March 2020 - Comp-neuro - lists.cnsorg.org

MBL Methods in Computational Neuroscience Course - deadline March 16

by Stephen A. Baccus

Applications are open for the Methods in Computational Neuroscience course at the Marine Biology Laboratory in Woods Hole, MA. The course will run from August 2 to August 28, 2020, and the online application form can be found at: https://ws2.mbl.edu/studentapp/studentapp.asp?courseid=MCN The course application deadline is *March 16*. The course covers a range of topics in computational neuroscience including neuronal biophysics, neural coding & information processing, circuit dynamics, learning & memory, motor control, and cognitive processing & disease. In addition, numerous tutorials and problem sets will cover a broad range of computational and mathematical modeling methods. The course strongly emphasizes the collaboration between theory and experiment in solving neuroscience problems, and lectures will be given by a mixture of theorists and experimentalists. The final weeks of the course are primarily reserved for work on projects that students design in collaboration with the resident faculty. Further information can be found on the MCN website: http://www.mbl.edu/mcn/ 2020 Course Directors: Stephen Baccus, Stanford University Xiao Jing Wang, New York University 2020 Faculty: Larry Abbott, Columbia University Emery Brown, MIT Randy Buckner, Harvard University Dmitri Chklovskii, Simons Institute Claudia Clopath, Imperial College London Shaul Druckmann, Stanford University Uri Eden, Boston University Bard Ermentrout, U. of Pittsburgh Adrienne Fairhall, U. of Washington James Fitzgerald, Janelia Res., HHMI Loren Frank, UCSF Michale Fee, MIT Stefano Fusi, Columbia University Surya Ganguli, Stanford University Juliana Gjorgjieva, Max Planck Institute Mark Goldman, UC Davis Nancy Kopell, Boston University Eve Marder, Brandeis University Bartlett Mel, Univ. of Southern California Liam Paninski, Columbia, U. David Redish, U. Minnesota Robb Rutledge, Yale University Terry Sejnowski, Salk Institute Mike Shadlen, Columbia U. Reza Shadmehr, Johns Hopkins Univ. Sara Solla, Northwestern University Haim Sompolinsky, Hebrew University Nelson Spruston, Janelia Research Campus Josh Tenenbaum, MIT Nao Uchida, Harvard University David Van Essen, Washington University Greg Wayne, DeepMind

March 9, 2020

2nd CfP, Deadline Extension, 29th International Conference on Artificial Neural Networks ICANN 2020, Sept 15-18, Bratislava, SK

