September 2017 - Comp-neuro - lists.cnsorg.org

Job Announcement: Computational Neuroscience RA

by Stacie Warren

Dear Colleagues, A Computational Neuroscience Research Assistant position is currently available at Palo Alto University to support the Clinical Cognitive and Affective Neuroscience Programs directed by Stacie L. Warren, PhD and Tilman Schulte, PhD. This is an exciting opportunity to work on a range of cognitive and affective studies that focus on executive function, emotion regulation, stress responsivity, reward processing, and aging on neural circuitry. Populations of interest include healthy adults, adults with or at risk for developing psychopathology, and neurological disorders. Opportunities to develop and apply novel data analysis techniques, to co-author research publications, and to assist with similar studies in children through a partnership with Stanford University are also available. Primary Responsibilities: Developing software/scripts to implement algorithms for data quality control, preprocessing, analysis, and management. Developing and implementing statistical/mathematical modeling (e.g., machine learning algorithms) to characterize high-dimensional datasets. Assisting with analyzing neuroimaging research data using neuroimaging-specific programs and/or software (e.g., FSL, Freesurfer, SPM, AFNI). Qualifications: BA/BS in a relevant field by the time of appointment. Proficiency in programming (e.g., Matlab, Python, C/C++, java) and shell scripting. Proficiency with Linux OS and file system. Experience with any of the following: signal and image processing, machine learning, statistical/mathematical modeling. Excellent organizational and interpersonal communication skills are required. Strong background in biomedical engineering, computer science, applied mathematics, statistics, computational neuroscience, quantitative psychology, or related subjects. Experience in neuroimaging data analysis is desired. A two-year commitment is required. This is a full-time position with a competitive salary and benefits. To apply, send a CV, a cover letter stating your research interests and career goals, and contact information for three references to swarren(a)paloaltou.edu. Review of applications will begin immediately. -- Stacie L. Warren, Ph.D. Assistant Professor Clinical Psychology Ph.D. Program Palo Alto University 1791 Arastradero Rd. Palo Alto, CA 94304 email: swarren(a)paloaltou.edu <staciewarren3(a)gmail.com>

Sept. 26, 2017

Postdoctoral positions in neural coding - IIT Rovereto, Italy

by Stefano Panzeri

We are seeking candidates for up to three postdoctoral position in computational neuroscience in the Neural Computation Laboratory at the IIT ( http://cncs.iit.it/labs/neural-computation ) directed by Stefano Panzeri ( https://www.iit.it/people/stefano-panzeri) and located in Rovereto (Trento), Italy. This laboratory aims to crack the neural code using neural network modeling and computational analyses of neurophysiological experiments. The laboratory offers a range of strongly interdisciplinary expertise in computational neuroscience, including information theory and other types of advanced single-trial neural analyses, advanced spectral analysis, and biophysically plausible neural network modeling. The successful candidate will develop and use tools for the analysis of large-scale simultaneous recordings of the spiking activity of cells in the cortex to understand how populations of neurons carry information. The successful candidate would have the opportunity to benefit from an extensive set of existing collaborations with leading neurophysiological laboratories, including those of Nikos Logothetis at Max Planck Tubingen (collaborating on oscillations, sensory information coding and neuromodulation), Tommaso Fellin at IIT (collaborating on Optogenetics, Neurophysiology and Neural coding), Mathew Diamond at SISSA (collaborating on the behavioral impact of information carried by spike timing), and Christopher Harvey at Harvard Medical School (collaborating on neural population dynamics and decision making). We are willing to consider candidates interested in any of the aspects of neural coding of interest to the laboratory. Candidates must hold a PhD in a numerate scientific discipline. They must be highly motivated and creative individuals who want to work in a dynamic, multi-disciplinary research environment and be willing to interact with both experimental and theoretical neuroscientists. For reference to recent work of the lab please see : Runyan C. A., et al (2017) Distinct timescales of population coding across cortex, Nature: 548: 92-96. Panzeri S., et al (2017) Cracking the neural code for sensory perception by combining statistics, intervention and behaviour. Neuron 93: 491-507 Safaai, H., et al (2015) Modelling the effect of Locus Coeruleous firing on single trial cortical state dynamics and sensory processing. Proc. Natl. Acad. Sci. USA 112(41): 12834–12839 Zuo Y, et al (2015) Spike timing and spike rate make complementary contributions to perceptual decisions in rat S1 and S2 cortex. Current Biology 25: 357-363 Besserve M, et al (2015) Shifts of gamma phase across primary visual cortical sites reflect dynamic stimulus- modulated information transfer. PLoS Biology 13(9): e1002257 The formal deadline for applications is Oct 15th 2017. However, interested candidates are advised to contact informally Stefano Panzeri ( stefano.panzeri(a)iit.it) *as soon as possible*. The formal application should be sent by email to selezioni(a)iit.it and to Stefano Panzeri (*stefano.panzeri(a)iit.it) <stefano.panzeri(a)iit.it)>*. The formal application should contain the applicant’s CV, a brief statement of research interests, and names and email addresses of 2 or 3 referees. Thanks Stefano Panzeri

