October 2019 - Comp-neuro - lists.cnsorg.org

Open-Rank Position: Bilkent University

by Hulusi Kafaligonul

*Open-Rank Position, Aysel Sabuncu Brain Research Center and National Magnetic Resonance Research Center (UMRAM) at Bilkent University* Bilkent University invites faculty applications (rank open) for a position in the Aysel Sabuncu Brain Research Center and National Magnetic Resonance Research Center (UMRAM). The strategic plan includes an expansion of research related to molecular and cellular neuroscience. Accordingly, we seek applications from promising or established scholars who have worked in this or a related field, and who integrates or plans to integrate neuroimaging in their studies. The newly built research center has spacious state-of-the-art molecular and cellular laboratories, in addition to animal research facilities. An Interdisciplinary Graduate Program in Neuroscience offers Master's and PhD programs that was opened five years ago. Finally, there are also human psychophysics, EEG laboratories and two MRI scanners (3T and 1.5T) with plans to purchase a high field scanner (7T) for animal studies. Bilkent is located in Ankara, Turkey's metropolitan capital with daily direct flights to Istanbul and other major European cities. Bilkent University also provides faculty members and their families with free housing and access to private health insurance. Qualifications and Responsibilities: Applicants should have a PhD in neuroscience or related discipline, and should have an excellent publication record (requirements vary with rank). A demonstrated ability or the potential to secure external research funding will be a strong advantage. Faculty members are expected to maintain productive research programs. Successful applicants will teach during the Fall and Spring semesters with no teaching requirement during summer, and supervise PhD and Master's students. Appointment: This full-time appointment will begin in September 2020 (negotiable). Salary will be internationally competitive and commensurate with qualifications and experience. *Application Procedure* Applicants should submit 1. a cover letter; 2. CV; 3. research statement; 4. teaching statement; 5. pdf copies of 3 representative publications; and 6. contact information for 3-5 professional references. Review of applications will commence on November 30, 2019 and continue until the position is filled. Inquiries about the university should be directed to Hulusi Kafaligonul athulusi(a)bilkent.edu.tr <mailto:hulusi@bilkent.edu.tr>or +90 312 290 3016.To apply please go to the following link: https://stars.bilkent.edu.tr/staffapp/UMRAM2019For more information, please visit the following websites: beyin.bilkent.edu.tr <http://beyin.bilkent.edu.tr/> umram.bilkent.edu.tr <http://umram.bilkent.edu.tr/> neuro.bilkent.edu.tr <http://neuro.bilkent.edu.tr/> bilkent.edu.tr <http://bilkent.edu.tr/> -- Hulusi Kafaligonul Assistant Professor National Magnetic Resonance Research Center Interdisciplinary Neuroscience Program Bilkent University, Ankara, Turkey http://hulusi.bilkent.edu.tr/ -- Bu e-posta virüslere karşı Avast antivirüs yazılımı tarafından kontrol edilmiştir. https://www.avast.com/antivirus

Oct. 14, 2019

PhD and Postdoc positions in Frankfurt, Germany

by Martin Vinck

Apologies for cross-posting: The laboratory of Dr. Martin Vinck at the Ernst Struengmann Institute for Neuroscience in Cooperation with Max Planck Society <http://www.esi-frankfurt.de/esi-frankfurt/>is seeking multiple Postdocs and PhDs for experimental projects in marmoset (ideally starting early spring of 2019). We will study predictive processing in the visual system, test new models of object recognition, and the contribution of different cell types to neural coding. Data will be collected with chronic, high-density silicon probes including wireless recordings during (freely moving) natural behavior (using the eCube white matter system). A part of the project involves optogenetics. Additional training in high-density electrophysiology can be acquired by participation in projects in mice. You will work closely together with computational scientists in our laboratory working on deep learning and state space analyses. The main focus of the project is the interpretation of neural activity from artificial neural networks (in particular recurrent and predictive neural networks) and the study of population coding. We are looking for candidates with a biology or medicine background and experience in behavioral training and electrophysiology. Frankfurt is an internationally oriented city with many neuroscience institutes in the neighbourhood, e.g. the Max Planck Institute for Brain Research <http://brain.mpg.de/home.html>, the FIAS <https://fias.institute/>, the Interdisciplinary Center for Neuroscience <https://www.izn-frankfurt.de/en/>, and the institute for Empirical Aesthetics. Interested candidates are invited to send their application materials in electronic form (PDF format) to martin.vinck(a)esi-frankfurt.de. The first deadline for applications is 7 of November 2019. Applications should contain a letter of intent, a detailed curriculum vitae, lists of university courses completed with marks obtained, and the names of at least two scientists who can give references (or at least two reference letters). The advertisement will be valid until positions are filled. Positions are not yet filled.

