January 2016 - Comp-neuro - lists.cnsorg.org

Announcement of job opening: Scientist (postdoctoral) position on analysis of Electron Microscopy datasets

by Nuno da Costa

Dear Sir/Madam I would like to announce the following job opening in computational neuroscience mailing list POSITION SUMMARY We are seeking a neuroscientist to lead the effort in image processing , reconstruction and analysis of large scale Electron Microscopy datasets. The scientist will be an essential member of the Neural Coding team studying the relationship between neural circuits and neural dynamics by combining in vivo functional imaging with ex vivo state of the art Electron Microscopy. JOB RESPONSIBILITIES · Collaborate with others to develop a scalable and high throughput image processing pipeline for peta-scale Electron Microscopy datasets. · Collaborate with others to develop a workflow for morphological reconstruction of Electron Microscopy datasets. · Work closely with a team of anatomists, physiologists, theoreticians and modelers to analyze and interpret the relationship between structure and function in cortical networks. · Publish/present findings in peer-reviewed journals/scientific conferences. BASIC QUALIFICATIONS AND REQUIREMENTS · PhD in Computer Science, Neuroscience, Physics, Biology or related scientific field. (Required) · Excellent programming skills (Required) · A strong interest in understanding neuroanatomy and functional connectivity. (Required) · Experience with large scale datasets. (Preferred) · Experience with Electron Microscopy. (Preferred) Many thanks Nuno Nuno Macarico da Costa Assistant Investigator T: 206.548.8437 [cid:5047F5CE-4C9A-45E6-A13D-A46F96F5F6E6] www.alleninstitute.org<http://www.alleninstitute.org/>

Jan. 26, 2016

Sense 2 Synapse Conference, Saturday April 16, The Rockefeller University, New York City

by Christoph Kirst

Dear all, *Sense 2 Synapse* is back and is going to be held on *Saturday, April 16* at *The Rockefeller University,**New York City*, Carson Family Auditorium this year Our confirmed keynote speakers are: *Jeffrey Holt (Harvard University) Vanessa Ruta (Rockefeller University) Anthony Zador (Cold Spring Harbor Laboratory) Mike Shadlen (Columbia University)* Sense to Synapse is an annual conference for scientists working on the biology of sensory transduction, subsequent neural processing and perception. Primary target audience are scientists from New York-tristate area (New York, New Jersey and Connecticut), but the event is open to everyone interested in sensory systems. Please save the date; registration will open soon on sense2synapse.com <http://sense2synapse.com>. Give a short talk, present a poster, or just come to network with other scientists. As usual we will have great food, coffee and science. Information on last years event can be found here: http://sense2synapse.com/html/about.html. We hope to see you there! Christoph Krist Tobias Bartsch Gonzalo Otazu (Organizing committee S2S 2016)

Jan. 26, 2016

Re: [Comp-neuro] Postdoctoral Position using High-Density Electrophysiology in Behaving Primates

by Nicho

*Postdoctoral Position in Multi-Electrode Cortical Recording and Stimulation in Behaving Primates* A postdoctoral position is available in 2016 to investigate the neural basis of visuo-motor behavior.This project involves high density multi-electrode array recordings and stimulation from motor and premotor cortical sites in monkeys performing complex reaching and grasping movements.Experiments seek to investigate spatio-temporal patterning in single unit and local field potential activity that encodes different aspects of these movements.These experiments also seek to develop decoding algorithms for possible application in brain-machine interfaces.Facilities include a fully equipped electrophysiological laboratory with three 128-channel acquisition systems, a two-link exoskeletal robot, and a camera-based, motion capture system.Expertise in multi-electrode, behavioral electrophysiology is preferred.A strong mathematical, computational, or engineering background is also desirable.Applicants should send a CV and names and addresses of two or three references to Dr. Nicholas Hatsopoulos, Department of Organismal Biology & Anatomy, University of Chicago, 1027 East 57^th Street, Chicago, IL 60637 or by e-mail to nicho(a)uchicago.edu <mailto:nicho@uchicago.edu>.