Sept. 26, 2017

postdoctoral positions in brain-inspired computing at Sandia National Laboratories

by Chance, Frances S.

**apologies for the multiple emails from Sandia – this is an advertisement for a separate postdoctoral position than the computational neuroscience postdoc that was advertised last week. I’m very excited to see the neuroscience community at Sandia grow - I think a number of persons on this list have appropriate backgrounds for either position and would encourage those persons to apply to both. Colleagues, We are seeking a Postdoctoral Appointee to join an interdisciplinary research program focused on state-of-the-art computational and mathematical approaches and applications for brain-inspired computing. The neural computing group includes researchers with expertise in machine learning, cognitive science, neuroscience, physics, engineering, mathematics, and data analytics. Current research topics of interest include developing neural models and novel adaptive machine learning algorithms, as well as applying machine learning to develop new neuromorphic computing approaches. Some information on Sandia's neural-inspired computing research can be found at http://neuroscience.sandia.gov/. To apply, visit http://www.sandia.gov/careers/ and click "View All Jobs". Enter "658203" into the search box to locate this posting. For questions please contact William Severa (wmsever(a)sandia.gov<mailto:wmsever@sandia.gov<mailto:wmsever@sandia.gov%3cmailto:wmsever@sandia.gov>>) or Craig Vineyard (cmviney(a)sandia.gov<mailto:cmviney@sandia.gov<mailto:cmviney@sandia.gov%3cmailto:cmviney@sandia.gov>>). Additionally, we also encourage potential applicants to consider several of Sandia's laboratory wide fellowships for recent PhD graduates, including the John von Neumann Fellowship (http://www.sandia.gov/careers/students_postdocs/fellowships/johnvonneumann_…) in computational sciences and the inaugural Jill Hruby Fellowship (http://www.sandia.gov/careers/students_postdocs/fellowships/hruby_fellowshi…) While an offer of employment is not contingent upon receiving one of these fellowships, a number of them do have deadlines in the coming months.