by Paolo Masulli ENNS

29th International Conference on Artificial Neural Networks ICANN 2020 https://e-nns.org/icann2020 *Bratislava, Slovakia** **15 - 18 September 2020* ============================================================ *2nd Call For Papers, Submission Deadline Extended: 31 March * The International Conference on Artificial Neural Networks (ICANN) is the annual flagship conference of the European Neural Network Society (ENNS). In 2020 the Faculty of Mathematics, Physics and Informatics (FMPI), Comenius University in Bratislava, together with the Slovak Society for Cognitive Science, organize the 29th ICANN Conference from the 15th to the 18th of September 2020 in Bratislava, Slovakia. *CONFERENCE TOPICS* ICANN 2020 is a dual-track conference featuring tracks in Brain Inspired Computing and Machine Learning and Artificial Neural Networks, with strong cross-disciplinary interactions and applications. All research fields dealing with Neural Networks will be present at the conference. A non-exhaustive list of topics includes: Machine Learning: Deep Learning, Neural Network Theory, Neural Network Models, Graphical Models, Bayesian Networks, Kernel Methods, Generative Models, Information Theoretic Learning, Reinforcement Learning, Relational Learning, Dynamical Models, Recurrent Networks. Brain Inspired Computing: Cognitive models, Computational Neuroscience, Self-organisation, Reinforcement Learning, Neural Control and Planning, Hybrid Neural-Symbolic Architectures, Neural Dynamics. Neural Applications for: Bioinformatics, Biomedicine, Intelligent Robotics, Neurorobotics, Language Processing, Image Processing, Sensor Fusion, Pattern Recognition, Data Mining, Neural Agents, Brain-Computer Interaction, Neural Hardware, Evolutionary Neural Networks. *CALL FOR CONTRIBUTED SCIENTIFIC COMMUNICATIONS* All scientific communications presented at ICANN 2020 will be reviewed and scientifically evaluated by a panel of experts. The conference will feature two categories of communications: - oral communications (15'+5') - poster communications Call for Special Sessions: ICANN2020 organizers cordially invite internationally recognised experts to organise Special sessions and workshops within the general scope of the conference. Special Session Proposal request should be sent to icann2020(a)fmph.uniba.sk Call for Papers: Authors willing to present original contributions in either oral or poster category may submit: - A *full paper* of about 10-12 pages to be published in Springer-Verlag Lecture Notes in Computer Science (LNCS) series with individual DOI. - An *extended abstract* of suggested 4 pages to be published in Springer-Verlag Lecture Notes in Computer Science (LNCS) series, without indexing. The number of oral slots is limited. In case the number of requested oral presentations is larger than the available slots the ICANN scientific committee will select which papers will be reassigned to a poster session. This selection will be based on the coherence of the programme and is totally independent of the category of submission. Submission of communications will be online. More details will be made available soon on the conference website: https://e-nns.org/icann2020/ *IMPORTANT DATES* *Deadline for full papers and extended abstracts submission: EXTENDED to 31 March 2020* Notification of acceptance: 31 May 2020 Camera-ready paper upload and registration opening: 15 June 2020 Deadline for early registration at discount rate: 15 June 2020 Conference dates: 15-18 September 2020 *BEST PAPER AWARDS* ENNS will sponsor a maximum of four best paper awards, two in the Brain Inspired Computing track (one poster and one oral communication) and, analogously, two in the Machine Learning Research track. All awards will be presented during the final ceremony. *TRAVEL GRANTS* The European Neural Network Society sponsors a number of Student Travel Grants covering part of the costs for attending ICANN. Details will be provided on the conference website. *ORGANISATION* General Chairs: Igor Farkaš (FMPI, Comenius University in Bratislava, Slovakia) Ľubica Beňušková (FMPI, Comenius University in Bratislava, Slovakia) Organising Committee Chairs: Juraj Bánovský (FMPI, Comenius University in Bratislava, Slovakia), Alessandra Lintas (ENNS Lausanne, Switzerland) Honorary Chairs: Stefan Wermter, University in Hamburg, Germany (ENNS President) Věra Kůrková, Czech Academy of Sciences, Prague, Czechia (past ENNS President) Publicity Chair: Kristína Malinovská (FMPI, Comenius University in Bratislava, Slovakia) Communication Chair: Paolo Masulli (Technical University of Denmark, ENNS)

March 9, 2020

Bilbao Neuroscience and Computational Biology workshop (BioNCB'20): 27th-29th May 2020

by Serafim Rodrigues

Dear all, We are happy to announce the 1st Bilbao Neuroscience and Computational Biology workshop (BioNCB'20) which will take place in Bilbao (Spain) at the Basque Center for Applied Mathematics (BCAM) from the 27th to the 29th May 2020. This 3-day international workshop aims at presenting recent exciting advances and challenges in Neuroscience and Computational Biology: Mathematical modelling, Data Analysis and Experiments. Confirmed speakers are leading experts, which will stimulate discussions at the interface of the aforementioned subjects. *—**—**—**—**—**—**—**—* *Plenary speakers* *—**—**—**—**—**—**—**—* Karl Friston (University College London, UK) Misha Tsodyks (Institute for Advanced Studies, Princeton, USA) Alain Destexhe (UNIC Lab, CNRS, France) Hugues Berry (Inria Rhône Alpes, France) Maria V Sanchez-Vives (IDIBAPS, Barcelona, Spain) *—**—**—**—**—**—**—**—* *Invited speakers* *—**—**—**—**—**—**—**—* Daniele Avitabile (VU Amsterdam, Netherlands) Paolo Bonifazi (Biocruces-Bizkaia Health Research Institute, Barakaldo, Spain) Jesus M Cortes (Biocruces-Bizkaia Health Research Institute, Barakaldo, Spain) Anda Degeratu (Universität Stuttgart, Germany) Juan Manuel Encinas (Achucarro - The Basque Center for Neuroscience, Leioa, Spain) Héctor García Martin (UC Berkeley, USA) Jordi Garcia-Ojalvo (Universitat Pompeu Fabra, Barcelona, Spain) Toni Guillamon (Universitat Politècnica de Catalunya, Barcelona, Spain) Mazahir T Hasan (Achucarro - The Basque Center for Neuroscience, Leioa, Spain) Mauricio Rincón Bonilla (BCAM, Bilbao, Spain) Nathalie Rouach (Collège de France, Paris, France) Susanne Schreiber (Humboldt-Universität zu Berlin, Germany) Antonio E Teruel (Universitat de les Illes Baleares, Palma de Mallorca, Spain) Yulia Timofeeva (University of Warwick, UK) Pablo Varona (Universidad Autónoma de Madrid, Spain) *—**—**—**—**—**—**—**—**—**—**—**—**—**—* *Call for poster presentations* *—**—**—**—**—**—**—**—**—**—**—**—**—**—* We are welcoming contributions for poster presentation. We will have two 1-hour poster sessions on the first and second morning of the meeting. This will give opportunities to students, postdocs and junior colleagues to present their work, get good exposure to foster discussions early on in the meeting. *Registration and submission deadline for posters: 31 March 2020* *For more informations about poster submission and registration*, please visit the workshop's webpage: https://wp.bcamath.org/bioncb20/ We are looking forward to your contributions and to seeing you in Bilbao! *The organizing committee,* Serafim Rodrigues (BCAM), Mathieu Desroches (Inria), Elena Akhmatskaia (BCAM), Andrea Guidolin (BCAM) and Jone Uria Albizuri (BCAM).

