-07, 2022. Abstract submission and registration will stay open. All abstracts already submitted will be further considered. However, you can of course log on and adapt your abstracts (or symposia) until the new deadline for abstract submission. We will announce the new deadlines in due time. The abstract submission and registration page can be found here <https://cops.ifp.uni-ulm.de/imrf2020/index.php/imrf-2020/registration-submi…>. Also registrations will stay valid in case you already registered. Otherwise new registration dates will be announced shortly. Sorry for the inconvenience this third postponement may cause and thanks for your understanding. Be safe and stay healthy!!!! Best, Mac Ernst on behalf of the IMRF Organizers. --------------------------------------------------------- Prof. Dr. Marc Ernst Appl. Cognitive Psychology Faculty for Computer Science, Engineering, and Psychology Ulm University Albert-Einstein-Allee 43 89081 Ulm room: 43.3.103 phone: +49-731-50 320 50 sekr: +49-731-50 320 51 fax: +49-731-50 320 59 mobile: +49-152-22 543 156 marc.ernst(a)uni-ulm.de <mailto:marc.ernst@uni-ulm.de>

March 3, 2021

PhD in ML and AI - VC Scholarships

by Konstantin Nikolic

The Vice-Chancellor Scholarships for one or more PhD positions in Machine Leaning is available in the “Bio-Inspired Modelling and Technology” group of Prof Konstantin Nikolic at University of West London, UK. The group’s interests are mostly in modelling biological systems and AI/ML related to bio-inspired themes. Potential project topics include: Learning in Spiking Neural Networks (SNNs), Neuromorphic robots controlled by SNNs (available are SpiNNaker boards, Dynamic Vision Sensors, etc, for example see: https://www.youtube.com/watch?v=135fH21QXtg) Data-driven ML algorithms based on information theory and their applications (such as medical diagnostics, video/image analysis, financial/economic or some other large dataset analysis), Neural microcircuits of learning and cognitive modelling, etc. We are also interested in developing ML algorithms for controlling neuromodulatory implants. Research related to Theoretical and Computational neuroscience could be also interesting, especially if exploring some new ideas related to learning in relatively simple biological systems. The researchers will be based in the School of Computing and Engineering at University of West London, with close collaboration with the Centre for Bio-Inspired Technology at Institute of Biomedical Engineering, Imperial College London. The School enjoys state-of-the-art facilities and infrastructure and continues to invest heavily in its improvement. The life on campus is enriched with high-quality live performances and plays given by the students from our London College of Music and London School of Film, Media and Design, the two hubs of talent and creativity. If interested, please send your CV with a brief description of your research interests or a potential project directly to me: konstantin.nikolic(a)uwl.ac.uk<mailto:konstantin.nikolic@uwl.ac.uk>. All applicants will eventually have to formally apply through the standard UWL mechanism. Applications will be considered as they arrive, but earlier applications typically have a higher chance of getting a funded place, and EU applicants in particular should apply immediately. The next PhD cohort at UWL starts in May 2021. Konstantin Nikolic, PhD Professor in Computer Science – AI, ML and Data | University of West London Visiting Professor | Imperial College London University of West London School of Computing and Engineering| Room BY.03.019|St Mary’s Road | London W5 5RF|UK email: konstantin.nikolic(a)uwl.ac.uk<mailto:konstantin.nikolic@uwl.ac.uk> , k.nikolic(a)imperial.ac.uk<mailto:k.nikolic@imperial.ac.uk> web: https://www.uwl.ac.uk/users/konstantin-nikolic; https://www.imperial.ac.uk/people/k.nikolic

