December 2015 - Comp-neuro - lists.cnsorg.org

PhD position in computational neuroscience. 'Identification of Metastable Cortical Dynamics Underlying Cognitive Decisions'. Bournemouth & Barcelona Universities

by Emili Balaguer-Ballester

PhD position in computational neuroscience. "Identification of Metastable Cortical Dynamics Underlying Cognitive Decisions? Bournemouth University-IDIBAPS". A PhD position is available in 3-years fully-funded project "Identification of Metastable Cortical Dynamics Underlying Cognitive Decisions"; based at Bournemouth University (UK) https://research.bournemouth.ac.uk/centre/interdisciplinary-neuroscience-re… and at the Biomedical Research Institute August Pi I Sunyer (IDIBAPS, http://www.idibaps.org/en_index.htm, University of Barcelona, Spain). Do we have analysis tools for a reliable identification of the dynamical processes underlying decision-making? This is a fundamental question, touching the very basics of our understanding of neural computation and hence one of the most exciting topics in neuroscience. However, to reconstruct in detail neural dynamics generating cognitive decisions is a major challenge for current methodologies. This would be a highly significant advance; for instance the identification of stable dynamical patterns of activity in hippocampus deserved to win the last Nobel Prize. The aim of the project is to develop innovative approaches designed for the identification of metastable dynamics underlying cognitive decisions. We aim for the fusion of statistical learning approaches to pattern discovery with methods for identifying neural attractor dynamics and neurocomputational modelling. The novel approach will reconstruct neural dynamics during tasks specifically designed at Sanchez-Vives Lab in rodents and in human subjects at the Bournemouth EEG lab. The training possibilities that this interdisciplinary project offers are multiple and relevant in building-up a high-profile as a neuroscientist. The student will benefit from the vibrant scientific environment of neural computation and neurosciences at BU https://research.bournemouth.ac.uk/centre/interdisciplinary-neuroscience-re… and at the cortical networks lab; embedded in the renowned systems neuroscience network in Barcelona http://www.sanchez-vives.org/. Applicants holding a degree in Physics, Mathematics, Engineering, Computer Science or similar disciplines are welcome. Interest or previous training in neuroscience or laboratory experience and a strong mathematical or machine learning background would be very welcome. The researcher will be based at the Faculty of Science, Bournemouth University, and work with Dr Balaguer-Ballester at the Computational Neuroscience laboratory in the context of the interdisciplinary group for neurosciences; and will spend prolonged periods of time in the Cortical Networks Lab (IDIBAPS, Barcelona) led by Prof. Maria Victoria Sanchez-Vives; providing an outstanding opportunity to gain a diverse experience of both neuro-computational and experimental approaches. For formally applying and more information please visit https://research.bournemouth.ac.uk/pgr/funded-phd-studentships-in-the-facul… Please Cc your application to eb-ballester(a)bournemouth.ac.uk For further details please do not hesitate to contact me any time: eb-ballester(a)bournemouth.ac.uk: Twitter: @emilibalball; http://dec.bournemouth.ac.uk/staff/ebb/ Kind regards, Emili BU is a Disability Two Ticks Employer and has signed up to the Mindful Employer charter. Information about the accessibility of University buildings can be found on the BU DisabledGo webpages This email is intended only for the person to whom it is addressed and may contain confidential information. If you have received this email in error, please notify the sender and delete this email, which must not be copied, distributed or disclosed to any other person. Any views or opinions presented are solely those of the author and do not necessarily represent those of Bournemouth University or its subsidiary companies. Nor can any contract be formed on behalf of the University or its subsidiary companies via email.