Oct. 12, 2019

PhD studentship in Bristol

by Cian O'Donnell

We are looking for a computational neuroscience PhD student to start September 2020 to do computational modelling of synaptic plasticity in neurodevelopmental brain disorders. You would mainly be based in the University of Bristol in the group of Cian O’Donnell, and co-supervised by Krasi Tsaneva-Atanasova (University of Exeter) and Jeremy Hall (Cardiff University). Your background can be flexible but training in neuroscience, mathematical modelling and/or scientific programming would be beneficial. Usually we use Julia, Python or Matlab programming languages. Project outline: Autism and Schizophrenia, two of the most common neurodevelopmental disorders, have been linked with ~100 different genetic mutations each. Many of the implicated genes code for proteins involved in synaptic plasticity. It may be that these distinct mutations converge to give similar alterations to the “rules of synaptic plasticity”, and therefore affect learning and development. L-type calcium channel are one notable example, frequently popping up in risk gene lists and known to play crucial roles in synaptic plasticity. In this PhD project you would extend our existing biophysical models of calcium signalling at rodent hippocampal synapses to try to figure out the role of dysfunctional L-type calcium ion channels in these brain disorders. A more detailed project description can be found here: https://www.gw4biomed.ac.uk/wp-content/uploads/sites/9/2019/09/Computationa… The project will involve numerical simulations with Cian O’Donnell (Bristol), mathematical analysis of reduced models with Krasi Tsaneva-Atanasova (Exeter), using electrophysiological and calcium imaging data from genetic animal models of neuropsychiatric disorders collected in the lab of Jeremy Hall (Cardiff). You would apply directly to the MRC GW4 BioMed PhD program (https://www.gw4biomed.ac.uk) which spans Bristol, Cardiff, Exeter and Bath Universities. Application deadline is 25th November and open only to UK or EU citizens or residents (see GW4Biomed site for eligibility details). Please contact Cian O’Donnell (cian.odonnell(a)bristol.ac.uk<mailto:cian.odonnell@bristol.ac.uk>) to discuss before applying. More info on Cian O’Donnell’s group: https://seis.bristol.ac.uk/~co15268 And the lively Bristol Computational Neuroscience Unit: https://bristolcnu.github.io Krasi Tsaneva-Atanasova: https://emps.exeter.ac.uk/mathematics/staff/kt298 Jeremy Hall: https://www.cardiff.ac.uk/people/view/57718-hall-jeremy

Oct. 12, 2019

2 Postdocs and 1 Project Manager on H2020 grant

by Michele Giugliano

2 Post-doctoral positions and 1 Project Manager position are available at the newly established Neural Dynamics Laboratory of the International School of Advanced Studies (SISSA) of Trieste, Italy (http://phdneurobiology.sissa.it/eng/faculty/michele-giugliano.aspx <http://phdneurobiology.sissa.it/eng/faculty/michele-giugliano.aspx>). The positions are funded for up to 42 months on a new EC-Horizon 2020 initiative called "Ionic Neuromodulation For Epilepsy Treatment (IN-FET)", combining neurobiology, nanotechnologies, electrochemistry, and electronics together for designing a breakthrough novel technology in brain modulation. The research positions aim to experimentally validate novel routes for cellular and microcircuit stimulation or suppression, in collaboration with a consortium of partners which includes IBM Research Zurich, the University of Geneva, the University of Sheffield, and the Inter-university consortium for Nanoelectronics. We search for experts in in vitro electrophysiology (substrate-integrated microelectrode arrays) and patch-clamp recordings (dissociated cell cultures, acute and organotypic brain tissue slices) with a strong background in quantitative data analysis and a strong interest for interdisciplinary research. The Project Manager position aims at supporting the organization, dissemination, and reporting activities in the context of EC-funded project and partially at supporting scientific software development. We search for candidates with previous experience in management of H2020 project, and fluent with the reporting EC online platform (e.g. Participant Portal) who might also be interested in providing partial support for content management of a web site as well as for scientific software applications development. Please direct informal inquiries, a CV and a brief statement of interest, to Prof. Michele GIUGLIANO (michele.giugliano AT sissa.it) Direct application soon available from the SISSA's website: https://www.sissa.it/recruitment <https://www.sissa.it/recruitment>

