Comp-neuro

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comp-neuro@lists.cnsorg.org

July 2019

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PhD Position in Computational Neuroscience and Neuroimaging at Jülich Research Centre (Germany)

by Oleksandr Popovych

PhD Position in Computational Neuroscience and Neuroimaging at Jülich Research Centre and University of Düsseldorf, Germany One PhD position is available in computational neuroscience with a focus on mathematical modeling of brain dynamics based on neuroimaging data in the lab of Prof. Dr. Simon Eickhoff at Jülich Research Centre and University of Düsseldorf in Germany. The PhD candidate will work on projects involving large-scale dynamical brain models derived from multimodal neuroimaging data (structural, functional & diffusion magnetic resonance imaging, MRI) combined with numerical simulations and analysis of model dynamics and parameter space. We are specifically looking for candidates with training in applied mathematics/computational neuroscience or related fields and experience in programming and numerical simulation of neuronal models/nonlinear dynamical systems. The candidate will be responsible for preparation of necessary neuroimaging data, derivation, validation and analytical and numerical investigation of the whole-brain dynamical models, and writing manuscripts for publication. The position provides an opportunity to work in an interdisciplinary environment and training in mathematical modeling of neuroimaging data and methods for data analysis. More details on the lab: http://www.fz-juelich.de/inm/inm-7/EN/ Requirements: Master’s degree (or equivalent) in Applied Mathematics, Physics, Engineering, Computer Science or a related field. Experience with programming languages such as C/C++/CUDA/Python/Matlab/R. Familiarity with numerical simulations of nonlinear dynamical systems/differential equations/neuronal models. Experience with parallel programming and simulations on high-performance computational clusters will be a plus. Experience with neuroimaging data processing and analysis and related software packages (FSL, SPM, MRtrix, etc.) will be of advantage. Strong English-language writing & communication skills. To apply: Please send your CV, names of two referees, one-page letter of motivation (emphasizing any related work/projects), up to 3 representative publications and/or examples of program code, if available, to Dr. Oleksandr Popovych via email (o.popovych(a)fz-juelich.de) Please mention “PhD application CNS” in the subject. -- --------------------------------------- PD Dr. Oleksandr Popovych Institute of Neuroscience and Medicine (INM-7: Brain and Behaviour) Research Centre Jülich 52425 Jülich, Germany Tel: +49 2461 61 3332 eMail: o.popovych(a)fz-juelich.de http://www.fz-juelich.de/inm/inm-7/EN/Home/home_node.html ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

July 3, 2019

Open Source Brain workshop 9-11 Sept 2019 & new publication

by Gleeson, Padraig

[Apologies if you receive multiple copies of this due to cross-posting] The 2019 Open Source Brain workshop will be held in Alghero, Sardinia on 9-11th September 2019. Full details: http://www.opensourcebrain.org/docs/Help/Meetings#OSB_2019 Open Source Brain (http://www.opensourcebrain.org) is a platform for sharing and collaboratively developing models in computational neuroscience. Models of cells and circuits in standardised formats can be visualised, analysed and simulated through a standard web browser. A key driver for the development of this technology is to improve accessibility, scientific scrutiny, reproducibility and reuse of models of brain function. The platform is described in a recent paper in Neuron: https://www.cell.com/neuron/fulltext/S0896-6273(19)30444-1 The 2019 OSB Workshop will highlight the latest features of OSB and engage current and future users of the platform through invited talks, posters, hands on demonstrations, and user presentations. Since we are substantially expanding the functionality of Open Source Brain to enable sharing of standardized experimental data used to build and test the models of neurons and circuits, this year’s meeting will have two key themes: 1) Accessible sharing of cellular neuroscience data Through support for the Neurodata Without Borders (NWB) format, OSB will facilitate sharing of multiple types of experimental data used to constrain computational models, including electrophysiological recordings, Ca2+ fluorescence imaging, 2D, 3D and 4D imaging and behavioural data. Challenges, requirements and solutions to data standardization will be discussed. 2) Modelling cortical structures across scales Cortical networks are modelled at many scales from abstract representations of interacting populations (neural masses) to networks of biophysically and morphologically detailed cell models. NeuroML is being expanded to cover a greater range of these models, which will allow them to be shared and simulated on OSB, facilitating comparison of models and ideas between researchers. This ongoing work is taking place as part of the SIG on Standardised Representations of Network Structures<https://www.incf.org/activities/standards-and-best-practices/incf-special-i…>. Registration The registration fee for the meeting for 3 days will be £130. This will help cover organisation and speaker costs, meeting room hire, lunch, tea and coffee for 3 days and one workshop dinner. Please register here<https://onlinestore.ucl.ac.uk/conferences-and-events/faculty-of-life-scienc…>. Registration closes on 1st September 2019. Confirmed speakers Yazan Billeh (Allen Institute, USA) Matteo Cantarelli (MetaCell Ltd) Alex Cayco Gajic (UCL, UK & École Normale Supérieure, France) Sharon Crook (Arizona State University, USA) Jeffrey S. Diamond (NINDS, USA) Matt Earnshaw (University College London, UK) Jan Fousek (Aix Marseille Université, France) Padraig Gleeson (University College London, UK) Boris Marin (Universidade Federal do ABC, Brazil) Diego Restrepo (University of Colorado, USA) Simon Schultz (Imperial College, UK) Angus Silver (University College London, UK) Sacha van Albada (Jülich Research Centre, Germany) For more details please see: http://www.opensourcebrain.org/docs/Help/Meetings#OSB_2019 The OSB 2019 organising committee Padraig Gleeson Matt Earnshaw Angus Silver

July 2, 2019