- Comp-neuro - lists.cnsorg.org

Postdoc position at UTSA

by Fidel Santamaria

As part of a collaboration with the AFRL, the laboratory of Dr Santamaria at UTSA is looking for a talented postdoc to computationally study how fast thermal gradients impact synaptic mechanisms in dendritic spines. This will be part of a collaborative project between UTSA, AFRL, and other universities where experiments and simulations will combine to understand fundamental plasticity processes in neuronal synapses. The results will have important practical implications in neuroscience and biomedical engineering. The selected person will work on developing deterministic and stochastic models of how biochemical signals, involved in synaptic plasticity, are affected by thermal gradients. Interested individuals should send a CV and cover letter to Dr. Santamaria (fidel.santamaria(a)utsa.edu) The position is for one year, with the possibility of renewal. This position is only open to American citizens. Applicants must have experience with Python or Matlab and a background in physics or engineering is preferred. _______________________________________________________________________________ Fidel Santamaria, PhD Professor Department of Neuroscience, Development, and Regenerative Biology University of Texas at San Antonio www.utsa.edu/SantamariaLab<http://www.utsa.edu/SantamariaLab> Office: BSB 1.03.30 Tel +1(210) 458 6910

Feb. 16, 2022

Special issue of SIAP on the life sciences

by Kresimir josic

SIAM Journal on Applied Mathematics (SIAP) invites contributions for a special section on the life sciences to highlight the use and development of mathematical models and analysis tools to address life sciences issues that are of true biological, medical, or industrial relevance. Papers submitted to this special section will be peer-reviewed, subject to the review criteria of SIAP. Papers will initially be handled by guest editors. The window for submissions runs from February 15 to June 30, 2022. For information about this issue please see: https://bit.ly/3LsPxcw <https://bit.ly/3LsPxcw>

Feb. 14, 2022

Third session of the Brains Through Time Reading Club

by manuel molano

Dear all, I would like to bring to your attention the third session of the Brains Through Time Reading Club<https://sites.google.com/view/bbtreadingclub/home>! It will be on February 23rd (4pm CEST / 10 EST) and will include the participation of Leonard Maler<https://www.uottawa.ca/brain/people/maler-leonard>, Idoia Quintana-Urzainqui<https://twitter.com/idoiaeu>, Luis Puelles<https://scholar.google.com/citations?user=nIoLKVAAAAAJ&hl=en> and Paul Cisek<https://cisek.org/pavel/>. We will discuss the main ideas of the third chapter of the book: The origin of jaws and paired fins. You can register HERE<https://www.crowdcast.io/e/brains-through-time-3>. And in case you missed the previous sessions, you can watch them HERE<https://www.youtube.com/channel/UCDWFS3MBL9OhmpmL6mFmxsg/featured>.