Dec. 17, 2015

Workshop "modeling the early visual system" in Paris, January 19-20th

by Olivier Marre

INTRODUCTION Do we know what the early visual system does? This question was the topic of a workshop at the SFN meeting ten years ago. Over the last decade, there has been tremendous progress in understanding the computations performed in the visual system, and how they are implemented by the neural circuitry. The purpose of this workshop is to gather both theoreticians and experimentalists in the field to take stock and debate about the current challenges when trying to understand the computations performed by the early visual system, and how they result from both bottom-up and top-down processes. CONFIRMED SPEAKERS Philipp Berens, University of Tuebingen, Germany Laura Busse, University of Tuebingen, Germany Matteo Carandini, UCL, UK Frédéric Chavane, INT, Marseille, France Karl Farrow, NERF, Belgium Yves Frégnac, UNIC laboratory, CNRS, Gif sur Yvette, France Charles Gilbert, Rockefeller University, New York, USA Tim Gollisch, University of Gottingen, Germany Peter Neri, Ecole Normale Supérieure, Paris, France Elad Schneidman, Weizman Institute of Science, Israel Andreas Tolias, Baylor College of Medicine, Austin, USA Shimon Ullman, Weizman Institute of Science, Israel REGISTRATION This workshop will take place in the European Institute for Theoretical Neuroscience ( http://www.eitn.eu/ ), Paris, January 19th and 20th. Registration is free but mandatory. We have a few slots for posters that will be presented during the meeting. If you are interested in presenting a poster. For registration and/or abstract submission, please refer to the workshop website: http://eitnconf-190116.sciencesconf.org/ On behalf of the organizing committee, Olivier Marre Institut de la Vision F-75012 Paris

Dec. 17, 2015

International Conference on Mathematical Neuroscience (ICMNS) 2016

by Zachary Kilpatrick

We would like to remind you about… The 2nd International Conference on Mathematical Neuroscience (ICMNS 2016) at the Congress Center in Juan-les-Pins on the French Riviera May 29 to June 1, 2016 Tutorials: May 29 Main Conference: May 30 - June 1 https://icmns2016.inria.fr/ <https://icmns2016.inria.fr/> One page abstracts will be reviewed by a Program Committee and divided into three categories: featured talks, session talks, and posters. https://icmns2016.inria.fr/call-for-contributions/ <https://icmns2016.inria.fr/call-for-contributions/> The abstract submission deadline is January 7, 2016. Meeting registration will open shortly thereafter. Questions should be directed to the conference email: icmns2016-contact(a)inria.fr <mailto:icmns2016-contact@inria.fr> CONFIRMED SPEAKERS Wulfram Gerstner (École polytechnique fédérale de Lausanne) John Rinzel (New York University) Antoine Triller (École Normale Supérieure de Paris) Rachel Kuske (U British Columbia) Jonathan Rubin (U Pittsburgh) Hinke Osinga (U Aukland) Carina Curto (Penn State University) Ruben Moreno-Bote (Foundation Sant Joan de Deu) Hiroya Nakao (Tokyo Institute of Technology) Eric Shea-Brown (U Washington) Si Wu (Beijing Normal University) Alex Roxin (Centre de Recerca Matematica) PROGRAM COMMITTEE Toni Guillamon (Universitat Politècnica de Catalunya) Roland Potthast (U Reading) Gregory Faye (Université Paul Sabatier ) Wilhelm Stannat (TU Berlin) Jonathan Touboul (College de France) Gilles Wainrib (Ecole Normale Supérieure) Suzanne Ditlevsen (University of Copenhagen) Boris Gutkin (Ecole Normale Supérieure) Martin Wechselberger (U Sydney) Jonathan Rubin (U Pittsburgh) Martin Krupa (INRIA Sophia Antipoilis) Carlo Laing (Massey University) Andre Longtin (U Ottawa) Daniele Avitabile (U Nottingham) Jose Carrillo (Imperial College) Pascal Chossat (Université Nice Sophia Antipolis) Carson Chow (National Institutes of Health) Steve Zucker (Yale University) Eric Shea-Brown (U Washington) Rachel Kuske (U British Columbia) Laura Sacerdote (Universita di Torino) Reinhard Hopfner (Johannes-Gutenberg Universitat) Olivier Faugeras (INRIA - Sophia Antipolis) Paul Bressloff (U Utah) Steve Coombes (U Nottingham) CONFERENCE CHAIRS Romain Veltz (INRIA - Sophia Anitpolis) Zachary Kilpatrick (U Houston) Evelyn Buckwar (Johannes Kepler Universitat Linz) We hope to see you in Juan-les-Pins! All the best Romain, Zack, and Evelyn

