September 2020 - Comp-neuro - lists.cnsorg.org

Postdoctoral position data/knowledge management for open neuroscience

by Andrew Davison

Dear colleagues, A postdoctoral position in neuroscience data curation is available within the Neuroinformatics research group of the Paris-Saclay Institute of Neuroscience, led by Dr Andrew Davison. The Human Brain Project is developing an open data repository for neuroscience, following the FAIR principles of Findability, Accessibility, Interoperability, and Reusability. The role of our group is to strongly focus on Reusability, by ensuring that all datasets have high quality, in-depth metadata so that they can be used in model building, model validation, and further analysis, and by providing tools to facilitate data re-use. The position is available immediately, and is funded until 31st March 2023, with future extensions possible. Salary depends on experience, and will be on the standard CNRS research scale. Application is through the CNRS jobs portal: https://emploi.cnrs.fr/Offres/CDD/UMR9197-ANDDAV-006/Default.aspx?lang=EN Informal inquiries may be addressed to Andrew Davison (andrew.davison(a)cnrs.fr) Activities: The successful candidate will be responsible for developing and improving metadata schemas, protocols, and curation workflows for neural activity data (including patch clamp recordings, fluorescence imaging, multi-electrode array recordings and fMRI), and for coordinating the in-depth curation process. The project will involve intensive collaboration with other researchers, curators and software developers within the research group, within the Human Brain Project, and in the wider neuroscience/neuroinformatics communities. Qualifications: Applicants should have a PhD in either neuroscience, computer science, library/information science, or a closely related discipline, or be nearing completion of PhD studies in one of these domains. Experience with experimental methods in neuroscience, semantic web technologies and/or information management approaches will be of particular benefit. Knowledge of computer programming, in particular using the Python language, would also be an advantage. Knowledge of French would be helpful but is not required, as English is the working language of the project. Context: The Paris-Saclay Institute of Neuroscience (https://neuropsi.cnrs.fr/en/institute-home/) is part of the CNRS and Université Paris-Saclay, situated in Gif-sur-Yvette in the Paris region. The Davison team (https://neuropsi.cnrs.fr/en/icn-home/andrew-davison/) develops tools and methods for data sharing, modelling and simulation in neuroscience and brain-inspired computing. This position is funded by the Human Brain Project, an EU Flagship research project, within which more than 100 universities and research institutions collaborate to build a digital research infrastructure for neuroscience, brain-inspired computing and medicine.

