July 2021 - Comp-neuro - lists.cnsorg.org

PDF at the intersection of brain dynamics, machine learning, and psychedelics

by AaronJ Gruber

*Postdoctoral Researcher at the University of Calgary* We are recruiting a talented postdoctoral researcher to participate in a cutting-edge International Network for Brain-Inspired Computation that includes nodes in Montreal, Paris, and the Pacific Northwest of the US and Canada (e.g. University of Washington, Allen Brain Institute). The project is at the intersection of mathematics, physics, and neuroscience in the general area of complex network dynamics and emergent activity patterns and representations that drive biological computation. The specific objective is to understand cognitive brain function and the effects of psychedelics by analyzing large-scale ensemble neural data collected in our labs, in conjunction with computational and/or analytical work to identify key mathematical principles and develop theories of core function. The ideal candidate will have a quantitative background (e.g. PhD in mathematics, physics, computer science) along with experience in applying this background to neuroscience. This postdoctoral position is partially funded by the Pacific Institute for Mathematical Sciences and is aimed to strengthen the link between the Campus Alberta computational neuroscience community at the University of Calgary (Complexity Science Group, Hotchkiss Brain Institute) and the University of Lethbridge (Canadian Center for Behavioural Neuroscience) with the other network members including the Computational Neuroscience Center at the University of Washington. The position is open immediately with primary locations in either Calgary or Lethbridge. The specific start date has to be within five years of being awarded a PhD degree. The position is funded for at least two years and includes an annual stipend in the range of CAD$42,000 – $50,000 plus benefits. Opportunities for brief residences in partner nodes (Montreal, Seattle, or Paris) are also available. Interested candidates should submit their application package including a cover letter, their CV with a list of publications, brief statement of research interests and their possible start dates in PDF format to Dr. Jörn Davidsen (jdavidse(a)ucalgary.ca) and Dr. Aaron Gruber (aaron.gruber(a)uleth.ca) Applicants should arrange for at least two letters of reference to be sent as well. Review of applications will begin* July 31st, 2021*, and continue until the position is filled. For additional information and informal inquiries, please contact Dr. Davidsen or Dr. Gruber. We strive for a diverse and inclusive environment, and encourage applications from members of any identity

July 21, 2021

Multiple postdoctoral openings in multi-scale brain network dynamics, reinforcement learning and decision-making at Washington University in St. Louis

by Ching, ShiNung

Multiple postdoctoral openings are available for a new and large project to study the circuit underpinnings of reinforcement learning and decision-making. A key focus is on understanding multiple time-scales of information processing in neural circuits and involvement of neuron-astrocyte interactions. Experiment- and theory-forward positions are available. Applicants should have prior experience in neuroscience (computational or otherwise), modeling of large-scale systems, optimization, machine learning or related areas. Positions will be appointed in Neuroscience and/or Engineering. Washington University in St. Louis is an independent, Research 1 university in St. Louis, MO, USA, with nearly 60 of the university's graduate and undergraduate programs ranked in the top 25 by US News & World Report. Interested applicants are invited to send a CV and brief description of interests to shinung(a)wustl.edu<mailto:shinung@wustl.edu>

July 21, 2021

Postdoc opportunity in EEG computational analysis (Houston, TX)

by Maheshwari, Atul

The Maheshwari Lab is looking for an enthusiastic post-doctoral associate to join the lab ASAP. We study mouse models of epilepsy, trying to understand the underlying development of epilepsy as well as the overlap between epilepsy and comorbidities such as Attention Deficit Hyperactivity Disorder (ADHD). Techniques used in the lab include implantation of EEG electrodes, immunohistochemistry, confocal imaging, advanced computational analysis of EEG, video-EEG monitoring, and behavioral testing for sustained attention. We also apply advanced techniques to analyze scalp and intracranial EEG from patients who are being evaluated in an Epilepsy Monitoring Unit (EMU) setting. The main role for this position is performing advanced computational EEG analysis. Experience with machine learning is preferred. Prior work with rodents is not necessary. For more information or to apply: https://www.nature.com/naturecareers/job/postdoctoral-associate-baylor-coll…. You'll love Houston - a diverse and friendly environment for science! You can contact me by email at atul.maheshwari(a)bcm.edu<mailto:atul.maheshwari@bcm.edu> or DM me on Twitter @NeuroMaheshwari. Atul Maheshwari, MD Associate Professor Departments of Neurology and Neuroscience Baylor College of Medicine