Dec. 17, 2015

NeuronUnit/NeuroML & Modeling Postdoctoral Research Position at ASU

by Sharon Crook

ARIZONA STATE UNIVERSITY An Equal Opportunity/Affirmative Action Employer Postdoctoral position in Computational Neuroscience and Neuroinformatics (Job #11446) We are soliciting applications for a postdoctoral position in the Laboratory for Informatics and Computation in Open Neuroscience at Arizona State University. This laboratory, jointly supervised by Dr. Sharon Crook and Dr. Rick Gerkin, focuses on developing resources for the community for describing, validating and sharing computational models in neuroscience. In addition, lab personnel conduct empirical and modeling studies in order to investigate fundamental questions in neuroscience. The successful candidate will contribute to the development and use of tool chains for model validation and model exchange that revolve around NeuronUnit and NeuroML. The postdoctoral researcher also will have the opportunity to choose the direction of their own modeling studies. Applicants must provide evidence of excellence in sustainable software development, experience in applications in neuroscience, and should also be highly independent, with a strong propensity for interdisciplinary research. Candidates must hold a PhD in neuroscience, computer science, applied mathematics, computational neuroscience or a related discipline by time of appointment and be highly motivated and creative. Experience with some combination of Python, XML, MySQL, Ruby on Rails, and NEURON is desirable. Named the #1 Most Innovative University in the US, Arizona State University offers an exciting research environment in a unique setting. ASU is located in Tempe, Arizona, which offers many rich cultural and outdoor opportunities with access to mountains and canyons visited by people from around the world. All applications must be submitted online through mathjobs at https://www.mathjobs.org/jobs/jobs/8375 and must include the following: 1) A detailed CV 2) Two recommendation letters 3) A statement of research interest Any questions should be sent by email to Dr. Sharon Crook (sharon.crook(a)asu.edu) and Dr. Rick Gerkin (rgerkin(a)asu.edu) Initial review of applications will begin January 15, 2016; if not filled, applications will be reviewed every two weeks thereafter until the search is closed. Arizona State University is a VEVRAA Federal Contractor and an Equal Opportunity/Affirmative Action Employer. All qualified applicants will be considered without regard to race, color, religion, national origin, protected veteran status, or any other basis protected by law. https://www.asu.edu/aad/manuals/acd/acd401.html https://www.asu.edu/titleIX/.

Dec. 16, 2015

Three PhD projects in modelling brain diseases and brain development at Newcastle University

