January 2015 - Comp-neuro - lists.cnsorg.org

Postdoc Opportunity at Stanford in the Modulation of Neural Circuitry for Cognitive and Emotional Control

by Wei Wu

The Laboratory of Amit Etkin, MD PhD at Stanford Universityis currently accepting applications for a postdoctoral research fellowship focused on understanding and modulating the neural systems underlying cognitive and emotional control in both healthy individuals and patients with a range of psychiatric conditions. Special emphasis is put on use of causal circuit manipulation tools (eg TMS and concurrent TMS and fMRI) as well as a range of cognitive neuroscience paradigms at the behavioral, physiological and neural levels. The successful applicant will have a PhD in Cognitive Neuroscience, Neurophysiology, Psychology, Computer Science, Statistics or related fields. Experience with analysis of fMRI data and/or TMS is required. Additional experience with psychophysiology or programming is a plus. A US Citizenship is also required. Duties will also include manuscript preparation, presentation of findings at conferences, management of research assistants and contribution to the preparation of grants. Laboratory and Stanford resources include research-dedicated 3T and 7T MRI scanners, concurrent TMS/fMRI setups and concurrent TMS/EEG setups. Salary commensurate with experience. More information about our ongoing studies can be found at: http://etkinlab.stanford.edu. To apply, please send a curriculum vitae, a statement describing research interests and relevant background and three letters of recommendations, as well as relevant reprints/preprints of research articles to: Amit Etkin, MD, PhD Department of Psychiatry and Behavioral Sciences Stanford University amitetkin(a)stanford.edu

Jan. 5, 2015

Last Mile: BIOTECHNO 2015 and BIOCOMPUTATION 2015 || May 24 - 29, 2015 - Rome, Italy