March 2, 2021

Job Opening in Juelich, Germany: Postdoc in Computational Neuroscience - Priority Program 2041Computational Connectomics

by Martina Reske

The Institute of Neuroscience and Medicine (INM) at the Jülich Research Center in Germany investigates the structure and function of the brain. The subinstitute INM-6 consists of 6 groups that conduct research in the field of computational and systems neuroscience. The Priority Program "Computational Connectomics" is a Germany-wide collaboration aiming at comprehensive descriptions of neuronal network connectivity and insight into its relationships to brain dynamics and function. The candidate will strengthen our team in the project “Cellular, connectional and molecular heterogeneity in a large-scale computational model of the human cerebral cortex”, which is embedded in the context of the Priority Program. It will be supervised by Prof. Sacha van Albada and is a collaboration with Dr. Alexandros Goulas (UKE Hamburg) and Dr. Timo Dickscheid (INM-1, Jülich Research Center). This collaboration links cytoarchitecture (Dr. Dickscheid) to connectomics (Dr. Goulas) and finally cortical network dynamics (Prof. van Albada). Simulations using the neural network simulation tool NEST on the Jülich supercomputers provide the unique opportunity for investigating spiking cortical models at the full density of neurons and synapses. We are looking to recruit a Postdoc in Computational Neuroscience - Priority Program 2041 Computational Connectomics Your Job: * Extending and refining a large-scale spiking neural network model of human cerebral cortex * Investigating the origins of area- and layer-specific cortical timescales and oscillations * Supervising PhD and Master students * Maintaining active collaborations with project partners * Writing, documenting, and publishing high-quality simulation, analysis, and visualization scripts * Presenting project results at national and international conferences * Publishing project results in peer-reviewed international journals Your Profile: * Completed study (Master) in natural sciences, computer science or mathematics * PhD in computational neuroscience * Extensive experience with neural network simulations and analytical mean-field theory * Excellent knowledge of cortical anatomy and physiology * Structured and organized style of working * Fluent in English, spoken and written * Ability to work independently * Good social and student supervision skills * Willingness to travel Our Offer: We work on the very latest issues that impact our society and are offering you the chance to actively help in shaping the change! We support you in your work with: * Comprehensive training courses and individual opportunities for personal and professional further development * Extensive company health management * Ideal conditions for balancing work and private life, as well as a family-friendly corporate policy * Full-time position with the option of slightly reduced working hours and 30 days of annual leave * Targeted services for international employees, e.g. through our International Advisory Service We offer you an exciting and varied role in an international and interdisciplinary working environment. The position is initially for a fixed term of 1 year, with possible long-term prospects. Salary and social benefits in conformity with the provisions of the Collective Agreement for the Civil Service (TVöD). Depending on the applicant`s qualifications and the precise nature of the tasks, salary grade 13 TVöD-Bund. Forschungszentrum Jülich promotes equal opportunities and diversity in its employment relations. We also welcome applications from disabled persons. Please apply via our online recruiting system<https://www.hrecruiting.de/obf2/bewerbermanagement.php?kunden_nr=t5ChjatkIf…>, quoting the reference number 2021-091. Martina Reske -- Dr. Martina Reske Scientific Coordinator Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience Jülich Research Centre and JARA Jülich, Germany Work +49.2461.611916 Work Cell +49.151.26156918 Fax +49.2461.619460 www.csn.fz-juelich.de<http://www.csn.fz-juelich.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

March 2, 2021

[job] Postdoctoral Researcher on fMRI study of spontaneous thoughts and natural task