March 7, 2020

Research assistant position in the Gershman lab at Harvard

by Sam Gershman

The Computational Cognitive Neuroscience Lab at Harvard University, led by Professor Sam Gershman, is seeking a full-time Research Assistant to work on a series of projects on longitudinal computational phenotyping. The research assistant will gain experience with all aspects of the research process, which could serve as a launch pad to graduate studies. More details here: https://sjobs.brassring.com/TGnewUI/Search/Home/Home?partnerid=25240&siteid… Please note that due to regulations only U.S. citizens or permanent residents can be hired for this position.

March 5, 2020

Coordinator position for the Helmhotz Metadata Collaboration (HMC)

by Michael Denker

Forschungszentrum Jülich is looking for a Scientific Coordinator who will participate in setting up and coordinate the Hub Information of the Helmhotz Metadata Collaboration (HMC) at Forschungszentrum Jülich. The aim of the HMC Platform, which is currently being set up, is to develop and establish novel concepts and services to ensure that research data is enriched with metadata making it accessible and reusable for future applications. At Forschungszentrum Jülich, a Metadata Hub will be established as part of HMC, which is anchored in the Helmholtz Association`s research field of Information. More details regarding the position and the application procedure can be found here: https://www.fz-juelich.de/SharedDocs/Stellenangebote/_common/dna/2020-060-E… Application deadline is March 22 2020. ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

March 5, 2020

postdoc position at Jagiellonian University in Kraków

by Daniel Wójcik

A postdoctoral position is available at Jagiellonian University in Krakow for up to 36 months starting preferably on May 1st. The postdoc will work in one of two projects. The goal of the first is to develop point process models of neuronal spiking activity that could effectively describe adaptive processes including learning but also different types of modulation (e.g. brain-stem modulatory effects on visual information processing, etc.). The postdoc will develop abstract models, estimation methods, implement them in software, and use developed software and methods to analyze data from experimental partners after testing them on simulated data. The goal of the second project is building reinforcement learning models of behavior and development of estimation methods and tools. The focus is on rodent behavior in intelligent cages, such as IntelliCage or Eco-HAB, and taking into account individual and group learning aspects. The postdoc will develop abstract models, estimation methods, implement them in software, and use developed software and methods to analyze data from experimental partners after testing them on simulated data. The position is open within the group led by prof. Daniel Wójcik. The position is based in Cracow within the bioNN project but the researcher will also be a member of the distributed Warsaw-Cracow Neuroinflab, and will be expected to participate regularly in meetings in Warsaw every few weeks. More details: https://euraxess.ec.europa.eu/jobs/496088 http://bionn.matinf.uj.edu.pl/ Daniel Wójcik -- Prof. Daniel K. Wojcik Laboratory of Neuroinformatics, Head Graduate School, Head Nencki Institute of Experimental Biology 3 Pasteur St, 02-093 Warsaw, Poland tel: (+48 22) 5892348 fax: (+48 22) 8225342 skype: danek8317 http://neuroinflab.pl/ http://orcid.org/0000-0003-0812-9872