Jan. 26, 2016

Postdoc position - human intracranial electrophysiology

by Brett Foster

Postdoctoral position in human intracranial electrophysiology and memory – Department of Neurosurgery, Baylor College of Medicine (Houston). We invite applicants for a postdoctoral research position at Baylor College of Medicine in Houston, focused on studying human episodic memory using intracranial recordings. Specifically, the project will focus on tracking cortical dynamics during the encoding and retrieval of visual stimuli by combining human electrocorticography (ECoG) measurements with multivariate statistical techniques (e.g. machine learning). Applicants should have a PhD in cognitive/computational neuroscience with prior training in the recording and analysis of electrophysiological data. The successful applicant will have expertise in programming time series analysis and multivariate statistics (e.g. matlab/python/r). Previous experience with human intracranial data is ideal but not essential. The successful applicant will also have excellent standards of written English, and data presentation, as shown through previously published work. The position is available from June 2016, for an initial appointment of one year, with renewal subject to review. Salary will be consistent with NIH standards and level of experience. Applications will be accepted until the position is filled. Applicants should send a letter of interest, CV, and 2-3 letters of reference (all pdf) to Dr. Brett Foster: brett.l.foster(a)gmail.com Baylor College of Medicine is an Equal Opportunity, Affirmative Action and Equal Access Employer.

Jan. 25, 2016

Brain Connectivity Workshop 2016, Marseille (France)

by Demian Battaglia

*** Please apologize cross-postings *** Brain Connectivity Workshop 2016, Marseille (France) ------------------------------------------------------------------------ When: 22nd to 24th June, 2016 Link to official website: http://bcw2016.org We are happy to announce the 15th edition of the Brain Connectivity Workshop (BCW) to take place in Marseille from the 22nd to the 24th of June 2016. The Brain Connectivity Workshop (BCW) is a well-established workshop series, which has been held annually in Europe, USA, Australia and Asia for the last 14 years. BCW is an official satellite of the annual meeting of OHBM, which is held in Geneva, Switzerland in 2016. BCW attracts every year a public of 100-200 participants working in cognitive, computational and clinical neurosciences. The discussions are centered on all themes around brain connectivity including structural and functional imaging, modeling, brain function and clinics. BCW is highly influential in the field due to the traditionally high quality of speakers and a long track record of innovation. For instance, both, the Connectome and The Virtual Brain have been born within the BCW community. The typical BCW format —a first educational day of lectures held by international authorities in their fields, followed by two days of shorter talks with ample time for discussion provides a unique forum for creativity, controversy and brainstorming. BCW 2016, introduced by a first day of tutorials by experts in their field, will feature focused sessions on themes such as perturbing the brain, mapping the brain, and brain dynamics in function (cognition) and dysfunction (epilepsy). Registration will open soon. NB!!!!!!! Please note that European Cup of Football will be held in France during this period and hotels are going to be booked fast! Confirmed educational lecturers (day 1) and workshop speakers (days 2-3) include: Fabrice Bartolomei (Aix-Marseille University, Marseille, France) Michael Breakspear (QIMR, Brisbane, Australia) Vince Calhoun (University Of New Mexico, Albuquerque, NM) Karl Friston (UCL, London, UK) Jorge Gonzalez-Martinez (Cleveland Clinic, Cleveland, OH) Marc Goodfellow (University of Exeter, Exeter, UK) Charles Gray (Montana State University, Bozeman, MT) Claudius Gros (Goethe University, Frankfurt am Main, Germany) Sean Hill (EPFL, Lausanne, Switzerland) Martin Hoffman-Apitius (Fraunhofer Institute SCAI, St Augustin, Germany) Esther Krook-Magnuson (University of Minnesota, Minneapolis, MN) Pierre Luppi (Lyon Neuroscience Research Center, Lyon, France) Randy McIntosh (Baycrest Research Center, Toronto, ON) Lionel Naccache (ICM, Paris, France) Ivan Soltesz (UC Irvine, CA) Olaf Sporns (Indiana University, Bloomington, IN) William Stacey (University of Michigan, Ann Arbor, MI) Gregor Thut (University of Glasgow, Glasgow, UK) Stephan Van Gils (University of Twente, Ae Enschede, The Netherlands) Michael Wibral (Goethe University, Frankfurt am Main, Germany) A special evening lecture will be delivered by Patrick Chauvel (Aix-Marseille University, Marseille, France). A detailed program is coming soon. Organizing committee: Viktor Jirsa, Chair (INS, Aix-Marseille University, UMR 1106 INSERM) Demian Battaglia, Christian Bénar, Mireille Bonnard, Monique Esclapez (INS, Aix-Marseille University) Andrea Brovelli (INT, Aix-Marseille University), Maxime Guye (CRMBM, Aix-Marseille University, UMR 7339 CNRS & APHM) Ingo Bojak (University of Reading, UK). An event sponsored by: University Aix-Marseille, Brain Products, Bionics, Springer EPJ Nonlinear Biomedical Physics Journal, Codebox, Institute of System Neuroscience Inserm, Institute of Neuroscience Timone, Center for Magnetic Resonance in Biology and Medicine, Mediterranean Society of Neuroscience (IBRO member)