by Mingbo Cai

Postdoctoral Researcher on fMRI study of spontaneous thoughts and natural tasks We seek a talented neuroscientist with extensive experience in the areas of advanced fMRI analysis, (such as encoding or decoding models) and the design of experiments using naturalistic tasks and assessing spontaneous thoughts. A 3-year postdoctoral position is available at Dr. Mingbo Cai’s lab at the International Research Center for Neurointelligence, The University of Tokyo. You will work on an exciting international collaboration project co-funded by AMED of Japan and DFG of Germany directed by both Dr. Cai <https://cailab-ircn.org/> and Dr. Nicolas Schuck <https://schucklab.gitlab.io/> at Max Planck Institute for Human Development. You will also have the opportunity to collaborate remotely with Dr. Quentin Huys <https://quentinhuys.com/> at the University College London. The project will focus on understanding the contents and dynamics of spontaneous thoughts using fMRI decoding and natural tasks. In the later stage of the project, we also plan to examine the clinical implication of differences in spontaneous thoughts. Applicants with experience working on populations with mental disorders are also highly encouraged to apply. The working language is English. The working location is at The University of Tokyo, Japan. Contract duration: renewed annually up for 3 years, with a probation period of 6 months. Starting date: On or after April 1, 2021. *Requirements* (1) Applicants must hold, or be expected to hold by the time of appointment, a PhD, M.D. or equivalent degree in Neuroscience, Psychology, Psychiatry, Machine Learning, Statistics or related fields. (2) Experience in conducting fMRI experiments and data analysis (evidenced by publications, conference presentations or writing samples). (3) Familiar with at least one of the following tools: AFNI, FSL, nilearn, BrainIAK. (4) Good speaking and scientific writing skills in English. (5) Good programming skills. (6) Willing to collaborate and help colleagues. Requirements 2 and 3 may be replaced by two or three of the preferred skills below: *Preferred skills:* (1) Research experience with fMRI experiments involving natural tasks and multivariate pattern analysis. (2) Experience with experiments investigating spontaneous thoughts. (3) Research experience with investigations of psychiatric disorders. (4) Knowledge of and experience with deep learning. *Application procedure:* Please send an email with title “[Postdoc Application] + your name” to mingbo.cai(a)ircn.jp. Please include a cover letter describing your background and research interest, a curriculum vitae, and contact information for 2-3 recommendation letters (ideally you can also request your referees to send their letters directly to the above email address). To increase the chance of being considered, we suggest you include writing samples or a copy of a poster. Informal inquiry can also be sent to Dr. Cai. *Application deadline:* The first deadline is March 31. The position will remain open until filled. We encourage early application as the review can start before the deadline. Mingbo Cai Principal Investigator International Research Center for Neurointelligence The University of Tokyo https://cailab-ircn.org/ Mingbo Cai

March 2, 2021

WorldWideNeuRise online seminar series on inter-areal communication

by William Podlaski

WorldWideNeuRise is an online seminar series affiliated with WorldWideNeuro and eLife which aims to give early career researchers a chance to share their work. We will have several talks throughout March-April on the topic of inter-areal communication from the following speakers: Wednesday, 3 March, 5pm CET Arseny Finkelstein (Svododa lab, Janelia HHMI) Wednesday, 10 March, 5pm CET Aleena Garner (Keller lab, Friedrich Miescher Institute) Kelly Clancy (Mrsic-Flogel lab, University College London) Wednesday, 24 March, 5pm CET Matthew Perich (Rajan lab, Mount Sinai) Evren Gokcen (Yu lab, Carnegie Mellon University) Wednesday, 7 April, 5pm CET Monique Smith (Malenka lab, Stanford University) Adi Kol (Goshen lab, Hebrew University of Jerusalem) Wednesday, 21 April, 5pm CET David Tingley (Buzsáki lab, New York University) Javad Karimi Abadchi (Mohajerani & McNaughton labs, University of Lethbridge) For more information, please visit our website (https://neurise.github.io/) find us on WorldWideNeuro (https://www.world-wide.org/Neuro/WWNeuRise/) or follow us on Twitter (https://twitter.com/WWNeuRise) We are looking forward to seeing you there! The organising committee, Ellen Boven (Apps lab, U Bristol) Christina Buetfering (Häusser lab, U College London) Lucie Descamps (Kentros lab, NTNU) Gily Ginosar (Ulanovsky lab, Weizmann Institute) Loreen Hertäg (Sprekeler lab, TU Berlin) Joram Keijser (Sprekeler lab, TU Berlin) Bill Podlaski (Machens lab, Champalimaud)