by Cristina Pascual

INVITATION: ================= Please consider to contribute to and/or forward to the appropriate groups the following opportunity to submit and publish original scientific results to: - BIOTECHNO 2015, The Seventh International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies - BIOCOMPUTATION 2015, The International Symposium on Big Data and BioComputation The submission deadline is extended to January 23, 2015. Authors of selected papers will be invited to submit extended article versions to one of the IARIA Journals: http://www.iariajournals.org ================= ============== BIOTECHNO 2015 | BIOCOMPUTATION 2015 | Call for Papers =============== CALL FOR PAPERS, TUTORIALS, PANELS BIOTECHNO 2015, The Seventh International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies General page: http://www.iaria.org/conferences2015/BIOTECHNO15.html Submission page: http://www.iaria.org/conferences2015/SubmitBIOTECHNO15.html BIOCOMPUTATION 2015, The International Symposium on Big Data and BioComputation General page: http://www.iaria.org/conferences2015/BIOCOMPUTATION.html Submission page: http://www.iaria.org/conferences2015/BIOCOMPUTATION.html#SubmitAPaper Events schedule: May 24 - 29, 2015 - Rome, Italy Contributions: - regular papers [in the proceedings, digital library] - short papers (work in progress) [in the proceedings, digital library] - ideas: two pages [in the proceedings, digital library] - extended abstracts: two pages [in the proceedings, digital library] - posters: two pages [in the proceedings, digital library] - posters: slide only [slide-deck posted at www.iaria.org] - presentations: slide only [slide-deck posted at www.iaria.org] - demos: two pages [posted at www.iaria.org] - doctoral forum submissions: [in the proceedings, digital library] Proposals for: - mini symposia: see http://www.iaria.org/symposium.html - workshops: see http://www.iaria.org/workshop.html - tutorials: [slide-deck posed on www.iaria.org] - panels: [slide-deck posed on www.iaria.org] Submission deadline: January 23, 2015 Sponsored by IARIA, www.iaria.org Extended versions of selected papers will be published in IARIA Journals: http://www.iariajournals.org Print proceedings will be available via Curran Associates, Inc.: http://www.proceedings.com/9769.html Articles will be archived in the free access ThinkMind Digital Library: http://www.thinkmind.org The topics suggested by the conference can be discussed in term of concepts, state of the art, research, standards, implementations, running experiments, applications, and industrial case studies. Authors are invited to submit complete unpublished papers, which are not under review in any other conference or journal in the following, but not limited to, topic areas. All tracks are open to both research and industry contributions, in terms of Regular papers, Posters, Work in progress, Technical/marketing/business presentations, Demos, Tutorials, and Panels. Before submission, please check and comply with the editorial rules: http://www.iaria.org/editorialrules.html BIOTECHNO 2015 Topics (for topics and submission details: see CfP on the site) Call for Papers: http://www.iaria.org/conferences2015/CfPBIOTECHNO15.html ============================================================ A. Bioinformatics, chemoinformatics, neuroinformatics and applications Bioinformatics (Bioinformatics modeling; Bioinformatics databases; Epidemic models; Informatics and statistics in bio-pharmaceutical research; Machine learning and artificial intelligence in molecular design; Systems biology and metabolic networks; Medical informatics; Genomics informatics; Biostatistics; Structural and functional genomics; Identifying molecular sequence and structure databases; Mechanisms for specifying molecular interactions and structure predictions; Formalisms for gene regulation and expression databases; Algorithms for gene identification and pattern discovery; Techniques for gene expression analysis; Modeling and simulation of biomarkers) Advanced biocomputation technologies (Stochastic modeling; Computational drug discovery; Graph theory and bioinformatics; Biological databases and information retrieval; Experimental studies and results; Application of computational intelligence in medicine and biological sciences (artificial neural networks, fuzzy logic, evolutionary computing, and simulated annealing); High-performance computing as applied to natural and medical sciences; Hardware computing accelerators; Computer-based medical systems (automation in medicine, etc.); Other aspects and applications relating to technological advancements in medicine and biological sciences; Novel applications) Chemoinformatics (Computer-aided drug design; Concepts, methods, and tools for drug discovery; Virtual screening of chemical libraries; ADMET - absorption, distribution, metabolism, excretion, and toxicity; QSAR - quantitative structure-activity relationships; Protein-ligand docking and scoring functions; Chemical similarity and diversity; Chemogenomics in drug discovery; QSPR - quantitative structure-property relationships; Theoretical models in chemical reactivity; Mathematical chemistry and chemical graphs; In silico environmental toxicology; Computer-assisted chemical engineering; Combinatorial chemistry; Graph theory in chemistry; Prediction of drug toxicity; Property prediction; Molecular mechanics and quantum chemical calculations; Modeling and measurements of solid-liquid and vapor-liquid equilibria; Blood-brain barrier penetration; Comparison of the similarity(diversity of chemo-data libraries; Chemoinformatics applications) Bioimaging ( Image processing in medicine and biological sciences; Measurements techniques; Mass spectrometry; Numerical(mathematical approaches; Biological data integration and visualization) Neuroinformatics (Neurosciences; Neurocomputing) B. Computational systems (genetics, biology, and microbiology) Bio-ontologies and semantics (Software environments for bio-computation, bio-informatics, and biomedical applications; Medical informatics; Epidemic models; Biological data mining; Biomedical knowledge discovery; Pattern classification and recognition; Mathematical biology; Graph theory and bio-informatics; Stochastic modeling; Biological databases and information retrieval; Processing mutation information; Archiving of mutation specific information) Biocomputing (Computational biology; Bioengineering; Biomedical image computing and informatics; Biomedical automation and control; Image-based diagnosis and therapy; Modeling and simulation of systems biology; Applications of large-scale bio-systems) Genetics (Gene regulation; Gene expression databases; Gene pattern discovery and identification; Genetic network modeling and inference; Gene expression analysis; RNA and DNA structure and sequencing; Evolution of regulatory genomic sequences; Biological data mining and knowledge discovery; Bio-pattern classification and recognition; Bio-sequence analysis and alignment; Comparative genomics; Structural and functional genomics; Amino acid sequencing) Molecular and Cellular Biology (Protein modeling; Molecular interactions; Metabolic modeling and pathways; Evolution and phylogenetics; Macromolecular structure prediction; Proteomics; Protein folding and fold recognition; Molecular sequence and structure databases; Molecular dynamics and simulation; Molecular sequence classification, alignment and assembly) Microbiology (Bio-nanotechnologies; Self-assembly and self-replication; Global regulatory networks and mechanisms; Microbial propagation and immunity; Microbial therapies; Microbial life under extreme energy limitation; Cellular microbiology and contact systems; Phylogenetics; Genome dynamics; Transmission dynamics and evolution of emerging diseases; Metagenomics and drug resistance; Microbes and alternative energies) C. Biotechnologies and biomanufacturing Fundamentals in biotechnologies (Bioengineering; Bioelectronics; Biomaterials; Bio-films in ecology and medicine; Biometric screening techniques; Biorobotics) Biodevices (Biosensors; Biomechanical devices; Biochips; Biocomputing; Biometrics devices; Specialized biodevices; Nanotechnology for biosystems) Biomedical technologies (Biomedical engineering; Biomedical instrumentation; Biomedical metrology and certification; Biomedical sensors; Biomedical monitoring devices; Biomedical devices with embedded computers; Biomedical integrated systems) Biological technologies (Biological data integration; Image processing in medicine and biological sciences; Biological data visualization; Synthetic biological systems) Biomanufacturing (Manufacturing platforms; Biopharmaceutical industry; Generic biopharmaceuticals; Bioprocess management; Clinical trials; Disposables and product changeover; Upstream and downstream bioprocessing; Technology benchmarks; International regulations) BIOCOMPUTATION 2015 Topics (for topics and submission details: see CfP on the site) CfP: http://www.iaria.org/conferences2015/BIOCOMPUTATION.html#CallForPapers ========================== Big Data and Context-sensitive Computation Big Data and Cloud Technology and Services in BioComputation Big Data, Cloud computing and GPU (Graphical Process Units) for BioComputation Scale-up and high-performance techniques for data-centric BioComputation Big Data and Prediction Computational Models Big Data Computation Applications Big Data and Evolution Models Big Data and BioStatistics Big Data and Personalized Healthcare Computation Big Data in Genome Analytics Big Data and Computation on Illness Patterns/Variations (cancer, diabetes, etc.) Big Data and Donor Information Big Data and Drugs-related Computation Big Data and Health/eHealth/Telemedicine Computation Big Data and Computation in Clinical Context Big Data and BioImage Computation Big Data and Molecular Modeling Big Data and Computational Physics Big Data and Biological Systems Big Data and Scalability of BioComputation Tools Big Data and Trusted Bio-Datasets Big Data BioComputation and Regulator Borders ------------------------ BIOTECHNO 2015 Committee: http://www.iaria.org/conferences2015/ComBIOTECHNO15.html BIOCOMPUTATION 2015 Committee: http://www.iaria.org/conferences2015/BIOCOMPUTATION.html#Committees ===============