July 21, 2021

Apply Now: Shanahan Foundation Fellowship at the Interface of Data and Neuroscience

by Eric Shea-Brown

Shanahan Foundation Fellowship at the Interface of Data and Neuroscience Overview The Shanahan Foundation Fellowship at the Interface of Data and Neuroscience is a new, three-year fellowship program that aims to: · Integrate data scientists in neuroscience research · Challenge traditional approaches to neuroscience · Provide multidisciplinary, multi-organizational co-mentorship · Provide a network and community · Support career development in data science The fellowship will be co-hosted by the Allen Institute and the University of Washington (through its eScience Institute and the Computational Neuroscience Center) and is directed by Dr. Christof Koch at the Allen Institute. Details During the three-year fellowship, fellows will identify a mentor at the Allen Institute, where the fellows will be based. Fellows will select a co-mentor at the University of Washington who will provide additional guidance on a project designed by the fellow, focused on quantitative analysis of neuroscience data available through the Allen Institute’s vast data banks <http://www.brain-map.org/> – ranging from molecular, genomic, transcriptional, physiological, morphological, anatomical and functional whole-brain level in the brains of mice, non-human primates and humans – or through ongoing laboratory work. Fellows will participate in the postdoctoral career development program at the University’s e-Science Institute and the UW Institute of Neuroengineering (UWIN). The eSciences Institute offers regular workshops on key topics including cloud computing, python and reproducibility. New fellows will attend the annual Summer Workshop on the Dynamic Brain <https://alleninstitute.org/what-we-do/brain-science/events-training/summer-…> where they will learn how to apply data science skills to neuroscience data and questions. Throughout the three years, fellows will be supported in developing a network in the neuroscience field and sharing their progress with peers at conferences. Up to three fellows will be selected to begin in Fall 2021. Eligibility Requirements Applicants must be data scientists in a broad sense, with a Ph.D. in a quantitative field such as computer science, electrical engineering, physics, mathematics or biology with a background in statistical, computational and machine learning methods. Ph.D.’s should have been awarded in the last 3 years. One goal of the fellowship is to build a network of collaborators, as such, priority will be given to applicants who are not currently postdoctoral fellows or scientists at the University of Washington or the Allen Institute respectively. We believe high-quality science can only be produced when it includes different perspectives. We are building an environment of diversity and inclusion and encourage people from all backgrounds to apply for this fellowship. Application Instructions For full consideration, please submit your application by August 1, 2021. Applications may continue to be considered after this deadline on a rolling basis until positions are filled. Learn more and apply on the Shanahan Fellowship Website <https://alleninstitute.org/what-we-do/brain-science/careers/shanahan-founda…>. Applications must include: · A curriculum vitae from the applicant · Two letters of support from advisors and other mentors · A one page personal statement from the applicant describing their history, activities and interests as an individual (especially those outside of science) which may give the committee a greater sense of you as a person and your ability to simultaneously interact with and challenge traditional scientific fields. · A two to three page research statement from the applicant describing their prior research, interests in applying data science to the field of neuroscience, potential research interests (including tools they are familiar with) and how this fellowship aligns with their career goals. · The choice of the final advisor/co-advisor will be accomplished during the first year of this fellowship. Questions? Email: shanahan.fellow(a)alleninstitute.org <mailto:shanahan.fellow@alleninstitute.org>