Feb. 14, 2022

Computational Neuroscience Summer school in South Africa, DEADLINE TOMORROW

by Tim Vogels

Dear all, This is a reminder that the application DEADLINE for the next IMBIZO is TOMORROW. If you, or anyone you know who would benefit from this opportunity please consider applying: IBRO-SIMONS COMPUTATIONAL NEUROSCIENCE IMBIZO #isiCNI2022 12 August - 4 September 2022, Noordhoek Beach, Cape Town, South Africa http://imbizo.africa/ <http://imbizo.africa/> Application deadline: 15th February 2022 The #isiCNI2022 is a southern hemisphere summer school aiming to promote computational neuroscience in Africa. It will bring together international and local students under the tutelage of the world's leading experts in the field. Like its international sister courses, this four-week summer school aims to teach central ideas, methods, and practices of modern computational neuroscience through a combination of lectures and hands-on project work. Mornings will be devoted to lectures on topics across the breadth of computational neuroscience, including experimental underpinnings and machine learning analogues. The rest of the day will be spent working on research projects under the close supervision of expert tutors and faculty. Individual research projects will focus on the modelling of neurons, neural systems, behaviour, the analysis of state-of-the-art neural data, and the development of theories to explain experimental observations. New this year is a week focused on neuroscience-inspired machine learning! Who should apply? This course is aimed at Masters and early-PhD level students though Honours or advanced undergraduates may also apply. Postdoctoral students who can motivate why the course would benefit them are also encouraged to apply, Students should have sufficient quantitative skills, (e.g. a background in mathematics, physics, computer science, statistics, engineering or related field). Some knowledge of neural biology will be useful but not essential. Experimental neuroscience students are encouraged to apply, but should ensure that they have a reasonable level of quantitative proficiency (i.e. at least second-year level mathematics or statistics and have done at least one course in computer programming). Please distribute this information as widely as you can. Essential details * Fee (which covers tuition, lodging, and meals): 1100 EUR Thanks to our generous sponsors, significant financial assistance is available to reduce and waiver fees for students, particularly for African applicants. We also hope to provide some travel bursaries for international students. If you are in need of financial assistance to attend the Imbizo, please state so clearly in the relevant section of your application. The Imbizo is planned to be hosted in person, with everyone following our COVID policy <https://imbizo.africa/covid-policy/>. If it is unsafe to hold the summer school, we will follow up with further information at the appropriate time. * Application deadline: 15th February 2022 * Notification of results: late April 2022 Information and application https://imbizo.africa/ <https://imbizo.africa/> Questions? isicn.imbizo(a)gmail.com <mailto:isicn.imbizo@gmail.com> What is an Imbizo? \ɪmˈbiːzɒ\ | Xhosa - Zulu A gathering of the people to share knowledge. FACULTY Demba Ba - Harvard University Adrienne Fairhall - University of Washington Peter Latham - University College London Daphne Bavelier - University of Geneva Timothy Lillicrap - DeepMind Jonathan Pillow - Princeton University Joseph Raimondo - University of Cape Town Mackenzie Mathis - EPFL Lausanne Athanassia Papoutsi - IMBB-FORTH Evan Schaffer - Columbia University Henning Sprekeler - Technical University of Berlin Thomas Tagoe - University of Ghana Tim Vogels - Institute of Science and Technology Austria Blake Richards - McGill University Alex Pouget - University of Geneva TUTORS Mohamed Abdelhack - Krembil Centre for Neuroinformatics Annik Carson - McGill University Spiros Chavlis - IMBB-FORTH Christopher Currin - Institute of Science and Technology Austria Sanjukta Krishnaopal - University College London Marjorie Xie - Columbia University ORGANISERS Demba Ba (Harvard University) Christopher Currin (Institute of Science and Technology Austria) Peter Latham (Gatsby Unit for Computational Neuroscience) Joseph Raimondo (University of Cape Town) Emma Vaughan (Imbizo Logistics) Tim Vogels (Institute of Science and Technology Austria) Sponsors The isiCNI is made possible by the generous support from the Simons Foundation <https://www.simonsfoundation.org/> and the International Brain Research Organisation (IBRO) <https://ibro.org/>, as well as the Wellcome Trust <https://wellcome.org/>, Deep Mind <https://deepmind.com/> and Wits University <https://www.wits.ac.za/> Organizational Affiliates University of Cape Town, University College London, Institute of Science and Technology Austria, TReND in Africa <http://trendinafrica.org/>, Neuroscience Institute <http://www.neuroscience.uct.ac.za/>, Gatsby Foundation <http://www.gatsby.org.uk/>, IBRO African Center for Advanced Training in Neurosciences at UCT

Feb. 14, 2022

[Jobs] Available Position: Professor in Artificial Intelligence (AI) at the University of Plymouth, UK