March 5, 2020

Extended deadline: 5th Workshop on Molecular Communications in Tampere, Finland, on May, 18th-20th, 2020

by Kerstin Lenk

Dear Colleagues, The *abstract submission deadline* for the 5th Workshop on Molecular Communications in Tampere, Finland, has been *extended *to the 15th of March of 2020. Therefore, we would like to invite you to submit contributions within the following general areas: • Synthetic Biology • Systems Biology • Pharmacology • Inter/Intra Cellular Communication • Chemical Networks • Communication Engineering Details on the Call for Papers can be found on the Workshop website https://molecularcommunications.eu. Please, extend this invitation to any colleagues of yours who may be interested. Best Regards, Maximilian Schäfer and Mauro Femminella MolCom 2020 TPC Co-Chairs PS: We apologize for possible multiple postings, which we made all our efforts to avoid

March 5, 2020

Faculty and senior postdoc positions at University of Tokyo

by Mingbo Cai

How does human intelligence arise? Can we create artificial intelligence to extend or complement human intelligence? The International Research Center for Neurointelligence (IRCN) at The University of Tokyo was recently launched to solve these challenges under the World Premier International (WPI) Research Initiative of Japan. International Research Center for Neurointelligence, The University of Tokyo, Japan, has now open positions for highly motivated Senior Postdoctoral Research Fellows and Open-Rank Faculty (Assistant, Associate, and Full Professor). You will have access to our world-class technologies and facilities, extensive global collaboration networks, and vibrant international environment. In addition to independent research, successful candidates will endeavor to bridge disciplines as key computation members in our highly collaborative Team Science ecosystem. Current research themes include attention, prediction, intrinsic activity, social intelligence, autism, psychosis risk, multi-scale imaging, and critical period mechanisms. Senior postdoctoral fellows will have scientific independence and a career path to positions in industry and academia. We strongly encourage applications from international and female candidates to further enhance our diverse environment. The official language of IRCN is English and bilingual support is provided for life in cosmopolitan Tokyo. https://ircn.jp/en/careers/20200225-projectprofessor Mingbo Cai International Research Center for Neurointelligence University of Tokyo

March 5, 2020

Two Post-Docs position @University of Padova on "Personalized whole brain models for neuroscience: inference and validation"

by Samir Suweis

TWO OPENINGS FOR POST-DOC POSITIONS Two post-doc calls have been opened (see details below) in the context the following project funded by the Department of Information Engineering, University of Padova: Title of the project Personalized whole brain models for neuroscience: inference and validation Abstract of the project: Contemporary neuroscience has embraced network science to study the complex and self- organized structure of the human brain, with the promise of addressing key societal issues such as neural degeneration and treatment of neurological and psychiatric diseases and damages. These objectives will be pursued in this highly interdisciplinary project following a data-driven model based approach: our final goal is to design novel algorithmic solutions for data-driven inference of whole-brain mesoscale dynamical models as well as to develop and validate (or invalidate) models based on both data driven as well as methodological studies. Ideally, these models should provide solid grounds to develop (i) novel individual-level features for predicting cognitive and behavioral deficits originated by brain lesions or neuro- degeneration and (ii) simulation tools for designing personalized treatments such as stimulation. Team: The post-docs will work in an interdisciplinary team composed of Engineers, Psychologists, Neurologists and Physicists Salary: Approx. 25Keuro/year gross Duration: 20 months (can possibly be extended to 32 months) Opening date: approx. March 2nd, 2020 Closing date: approx. April 2nd, 2020 Link PostDoc#1: https://www.dei.unipd.it/node/26525 Link PostDoc#2: https://www.dei.unipd.it/node/26510 Contacts: Prof. Alessandro Chiuso Department of Information Engineering University of Padova chiuso(a)dei.unipd.it Prof. Alessandra Bertoldo Department of Information Engineering University of Padova bertoldo(a)dei.unipd.it POST DOCTORAL POSITION # 1 TITLE: Development and analysis of novel models and methods for effective connectivity in whole-brain network models Activity: The Post-Doc will develop and refine algorithms for estimation of effective connectivity models from neuroimaging data (fMRI) providing also an in-depth comparison between different classes of methodologies (e.g. DCM-like models and “Granger’’ causality type models). He/she will also actively collaborate in the validation studies and work in close interaction with the external collaborators (neurologists, neuroscientists, physicists). Profile: The ideal candidate should have a recent PhD in engineering, applied mathematics/physics, statistics, computer science, and related fields. He/she must have demonstrated experience in complex system modeling and advanced analytic techniques (e.g. multivariate approaches, machine learning, graph theory etc.). Strong analytical/mathematical skills are a requirement. Experience in one or more areas of neuroimaging will be plus. Programming skills (C, C++, Python, Matlab) are not a prerequisite, but a clear advantage. Moreover, the candidate must be highly motivated and creative individual with the ability to work in a dynamic, multi-disciplinary research environment and be willing to interact with both experimental and theoretical neuroscientists. POST DOCTORAL POSITION # 2 TITLE: Analysis and validation of novel models and methods for effective connectivity in whole-brain network models Activity: The activities will be mainly related to the preprocessing and analysis of neuroimaging data as well as validation, via systematic statistical testing, of effective connectivity models on animal data as well as on stroke patients. In particular, the post-doc will be involved in the design of experiments and conduct human neuroimaging research on normal brain organization and changes in network architecture among patients with stroke, with an emphasis on effective and functional connectivity network mapping. The post-doc will compare the human results with those he/she will obtain working with whole- brain rs-fMRI signals from the animal model. Profile: The position is open to recent PhDs in applied mathematics/physics, computer science, engineering, statistics and related fields, with demonstrated ability to conduct high impact research. The successful applicant will have expertise in anatomical MRI, dMRI and/or rs-fMRI analysis, familiarity with control theory and system identification, time-series analysis, statistics and graph theoretic and network modeling. Expertise in vivo electrophysiology signals analysis is also desirable. Experience with neuroimaging analysis programs (ANTs, FSL, SPM, FreeSurfer or other relevant programs), and strong knowledge on programming (e.g. good command of scripting, Python and Matlab) is also expected. Clearly, the successful candidate will be part of a diverse and multidisciplinary group including engineers of different specialties, neuroscientists, physicists, therefore a strong attitude and flexibility in team-working are required to foster cross-breeding and fertilization among the different disciplines involved in the project.