July 21, 2021

SCGB Global Postdoc/Student Meeting: Thursday, August 5th by Kayvon Daie

by Laura Long

The Simons Collaboration on the Global Brain (SCGB) hosts postdoc/student meetings to bring together trainees interested in neural coding and dynamics to discuss ideas and data. In addition to regional meetings in New York, Boston, and the Bay Area, SCGB holds a Global virtual series to connect systems and computational neuroscientists across the world. We would love to see you at this month's Global meeting! Please see event details and Zoom link below. SCGB Global Postdoc/Student Meeting: https://www.eventbrite.com/e/scgb-global-postdocstudent-meeting-tickets-163… Thursday, August 5th, 1pm Eastern Time https://simonsfoundation.zoom.us/j/93637538440?pwd=MnNCeVF1eThKZmVUa2p5bUlR… Passcode: 443599 *Kayvon Daie*Research Associate, Svoboda Laboratory HHMI's Janelia Research Campus *Dissection of the neural circuitry underlying short-term memory* Short-term memory is associated with persistent neural activity without sustained input, arising from the interactions between neurons with brief time constants. A variety of neural circuit models could account for existing measurements of neural activity. To explore which, if any, of these models are most consistent with neural circuitry, we measured coupling between functionally characterized motor cortex neurons in mice performing a memory-guided response task. Targeted two-photon photostimulation of small (<10) groups of neurons produced sparse calcium responses in coupled neurons over approximately 100 μm. Neurons with similar task-related selectivity were preferentially coupled. Photostimulation of different groups of neurons modulated activity in different subpopulations of coupled neurons. Responses of stimulated and coupled neurons persisted for seconds, far outlasting the duration of the photostimuli. Photostimuli produced behavioral biases that were predictable based on the tuning of the photostimulated population, even though photostimulation preceded the behavioral response by seconds. Our results suggest that memory-related neural circuits contain intercalated, recurrently connected modules and that these modules are coupled via long-range “hidden feedforward” connections. *Please note that this meeting is open to all neuroscience postdocs and PhD students, regardless of location or SCGB affiliation (sorry, no PIs). *After Q&A with the speaker, we will open breakout rooms for anyone interested in staying to chat, network, or further discuss the talk. In addition to these breakouts, SCGB Scientific Staff will be available for "office hours" to chat and answer questions about SCGB programs and support. Registration on EventBrite is encouraged but not required: https://www.eventbrite.com/e/scgb-global-postdocstudent-meeting-tickets-163… Please contact Laura Long at llong(a)simonsfoundation.org with any questions. Sign up for our mailing list here: https://forms.gle/DZa1b2WCtvw5XFhAA

July 20, 2021

Postdoc position in Tuebingen on TMS/ERP projects to understand visual perception/attentional processes

by Zhaoping Li

Two postdoc positions are available at the Max Planck Institute for Biological Cybernetics in Tuebingen, Germany, to work on projects aimed towards understanding visual attentional and perceptual processes using TMS and/or EEG methodologies. The framework and motivation of the projects can be found at http://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html. The projects can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. TMS and/or EEG methodologies can be used in combination with fMRI/MRI, eye tracking, and other related methods as necessary. The postdoc will be working closely with the principal investigator and other members of Zhaoping's team when needed. Candidates should be skilled in visual psychophysics and proficient in programming, previous experience in TMS and/or ERP is a plus. Please send your application by a single pdf file, including your CV, a brief statement of research interests, an approximate date for availability, and names and contacts for three references to jobs.li(a)tuebingen.mpg.de. Applications sent before September 1st will be preferred, but later applications will be considered until the positions are filled. The appointment is for one year, renewable for additional years. Enquiry to li.zhaoping(a)tuebingen.mpg.de Li Zhaoping -- Li Zhaoping Ph.D. Prof. of Cognitive Science, University of Tuebingen Head of Dept of Sensory and Sensorimotor Systems, Max Planck Institute of Biological Cybernetics Author of "Understanding vision: theory, models, and data", Oxford University Press, 2014 www.lizhaoping.org