by Amir Aly

Dear All, *Apologies for cross-posting* *The School of Engineering, Computing, and Mathematics (SECaM)*, at the University of Plymouth has a unique opportunity for an outstanding academic and their team to join the School and strengthen our research, leadership, and collaboration in *Artificial Intelligence*. This is an opportunity to establish senior academic direction and growth in this core area of Artificial Intelligence and to build on multi-disciplinary collaboration, supporting the School’s strategic objectives to create a critical mass of expertise in the area of Artificial Intelligence aligning directly with Industry 4.0 and future national and international research opportunities and skills development needs. You will work together with colleagues to create a vision for our existing Centre for Robotics and Neural Systems (CRNS), which builds on the world-leading and international excellence performance in the field of computer science, social and cognitive robotics, neural computation, and others. You will join a community of over 100 staff and 2000 students who work alongside one another in world-leading facilities. This synergistic mix of academic disciplines has research strength aligned with challenges of the fourth Industrial Revolution, clean growth, digitalization, autonomy, and health technology, helping to develop pioneering, innovative solutions to real-world problems that have a genuinely positive impact upon society. The deadline is 25th February. For more information and to apply, please visit: https://hrservices.plymouth.ac.uk/tlive_webrecruitment/wrd/run/ETREC107GF.o… <https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fhrservice…> Regards ---------------- *Dr. Amir Aly* Lecturer in Artificial Intelligence and Robotics Center for Robotics and Neural Systems (CRNS) School of Engineering, Computing, and Mathematics Room B332, Portland Square, Drake Circus, PL4 8AA University of Plymouth, UK

Feb. 12, 2022

Running your new lab: tips and tricks - Panel discussion - 10th March 2022, 12h GMT / 13h CET

by Sidarus, Nura

Running your new lab: tips and tricks 10th March 2022 12h GMT / 13h CET Online To commemorate International Women's Day, we are delighted to host this practical panel discussion to provide support and inspiration for starting and running a lab. Save the date and do not miss the opportunity to share experiences with leading women scientists in cognitive sciences across Europe. Details and registration: https://www.eventbrite.co.uk/e/running-your-new-lab-tips-and-tricks-tickets… Our panel: * Prof Nivedita Mani, Professor of Psychology of Language, Georg-August-Universität Göttingen, Germany * Dr Jessie Ricketts, Reader in Psychology, Department of Psychology, Royal Holloway, University of London, UK * Prof Agnieszka Wykowska, Professor in Social Cognition in Human-Robot Interaction, Istituto Italiano di Tecnologia (IIT), Genova, Italy Organised and facilitated by Nura Sidarus (Royal Holloway University of London) & co-facilitated by María Jesús Maraver (Universidade de Lisboa). Supported by Women in Cognitive Science - Europe (WiCS-E) & Royal Holloway University of London. __________________________________________________________ Dr Nura Sidarus (she/her) Lecturer | Department of Psychology Royal Holloway University of London | Egham | Surrey | TW20 0EX Office: Wolfson 248 | Tel: +44 (0) 1784 44 3717 Affiliate Member | Institute of Cognitive Neuroscience, UCL nura.sidarus(a)rhul.ac.uk<mailto:%20nura.sidarus@rhul.ac.uk> | www.nurasidarus.com<http://www.nurasidarus.com/> __________________________________________________________ This email, its contents and any attachments are intended solely for the addressee and may contain confidential information. In certain circumstances, it may also be subject to legal privilege. Any unauthorised use, disclosure, or copying is not permitted. If you have received this email in error, please notify us and immediately and permanently delete it. Any views or opinions expressed in personal emails are solely those of the author and do not necessarily represent those of Royal Holloway, University of London. It is your responsibility to ensure that this email and any attachments are virus free.