by Marcus Kaiser

Dear all, we are currently advertising the following three 4-year PhD positions for our lab with application deadlines early next year. The funding covers living expenses and UK/EU fees over four years and, using overseas research studentships, potentially also the higher fees for non-EU applicants. Students are chosen in competition with students who choose projects in other fields, which means that we would particularly encourage strong applicants with very good academic marks and previous research experience to apply. Please follow the links below for more information. *Newcastle-DTA PhD studentships* (1) Building brains: Which developmental pathways lead to better performance in information processing? <http://www.ncl.ac.uk/sage/study/postgrad/dta/documents/2016-Kaiser-122.pdf> (School: Computing Science Ref: DTA122) Within this project, a student will help to develop detailed simulations of brain network development. In addition, the student will test the performance of the grown networks on visual tasks. Through this, we will investigate (a) how developmental mechanisms are linked to the resulting topology and (b) how the resulting network is linked to processing performance. As a result, we will get a better understanding how changes during development are linked to brain architecture and how they can lead to cognitive deficits. Supervisors: Prof. Marcus Kaiser, Dr Gavin Clowry, and Dr Roman Bauer (2) Predicting patient outcomes following traumatic brain injury <http://www.ncl.ac.uk/sage/study/postgrad/dta/documents/2016-Kaiser-123.pdf> (School: Computing Science Ref: DTA123) In this study we will investigate the impact of simulated brain lesions using human brain connectivity data and computer simulations. We shall aim to produce biomarkers for patient outcomes. These techniques may hive wider applications in stroke, multiple sclerosis and ageing. Supervisors: Prof. Marcus Kaiser and Dr Peter Taylor Please *apply by 22 January* at http://www.ncl.ac.uk/sage/study/postgrad/dta/ *Newcastle-Singapore PhD studentships* (3) Improving surgery in focal epilepsy using computational modelling <http://www.ncl.ac.uk/sage/study/postgrad/singapore/documents/Improvingsurge…>(School: Computing Science Ref: NSS12) In this project we shall attempt to predict which patients will be seizure free after surgery. For those patients predicted to be not seizure free we shall suggest alternative strategies for surgery. See also our recent article in PLOS CB: http://www.ploscompbiol.org/article/metrics/info%3Adoi%2F10.1371%2Fjournal.… Supervisors: Dr. Peter Taylor, Prof. Marcus Kaiser, and Asst. Prof. Justin Dauwels (NTU, Singapore). The student will be based at Newcastle but also visit Singapore Please *apply by 26 February* at http://www.ncl.ac.uk/sage/study/postgrad/singapore/ *Research Environment* There are currently 12 faculty members with a link to neuroinformatics and computational neuroscience. Using computational models for clinical applications is a strong interest of our group (see http://neuroinformatics.ncl.ac.uk/ for an overview). Students will be based in the School of Computing Science, which was ranked #9 for research and #1 for impact in the recent UK Research Excellence Framework evaluation, as part of the ICOS Group (http://ico2s.org/ ). They will also be affiliated with the Institute of Neuroscience which integrates more than 100 principal investigators across medicine, psychology, computer science, and engineering and which was ranked #9 overall and #5 for impact in the UK ( http://www.ncl.ac.uk/ion/) Newcastle University, with 20,000 students, lies in the city of Newcastle-upon-Tyne -- an area in the North-East of England with around one million inhabitants. The university is at the centre of Newcastle which itself is on the main train-line between London and Edinburgh, 20 minutes away from both the airport and the sand beach by public transport ( http://www.ncl.ac.uk/about/visit/city/ ). We also offer a one-year master programme in Computational Neuroscience and Neuroinformatics (http://www.ncl.ac.uk/computing/study/postgrad/taught/5199/ ) which is now accepting applications.

