January 2022 - Comp-neuro - lists.cnsorg.org

Special Issue on Computational Neuroscience in the Journal of Physiology

by Michael Okun

Dear Colleagues, We would like to announce a special issue of the Journal of Physiology focused on computational neuroscience, to be published in commemoration of the 70th anniversary of the publication of the Hodgkin-Huxley model and to celebrate the 600th volume of the journal. The special issue will include a number of invited reviews covering synaptic and network models, with further information available in the issue's advert flyer: https://physoc.onlinelibrary.wiley.com/pb-assets/assets/14697793/Affiche_Co… To complement the above reviews, the journal seeks submissions of original research articles in all areas of theoretical and computational neuroscience. The submission deadline is 15th of April 2022. Additional details on the special issue can be found in the official announcement on the journal's webpage: https://physoc.onlinelibrary.wiley.com/hub/journal/14697793/resources/call-… Thank you, Katalin Toth and Michael Okun

Jan. 24, 2022

[3rd BCI-UC] Final program online

by Philipp Raggam

Dear colleagues, We are very excited to announce that the final program of the 3rd Brain-Computer Interface Un-Conference (BCI-UC) is now online: https://bciunconference.univie.ac.at/3rd-bci-uc/ All presentations are streamed live and free-of-charge on January 27th (Thursday), 2022, from 03:00 pm to 09:00 pm (CET) via: https://www.crowdcast.io/e/3rd-brain-computer-interface-unconference/1 The 3rd BCI-UC features keynotes by *Cynthia A. Chestek* on "Neural Interfaces for Controlling Finger Movements" and by *Thorsten O. Zander* on "The Age of Neuroadaptivity". In addition, we have seven contributed presentations and one panel discussion on a broad range of topics for BCI technologies. We are looking forward to seeing you all at the 3rd BCI-UC! Best regards, The BCI-UC committee: Moritz Grosse-Wentrup Anja Meunier Philipp Raggam Jiachen Xu -- DI Philipp Raggam, BSc Research Group Neuroinformatics Faculty of Computer Science University of Vienna Hörlgasse 6, A-1090 Wien, Austria

Jan. 24, 2022

Update IMRF 2022 in Ulm

by Marc Ernst

Dear colleagues and friends of IMRF, This is just a quick update on the International Multisensory Research Forum (IMRF), scheduled for July 4-7 2022 in Ulm, Germany. ( https://cops.ifp.uni-ulm.de/imrf2022/ <https://cops.ifp.uni-ulm.de/imrf2022/> ) We are monitoring the current pandemic situation very closely and as you are aware, predictions into the longer future have been proven to be very difficult. This uncertainty is why we did not update you earlier. Anyway, here is the current status of our planning and thinking: We are still very determined to host IMRF in the summer of 2022 as an in presence meeting. Whether or not there will be a hybrid addition to IMRF which would allow for also online participation, is not yet determined, as any hybrid format is a huge organisational challenge. To make it easier for you to decide whether or not you can travel to Germany in summer 2022, we have tried to post the deadlines for abstract submission and registration as late as possible. Currently, the abstract submission deadline is set to April 01, the date by which you can also change and adapt your already submitted abstract (and symposium contributions). The review process will start after this date. We strife to keep the already accepted symposia and ask the symposium organisers / attendees to update their information accordingly if individual talks need to be adapted. Please get in contact with us by the submission deadline in case of necessary substitutions, The early registration deadline is set to May 20 giving us a bit more than a month to plan with the number of participants. Given the current pandemic regulations in Germany to not pack rooms as densely as we used to, we may have to limit the number of participants to something around 180 to 200 people. However, as you are aware, the situation and thus rules keep changing. In any case it cannot hurt to register early to secure your space, as limits, if they apply, will be done on a first come first serve basis. Here is a link to the current regulations in the state of Baden Württemberg, which is permanently adapted as the situation changes: https://www.baden-wuerttemberg.de/en/service/aktuelle-infos-zu-corona/coron… <https://www.baden-wuerttemberg.de/en/service/aktuelle-infos-zu-corona/coron…> We will keep you posted as soon as we have more information. Stay safe and healthy - best, Marc --------------------------------------------------------- Prof. Dr. Marc Ernst Applied Cognitive Psychology Faculty for Computer Science, Engineering & Psychology Ulm University Albert-Einstein-Allee 43 89081 Ulm room nr.: 43.3.103 mail: marc.ernst(a)uni-ulm.de <mailto:marc.ernst@uni-ulm.de> phone int.: +49-(0)731-50 320 50 phone ext.: +49-(0)731-50 356 27 sekr: +49-(0)731-50 320 51 mobile: +49-(0)152-22 543 156