Sept. 25, 2020

International Symposium on Artificial Intelligence and Brain Science 2020 Online

by Kenji Doya

We are going to hold an online symposium that brings together researchers in the forefront of AI and neuroscience. All talks will be made accessible as pre-recorded movies and we will have two-hour live discussion sessions on October 10-12, 2020. Registration is free and open till September 30. Please register from the web site below. ******** International Symposium on Artificial Intelligence and Brain Science http://www.brain-ai.jp/symposium2020/ Time below is in UTC (i.e., 10pm-0am Japan, 2pm-4pm UK, 9am-11am EDT, 6am-8am PDT) <Saturday, October 10th> 13:00 Get connected 13:15 Greetings: Kenji Doya (OIST) 13:30 Discussion on Keynote: Josh Tenenbaum (MIT) 14:00 Discussion on Session 1: Deep Learning and Reinforcement Learning Chair: Jun Morimoto (ATR) Discussant: Shunichi Amari (RIKEN) Speakers: Yann LeCun (NYU, Facebook), Yutaka Matsuo (U Tokyo), Doina Precup (McGill U) David Silver (DeepMind), Masashi Sugiyama (RIKEN AIP/U Tokyo IRCN) <Sunday, October 11th> 13:00 Discussion on Session 2: World Model Learning and Inference Chair: Hiroaki Gomi (NTT) Discussant: Mitsuo Kawato (ATR) Speakers: Ila Fiete (MIT), Karl Friston (UCL), Yukie Nagai (U Tokyo IRCN) Maneesh Sahani (Gatsby Unit), Tadahiro Taniguchi (Ritsumeikan U) 14:00 Discussion on Session 3: Metacognition and Metalearning Chair: Masayuki Matsumoto (Tsukuba U) Discussant: Keiji Tanaka (RIKEN) Speakers: Matthew Botvinick (DeepMind), Ryota Kanai (ARAYA), Angela Langdon (Princeton U) Hiroyuki Nakahara (RIKEN CBS), Xiao-Jing Wang (NYU) <Monday, October 12th> 13:00 Discussion on Session 4: AI for Neuroscience and Neuromorphic Technologies Chair: Takatoshi Hikida (Osaka U) Discussant: Kunihiko Fukushima (FLSI) Speakers: Jim DiCarlo (MIT), Yukiyaku Kamitani (Kyoto U), Rosalyn Moran (King’s College London) Terry Sejnowski (Salk Institute), Hidehiko Takahashi (Tokyo MDU) 14:00 Discussion on Session 5: Social Impact and Neuro-AI Ethics Chair: Masamichi Sakagami (Tamagawa U) Speakers: Anne Churchland (UCLA), Kenji Doya (OIST), Arisa Ema (U Tokyo IFI) Hiroaki Kitano (SONY CSL), Stuart Russell (UC Berkeley) Sponsor: KAKENHI Project on Artificial Intelligence and Brain Science (http://www.brain-ai.jp) Co-sponsors: RIKEN AIP (https://aip.riken.jp/?lang=en) U Tokyo IFI (https://ifi.u-tokyo.ac.jp/en/) U Tokyo IRCN (https://ircn.jp/en/) Contact: ncus(a)oist.jp ---- Kenji Doya <doya(a)oist.jp> Neural Computation Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna, Okinawa 904-0495, Japan Phone: +81-98-966-8594; Fax: +81-98-966-2891 https://groups.oist.jp/ncu

Sept. 24, 2020

You are invited to DSP online course

by Maryam

You are invited to “DIGITAL SIGNAL PROCESSING Online Course” Dear researcher; ScienceBeam, which is a forefront technology provider of neuroscience applications, would like to take the opportunity to invite you for 10-sessions “DIGITAL SIGNAL PROCESSING Online Course” that is going to start on October 18,2020. During this course you will learn: • Discrete-time signals and systems • Z-Transform • Transform of continuous-time signals • Transform analysis of linear time invariant systems • Structures for discrete-time systems • Filter design • The discrete Fourier Transform • Computation of the discrete Fourier transform Dr. Luu Gia Thien is an experienced lecturer at Ho Chi Minh City with a Doctor of Philosophy (PhD) focused in Digital signal processing from University of Orléans, France. Registration is open until October 5th. Special discount is considered for students. You won’t want to miss this! Don’t hesitate and register from the link below: https://sciencebeam.com/luu-gia-thien-course/ If you need more information please contact us via Whatsapp or Mail: Whatsapp number: +86 133 8078 1282 Email: workshop(a)sciencebeam.com www.sciencebeam.com