Feb. 11, 2022

Re: [Comp-neuro] Connectionists: crowd-sourcing COSYNE post-review score sheet

by Tim Vogels

Dear all, I shall neither confirm nor deny the validity of these results, but squinting my eyes, and not taking the various dimensions that we had to account for to make for a hopefully well-balanced conference, then yeah that looks like a very rough average of the several different thresholds we used. Once the dust settles and I’m not totally overwhelmed anymore (right!) Laura and I will sit down and write some sort of account of how things went down this year (follow us on Twitter - @visioncircuits and @tpvogels for updates on that). Thanks Laurent, for taking a first stab at this though, and keeping us on our toes. Did we get it right? Probably not in every way, and what we’ll write will be more more the next year than anything else. Do you have feedback? Please let us know, though I’d like to receive your criticism offline, if possible. It makes it much easier to digest. I hope this helps. All the best, Tim (sent from my phone) > On 11 Feb 2022, at 15:28, PERRINET Laurent <laurent.perrinet(a)univ-amu.fr> wrote: > > Dear community, > > As of today, I have received N = 82 answers from the google form (out of them, 79 are valid) out of the 881 submitted abstracts. In short, the total score is simply the linear sum of the scores relatively weighted by the confidence levels (as stated in the email we received from the chairs) and the threshold is close to 6.05 this year: > > > > More details in the notebook (or directly in this post) which can also be forked here and interactively modified on binder. > > cheers, > > Laurent > > -- > Laurent Perrinet - INT (UMR 7289) AMU/CNRS > https://laurentperrinet.github.io/ > > > > >> On 4 Feb 2022, at 09:19, PERRINET Laurent <laurent.perrinet(a)univ-amu.fr> wrote: >> >> Dear community >> >> COSYNE is a great conference which plays a pivotal role in our field. Raw numbers we were given are >> >> * 881 submitted abstracts >> * 215 independent reviewers >> * 2639 reviews >> >> If you have submitted an abstract (or several) you have recently received your scores. >> >> I am not affiliated to COSYNE - yet I would like to contribute in some way and would like to ask one minute of your time to report the raw scores from your reviewers: >> >> https://forms.gle/p7eG1p6dJAkr4Cyg7 >> >> (Do one form per abstract.) >> >> For this crowd-sourcing effort to have a most positive impact, I will share the results and summarize in a few lines them in one week time (11/02). The more numerous your feedbacks, the higher the precision of results! >> >> Thanks in advance for your action, >> Laurent >> >> >> PS: if any similar initiative already exists, I'll be more than willing to receive feedback >> >> >> -- >> Laurent Perrinet - INT (UMR 7289) AMU/CNRS >> https://laurentperrinet.github.io/

Feb. 11, 2022

Re: [Comp-neuro] crowd-sourcing COSYNE post-review score sheet

by PERRINET Laurent

Dear community, As of today, I have received N = 82 answers from the google form<https://forms.gle/hjzWVemM4Jy9cBbZ9> (out of them, 79 are valid) out of the 881 submitted abstracts. In short, the total score is simply the linear sum of the scores relatively weighted by the confidence levels (as stated in the email we received from the chairs) and the threshold is close to 6.05 this year: [2022-02-11_COSYNE-razor]<https://github.com/laurentperrinet/2022-02-11_COSYNE-scoresheet/blob/main/2…> More details in the notebook<https://github.com/laurentperrinet/2022-02-11_COSYNE-scoresheet/blob/main/2…> (or directly in this post<https://laurentperrinet.github.io/sciblog/posts/2022-02-11-cosyne-reviewer-…>) which can also be forked here<https://github.com/laurentperrinet/2022-02-11_COSYNE-scoresheet> and interactively modified on binder<https://mybinder.org/v2/gh/laurentperrinet/2022-02-11_COSYNE-scoresheet/mai…>. cheers, Laurent -- Laurent Perrinet - INT (UMR 7289) AMU/CNRS https://laurentperrinet.github.io/ On 4 Feb 2022, at 09:19, PERRINET Laurent <laurent.perrinet(a)univ-amu.fr<mailto:laurent.perrinet@univ-amu.fr>> wrote: Dear community COSYNE is a great conference which plays a pivotal role in our field. Raw numbers we were given are * 881 submitted abstracts * 215 independent reviewers * 2639 reviews If you have submitted an abstract (or several) you have recently received your scores. I am not affiliated to COSYNE - yet I would like to contribute in some way and would like to ask one minute of your time to report the raw scores from your reviewers: https://forms.gle/p7eG1p6dJAkr4Cyg7 (Do one form per abstract.) For this crowd-sourcing effort to have a most positive impact, I will share the results and summarize in a few lines them in one week time (11/02). The more numerous your feedbacks, the higher the precision of results! Thanks in advance for your action, Laurent PS: if any similar initiative already exists, I'll be more than willing to receive feedback -- Laurent Perrinet - INT (UMR 7289) AMU/CNRS https://laurentperrinet.github.io/