July 20, 2021

PhD position - Neuroscience - University of Antwerp, Belgium

by Georgios A. Keliris

The Bio-Imaging Lab, Department of Biomedical Sciences in the Faculty of Pharmaceutical, Biomedical and Veterinary Sciences is looking for a full-time doctoral scholarship holder in the field of Biomedical Sciences/Neuroscience with a focus on using neuromodulation to alleviate deficits in Alzheimer’s disease Position You will work actively on the preparation and defence of a PhD thesis in the field of Biomedical Sciences/Neuroscience. The PhD project will use state-of-the-art techniques including MRI, fiberoptic photometry, electrophysiology, behaviour, and neuromodulations tools (chemogenetics/DREADDs and/or optogenetics) specifically targeting neurons in the basal forebrain to alleviate behavioural and brain network deficits of rodent models of neurodegeneration (Alzheimer’s Disease). You will publish scientific articles related to the research project. You will carry out a limited number of teaching and research support tasks for the Bio-Imaging Lab. Profile You hold a Master degree in neuroscience, biomedical sciences, cognitive science, engineering or related fields or you will have obtained it by the time you start work. You can demonstrate excellent study results. Your teaching competences are in line with the University of Antwerp’s educational vision <https://www.uantwerpen.be/en/about-uantwerp/organisation/mission-and-vision…>. Your research qualities are in line with the faculty and university research policies <https://www.uantwerpen.be/en/research/management/>. You act with attention to quality, integrity, creativity and cooperation. You have a FELASA C attest or you are willing to obtain one. You are fluent in English and have strong communication skills. Preferably you have experience with (small-animal) imaging or electrophysiology Experience in one or more of: imaging, mathematics, computational neuroscience, programming (e.g., Matlab/Python/C/…) will be considered as a bonus. What we offer We offer a doctoral scholarship for a period of two years. Following a positive evaluation, the scholarship can be renewed once for another two-year period. The planned start date is 1 October 2021 or as soon as possible after that date. Your monthly scholarship amount is calculated according to the scholarship amounts <https://www.uantwerpen.be/en/jobs/what-do-we-offer/salaries/>for doctoral scholarship holders on the pay scales for Contract Research Staff (Dutch: Bijzonder Academisch Personeel, BAP). You will do most of your work at Campus Drie Eiken (CDE) in a dynamic and stimulating working environment. Find out more about working at the University of Antwerp here <https://www.uantwerpen.be/en/jobs/uantwerp-as-an-employer/hr-policy/>. Want to apply? You can apply for this vacancy through the University of Antwerp’s online job application platform up to and including 16 August 2021 (by midnight Brussels time). Click on the 'Apply' button, complete the online application form and be sure to include the following attachments: a motivation letter, your academic CV, three names and contact information of people that can provide recommendation letters, any additional certificates that can indicate your competences. The selection committee will review all of the applications as soon as possible after the application deadline. As soon as a decision has been made, we will inform you about the next steps in the selection procedure. If you have any questions about the online application form, please check the frequently asked questions <https://www.uantwerpen.be/en/jobs/apply-online-uantwerp/> or send an email to jobs(a)uantwerpen.be <mailto:jobs@uantwerpen.be>. If you have any questions about the job itself, please contact Prof. Georgios Keliris, georgios.keliris(a)uantwerpen.be <mailto:georgios.keliris@uantwerpen.be> and include the following in the title of your email: <QNEUROPOSKEL>. The University of Antwerp received the European Commission’s HR Excellence in Research Award <https://www.uantwerpen.be/en/jobs/uantwerp-as-an-employer/hr-excellence-in-…> for its HR policy. We are a sustainable, family-friendly organisation which invests in its employees’ growth. We encourage diversity <https://www.uantwerpen.be/en/about-uantwerp/organisation/mission-and-vision…> and attach great importance to an inclusive working environment and equal opportunities, regardless of gender identity, disability, race, ethnicity, religion or belief, sexual orientation or age. We encourage people from diverse backgrounds and with diverse characteristics to apply.