Dec. 16, 2015

DENDRITES 2016, June 18-21, Crete: CALL FOR ABSTRACTS

by Yiota Poirazi

Please distribute to potentially interested parties and email lists. Many thanks! Looking forward to welcoming you in Crete! On behalf of the organizing committee, Yiota Poirazi ------------------------------------------------------- EMBO Workshop on Dendritic Anatomy, Molecules and Function (DENDRITES 2016) Heraklion, Crete, Greece June 18-21, 2016 http://dendrites2016.gr/ <http://www.dendrites2016.gr/> * * * * * *CALL FOR ABSTRACTS* * * * * * Abstract submission for poster and oral presentation is open until *February 15, 2016* This EMBO Workshop brings together scientific leaders to present their research on dendrites, at the molecular, anatomical and biophysical level. Apart from scientific talks from top experts in the field, the meeting includes a full day dedicated to Career Issues in academia. This session features talks from the current President of FENS as well as young Neuroscientists from theFENS-Kavli Network of Excellence <http://www.fens.org/Outreach/FENS-Kavli-Network-of-Excellence/> that are dealing with such issues. _Invited speakers (scientific talks): _ Claudia Clopath Daniel Dombeck Casper Hoogenraad Arthur Konnerth Attila Losonczy Judit Makara Rishikesh Narayanan Elly Nedivi Jackie Schiller Erin Schuman Idan Segev Nelson Spruston Greg Stuart _Invited speakers (Career Issues in academia):_ Monica Di Luca, FENS President: "Publication issues: right time for a reality check" Camilla Belone, FENS-Kavli Scholar: "Retention of women in high levels of neuroscienceÂ - Perspectives" Emre Yaksi, FENS-Kavli Scholar: "Funding opportunities in Neuroscience: how to write a successful grant proposal" CALL FOR ABSTRACTS We are soliciting abstracts for oral and poster presentations. We welcome both experimental and theoretical contributions addressing novel findings, methods or databases related to dendrites that fall into one or more of the following domains: * morphological and functional characterizations, * dendritic integration and compartmentalization, * dendritic channel distribution and their functional implications, * molecular pathways and signaling networks, * RNA trafficking and local protein synthesis, * functional or structural plasticity and homeostasis, * the role of dendrites in complex processes, including learning/memory, neural computations etc. Please note that places are limited and subject to availability. Attendees are highly encouraged to submit abstracts for presentations, since presenters will be given priority for registration. Instructions for on-line submission can be found at http://www.dendrites2016.gr/call-for-papers *Important dates * * Abstract submission opens: December 15th, 2016 * Abstract submission closes: February 15th, 2016 * Notification of abstract acceptance: February 29th, 2016 * Notification of oral/poster presentation: early March 2016 _Organizing committee:_ Yiota Poirazi, IMBB-FORTH Michael Hausser, UCL * * Matthew Larkum, Humboldt University IMPORTANT NOTE: The Workshop takes place on the island of Crete and is followed by the AREADNE 2016 meeting <http://areadne.org/> (June 22-26th, 2016), focusing on Research in Encoding And Decoding of Neural Ensembles, on the neighboring island of Sandorini. DENDRITES 2016 participants are encouraged to consider attending both meetings. FOR FURTHER INFORMATION Please see the conference web site http://dendrites2016.gr/ <http://www.dendrites2016.gr/> or send an email to info(a)dendrites2016.gr <mailto:info@dendrites.gr> -- Panayiota Poirazi, Ph.D. Director of Research Computational Biology Laboratory Institute of Molecular Biology and Biotechnology (IMBB) Foundation of Research and Technology-Hellas (FORTH) Vassilika Vouton, P.O.Box 1385 GR 711 10 Heraklion, Crete, GREECE Tel: +30 2810 391139 <tel:+30%202810%20391139> Fax: +30 2810 391101 <tel:+30%202810%20391101> Εmail: poirazi(a)imbb.forth.gr <mailto:poirazi@imbb.forth.gr> http://www.dendrites.gr Chair http://www.fens.org/Outreach/FENS-Kavli-Network-of-Excellence/

Dec. 16, 2015

Postdoctoral fellowships in computational neuroscience at the University of Washington

by Adrienne Fairhall

We invite applications for the Washington Research Foundation Innovation Postdoctoral Fellowships in Neuroengineering at the University of Washington in Seattle. These fellowships are offered as part of the UW Institute for Neuroengineering, which aims to stimulate research excellence in the development of novel approaches to the understanding and manipulation of brain function. These highly selective fellowships fund research in computational and engineering approaches to neuroscience; joint mentoring between faculty in different disciplines (CS, engineering, mathematics, biology) is strongly encouraged. The fellowships provide two years of funding including a $65,000 annual salary and a $25,000 research stipend. Applications are due by January 15, 2016. Please see http://uwin.washington.edu/post-docs/ for more information.