Feb. 11, 2022

12 Postdoctoral positions - Ruhr University Bochum

by Vinita Samarasinghe

*12 postdoctoral positions (min. 3 years) in Neuroscience, Psychology, and Philosophy of Mind*** The Ruhr University Bochum and the University of Duisburg-Essen are among Germany’s leading research universities. They draw their strength from both the diversity and the proximity of natural sciences, humanities, and engineering disciplines on coherent campuses. These highly dynamic settings enable researchers to work across traditional boundaries of academic subjects and faculties. *We are searching for advanced postdocs who ideally already have ca. 2 years of research experience*and want to continue their careers in an inspiring environment that fosters interdisciplinary approaches. We aim to install an outstanding group of postdocs, starting on 1^st of April 2022 at the earliest, who are tightly integrated with the research focus “THINK@Ruhr”. Details of this research program as well as all further procedural details are outlined on the website: _*www.thinkatruhr.de* <http://www.ThinkAtRuhr.de/>_. Deadline of application is February 27, 2022. *Applicants should have *an excellent PhD in a research topic related to neuroscience, psychology, or philosophy of mind and should already have published in high-ranking peer-reviewed journals. The postdoc positions offer a focus on research only (no teaching or administration). It is expected that the successful candidate will submit a grant proposal to establish her/his own research group (e.g. ERC Starting Grant, Emmy Noether Research Grant, Sofja Kovalevskaja Award, etc.) during the postdoctoral period. Candidate selection will be based on whether submission of such a proposal is a realistic goal in addition to usual measures of scientific excellence. The candidates will be associated with faculty members who are named on the website thinkatruhr.de. THINK@Ruhr will foster and support any research activities of the postdocs. Our universities offer attractive academic career track options and family friendly conditions. For more information including application procedure and contact information please visit https://thinkatruhr.de/what-we-offer/

Feb. 11, 2022

PostDoc position in Göttingen: Retina research and computational neuroscience

by Gollisch, Tim

An exciting full-time postdoc position is available in the lab of Tim Gollisch at the University Medical Center Göttingen, Germany. The project centers on investigating information processing and neural coding in the neural network of the vertebrate retina, using a combination of experimental recordings with computational modeling and data analysis. The postdoc will contribute to our ongoing work under the ERC Consolidator Grant project CODE4Vision (https://www.retina.uni-goettingen.de/code4vision/) The work includes participation in recordings from the isolated retina (mostly mouse) with multielectrodes, using both wild-type retinas and optogenetic retina models of vision restoration therapy. Patch-clamp recordings are also a possibility. A strong focus will then be to combine these experiments with novel tools for data analysis and mathematical modeling, using cascade-type models (linear-nonlinear models and beyond), artificial neural networks, or machine-learning techniques to analyze the retinal network. Our research group is integrated into the strong and lively neuroscience research community of Göttingen, including the university, several Max Planck Institutes, the German Primate Center, and the European Neuroscience Institute. We are also part of the Bernstein Center for Computational Neuroscience Göttingen and of the Collaborative Research Centers "Cellular Mechanisms of Sensory Processing" (http://sfb889.uni-goettingen.de/) and "Mathematics of Experiment" (https://www.uni-goettingen.de/en/628179.html) For more information about the research group, please visit the group's website: https://www.retina.uni-goettingen.de/. We are looking for a highly motivated scientist with a good background in electrophysiology or computational/theoretical neuroscience. Experience in both of these areas is a bonus, but not required. Experience in computer programming or in scripting of data analysis routines is also a plus. The position is for 2 years initially with the possibility for renewal. Please send your application to Tim Gollisch (tim.gollisch(a)med.uni-goettingen.de<mailto:tim.gollisch@med.uni-goettingen.de>), including a CV, a statement of what interests you about the group's work, and contact details for two references. The University Medical Center Göttingen is an equal opportunities employer, and women are especially encouraged to apply. Applicants with disabilities and equal qualifications will be given preferential treatment.

Feb. 11, 2022