Sept. 25, 2017

Research Associate in Functional Brain Mapping

by Dheeraj Rathee

*Dear All,* *Research Associate in Functional Brain Mapping * Applications are invited for a Post-Doctoral Research Associate (PDRA) in functional brain mapping (FBM) to work on a project aimed at discovering neuromarkers that facilitate stratification of patients with Alzheimer´s disease. The position is currently for 2 years, with possibility for further extension subject to securing funder’s approval. *Ref*( http://www.jobs.ac.uk/job/BEA525/research-associate-in-functional-brain-map… ) : 2752/ 1672326 *Location:* Ulster University, Magee campus, Derry~Londonderry, Northern Ireland, UK. *Salary*: £27,300 to £40,015 *Closing Date*: 4th October 2017 *Duties: *The successful candidate will use MEG data recorded during cognitive tasks, stimulations, and resting state protocols to explore functional connectivity and other appropriate measures for characterizing individuals with different stages of AD and detecting individuals at the risk of developing AD. S/he will also develop and evaluate methods for assessing treatment effects on individuals with AD in collaboration with industry. *Northern Ireland Functional Brain Mapping (NIFBM) facility: *The NIFBM is located at the Intelligent Systems Research Centre ( https://www.ulster.ac.uk/research/institutes/computer-science/groups/intell… ) of Ulster University, Magee campus, Derry~Londonderry. It is the only brain imaging facility anywhere in Ireland and only one of nine in whole of UK to use a state-of-the-art magnetoencephalography (MEG) to measure brain activity. The facility attracts clinicians and researchers from across Northern Ireland as well as Republic of Ireland. It is equipped with the latest whole head 306 channels Elekta Neuromag MEG TRIUX system, which also includes a 128-channel EEG recording system. We offer several advanced techniques for brain stimulation and analysis that allow us to obtain better results and guarantee a high quality service for both research and clinical applications. The ISRC is a major research unit in the Faculty of Computing, Engineering and the Built Environment and hosts around 80 researchers including academic staff, research associates and PhD students organized in four research teams: Neural Systems and Neuro-technology, Computational Neuroscience and Neural Engineering, Cognitive Robotics, and Ambient Intelligence and Virtual Worlds. Based at ISRC, the successful candidate will have an opportunity to interact with researchers from related ISRC teams as well as Biomedical Sciences Research Institute (5* research rating), and the recently developed Centre for Stratified Medicine at Ulster University. *Eligibility Requirements: *An eligible candidate should have a degree in Computing Science, Electronic Engineering, Physics, or a closely related discipline, or a higher degree in the same or related subjects. Applicants with other relevant degrees e.g. medicine, psychology, neuroscience or biomedical sciences may also be considered, subject to demonstration of substantial neuroimaging expertise. A PhD degree in an area relevant to the post is also an essential requirement. It is also required that a candidate: - Has extensive hands-on EEG/MEG experience including protocol design, setting up experiments and stimulations, and data acquisition; - Has strong skills and expertise in EEG/MEG analysis using modern tools such as Fieldtrip, SPM, MNE, and/or Brainstorm; - Has research track record in cognitive or clinical neuroscience supported by at least two high quality journal publications suitable for submission in to UK’s Research Excellence Framework (REF); - Is a self-motivated individual, enjoys working in a team and interacting with researchers and study participants. Please apply on-line by visiting either our university web-site http://www.ulster.ac.uk/jobs or the advertisement appearing at: http://www.jobs.ac.uk/job/BEA525/research-associate-in-functional-brain-map… For more information, please contact Prof. Girijesh Prasad, Principal Investigator & Director NIFBM facility. E-mail: g.prasad(a)ulster.ac.uk, Phone: 028 71675645. -------------------------------------------------------- [image: Ulster University] <http://www.ulster.ac.uk/> *Prof. Girijesh Prasad*, Professor of Intelligent Systems, Director, Northern Ireland Functional Brain Mapping facility for MEG studies, Intelligent Systems Research Centre, School of Computing & Intelligent Systems, Faculty of Computing & Engineering, Ulster University, Magee campus, Derry~ Londonderry BT48 7JL, N. Ireland, UK. *T:* +44 - (0)28 71 - 675645, 675409 *E:* g.prasad(a)ulster.ac.uk *W:* https://www.ulster.ac.uk/staff/g.prasad.html https://www.ulster.ac.uk/research/institutes/computer-science/groups/intell… *--------------------------* *Thanks & Regards* *Dheeraj Rathee* PhD Student Intelligent Systems Research Centre | Faculty of Computing and Engineering Ulster University (Magee Campus ) Northland Road, Derry Northern Ireland, UK BT 48 7JL Email Id: dheeraj.rathee(a)gmail.com | rathee-d(a)email.ulster.ac.uk Contact : +447459549514 Skype : dheeraj.rathee || Research Gate <https://www.researchgate.net/profile/Dheeraj_Rathee> || LinkedIn <https://in.linkedin.com/pub/dheeraj-rathee/97/162/2a8?domainCountryName=Ind…> *A 'Peaceful' Mind is a 'Productive' Mind. * *CONFIDENTIALITY NOTE : The information transmitted, including attachments, is intended only for the person(s) or entity to which it is addressed and may contain confidential and/or privileged material. Any review, re-transmission, dissemination or other use of, or taking of any action in reliance upon this information by person(s) or entities other than the intended recipient(s) is prohibited. If you have received this mail in error , please notify the sender and destroy any copies of the information. * * *************END OF DISCLAIMER*************** *