Sept. 24, 2020

Software engineer position in human brain project

by Eloy Retamino

Position: Neuro-robotics Software Engineer Location: Granada, Spain At the Applied Computational Neuroscience (ACN) Group [1], headed by Prof. Eduardo Ros and part of the Computer Architecture and Technology Department at University of Granada, we are engaged in developing robot controllers from models and techniques drawn from neuroscience. Concretely we focus on the exploration of models of the cerebellum and their application in robot control. We are looking for a software engineer to contribute to our tasks in the Human Brain Project (HBP) [2]. HBP is an ambitious, 10 years long research project funded by the European Commision and targeting the exploration of human cognition and its relation to brain structures and activity. The project is developing a series of simulation platforms to facilitate different levels of research in neuroscience. At UGR we participate in the design and development of the Neuro-Robotics Platform (NRP) [3], a research infrastructure which enables embodied simulated experiments in neuroscience in which a spiking neural simulator and a physics simulator run synchronously and communicate in a closed loop fashion. As a member of our group you will contribute to the development of the NRP in the last stage of the HBP. *Your tasks* Contribute to the full cycle development of the NRP. We have some interesting challenges in this last part of the HBP and need a motivated person with experience and passion for software architecture design, physics and neural simulation and robotics. As well, the NRP is built as a production grade software product and we try to take seriously all steps in the development, including unit testing, quality assurance and continuous integration. Depending on your profile you will focus more on particular tasks suiting your experience with the possibility of learning and applying new skills. *Your profile* * Basic skills: - Demonstrable excellent Python and C/C++ programming skills - Experience and participation in collaborative software projects - Experience and passion in robotics, machine learning, neural simulation and/or physics simulation is a big plus - Good spoken and written English skills * Additional skills: - Experience in other programming languages - Version Control software (eg. GIT) - Robotics oriented middlewares and frameworks (eg. ROS) - Experience in Software Architecture design - Experience in Real Time systems design - QA and devops experience *Our offer* - You will participate in an international research project of great relevance and collaborate with top european institutions - Contract of two and a half years with a competitive salary according to experience. Offered brute salary range is 1600 - 2400 €, to be concreted according to relevant experience and skills. - Short trips within Europe as part of the project activities. - Very nice and friendly atmosphere in the group - You will be based on Granada, an exciting and cultural city at the South of Spain half an hour away from mountains, snow and the beach If you are interested in joining our group and HBP send your application to Eloy Retamino (retamino at ugr.es) including your CV and a motivation letter. Please note that only shortlisted candidates will be contacted. Also, applications without a dedicated motivation letter will not be considered. [1] http://acn.ugr.es [2] https://www.humanbrainproject.eu [3] https://neurorobotics.net

Sept. 23, 2020

International Max Planck Research Schhol NeuroCom: Call for applications

by Martin Bogdan

Call for applications: International Max Planck Research Schhol NeuroCom: Call for applications The International Max Planck Research School on Neuroscience of Communication: Function, Structure, and Plasticity (IMPRS NeuroCom) invites excellent students holding a master's degree (or equivalent) to pursue a PhD in the field of cognitive neuroscience and methods in cognitive neuroscience. The IMPRS NeuroCom is based at the Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, and Leipzig University. It also closely partners with the Max Planck Institute for Evolutionary Anthropology, Leipzig, and the Institute of Cognitive Neuroscience at University College London, UK. Deadline for applications is 15 November 2020. Interviews will take place in January 2021. Start date is flexible, but not later than autumn 2021. For more information about our graduate school please visit: http://imprs-neurocom.mpg.de/home/ . The IMPRS NeuroCom aims to recruit and educate motivated, independent, self-organised and highly talented scientists who wish to extend their knowledge and research experience in a structured 3-year PhD programme in order to pursue a successful career in cognitive neuroscience, clinical neuroscience, neurophysics, or other methods in cognitive neuroscience. Students are expected to hold an excellent master's degree (or equivalent) in a wide spectrum of potential disciplines such as cognitive neuroscience, psychology, medicine, neurobiology, linguistics, computer science, engineering, mathematics, physics, biochemistry, or related fields. The master’s degree should have been awarded by an internationally recognised university. Students nearing completion of their master’s degree are also encouraged to apply. Research experience in an area that is related to the graduate school’s scope is essential for successful candidates. Proficiency in oral and written English is crucial. The IMPRS NeuroCom offers its doctoral students outstanding research opportunities in a very international and multidisciplinary environment. It includes access to state-of-the-art cognitive and imaging neuroscience facilities, e.g. 7T MRI scanner, four 3T MRI scanners including a Connectom MRI scanner equipped with ultra- strong gradients (one of only four worldwide), a 306 channel MEG system, several TMS, TDCS, NIRS, and EEG systems. Research projects and teaching at IMPRS NeuroCom are assigned to four thematic modules (Language and Communication, Cognitive and Affective Neuroscience, Basic and Clinical Neuroscience, and Neuroimaging Physics and Signal Processing). Our faculty is very interdisciplinary and comprises more than 30 highly- renowned researchers from our participating research organisations performing high-end research related to one of the four modules. Applications will be evaluated by the IMPRS NeuroCom faculty members in two stages. Firstly, candidates will be selected for interviews based on their written applications, with a focus on academic qualifications, personal references, research experience and interests, and suitability to the programme. Secondly, interviews with the IMPRS NeuroCom faculty members will take place in January 2021. The Max Planck Society is an equal opportunity employer and is committed to increasing the number of individuals with disabilities in its workforce and therefore encourages applications from such qualified individuals. Salary is based on the guidelines of the German public sector pay scale (TVöD). With almost 600,000 inhabitants, Leipzig is the largest city in the federal state of Saxony. In more than 800 years of recorded history, Leipzig emerged as a city of classical music, trade fairs, academic education, and —recently—modern arts. With its many parks, forests, canals and lakes, Leipzig is a perfect place for recreation, sports, and leisure time, and it offers plenty of opportunities for social life. Only recently Leipzig was listed by the New York Times as one of the 52 places to go in 2020. For more information about our graduate school please visit: http://imprs-neurocom.mpg.de/home/ . -- ************************************************************************** Prof. Dr. Martin Bogdan Institut für Informatik Neuromorphe Informationsverarbeitung Universität Leipzig Augustusplatz 10 D-04109 Leipzig Germany Postadresse: PF 100920 D-04009 Leipzig Tel: (++49) 341 97 32208 Fax: (++49) 341 97 32252 E-mail: bogdan(a)informatik.uni-leipzig.de https://ti.informatik.uni-leipzig.de/ ************************************************************************** Denken Sie selbst, sonst tuen es Maschinen für Sie! 'Nihil est ab omni parte beatum' (Horaz) El problema de la humanidad es que los estúpidos están seguros de todo y los inteligentes están llenos de dudas **************************************************************************