Jan. 24, 2022

CRNS Talk Series - Live Talk by Dr. Alessandra Sciutti - Italian Institute of Technology (IIT)

by Amir Aly

**Apologies for cross-posting ** Dear All, The Center for Robotics and Neural Systems (CRNS <https://www.plymouth.ac.uk/research/robotics-neural-systems>) at Plymouth University is pleased to announce the talk of *Dr. Alessandra Sciutti* from the *Italian Institute of Technology* (IIT) on Wednesday February 2nd at *11:00 am - 12:30 pm (GMT) *over *Zoom*. Registration is* required* and free: Registration Form <https://docs.google.com/forms/d/e/1FAIpQLSfPms0aWvXSD3xOg3eBEUMt-6vKq-yETd9…> . *Title of the talk*: Cognitive robots for more humane interactions *Abstract*: A cognitive robot is a robot capable to adapt, predict, and pro-actively interact with the environment and communicate with the human partners. Our research leverages on the use of the humanoid robot iCub to test how to build such a cognitive interactive agent. We model the minimal skills necessary for cognitive development, such as the visual features that enable to recognize the presence of other agents in the scene, their internal state and their responses to robot behavior. In a dual approach, we are trying to understand how to modulate robot movement to make it more transparent and understandable to non-expert users. As a next step, we are focusing on the development of simple cognitive architectures that could integrate the sensory and motor capabilities developed in isolation together with memory, internal motivation and learning mechanisms, to achieve personalization and adaptation skills. We believe that only a structured effort toward cognition will in the future allow for more humane machines, able to see the world and people as we do and engage with them in a meaningful manner. --- If you have any questions, please don't hesitate to contact me, Regards ---------------- *Dr. Amir Aly* Lecturer in Artificial Intelligence and Robotics Center for Robotics and Neural Systems (CRNS) School of Engineering, Computing, and Mathematics Room B332, Portland Square, Drake Circus, PL4 8AA University of Plymouth, UK