July 19, 2021

Bernstein Conference 2021 - registration is now open

by Anja Dorrn

Each year the Bernstein Network invites the international computational neuroscience community to the annual Bernstein Conference for intensive scientific exchange. It has established itself as one of the most renown conferences worldwide in this field, attracting students, postdocs and PIs from around the world to meet and discuss new scientific discoveries. Due to the ongoing pandemic the Bernstein Conference will be held online. www.bernstein-conference.de ____ IMPORTANT DATES & NEWS * Bernstein Conference: September 21-23, 2021 * Registration is now open * Abstract submission deadline: August 3, 2021, 1 pm CEST * Selected Satellite Workshops are now online<https://bit.ly/BC21_workshops> ____ REGISTRATION The participation at the online Bernstein Conference 2021 will be free of charge for all participants. Thus the Bernstein Network contributes to keep the scientific exchange alive in the ongoing challenges during the pandemic. Please register here: https://hopin.com/events/bernstein-conference-2021 ____ ABSTRACTS We invite the computational neuroscience community to submit their abstracts for poster presentations. All accepted abstracts will be published online and will be citable via Digital Object Identifiers (DOI). Abstract submission is open until August 3, 1 pm CEST. Further information can be found here: https://bit.ly/BC21_abstracts ____ INVITED SPEAKERS Keynote Timothy Behrens (University of Oxford, UK) Invited Talks Athena Akrami (University College London, UK) Nadine Gogolla (Max Planck Institute for Neurobiology, Martinsried, Germany) Guillaume Hennequin (University of Cambridge, UK) Jennifer Li & Drew Robson (Max Planck Institute for Biological Cybernetics, Tübingen, Germany) Scott Lindermann (Stanford University, USA) Ashok Litwin-Kumar (Columbia University, New York City, USA) Ida Momennejad (Microsoft Research, New York City, USA) Cristina Savin (New York University, USA) Marion Silies (Johannes Gutenberg University, Mainz, Germany) Daniela Vallentin (Max Planck Institute for Ornithology, Seewiesen, Germany) ____ CONFERENCE COMMITTEE Christian Leibold (Conference Chair) Julijana Gjiorgjieva (Program Chair) Christian Machens (Program Vice Chair) Marion Silies (Workshop Chair) Moritz Helias (Workshop Vice Chair) & Matthew Botvinick, Megan Carey, Peter Dayan, Brent Doiron, Rainer Friedrich, Ann Hermundstad, Srdjan Ostojic, Nathalie Rochefort, Nicole Rust, Gasper Tkacik ____ For any further questions, please contact: <bernstein.conference(a)fz-juelich.de> bernstein.conference(a)fz-juelich.de -- Dr. Anja Dorrn Scientific Coordinator Bernstein Network Computational Neuroscience | Bernstein Coordination Site (BCOS) Branch Office of the Forschungszentrum Jülich at the University of Freiburg Hansastr. 9A | 79104 Freiburg, Germany phone: (+49) 0761 203 9589 web: www.bernstein-network.de<http://www.bernstein-network.de> ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