Sept. 23, 2020

Postdoctoral Position in Cognitive Robotics at UC Irvine

by Jeffrey Krichmar

Dear Colleagues, We have an opening for a postdoctoral scholar position in the Cognitive Anteater Robotics Laboratory (CARL) at the University of California, Irvine. The position is for research projects on neurobiologically inspired models of navigation, which are to be implemented on indoor and outdoor robots. Applicants should have a strong computer science background, robotics experience, as well as an interest in neuroscience and/or cognitive science. The specific Federally funded projects include: · Cognitive Maps in Rats, Robots and Men · Advantages of Varying Navigational Abilities in Humans and Robots More information about the lab, recent publications, software, and videos can be found at: · http://www.socsci.uci.edu/~jkrichma · https://www.youtube.com/user/cognitiveroboticsuci/videos Interested candidates can find specific application requirements and the online application for this position at: · https://recruit.ap.uci.edu/JPF06408 Your cover letter should specify that you are interested in the postdoctoral position with Jeff Krichmar. If you have any questions, feel free to contact me at: jkrichma(a)uci.edu About UCI (www.uci.edu) In 1965, the University of California, Irvine was founded with a mission to catalyze the community and enhance lives through rigorous academics, cutting-edge research, and dedicated public service. Today, we draw on the unyielding spirit of our pioneering faculty, staff and students who arrived on campus with a dream to inspire change and generate new ideas. We believe that true progress is made when different perspectives come together to advance our understanding of the world around us. And we enlighten our communities and point the way to a better future. At UCI, we shine brighter. Jeff Krichmar Department of Cognitive Sciences 2328 Social & Behavioral Sciences Gateway University of California, Irvine Irvine, CA 92697-5100 jkrichma(a)uci.edu http://www.socsci.uci.edu/~jkrichma

Sept. 22, 2020

[Call for Papers] Shared Visual Representations in Human and Machine Intelligence (SVRHM) NeurIPS 2020 Workshop