Jan. 23, 2022

DENDRITES 2022: second call for abstracts due on Feb. 1st, 2022

by Yiota Poirazi

DENDRITES 2022 EMBO Workshop on Dendritic Anatomy, Molecules and Function Heraklion, Crete, Greece 23-26 May 2022 http://meetings.embo.org/event/20-dendrites Dear Colleagues, We are pleased to announce the solicitation of abstracts for short oral or poster presentations at the EMBO Workshop on DENDRITES 2022, which will take place in Heraklion, Crete on 23-26 May 2022. This is the 4th of a very successful series of meetings on the island of Crete that is dedicated to dendrites. The meeting will bring together scientific leaders from around the globe to present their theoretical and experimental work on dendrites. The meeting program is designed to facilitate discussions of new ideas and discoveries, in a relaxed atmosphere that emphasizes interaction. We have secured an exciting list of speakers, including: Anthony Holtmaat, University of Geneva, CH Attila Losonczy, Columbia University, US Christine Grienberger, Brandeis University, US David DiGregorio, Institut Pasteur, FR Dan Johnston, University of Texas at Austin, US Hermann Cuntz, Ernst Strüngmann Institute for Neuroscience, DE Holly Cline, The Scripps Research Institute, US Idan Segev, Hebrew University, IL Jackie Schiller, Technion, IL Judit Makara, Institute of Experimental Medicine of the Hungarian Academy of Sciences, HU Julijana Gjorgjieva, MPI for Brain Research, DE Karen Zito, University of California Davis, US Linnaea Ostroff, University of Connecticut, US Lisa Topolnik, Université Laval, Canada, CA Mark Harnett, MIT, US Peter Jonas, Institute of Science and Technology Austria, AT Terry Sejnowski, Salk Institute, US Wenbiao Gan, New York University, US Please register (no payment required) and submit your abstract online at: http://meetings.embo.org/event/20-dendrites Submissions of abstracts are due by *February 1st, **2022* Notifications will be provided by February 28th, 2022 Registration payment due by April 15th, 2022 Potential attendees are strongly encouraged to submit an abstract as presenters will have registration priority. For more information about the conference, please refer to our web site or send email to info(a)mitos.com.gr We look forward to seeing you in person at DENDRITES 2022! The organizers, Yiota Poirazi, Kristen Harris, Matthew Larkum, Michael Häusser -- Panayiota Poirazi, Ph.D. Research Director Institute of Molecular Biology and Biotechnology (IMBB) Foundation of Research and Technology-Hellas (FORTH) Vassilika Vouton, P.O.Box 1385, GR 70013, Heraklion, Crete GREECE Tel: +30 2810-391139 / -391238 Fax: +30 2810-391101 Εmail: poirazi(a)imbb.forth.gr Lab site: www.dendrites.gr

Jan. 23, 2022

CRNS Talk Series - Live Talk by Dr. Alessandra Sciutti - Italian Institute of Technology (IIT)

by Amir Aly

**Apologies for cross-posting ** Dear All, The Center for Robotics and Neural Systems (CRNS <https://www.plymouth.ac.uk/research/robotics-neural-systems>) at Plymouth University is pleased to announce the talk of *Dr. Alessandra Sciutti* from the *Italian Institute of Technology* (IIT) on Wednesday February 2nd at *11:00 am - 12:30 pm (BST) *over *Zoom*. Registration is* required* and free: Registration Form <https://docs.google.com/forms/d/e/1FAIpQLSfPms0aWvXSD3xOg3eBEUMt-6vKq-yETd9…> . *Title of the talk*: Cognitive robots for more humane interactions *Abstract*: A cognitive robot is a robot capable to adapt, predict, and pro-actively interact with the environment and communicate with the human partners. Our research leverages on the use of the humanoid robot iCub to test how to build such a cognitive interactive agent. We model the minimal skills necessary for cognitive development, such as the visual features that enable to recognize the presence of other agents in the scene, their internal state and their responses to robot behavior. In a dual approach, we are trying to understand how to modulate robot movement to make it more transparent and understandable to non-expert users. As a next step, we are focusing on the development of simple cognitive architectures that could integrate the sensory and motor capabilities developed in isolation together with memory, internal motivation and learning mechanisms, to achieve personalization and adaptation skills. We believe that only a structured effort toward cognition will in the future allow for more humane machines, able to see the world and people as we do and engage with them in a meaningful manner. --- If you have any questions, please don't hesitate to contact me, Regards ---------------- *Dr. Amir Aly* Lecturer in Artificial Intelligence and Robotics Center for Robotics and Neural Systems (CRNS) School of Engineering, Computing, and Mathematics Room B332, Portland Square, Drake Circus, PL4 8AA University of Plymouth, UK