Sept. 25, 2017

Fully funded PhD student positions at IMPRS Brain and Behavior Bonn/Florida

by Jakob Macke

The INTERNATIONAL MAX PLANCK RESEARCH SCHOOL (IMPRS) FOR BRAIN AND BEHAVIOR is a transatlantic collaboration between the University of Bonn and the Max Planck associated Center for Advanced European Science and Research (caesar) along with the USA partners Florida Atlantic University and the Max Planck Florida Institute for Neuroscience (MPFI). We seek to fill at least 15 fully funded PhD student positions - NEUROSCIENCE OUR SCHOOL: The first of its kind to unite two Max Planck Institutes (caesar and MPFI) on both sides of the Atlantic, and their university partners (Bonn University and FAU): the IMPRS FOR BRAIN AND BEHAVIOR offers a competitive, English language, interdisciplinary, world-class PhD training and research program in the neurosciences. OUR RESEARCH: IMPRS for Brain and Behavior research projects address how sensory information is encoded in neural circuits and is transformed ultimately to behavior. This research ranges from understanding molecular signaling cascades in spines during learning to understanding how sensory and motor circuits are activated in the awake behaving animal. THE POSITIONS: More than 35 labs with an enormous variety of research projects are seeking outstanding PhD candidates to join their research. See our website for further information on our faculty and possible doctoral projects. Successful candidates will work in a young and dynamic, interdisciplinary, international environment, embedded in the local scientific communities in Bonn or Jupiter. YOUR PROFILE: Highly qualified and motivated aspiring PhD student from any nationality. Proven track record of academic and research excellence. Master’s degree (or equivalent) in biology, chemistry, physics, mathematics, computer science, engineering, or other relevant subject. Truly superior bachelor students may be considered. Fluency in written and spoken English. OUR OFFER: Immersion in a stimulating scientific culture of interaction and international cooperation. State-of-the art facilities with novel scientific technologies and advanced infrastructure. Dedicated support and mentoring personnel. Competitive salary funded for 3 years (extension possible) and no tuition fees. We are committed to diversity and equal opportunity for all applicants. Positions must be started not later than October 1, 2018. YOUR APPLICATION: Apply online at: http://www.imprs-brain-behavior.mpg.de by the December 1, 2017 deadline. Only applications submitted through the online portal will be considered! Short-listed candidates will be interviewed in March 12-13, 2018. CONTACT: Denise Butler, Coordinator (IMPRS.info(a)caesar.de)

Sept. 25, 2017

Several postdoctoral research positions in Statistical Neuroscience

by xaq pitkow

POSITION: We seek several highly motivated postdoctoral research fellows for a collaborative team project building statistical tools for interpreting large scale neural recordings. The fellows will develop new methods and applications of probabilistic graphical models to infer statistical interactions amongst neurons and with their environment. The tools will be validated in neural network simulations, tested in physiological recordings, and made widely available to the neuroscience community for understanding data from next-generation experiments. TEAM: Fellows will join principal investigators and theorists Krešimir Josić, Genevera Allen, Xaq Pitkow, Ankit Patel, and Robert Rosenbaum. The team will interact closely with experimentalists including co-Investigator Andreas Tolias and several other labs interested in applying novel methods we develop. Fellows will also be members of the new Center for Neuroscience and Artificial Intelligence housed at the Baylor College of Medicine and supported in part by the NSF NeuroNex program. The Center brings together interdisciplinary researchers from across Houston, including members from Baylor College of Medicine, Rice University, University of Houston, and University of Texas Health Sciences. Researchers at the Center contribute diverse expertise in fields including neuroscience, machine learning, statistics, physics, computer science, electrical engineering, and applied mathematics. QUALIFICATIONS: Candidates must have outstanding mathematical skills, a PhD in a relevant quantitative discipline, and expertise in probabilistic graphical models or statistical machine learning. APPLYING: Applicants should email a letter of research interests and CV to Camila Lopez (Camila.Lopez(a)bcm.edu) along with contact information for three references. We look forward to hearing from you!