Jan. 5, 2015

Okinawa/OIST Computational Neuroscience Course 2015: applications open

by Erik De Schutter

OKINAWA/OIST COMPUTATIONAL NEUROSCIENCE COURSE 2015 Methods, Neurons, Networks and Behaviors June 8 - June 25, 2015 Okinawa Institute of Science and Technology Graduate University, Japan https://groups.oist.jp/ocnc The aim of the Okinawa/OIST Computational Neuroscience Course is to provide opportunities for young researchers with theoretical backgrounds to learn the latest advances in neuroscience, and for those with experimental backgrounds to have hands-on experience in computational modeling. We invite graduate students and postgraduate researchers to participate in the course, held from June 8th through June 25th, 2015 at an oceanfront seminar house of the Okinawa Institute of Science and Technology Graduate University. Applications are through the course web page (https://groups.oist.jp/ocnc) only; they will close February 8th, 2015. Applicants will receive confirmation of acceptance in March. The course has a strong hands-on component based on student proposed modeling or data analysis projects, which are further refined with the help of a dedicated tutor. Applicants are required to propose their project at the time of application. Like in preceding years, OCNC will be a comprehensive three-week course covering single neurons, networks, and behaviors with ample time for student projects. The first week will focus exclusively on methods with hands-on tutorials during the afternoons, while the second and third weeks will have lectures by international experts. We invite those who are interested in integrating experimental and computational approaches at each level, as well as in bridging different levels of complexity. There is no tuition fee. The sponsor will provide lodging and meals during the course and may support travel for those without funding. We hope that this course will be a good opportunity for theoretical and experimental neuroscientists to meet each other and to explore the attractive nature and culture of Okinawa, the southernmost island prefecture of Japan. Invited faculty: • Gordon Arbuthnott (OIST) • Axel Borst (MPI, Münich, Germany) • Erik De Schutter (OIST) • Kenji Doya (OIST) • Eugene Izihikevich (Brain Corporation, USA) • Bernd Kuhn (OIST) • Peter Latham (Gatsby Unit, UCL, UK) • Miguel Nicolelis (Duke University, USA) • Steve Prescott (University of Toronto, Canada) • John Rinzel (New York University, USA) • Jackie Schiller (Technion, Israel) • Greg Stephens (OIST) • Jeff Wickens (OIST) • Taro Toyoizumi (RIKEN BSI, Japan) • Xiao-Jing Wang (New York University, USA) • Wako Yoshida (ATR, Japan)