Dec. 16, 2015

postdoc position with BRAIN project at Emory University

by Jaeger, Dieter

A postdoctoral position is available for working in an NIH funded Obama BRAIN initiative project on the role of the basal ganglia in motor decision making in behaving mice (https://projectreporter.nih.gov/project_info_description.cfm?icde=0&aid=901…) The project aims to elucidate how subcortical structures feed back onto and influence cortical processing. The position will involve multisite recording and optogenetics in behaving mice in the Jaeger lab at Emory University, which provides a strong training environment in computational and systems neuroscience in collaboration with the Georgia Institute of Technology. The successful candidate needs previous electrophysiological experience and strong data analysis skills using Matlab or Python. A PhD in Biomedical Engineering or Neuroscience is preferred. If interested & qualified, please contact djaeger(a)emory.edu. Dieter Jaeger, PhD Professor Department of Biology, Emory University 1510 Clifton Rd., Atlanta, GA 30322 404 727 8139, e-mail: djaeger(a)emory.edu<mailto:djaeger@emory.edu> http://www.biology.emory.edu/research/Jaeger ________________________________ This e-mail message (including any attachments) is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this message (including any attachments) is strictly prohibited. If you have received this message in error, please contact the sender by reply e-mail message and destroy all copies of the original message (including attachments).

Dec. 15, 2015

Postdoc in Computational Neuroscience/ Robotics

by Sen Cheng

A postdoctoral position in computational neuroscience/ robotics is available immediately in the research unit of Prof. Sen Cheng in the Institute for Neural Computing at the Ruhr University Bochum in Germany. For further information see www.rub.de/cns. The postdoc will study spatial navigation and learning in robots using biologically realistic algorithms. The focus will be on understanding the neural mechanisms underlying spatial navigation and learning in mammals, in particular, the role of the hippocampus in these processes. The salary will be on the standard German pay scale of TV-L E13. The full-time position is available immediately for two years with the possibility of extension. Limited teaching in computational neuroscience and/ or robotics is required. Candidates should have a doctoral degree in neuroscience, robotics, computer science, physics, or a related field. Competence in mathematical modeling, and excellent programming skills are mandatory. Familiarity with robotics and computational neuroscience would be a further asset. To apply please send a statement of your motivation and research interests, academic transcripts, and a complete CV to sen.cheng(a)rub.de in a single PDF file. Please, also request from at least two academic referees that they send letters of reference directly to the same email address. The Ruhr University Bochum is committed to equal opportunity. We strongly encourage applications from qualified women and persons with disabilities. --- Prof. Dr. Sen Cheng Ruhr-University Bochum Mercator Research Group "Structure of Memory" Universitaetsstr. 150 44801 Bochum Germany office: GA 04/48 | +49-234- 32 27136 | FAX: +49-234- 32 07136 sen.cheng(a)rub.de | http://www.rub.de/cns

Dec. 15, 2015

BRAIN Initiative post-doctoral position

by Joshua Gold

The Gold lab (http://www.med.upenn.edu/goldlab <http://www.med.upenn.edu/goldlab>) at the University of Pennsylvania is looking for an energetic and talented post-doc to participate in a funded BRAIN Initiative grant studying neural mechanisms of individual differences in learning and decision-making (http://www.nsf.gov/news/news_summ.jsp?cntn_id=135926 <http://www.nsf.gov/awardsearch/showAward?AWD_ID=1533623>). The work will combine psychophysics, single-unit electrophysiology, and computational modeling. A strong background in systems neuroscience is preferred. Anyone interested should contact Joshua Gold directly via e-mail (jigold(a)mail.med.upenn.edu <mailto:jigold@mail.med.upenn.edu>). Please include a CV and cover letter stating your research experience and reasons for applying to this position. Also please be prepared to provide contact information for up to three references upon request. Penn has a rich and interactive environment for both systems and computational neuroscience, with journal clubs, lab meetings, retreats, and other joint activities, many of which are organized by our new Computational Neuroscience Initiative (CNI: http://cni.upenn.edu <http://cni.upenn.edu/>). We also value diversity and seek talented individuals from diverse backgrounds (http://jobs.hr.upenn.edu <http://jobs.hr.upenn.edu/>).

Dec. 14, 2015