by SVRHM Workshop

The goal of the Second Workshop on Shared Visual Representations in Human and Machine Intelligence (SVRHM) at NeurIPS 2020 is to discuss and disseminate relevant findings and parallels between the computational neuro/cognitive science and machine learning/artificial intelligence communities. In the past few years, machine learning tools — especially deep neural networks — have permeated the vision/cognitive/neuro science communities to become the leading computational models that describe many cognitive tasks. Huge strides are also being made in the machine learning/artificial intelligence community with biologically inspired algorithms providing large efficiency gains in both computational and learning capabilities. However, many mysteries remain with regards to the alignment of human and machine perception, and there are cases where we see divergent rather than convergent representations. To resolve such questions, this workshop aims to bring fruitful discussions between scientists and engineers with multi-disciplinary backgrounds to review the recent progress in shared visual representations in both humans and machines, and in doing so identifying road-blocks and areas of interest to further accelerate the growth of both fields. The workshop will include a series of talks and panel discussions from a diverse group of speakers from both industry and academia who will share their research at the intersection of humans and machines that pushes the field of vision forward. The aim of our Call for Papers is to bring together scientists and engineers to share their work in progress at the Poster Session that are applicable to the scope of the Workshop. For the first time this year, the 4 highest scoring papers will also be awarded an Oral Presentation entry in the program. The following areas provide a sense of suitable topics for 4-5 page paper submissions: - Biological inspiration and inductive bias in vision - Human-relevant strategies for robustness and generalization - New datasets (e.g., for comparing humans/animals and machines) - Biologically-driven self-supervision - Perceptual invariance and metamerism - Biologically-informed strategies to mitigate adversarial vulnerability - Foveation, active perception, and attention models - Intuitive physics - Biologically inspired Generative Models - Perceptual and cognitive robustness - Nuances and noise in perceptual and cognitive systems - Creative problem-solving - Differences and similarities between humans and deep neural networks - Canonical computations in biological and artificial systems - Alternative architectures for deep neural networks - Reverse engineering of the human visual system via deep neural networks We will be awarding a new *NVIDIA Titan RTX* *3080* as the *Diversity in AI Best Paper Award* and an *Oculus Quest* *2* as the *Breakthrough in Biologically-Driven Generative Models Award* respectively at the conference. Link to the workshop with additional details for the Call for Papers: https://www.svrhm.com https://www.svrhm.com/call-for-papers Link to Paper workshop submission: https://openreview.net/group?id=NeurIPS.cc/2020/Workshop/SVRHM The submission deadline is October 4th, 2020. Questions regarding the workshop should be sent to: svrhm2020(a)gmail.com Sincerely, The Organizers Arturo Deza, Joshua Peterson, Apruva Ratan Murty, Tom Griffiths The SVRHM workshop is currently sponsored by MIT’s Center from Brains, Minds and Machines (CBMM), National Science Foundation (NSF), NVIDIA, Facebook Reality Labs (Oculus) and MIT’s Quest for Intelligence.

Sept. 22, 2020

Full Prof Post in AI

by Thomas Wennekers

Dear All Please have a look at the following advertisement for a Professorship in AI at the University of Plymouth (UK). https://hrservices.plymouth.ac.uk/tlive_webrecruitment/wrd/run/ETREC107GF.o… https://www.jobs.ac.uk/job/CBH704/professor-in-artificial-intelligence-mach… Stay Well! Thomas Wennekers ________________________________ [http://www.plymouth.ac.uk/images/email_footer.gif]<http://www.plymouth.ac.uk/worldclass> This email and any files with it are confidential and intended solely for the use of the recipient to whom it is addressed. If you are not the intended recipient then copying, distribution or other use of the information contained is strictly prohibited and you should not rely on it. If you have received this email in error please let the sender know immediately and delete it from your system(s). Internet emails are not necessarily secure. While we take every care, University of Plymouth accepts no responsibility for viruses and it is your responsibility to scan emails and their attachments. University of Plymouth does not accept responsibility for any changes made after it was sent. Nothing in this email or its attachments constitutes an order for goods or services unless accompanied by an official order form.