Sept. 20, 2017

AMCOS save the date

by AMCOS Conference

SAVE THE DATE *AMCOS –** Analysis and Modeling of Complex Oscillatory Systems* March 19-23, 2018 Barcelona, Spain The *AMCOS conference* aims at bringing together renowned experts and young researchers who work on the modeling of complex systems and the emergence of collective phenomena, as well as on the analysis of complex data sets in order to infer structure and functionality of networks. Accompanying *tutorials* by leading experts will interactively introduce the different conference themes. Do you want to present your work? *Registration and abstract submission opens October 15, 2017*. More info at amcosconference.com. *Date and Venue* Tutorials: March 19, 2018 Conference: March 20 - 23, 2018 PRBB <http://www.prbb.org/>, Parc de Recerca Biomèdica de Barcelona *List of speakers* (*TBC) - Peter Ashwin, - Ernest Barreto, - Ginestra Bianconi*, - Raffaella Burioni, - Dante R. Chialvo, - Gustavo Deco, - Alain Destexhe*, - Albert Díaz-Guilera, - Jordi Garcia-Ojalvo, - Wulfram Gerstner*, - Leon Glass, - Sonja Grün, - Cristina Masoller, - Yamir Moreno, - Florian Mormann, - Hiroya Nakao*, - Diego Pazó, - Juan G. Restrepo, - Alex Roxin, - Tilo Schwalger*, - Damián H. Zanette. *Topics covered* synchronization and nonlinear dynamics - dynamics on networks - connectivity and network inference - data analysis in neuroscience - critical phenomena - neural field models - computational neuroscience - complex oscillatory behaviour in physiology *Tutorials* Leading experts in the field will introduce the different conference themes interactively in tutorials on the first day of the conference week. The speakers are: - Ralph G. Andrzejak, - Arkady Pikovsky, - Michael Rosenblum, - Aneta Stefanovska. A (tentative) list of topics comprises basic theory of synchronization, synchronization approach to data analysis, basic concepts of nonlinear time series analysis, and time series analysis of non-autonomous dynamics. The participants are required to bring laptops installed with MATLAB/Octave if they want to take part in the practical activities. *Organizers* The doctoral students (Early Stage Researchers <http://www.uni-potsdam.de/cosmos-itn/people/early-stage-researchers-esrs/>) of the H2020 Marie Curie project COSMOS <http://www.uni-potsdam.de/cosmos-itn/> . For further information see amcosconference.com or contact us via e-mail < amcosconference(a)upf.edu>. Please forward to anyone interested.

Sept. 20, 2017

postdoctoral positions in computational neuroscience at Sandia National Laboratories

by Chance, Frances S.

Colleagues, We are seeking a Postdoctoral Appointee to join an interdisciplinary research program focused on understanding neural computation at the circuit level. The neural computing group includes researchers with expertise in machine learning, cognitive science, neuroscience, physics, engineering, mathematics, and data analytics. Current research topics of interest include computational models of retina, visual cortex (or the neural circuitry underlying perception), and the hippocampus. More information on Sandia’s neuroscience research can be found at http://neuroscience.sandia.gov/. We are also encouraging potential applicants to look at several of Sandia’s laboratory wide fellowships for recent PhD graduates, including the John von Neumann Fellowship (http://www.sandia.gov/careers/students_postdocs/fellowships/johnvonneumann_…) in computational sciences and the inaugural Jill Hruby Fellowship (http://www.sandia.gov/careers/students_postdocs/fellowships/hruby_fellowshi…) While an offer of employment is not contingent upon receiving one of these fellowships, a number of them do have deadlines in the coming months. To apply, visit http://www.sandia.gov/careers/ and click "View All Jobs". Enter “658202” into the search box to locate this posting. For questions please contact Frances Chance (fschanc(a)sandia.gov<mailto:fschanc@sandia.gov>) or Brad Aimone (jbaimon(a)sandia.gov<mailto:jbaimon@sandia.gov>).