Oct. 11, 2019

Postdoctoral / Research Specialist position in Neural Circuits and Behavior

by Reiser, Michael

Postdoctoral / Research Specialist position in Neural Circuits and Behavior The Reiser lab at the Janelia Research Campus (https://www.janelia.org/lab/reiser-lab) seeks a creative scientist to join us in figuring out how the fly brain uses visual information to control behavior. We use behavioral, anatomical, imaging, electrophysiological, and computational methods to understand the neural circuits for vision and navigation in Drosophila. This is an exciting time to be working on the fly brain—full brain connectomes and precise genetic access to nearly every cell type in the brain are on the horizon. We pair these tools with high-throughput, high-content exploration of Drosophila behaviors. In this position, you would apply these methods to deeply map behavioral circuits. Many project directions are possible that are related to active research topics in the lab: • visual motion guided behaviors • visual place learning • central modulation of vision Requirements: • A keen interest in figuring out the brain. • Ph.D. in experimental biology, neuroscience, or a quantitative field. • Familiarity with scientific computing environments • Experience in some of these areas: instrumentation, computer vision, and machine learning, neurophysiology, animal behavior, Drosophila molecular/genetic methods, neuroanatomy. Janelia is a unique, exciting research environment near Washington, D.C., with abundant opportunities for collaboration and learning new things. Interested applicants should apply by email; please include your curriculum vitae and research interests and arrange for three letters of reference to be sent to reiserm at janelia.hhmi.org. The Reiser lab is committed to maintaining a diverse and inclusive environment. Members of groups underrepresented in science are especially encouraged to apply. HHMI is an equal opportunity employer.

Oct. 10, 2019

PhD position in computational neuroscience with Prof. Laurenz Wiskott in Bochum, Germany

by Laurenz Wiskott

Please forward this job advertisement to candidates who might be interested. Thanks, Laurenz Wiskott. ___________________________________________________________________________ Open position for a PhD student with Prof. Laurenz Wiskott at the Institute for Neural Computation, Bochum, Germany ___________________________________________________________________________ University: The Ruhr-Universität Bochum is one of the leading research universities. The university draws its strengths from both the diversity and the proximity of scientific and engineering disciplines on a single, coherent campus. This highly dynamic setting enables students and researchers to work across traditional boundaries of academic subjects and faculties. Institute: Institute for Neural Computation Ruhr-University Bochum Universitaetsstr. 150 D-44801 Bochum, Germany, EU The Institute for Neural Computation is a central research institute at the Ruhr-University Bochum, see https://www.ini.rub.de/. It focuses on the dynamics and learning of perception and behavior on a functional level but is otherwise very diverse, ranging from neurophysiology and psychophysics over computational neuroscience to machine learning and technical applications. Research group: Prof. Dr. Laurenz Wiskott, see https://www.ini.rub.de/research/groups/theory_of_neural_systems/ Research topics: We are looking for an outstanding candidate who will be working on a system-level model of spatial navigation with the hippocampus as one of its central areas. We use methods from neural networks and machine learning. It is also planned to simulate experiments done with rat and/or mice by our experimental partners. The position is part of a joint team with Prof. Sen Cheng working on developing a system-level model of hippocampal function for memory and navigation. This is being done in close interaction with a team working on similar questions from the machine learning perspective. Teaching: There is a teaching load of 3 hours per week during the semester, in particular for a programming course in python. Time: The appointment will be for three years and can then be extended for one more year if needed. Anticipated starting date is Feb 1st. Requirements: Candidates should have an education (equivalent to a MSc) in computer science, physics, mathematics, electrical engineering or any related field. Required are strong mathematical and programming skills (ideally in python) as well as the ability to communicate and work well in a team. Salary: Salary is 75% of salary scale TV-L E13. Inquiries: Informal inquiries can be addressed to Prof. Laurenz Wiskott <laurenz.wiskott(a)rub.de>. Application: Applications (CV, transcript of records for MSc and BSc, statement of purpose) should be sent as a single pdf file to Prof. Laurenz Wiskott <laurenz.wiskott(a)rub.de>. Ruhr-University Bochum is committed to equal opportunity in employment and gender equality in its working environment. We therefore look forward to applications from qualified women. Applications from appropriately qualified handicapped persons are also encouraged.