Sept. 21, 2020

M2/PhD pisition in Optical analysis of sodium currents in the axon initial segment

by luiza filipis

Stage « Master 2 » : Optical analysis of sodium currents in the axon initial segment We propose a Master 2 (M2) stage that can be extended to a 3-4 years PhD project on the study of the sodium currents that generate the action potential in neurons. To this aim, we use cutting-edge optical techniques entirely developed by our group and NEURON modeling. The stage will take place at the Laboratoire Interdisciplinaire de Physique in the campus of the University of Grenoble. This stage, of 4-6 months, is available for students at the final year of the University to start in February or March 2021.We will offer this opportunity to a brilliant student motivated to begin a career in scientific research. A PhD scholarship is already available starting in October 2021 to apply the research of the M2 project to investigate mutations of the sodium channel Nav1.2 associated with neurological diseases. For an overview of the activity and of the achievements of our group, visit the website: http://marco-canepari.wix.com/neuron-imaging-team Applications of students, with a very high academic profile based on the notes obtained the entire university history, from different backgrounds (physics, biology, medicine or chemistry) will be equally considered. The application for the stage, in English or French, must be sent to: marco.canepari(a)univ-grenoble-alpes.fr and must include: • A motivation letter • A CV with contact details • The detailed marks of the entire academic history • (Optional) a reference letter from an academic who knows well the student The deadline for the application is October 10th 2020, but the call for applications will close before if a suitable candidate is found. -- Luiza Filipis,PhD Equipe MOTIV Laboratoire Interdisciplinaire de Physique (LIPhy), Université Grenoble Alpes et CNRS UMR 5588, Bat. E45, 140 avenue de la physique, Domaine univ., 38402 St Martin d'Hères cedex, FRANCE 33(0)476514731, Fax +33(0)476635495. luiza.filipis(a)univ-grenoble-alpes.fr http://marco-canepari.wix.com/neuron-imaging-team

Sept. 21, 2020

Announcement: 2nd Elephant User Workshop for Reproducible Data Analysis in Electrophysiology, Nov 17-19, 2020

by Michael Denker

***2nd Elephant User Workshop*** --Accelerate Structured and Reproducible Data Analysis in Electrophysiology-- Virtual Event Nov 17-19, 2020 Summary: This event delves into challenges in the reproducibility of neuroscience workflows dealing with classical electrophysiological activity data, such as spiking data or local field potentials, from experiment or simulation. The training will cover the complete cycle from generating structured and consistent data and metadata, accessing the data, pre-processing, setting up analysis workflows, up to the tracking of the provenance of the analysis results. In this context, the e-infrastructure services of EBRAINS offer a mature data, software and compute services ecosystem with community-driven tools developed in the framework of the Human Brain Project. In the first part of the workshop, participants will be trained in the use of tools covering the following topics: * reading and manipulating electrophysiology data in Python using Neo [1] * analysis of such data using Elephant [2] * best practices for integrating metadata into your workflow to aid the analysis process * best practices for structuring analysis results * tracking data analysis pipelines using the HBP Knowledge Graph [3] * collaboration and sharing documents using the HBP Collaboratory [4] In the second part of the workshop, participants will work together with a tutor in small groups, on their own data and on particular personal interests in the scope of the workshop. To this end, participants are asked to provide a small abstract describing the data set they would like to bring and work on (contents of the dataset, data format, data size...) and the topic they are interested in. The latter may, for example, be related to: annotating the dataset with metadata for collaboration and sharing, working with the dataset in the Neo framework, or performing a certain kind of analysis with the data set. The goal of each group is to get started addressing the topic, identify solutions together with the tutors, and implement a first prototype of the required functionality. For more information and registration, check out: https://www.humanbrainproject.eu/en/education/participatecollaborate/infras… Organizers: Andrew Davison | French National Centre for Scientific Research, France Michael Denker | Forschungszentrum Jülich, Germany Martina Schmalholz | Heidelberg University, Germany References: [1] Neo, https://neo.readthedocs.io [2] Elephant, https://elephant.readthedocs.io [3] HBP Knowledge Graph, https://kg.ebrains.eu [4] HBP Collaboratory, https://wiki.humanbrainproject.eu -- Dr. Michael Denker Institute of Neuroscience and Medicine (INM-6) Tel: +49 2461 61-9471 Computational and Systems Neuroscience & Fax: +49 2461 61-9460 Institute for Advanced Simulation (IAS-6) Theoretical Neurosciencewww.csn.fz-juelich.de Jülich Research Centre and JARA 52425 Jülich, Germany ---------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt ----------------------------------------------------------------------

Sept. 21, 2020