Sept. 19, 2017

post-doc positions to work on integrated information theory (IIT) with Prof. Giulio Tononi at University of Wisconsin-Madison

by Larissa Albantakis

*Post-doc position(s) to work on Integrated Information Theory (IIT) * Prof. Giulio Tononi, University of Wisconsin, Madison Several postdoctoral positions are available at the Wisconsin Institute for Sleep and Consciousness in the laboratory of Prof. Giulio Tononi to study complex systems within the framework of integrated information theory (IIT). Immediate funding is available for a range of projects including the foundational development of IIT’s mathematical framework, the development of practical measures of integrated information, and their applications to complex systems (biological and artificial). *Required:* - Strong training in an analytically rigorous discipline such as theoretical or computational biology/neuroscience, physics, mathematics, computer science, or engineering - Programming experience (knowledge of MATLAB, Python, and/or C++ is of advantage) * Preferred:* - Experience in information theory and complex systems - Interest in the philosophy of causation Appointments are renewable from year to year for up to three years, starting as soon as possible or until the positions are filled. Postdoc salaries correspond to the National Institutes of Health National Research Service Award (NRSA) stipend schedule for postdoc trainees, based on number of years of postdoctoral experience. Candidates should send a CV, brief statement (500 words maximum) describing their research interests and potential role within the lab, and email addresses and phone numbers of three references to: Giulio Tononi, MD, PhD (gtononi(a)wisc.edu) Note that generic applications will not be considered. To demonstrate a real interest in IIT, we strongly recommend applicants calculate the Φ value of a small network—three fully connected XOR logic gates, without self-loops, in state 0, 0, 0 (all off)—using the IIT online interface and include the result in the application email. For more information, see http://integratedinformationtheory.org/, or contact Larissa Albantakis, PhD (albantakis(a)wisc.edu) or William Marshall, PhD (wmarshall3(a)wisc.edu) -- Larissa Albantakis, PhD Department of Psychiatry University of Wisconsin 6001 Research Park Blvd Madison, WI 53719

Sept. 19, 2017

Postdoctoral position (Mathematical Neuroscience) at QIMRB, Brisbane Australia

by Matthew Aburn

Mathematical Neuroscience Research Fellow (full time 3 year appointment) - Innovative biomedical modelling - Attractive salary packaging & superannuation options This research fellow will pursue large-scale computational modelling and simulation of brain activity, and innovative analyses of time series and neuroimaging data, with particular focus on epilepsy. *Responsibilities* - You will contribute to developing and analysing new mathematical models of large-scale brain activity, including both biophysical neural mass models and networks of non-linear oscillators. - Simulate computational models on GPUs or high performance computing clusters, and collaborate in applying these to clinical and neuroscience research. - Perform innovative analyses of high-dimensional neurophysiological and neuroimaging data. - Contribute to experimental design and prepare manuscripts for related studies. - Participate in intra-mural group activities, including presentation at lab meetings and collaboration with other lab members and clinicians. *About you* Essential: The successful applicant will possess the following: PhD in mathematics, physics, bioengineering, computer sciences or related field; demonstrated ability to implement mathematical methods in code; evidence of strong oral and written communication skills. Desirable: Ideally candidates may also have a published track record in analysis of non-linear dynamical systems, particularly neural mass or neural field models or coupled non-linear oscillators; previous experience with GPU programming or high performance computing clusters; previous experience in neuroscience research; or expertise in time series analysis or signal processing. *About the lab* Led by Prof Michael Breakspear, the Systems Neuroscience Group (SNG) is an independent research team within QIMR Berghofer. The SNG is a multidisciplinary group who undertake innovative computational modelling and analysis of brain activity in health and disease. QIMR Berghofer is a world-leading translational medical research institute. Based in Brisbane, Australia and working in close collaboration with clinicians and other research institutes, QIMR Berghofer is home to more than 600 scientists, students and support staff. *Salary* Salary range is AUD $81,395-$84,257 per annum, plus up to 15.75% superannuation, and attractive salary packaging. This is a full time three year appointment. Closing date is 15 October 2017 Apply here: http://www.qimrberghofer.edu.au/careers/positions-vacant

Sept. 19, 2017