Oct. 10, 2019

PhD & Postdoc positions – computational modeling and real-time fMRI neurofeedback of language, bilingualism and dyslexia

by Narly Golestani

PhD & Postdoc positions – computational modeling and real-time fMRI neurofeedback of language, bilingualism and dyslexia PhD and Postdoc positions are available at the Brain and Language Lab (www.brainandlanguagelab.org<http://www.brainandlanguagelab.org>) at the University of Geneva. The PhD position is for 3-4 years, and the postdoc position is for up to 4 years, and salary will be commensurate with experience. Several projects will be done in collaborations with Maastricht University and with the University of Vienna. Applicants should have a strong interest in human brain imaging, and in language function and dysfunction, and should have one of (or a combination of) the following profiles: 1. Candidates with a degree in Biomedical Engineering, Computational Neuroscience, or a related field, and with solid experience in computational modelling (i.e. encoding / decoding) of fMRI data, machine learning, statistics and programming. Projects will include extensions of our recent work on the neural encoding of acoustic information in speech sounds (https://www.ncbi.nlm.nih.gov/pubmed/31285622) to higher levels of language processing. 2. Candidates with a degree in Cognitive Neuroscience, Biomedical Engineering and/or Psychology, with solid experience in the acquisition and analysis of brain functional (and structural) imaging data. Projects will include real-time fMRI neurofeedback training studies, focusing on different levels/aspects of language learning. Candidates for either position (depending on experience) will also have the opportunity to become involved in the analysis of data from a 7T myelin mapping (R1) study. The positions are available immediately, and applications will be considered until the position is filled. Applicants should send me their CV, a statement of research interests, and the names and contact information for 2-3 references, at Narly.Golestani(a)unige.ch<mailto:Narly.Golestani@unige.ch>. ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Prof. Narly Golestani Brain and Language Lab Department of Psychology Campus Biotech 9 Chemin des Mines, 1202 Genève +41 22 379 53 52 <https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs…>http://www.brainandlanguagelab.org https://twitter.com/brain_lang_lab ----------------------------------------------------------------------------------------------------------------------------------------------------------------- <https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs…>

Oct. 10, 2019

computational neuroscience PhD positions at Imperial College

by Dan Goodman

Two or more PhD positions in theoretical and computational neuroscience are available in the "Neural Reckoning" group of Dan Goodman at Imperial College London (http://neural-reckoning.org) I am interested in supervising students with a strong mathematical, computational or neuroscience background. Projects could be carried out in several possible areas relating to the work in the group. Some suggestions for topics that would be interesting to me are below, but I'm very happy to consider other possibilities. In addition to working within the group, studying at Imperial College provides excellent opportunities for interacting with other theoretical and experimental researchers, both at Imperial and in the many neuroscience groups in London. At the moment, I'm particularly interested in using techniques from machine learning to generate biologically plausible models that can also perform complex tasks. I'm also generally interested in how to perform computations with spiking neurons, and the computational role of neural mechanisms (such as spiking and heterogeneity). I often work in the auditory system, which is particularly interesting when thinking about temporal processing. Finally, I'm one of the authors of the "Brian" spiking neural network simulator (http://briansimulator.org) and I'm always interested in students who want to work on neuroinformatics projects such as simulation or neural data analysis. For more details, see: http://neural-reckoning.org/openings.html Applicants should initially send me a brief CV and cover letter with a description of research interests or a proposed project, and will eventually have to formally apply through the standard Imperial College mechanism (http://www.imperial.ac.uk/electrical-engineering/study/phd/) I will consider applications as they arrive, so earlier applications are encouraged. EU students from outside the UK are particularly encouraged to apply early because any offer made before Brexit will be respected on the basis of current rules, while the status of offers made after Brexit may be more complicated if a no deal Brexit goes ahead (although this is unlikely as the UK parliament has declared that to be illegal, but you never know). For more information on Brexit: https://www.imperial.ac.uk/about/imperial-and-the-european-union/support-fo… Before applying, please make sure you meet the Imperial College exam grade requirements: * General requirements: https://www.imperial.ac.uk/study/pg/apply/requirements/ * Country-specific minimum grades: https://www.imperial.ac.uk/study/pg/apply/requirements/pgacademic/ Dan Goodman