Jan. 25, 2016

Two fully funded PhD positions in Computational Neuroscience at Georgia State University

by Yaroslav Molkov

Two fully funded doctoral student positions in computational neuroscience for the duration of up to four years with very competitive compensation are available in the Department of Mathematics and Statistics at Georgia State University. The successful candidates will work with Dr. Yaroslav Molkov and his collaborators on a number of projects including neural control of breathing and locomotion, motor control, body temperature control, etc. For more details, see https://sites.google.com/site/ymolkov/home. The University: http://www.gsu.edu Georgia State University is the Southeast's leading urban research institution. It is on the list of the top 100 public universities for doctoral degrees awarded. More than 250 fields of study are offered through some 55 accredited degree programs at the bachelor's, master’s, specialist and doctoral levels. Our student body is the best qualified and most diverse in our history. More than 40,000 students are seeking degrees at Georgia State, and more than 28,000 of them are on campus each semester. Students come to our campus from every county in Georgia, every state in the nation and 160 countries. The campus is located in the heart of downtown Atlanta. The Department: http://mathstat.gsu.edu Currently, the department has twenty seven tenured or tenure-track faculty members, fourteen lecturers and academic professionals, and about eighty graduate students. The Department’s faculty members are very active in research and publication. They regularly publish in top-ranked journals, more than 1/3 of the research faculty members are supported by various federally funded grants, and several members have been serving on editorial boards of journals. They have been directing PhD dissertations and MS theses within the department, joint with other departments of the College of Arts and Sciences, and in conjunction with other universities. Please apply at http://cas.gsu.edu/graduate-studies/admissions/ For additional information, contact Dr. Molkov or Dr. Florian Enescu, Graduate Director, Tel: (404) 413-6442, Email: fenescu(a)gsu.edu. ================================= Yaroslav Molkov, PhD Associate Professor Department of Mathematics & Statistics Georgia State University 30 Pryor St SW, Atlanta, GA 30303, Room 722 Phone: (404) 413-6422 Email: ymolkov(a)gsu.edu

Jan. 25, 2016

Re: [Comp-neuro] Real World Eye Tracking Course

by Durant, Szonya

Real World Eye Tracking Course<https://www.royalholloway.ac.uk/psychology/prospectivestudents/real-world-e…> An introductory course to using eye tracking in real world situations Organized jointly by Acuity Intelligence Ltd. and Dept. of Psychology, Royal Holloway * Compare several remote fixed eye-tracker and mobile eye-tracking glasses systems * A range of manufacturers * Gain hands-on experience in real-world situations * Meet and collaborate with users from academia and industry Systems used in mini-projects: Tobii Glasses 2, TX300, SMI eye tracking glasses Software used: Tobii Studio, Tobii Glasses 2 software, SMI iView, BeGaze Further possible system demonstrations: Ergoners Dikabils, EyeLink Course outline: https://www.royalholloway.ac.uk/psychology/documents/pdf/course-outline.pdf Further details: https://www.royalholloway.ac.uk/psychology/documents/pdf/further-details.pdf Course dates: 9.30am 25 April - 5.30pm 26 April 2016 Department of Psychology, Royal Holloway, University of London, Egham, Surrey, TW20 0EX, United Kingdom Prices: Industry £800, HEI staff £400, Postgraduate students £80 (note for a postgrad place, email contact below to be placed on waiting list) (participants can be based in any country) Deadline for registration: 1 Feb 2016 Link for registration: http://onlinestore.rhul.ac.uk/browse/category.asp?compid=1&modid=1&catid=643 Contact: sales(a)acuity-intelligence.com<mailto:sales@acuity-intelligence..com>