March 4, 2020

Google Summer of Code: open source models of cortical networks

by Gleeson, Padraig

--Apologies for cross-posting-- Google Summer of Code<https://summerofcode.withgoogle.com/> is an initiative to encourage students to contribute to open source software projects. Generous stipends are provided for successful applicants to work on these projects for a number of months over the summer. The INCF<http://incf.org/> has been a GSoC mentoring organisation for the past number of years, and has helped link up students with mentors to advance various projects in the wider neuroinformatics and computational neuroscience areas. The Open Source Brain initiative<http://www.opensourcebrain.org> is encouraging students to apply to be part of this. The successful candidate for our our proposal<https://neurostars.org/t/gsoc-2020-project-idea-10-open-source-cross-simula…> will take published models of cells and networks from the cortex and convert them into open, standardised formats (e.g. NeuroML and PyNN) and share them on the OSB platform as a resource for the wider community. These can be models where code is available in simulator specific formats on ModelDB, or classic models from the literature which would benefit from curating/updating/documenting. Making models available in these formats will allow them to be used & tested across multiple simulators, make the physiological properties of the models more accessible and facilitate reuse of model components. This opportunity is particularly relevant for Masters & PhD students currently working in model development/analysis in computational neuroscience. Many students are already reusing/converting/updating existing models as part of their work and this is a great opportunity to get paid extra to do this! Closing date for student applications: 31st March 2020 Period of working on projects: 18 May - 17 August 2020 More information on the cortical modelling project can be found here<https://neurostars.org/t/gsoc-2020-project-idea-10-open-source-cross-simula…>. There is another OSB project related to sharing data in Neurodata Without Borders format here<https://neurostars.org/t/gsoc-2020-project-idea-31-osb-conversion-of-public…>. Multiple other project ideas from other neuroinformatics and computational neuroscience initiatives (including The Virtual Brain, Brian, LORIS, GeNN, SciUnit, PyNN, OpenWorm) can be found on the INCF project ideas page<https://neurostars.org/c/gsoc>. ----------------------------------------------------- Padraig Gleeson Room 321, Anatomy Building Department of Neuroscience, Physiology& Pharmacology University College London Gower Street London WC1E 6BT United Kingdom +44 207 679 3214 p.gleeson(a)ucl.ac.uk<mailto:p.gleeson@ucl.ac.uk> -----------------------------------------------------

March 4, 2020