March 1, 2021

Registration open for the second Canadian Computational Neuroscience Spotlight (CCNSv2)

by Scott Rich

Dear Comp-Neuro Mailing List, Last year, the Canadian Computational Neuroscience Spotlight <https://www.crowdcast.io/e/CCNS/register> (CCNS) was one of the first neuroscience conferences to successfully transition into the virtual space <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008…> due to the COVID-19 pandemic, with more than 450 registrants from across the globe. Given the overwhelmingly positive feedback we received from this first meeting, we are excited to announce a “v2” of the conference will take place this coming May 17-18, and registration is now open <https://www.crowdcast.io/e/ccnsv2/register>. We are hoping that you will not only register for the meeting, but advertise it via email listservs, social media, and any other avenues you deem appropriate. CCNSv2 will feature four sessions chaired by internationally recognized computational neuroscientists on topics that bridge the multiple scales at which neuroscience research, both computationally and experimentally, is performed. Three of our four chairs are currently confirmed: *Dr. Etay Hay* of the Krembil Centre for Neuroinformatics, *Dr. Maurizio de Pitta *of the Basque Center for Applied Mathematics, and *Dr. Bratislav Misic* of McGill University. As CCNS was designed as a “trainee focused” meeting, each session will begin with a tutorial talk in which a topic of importance will be introduced for a broad audience. We also will host two panel discussions, one with experienced computational neuroscience researchers and the other with ECRs and current trainees, to provide a forum for trainees to ask questions of scientists at various stages of their careers. We invite all trainees to submit an abstract <https://docs.google.com/forms/d/e/1FAIpQLSdCRPkDuPdoS3M7PISDITXfB__rWDiFEi9…> to give a “trainee talk” at the meeting. We anticipate accepting all applications that reasonably fall under the broad banner of computational neuroscience unless the demand far exceeds our expectations. We will also provide an additional spotlight to four talks that are both the most meritorious and best fit with the focused themes of the meeting. Please do not hesitate to contact us if you have any further questions regarding this meeting or manners of advertising it. We look forward to seeing you at CCNSv2! Sincerely, The CCNS Organizing Committee Scott Rich <http://scottrich.strikingly.com/>, Ph.D.: Postdoctoral Research Fellow, Krembil Research Institute Andreea Diaconescu <https://cognemo.com/>, Ph.D.: Independent Scientist, Krembil Center for Neuroinformatics at CAMH John Griffiths <https://t.co/AlUQymEUae?amp=1>, Ph.D.: Independent Scientist, Krembil Center for Neuroinformatics at CAMH Milad Lankarany <https://sites.google.com/view/lnsbsp/home>, Ph.D.: Scientist, Krembil Research Institute

March 1, 2021

Computational Brain Reimagined

by Aurel A. Lazar

In recent years, the growing wealth of Drosophila neuroscience data have become available including cell type and connectome/synaptome datasets for both the larva and adult fly. To facilitate integration across data modalities and to accelerate the understanding of the functional logic of the fruit fly brain, we have developed FlyBrainLab, a unique open-source computing platform that integrates 3D exploration and visualization of diverse datasets with interactive exploration of the functional logic of modeled executable brain circuits. For a brief description, see the eLIFE paper: "Accelerating with FlyBrainLab the Discovery of the Functional Logic of the Drosophila Brain in the Connectomic Era”, February 2021, https://elifesciences.org/articles/62362 Further details are available on the Fruit Fly Brain Observatory website at https://www.fruitflybrain.org/#/ <https://www.fruitflybrain.org/#/> Here you will find guides to a wealth of fruit fly brain datasets and libraries to interactively explore circuit models. Check out "Exploring the Fruit Fly Brain Observatory” at https://www.fruitflybrain.org/#/posts/explore_ffbo <https://www.fruitflybrain.org/#/posts/explore_ffbo> and the links to open source code posted on Github: https://www.fruitflybrain.org/#/posts/resources <https://www.fruitflybrain.org/#/posts/resources> Best, Aurel http://www.bionet.ee.columbia.edu

March 1, 2021