Oct. 9, 2019

Two MSc/PhD positions in Computational Neuroscience

by Yalda Mohsenzadeh

Two MSc/PhD positions in Computational Neuroscience The Cognitive Neuroscience and Artificial Intelligence Lab (CogNeuroAI Lab) at the University of Western Ontario in Canada, Department of Computer Science & the Brain and Mind Institute (BMI) has two MSc/PhD position openings in the field of cognitive computational neuroscience to start in January or May 2020. The positions offer a competitive stipend for the graduate students. The nature of these positions will provide the graduate students with opportunities to work on interdisciplinary collaborative projects. We are looking for motivated students to join exciting projects in our lab in developing cutting-edge computational methods to analyze brain MEG/EEG/fMRI data. We also train state of the art compute vision models and compare human brain MEG/EEG/fMRI data with inter units of the models. Please contact us if you are interested in cutting-edge interdisciplinary research. Candidates should have at least a Bachelors or Masters degree in Biomedical Engineering, Neuroscience, Computer Science or related fields. Having good programming skills in MATLAB, Python, and deep learning frameworks like Pytorch and experience in machine learning, compute vision, neuroscience experiments or brain data analysis will be a plus. Though there are lots of opportunities to learn these skills as well. Applicants should submit a cover letter, resume, a brief summary of the current and past research experience, TOEFL/IELTS (for international students only), official/unofficial master and bachelor academic transcripts to Dr. Yalda Mohsenzadeh (ymohsenz(a)uwo.ca) Please send all your documents as a single PDF file. Applications will be considered until the positions are filled. See our website for more information: https://mohsenzadehlab.com/ Best, Yalda Mohsenzadeh Assistant Professor, The Brain and Mind Institute, Department of Computer Science, The University of Western Ontario, London, Ontario, Canada

Oct. 8, 2019

[Special Issue CfP]: Machine Learning Techniques for Neuroscience Big Data

by Mufti Mahmud

Apologies for cross-posting. CALL FOR PAPERS Brain Informatics (*https://braininformatics.springeropen.com <https://braininformatics.springeropen.com>*) Special Issue on *Machine Learning Techniques for Neuroscience Big Data* Guest Editors • Mufti Mahmud, Nottingham Trent University, UK, Mufti.Mahmud(a)ntu.ac.uk • M Shamim Kaiser, Jahangirnagar University, Bangladesh, mskaiser(a)juniv.edu • Ganesh K Naik, Western Sydney University, Australia, Ganesh.Naik(a)westernsydney.edu.au Developing data-intensive tools to process and analyse the neuronal big data is one of the biggest challenges posed to today’s multidisciplinary brain science community. To share recent progress in decoding neuronal information processing, both in healthy and diseased brain, this special issue aims to provide a forum for scientists from diverse disciplines including – computer, electrical, biomedical, and neuro-engineering – who are looking for more relevant information in interpreting brain functions and diagnosing diseases using Machine Learning based techniques. This Special Issue will focus on the latest machine learning techniques and methods of analysing Neuroscience Big Data. Researchers and practitioners working in related areas are invited to submit research papers for possible publication in this issue. The topics may include but are not limited to the following list: • Processing and modelling of neuronal data for disease diagnosis and brain decoding; • Bio-inspired methods for network analysis and pattern recognition in neural data; • Novel machine learning techniques for neuronal big data analysis; • Application of deep and/or reinforcement learning to neuronal big data analysis; • Computationally intelligent techniques for neuroscience applications; • Machine learning inspired Neuroinformatics (including cloud computing and real-time systems). Important Dates --------------------- • Paper submission deadline: December 31, 2019 • First-round notification: January 31, 2019 • Final decision notification: March 31, 2020 Submission Instructions For submission instructions please visit the journal website at *https://braininformatics.springeropen.com/submission-guidelines <https://braininformatics.springeropen.com/submission-guidelines>* or contact *Dr. Mufti Mahmud at Mufti.Mahmud(a)ntu.ac.uk <Mufti.Mahmud(a)ntu.ac.uk>* The complete manuscript should be submitted through online submission system at: *https://www.editorialmanager.com/brai/default.aspx <https://www.editorialmanager.com/brai/default.aspx>* Best regards, Mufti Mahmud, PhD | Senior Member - IEEE & ACM (Senior) Lecturer of Computing & Technology | Nottingham Trent University Associate Editor, IEEE Access & Brain Informatics Editorial Board Member, Cognitive Computation & Big Data Analytics Programme Co-chair, IEEE CICARE2019, Xiamen, China Workshop Co-chair, Brain Informatics 2019, Hainan, China Coordinator of Local Organizing Committee, IEEE WCCI2020, Glasgow, UK Office: ERD200 | Clifton Campus | Clifton Lane | NG11 8NS – Nottingham | United Kingdom Phone: +44 (0)115 84 83202 | Email: mufti.mahmud(a)ntu.ac.uk http://orcid.org/0000-0002-2037-8348 https://scholar.google.com/citations?user=L8em2YoAAAAJ&hl=en https://sites.google.com/site/muftimahmud/ https://www.ntu.ac.uk/staff-profiles/science-technology/mufti-mahmud

Oct. 8, 2019