Jan. 23, 2022

We are recruiting a post-doc to work on a project using real-time fMRI neurofeedback

by Steve Weisberg

Hi all, Natalie Ebner and I are recruiting a postdoctoral researcher to work on real-time fMRI neurofeedback in the domain of spatial navigation in aging! If you (or someone you know) is interested, please get in touch! The Spatial Cognition and Navigational Neuroscience (SCANN <https://scannlab.psych.ufl.edu/>) and Social-Cognitive and Affective Development <https://ebnerlab.psych.ufl.edu/> Laboratories at the University of Florida are hiring a postdoctoral researcher who will lead real-time fMRI neurofeedback experiments related to the cognitive neuroscience of spatial navigation in aging and age-related pathology. The position will be co-supervised by Dr. Steven Weisberg and Dr. Natalie Ebner, in collaboration with Dr. Dawn Bowers. The initial position is a 2-year appointment, with subsequent renewals depending on funding availability. Preferred start date is *March 1, 2022,* but is negotiable. Salary will be paid at the NIH postdoctoral levels. *If interested, please contact Steven Weisberg *(stevenweisberg(a)ufl.edu) *and Natalie Ebner *(natalie.ebner(a)ufl.edu) *by email and include a CV and two letters of recommendation*. We will accept applications until the position is filled. Please note, if you do not meet the preferred qualifications or are not sure about position fit, *email us anyway*! *Required Qualification: *PhD in psychology, neuroscience, computer science, biomedical engineering, or a related field. *Preferred Qualifications: *(1) Experience with real-time fMRI neurofeedback; (2) Experience with fMRI design and analysis (including FSL, Matlab, or Python tools); (3) Experience with cognitive aging and/or Alzheimer’s disease is a plus. -- --------------------------------------------- *Steven M. Weisberg, PhD * Pronouns: he/him/his Assistant Professor of Psychology University of Florida Director: SCANN Lab <http://scannlab.psych.ufl.edu>

Jan. 21, 2022

Neuroscience data analyst at the European Neuroscience Insitute in Göttingen

by googlemail

The European Neuroscience Institute is looking to fill the position of a data analyst (full time). We are looking for a data analyst with interest and experience in systems neuroscience. Research at the European Neuroscience Institute ranges from molecular biology to human psychophysics and involves a range of model organisms (from drosophila to non-human primates), as well as techniques and approaches (electrophysiology, two-photon imaging, fMRI, EEG, behavior). The data analyst is expected to work closely with all of the research groups at the European Neuroscience Institute, supporting research efforts, e.g. through modelling and statistical analyses of high-dimensional data, image processing, and programming/development of experiments including the opportunity to develop and publish, e.g. analytical tools that arise from this work. • The applicant should possess a university degree (minimum M. Sc. or equivalent) in a relevant field, e.g., statistics, biostatistics, informatics, or similar. Prior experience in the field of systems neuroscience is highly desired. • The applicant should have experience in a research setting utilizing quantitative methods and statistics. The applicant should also demonstrate strong analytical skills. Knowledge of novel and emerging analysis techniques is highly desirable. Future/forward thinking in the area of big data analytics/informatics and applying them to contribute to the research groups’ scientific process is expected. • The applicant should be skilled in the analysis of multivariate datasets to reveal patterns and build models; conduct exploratory data analysis, and communicate with team lead/team members; identify improvements for existing data management and recommend requirements for new systems. • In addition, contribute to replicability by making suggestions for existing data management and recommend requirements for new systems and identify potential data integrity issues. We are committed to open data/open science and appreciate interest and expertise in this area. • Utilize programming languages such as Python, Matlab and/or C++. • A good command of English is mandatory. The University Medical Center Göttingen takes flexible account of the individual design of working hours at the workplace. It is interested in implementing the wishes of its employees as far as possible. If you are interested in this job and have specific questions about working hours, please contact us. Women are especially encouraged to apply. Applicants with disabilities and equal qualifications will be given preferential treatment. The position is financed until December 31st, 2024 with extension options. The envisioned start date is May 2022 but this is flexible. The deadline for applications is February 28th, 2022. Please send your application (CV, letter of motivation) via e-mail as a single PDF-file to j.clemens(a)eni-g.de. Jan Clemens European Neuroscience Institute Neural Computation and Behavior group Grisebachstr. 5 37077 Göttingen, Germany janclemenslab.org