Jan. 25, 2016

Announcing: Computational Approaches to Memory and Plasticity summer course, July 2016

by U.S.Bhalla

CAMP@Bangalore 2016 will run from 1 July to 16 July 2016. Please see the course website at http://camp.ncbs.res.in/ CAMP @ Bangalore (Computational Approaches to Memory and Plasticity at NCBS, Bangalore) is a 16-day summer school on the theory and simulation of learning, memory and plasticity in the brain. There is a special emphasis on multiscale phenomena in learning and memory: How do molecular, electrical, and network levels of computation come together to give memory? The course will start with remedial tutorials on neuroscience / math / programming and then work upwards from sub-cellular electrical and chemical signaling in neurons, and onward to micro-circuits and networks. Students worldwide are encouraged to apply. Accommodation and food will be free for the selected students. There is no registration fee. Students are advised to obtain independent travel grants. Last date for applications: 21 February 2016. Instructors include: Tomoki Fukai, (RIKEN BRAIN SCIENCE INSTITUTE, Japan) Alain Destexhe (CNRS, France) Misha Tsodyks (Weizmann Institute, Israel) Upinder Bhalla (NCBS, Bangalore) Rishikesh Narayanan (Indian Institute of Science, Bangalore) Arvind Kumar (KTH, Stockholm) Sumantra Chattarji (NCBS, Bangalore) Suhita Nadkarni (Indian Institute of Science Education and Research, Pune) Raghav Rajan (Indian Institute of Science Education and Research, Pune) Course Organizers: Upinder Bhalla (NCBS, Bangalore) Arvind Kumar (KTH Stockholm) Rishikesh Narayanan (Indian Institute of Science, Bangalore)

Jan. 25, 2016

Postdoctoral position in computational neuroscience at Harvard

by Jan Drugowitsch

*Postdoctoral position in the Drugowitsch Lab in computational neuroscience* *Location*: Harvard Medical School, Boston, MA *Start*: May 2016 or after We are looking for a highly creative and motivated postdoctoral fellow to work in the field of computational and systems neuroscience in the group of Jan Drugowitsch - Department of Neurobiology at Harvard Medical School ( http://neuro.hms.harvard.edu/people/faculty/jan-drugowitsch) The group works on questions of decision-making and navigation under uncertainty, ranging from the level of neural populations to that of behavior. The candidate is expected to perform research related to these topics. Close interaction and collaboration with other members of the department is anticipated. Candidates should have a strong analytical background (e.g., computational neuroscience, physics, mathematics, engineering, etc.) and feature an interest in the role of computation in neural populations and in theoretical neuroscience in general. Experience or familiarity with related machine-learning fields is also desirable. Previous experience should include sufficient programming skills to run numerical simulations, Bayesian methods, and expertise in the analysis of dynamical systems. The position starts in or after May 2016, and is funded for several years, with an initial one-year appointment and expectation of extension given satisfactory performance. Salary depends on experience and is at levels above the NIH scale. Candidates should send a single pdf file, consisting of a 1-page motivation letter, CV, and publication list to jan_drugowitsch(a)hms.harvard.edu. Furthermore, candidates should organize two letters of reference, to be sent to the same e-mail address. The position is open until filled. Jan Drugowitsch will be available at the Cosyne conference and workshops for question about the position.

Jan. 25, 2016

Fellowships for Image Based Modeling Summer Course in Park City, Utah

by Rob MacLeod

Dear Colleagues, I am pleased to inform you that the fellowship application and registration are now open for the Image Based Biomedical Modeling (IBBM) Summer Course in July, 2016. We encourage you to forward this email to your group and your community. If you have any question please let me know. Fellowship Application Deadline : March 15, 2016 Early Bird Registration Deadline: May 15, 2016 Registration Deadline: June 10, 2016 We look forward to welcoming you to Utah this summer. Best, The IBBM Team Park City Summer Course in Image Based Biomedical Modeling July 11-21, 2016 Newpark Resort in Park City, Utah ibbm.sci.utah.edu <http://ibbm.sci.utah.edu/> Contact: ibbm(a)sci.utah.edu <mailto:ibbm@sci.utah.edu> For Graduate Students, Postdocs, Faculty, and Industry. We invite students underrepresented in health-related sciences to apply. This course creates field-specific expertise and hands-on experience in bioelectric or biomechanical problems that arise in current biomedical research and clinical practice. It provides training in numerical methods, image analysis, and computational tools necessary to carry out end-to-end, image-based, subject-specific simulations in bioelectricity or biomechanics, using freely available software. Organizers: Rob Macleod, Jeff Weiss, and Ross Whitaker Supported by the National Institutes of Health (NIH), National Institute of General Medical Sciences (NIGMS)

Jan. 25, 2016