July 19, 2021

Postdoc in computational neuroscience in New York - Coen-Cagli Laboratory

by Ruben Coen-Cagli

The Laboratory for Computational Neuroscience<https://sites.google.com/site/rubencoencagli> (Coen-Cagli lab) invites applications for a postdoctoral position in the Department of Systems and Computational Biology and Department of Neuroscience at Albert Einstein College of Medicine (Einstein) in the Bronx, New York City. Our lab studies how biological sensory systems interpret the surrounding environment. We study how populations of visual-cortical neurons represent and transmit visual information, and how those processes control perception. We combine theories of probabilistic neural coding, machine learning and natural image statistics, psychophysics, and neurophysiology through collaborations. The candidate is expected to perform research related to these topics, and will have the opportunity to interact closely with experimental collaborators and access to datasets including electrophysiology, imaging, and perturbations of large neural populations. Most recent publications: (2021) D. Festa et al. Nature Communications 12:3635<https://rdcu.be/cmy7M> (preprint bioRxiv<https://doi.org/10.1101/2020.06.17.142182>) (2021) D. Herrera et al. Journal of Vision 21(1):1<https://jov.arvojournals.org/article.aspx?articleid=2772139> (2021) G. Dehaene et al. PLoS Computational Biology 17(1):e1008138<https://doi.org/10.1371/journal.pcbi.1008138>. (2021) D. Herrera et al. Vision Research 187:55-65<https://doi.org/10.1016/j.visres.2021.06.007> (preprint bioRxiv<https://www.biorxiv.org/content/10.1101/2021.04.26.441524v1>) (2020) J. Vacher et al. NeurIPS 2020<https://papers.nips.cc/paper/2020/hash/fba9d88164f3e2d9109ee770223212a0-Abs…> spotlight. (2019) R. Coen-Cagli, S. S. Solomon. Journal of Neuroscience 39(37):7344<https://www.jneurosci.org/content/39/37/7344> (preprint biorxiv<https://www.biorxiv.org/content/early/2018/12/31/508838>). Applicants must have a Ph.D. in a relevant discipline, with an academic record of scientific excellence and independent research, and a keen interest in interdisciplinary approaches to biological and neural systems. Prior experience should include areas such as computational neuroscience, machine learning, statistics, or computer vision. We are particularly interested in applicants with a genuine interest in linking theoretical and computational work to quantitative analysis of neurophysiology data. Einstein offers a vibrant interdisciplinary environment, with a strong systems and computational contingent. It is located in a quiet neighborhood of the Bronx, New York. The Bronx is one of the most diverse counties in the United States, the birthplace of hip-hop, and home to a rich cultural and sports scene. Einstein is also a short subway ride from Manhattan. Information about working at the Einstein, including benefits and housing for postdocs, can be found at: https://einsteinmed.org/research/belfer-institute/ The position is available immediately, and is funded for several years, with an initial one-year appointment and expectation of extension given satisfactory performance. Salary is competitive and will be commensurate with experience. Candidates should send a single pdf file, consisting of a 1-page motivation letter, CV, and publication list to ruben.coencagli(a)gmail.com. Furthermore, candidates should organize two letters of reference, to be sent to the same e-mail address. The position is open until filled. Albert Einstein College of Medicine is an equal opportunity employer committed to hiring minorities, women, individuals with disabilities and protected veterans. The lab strives to be an open, inclusive, harassment-free environment. Ruben is an ally of Black In AI and a member of Einstein's Senate Diversity, Equity and Inclusion committee. Ruben Coen Cagli, PhD Department of Systems and Computational Biology, and Dominick Purpura Department of Neuroscience Albert Einstein College of Medicine 1300 Morris Park Ave. Price 353B Bronx, 10461. NY office: +1.718.678.1150 web: https://sites.google.com/site/rubencoencagli/<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsites.goo…>

July 14, 2021

Young post-doc neuromorphic position at Sevilla Microelectronics Institute, Spain.

by bernabe

*Young post-doc neuromorphic position at IMSE* The "Instituto de Microelectrónica de Sevilla" (IMSE) has an opening for a 3-year young post-doc position to join the Neuromorphic Group at IMSE (www.imse-cnm.csic.es/neuromorphs) financed by the Andalusian Regional Government. Gross annual salary is 30k€, which allows for a wealthy life in Sevilla, Spain. Requirements: - Official PhD graduation date must be after June 2016, although earlier dates are possible in case of leaves due to pregnancies, child birth, adoption, major accident or disease. - Deadline for candidacy submission is end of July. Prospective candidates please contact us at bernabe(a)imse-cnm.csic . - More details here: <link> <http://www2.imse-cnm.csic.es/neuromorphs/data/_uploaded/image/Post-doctoral…> The IMSE Neuromorphic Group develops research in Silicon chips and FPGAs for neuromorphic hardware with stronger focus on vision applications. We have developed several DVS (Dynamic Vision Sensor) cameras as well as cortical processing systems and spiking based learning techniques. In the last years we have strongly engaged into exploiting memristors for neuromorphic hardware and have designed full monolithic CMOS-memristive neuromorphic systems. We welcome both, candidates with more hardware profile (either analog or digital) as well as with more computing profile. The successful candidate can participate in any of the active research projects in the group (see www.imse-cnm.csic.es/neuromorphs) can also develop alternative research lines within the neuromorphic field, participate in grant proposals, and advice PhD and MSc students. Please do redistribute. Deadline is very short. Thanks. -- Prof. Bernabe Linares-Barranco, Director, Instituto de Microelectronica de Sevilla (IMSE-CNM), Sevilla, Spain www.imse-cnm.csic.es/~bernabe

July 13, 2021