Jan. 21, 2022

Two postdoc positions in computational and systems neuroscience

by googlemail

Two postdoc positions are available in the lab of Jan Clemens at the European Neuroscience Institute Göttingen, Germany. A major focus of the lab is discovering how sensory information is processed and integrated to drive behavior. We combine high-throughput behavioral assays, machine learning (pose tracking), computational modelling, and modern systems neuroscience tools (calcium imaging and optogenetics). The postdocs to be hired will focus on how different sensory modalities are integrated to organize social interactions in fruit flies, with the goal of identifying the neural substrates and computations driving social behavior. We are going to combine a variety of state-of-the-art techniques, including automated behavioral analyses, optogenetics, in-vivo two photon imaging, and computational modelling. The postdocs will have the opportunity to learn experimental and computational skills in the lab. Your profile: • PhD in neuroscience or biology, physics, engineering, computer science or equivalent. • Experience with at least one of these techniques: calcium imaging, electrophysiology, Drosophila genetics and behavior, computational modelling. • A track record of scientific publications or conference presentations. • Good command of the English language. The position is financed until January 31st, 2025. The envisioned start date is May 2022 but this is flexible. The deadline for applications is February 28th, 2022. Please send your application as a single pdf to Jan Clemens (j.clemens(a)eni-g.de) including a CV as well as names and contact details of two references. Please make sure to include a short statement of why this project interests you and how you think you could contribute, based on your scientific background. Jan Clemens European Neuroscience Institute Neural Computation and Behavior group Grisebachstr. 5 37077 Göttingen, Germany janclemenslab.org

Jan. 21, 2022

Allen Institute Modeling Software Workshop

by Anton Arkhipov

Join us for the inaugural Allen Institute Modeling Software Workshop in beautiful Seattle, on July 25-26, 2022! https://alleninstitute.org/what-we-do/brain-science/events-training/2022-mo… Sponsored by the NIH BRAIN program, this workshop is organized by the Allen Institute and our collaborators at the Theoretical and Computational Biophysics Group at the University of Illinois at Urbana-Champaign. This 2-day in-person* workshop will consist of interactive seminars and hands-on computational work. It will focus on teaching the skills for building and simulating complex and heterogeneous network models grounded in real biological data. The tools covered by the workshop include: * The SONATA file format<https://github.com/AllenInstitute/sonata> for multiscale neuronal network models and simulation output, supporting standardized and computationally efficient storage and exchange of models. * The Brain Modeling ToolKit (BMTK)<https://alleninstitute.github.io/bmtk/> – a Python-based software package for building and simulating large-scale neural network models at multiple levels of resolution. * The Visual Neuronal Dynamics (VND)<http://www.ks.uiuc.edu/Research/vnd/> – a program for displaying, animating, and analyzing neural network models using 3D graphics and built-in scripting. Workshop Topics: * Building heterogenous neural networks at different levels of resolution * Simulating networks of biophysically detailed, compartmental neuronal models * Simulating networks of point-neuron models * Providing realistic spiking inputs to the neural networks * Simulating perturbations * Simulating extracellular electric field * Using and sharing models in the SONATA format * Visualizing network models’ structure and dynamics in 3D We are eager to host a diverse audience, and we encourage trainees, scientists, and PIs to apply. Prior experience in modeling is not required or expected. The Allen Institute strives to make training opportunities available on a fair and equitable basis. Some travel funding is available for participants with financial need. Please indicate on your application whether such support is needed. Applications will be evaluated on a need-blind basis. There is no fee to participate in the workshop. Applications are due on March 15. All applicants will be notified of the status of their application by May 20. *If conducting the workshop in person becomes impossible due to covid-related safety concerns, it will be replaced by an online workshop on the same dates. See more information and apply here: https://alleninstitute.org/what-we-do/brain-science/events-training/2022-mo… Anton Arkhipov Associate Investigator T: 206.548.8414 E: antona(a)alleninstitute.org<mailto:antona@alleninstitute.org> [Text Description automatically generated] alleninstitute.org<https://alleninstitute.org> brain-map.org

Jan. 19, 2022