Jan. 5, 2015

Neural-Inspired Computational Elements workshop and student competition

by Aimone, James Bradley

The 3rd Neural-Inspired Computational Elements (NICE) workshop will be held in Bernalillo, New Mexico between February 23rd and February 25th. This year's meeting will focus on the value proposition of neural inspired computing, with speakers discussing topics in neuroscience, neural-inspired algorithms, neural-inspired hardware, and application drivers. NICE is organized by scientists at Sandia National Laboratories and is co-sponsored by the Department of Energy Office of Science, DAPRA, and IARPA. For an updated speaker list and registration info, please go to http://nice.sandia.gov. STUDENT COMPETITION For this first time this year, we are having a student competition. Go to Student Thesis Competition<https://nm.kip.uni-heidelberg.de/jss/ApplyForThesisAward> (https://nm.kip.uni-heidelberg.de/jss/ApplyForThesisAward) to submit a student thesis abstract and advisor recommendation on a Neuro-inspired Computation related topic. Submissions must be in by January 16th, winners will be announced by January 30th. Three selected students will receive travel support to attend the workshop and have the opportunity to present a 10 minute 'snap overview'. Runner-up notable submissions will be considered for poster presentations during the workshop.

Jan. 4, 2015

postdoctoral position: olfactory coding and holographic optogentics

by Rinberg, Dmitry

Postdoctoral position in the Rinberg (NYU) – Shoham (Technion) labs to study olfactory coding using holographic optogenetics We are seeking a talented postdoctoral researcher for our collaborative BRAIN Initiative project to study behavioral readouts of spatiotemporal codes using holographic optogenetics. The project will advance and apply a new technology for spatiotemporal patterned control of multiple neurons in the peripheral olfactory system and use behavioral responses to test how these patterns are being read. An ideal candidate should have a background in neuroscience, physics and math. Knowledge and experience in computer-generated holography, mutliphoton imaging and/or nonlinear optics are a big plus. The work will be carried out at the NYU Neuroscience Institute with possible visits to the Technion; the candidate will gain both from NYU’s thriving neuroscience community and from the Technion’s excellence in advanced technology development. Interested applicants should send a cover letter, curriculum vitae, and arrange for reference letters to be sent to Dr. Dmitry Rinberg (rinberg(a)nyu.edu<mailto:rinberg@nyu.edu>).

Jan. 4, 2015

CFP: Special Issue on Neurobiologically Inspired Robotics: Enhanced Autonomy Through Neuromorphic Cognition

by Jeff Krichmar

Dear Computational Neuroscientists, I hope some of you will consider submitting to this special issue of Neural Networks (http://www.journals.elsevier.com/neural-networks/call-for-papers/special-is…) Neurobiologically inspired robotics goes by many names: brain-based devices, cognitive robots, neurorobots, and neuromorphic robots, to name a few. The field has grown into an exciting area of research and engineering. The common goal is twofold: Firstly, developing a system that demonstrates some level of cognitive ability can lead to a better understanding of the neural machinery that realizes cognitive function. The often used phrase, “understanding through building”, implies that one can get a deep understanding of a system by constructing physical artifacts that can operate in the real-world. In building and studying neurobiologically inspired robots, scientists must address theories of neuroscience that couple brain, body, and behavior. Secondly, the deep theoretical understanding of cognition, neurobiology and behavior obtained by constructing physical systems, could lead to a system that demonstrates capabilities commonly found in the animal kingdom, but rarely found in artificial systems, most notably their adaptive and flexible autonomous behavior. There have already been some successes that meet these goals. For example, navigation models based on the hippocampus are now deploy! ed on robots that autonomously explore their environment. Machine image processing systems based on visual cortex have been used in a number of unsupervised recognition and perception applications. Robots designed to address impairments due to disorders such as Alzheimer’s disease, autism spectrum disorder, and attentional deficit disorders, are being used as therapeutic and diagnostic tools without the need for constant caretaker supervision. Despite these successes, the field is still in its infancy and basic research is needed. In particular, we are interested in papers that describe: 1) How models of cognitive functions, such as attention, decision-making, learning and memory, perception, and social cognition can be constructed on physical robots. 2) How the neuromorphic devices, which are designed to run neural algorithms with low-power, can advance the construction of autonomous robotics. 3) How the theoretical and engineering lessons learned from constructing neurobiologically inspired robots can transfer to autonomous robots carrying out practical applications. This Special Issue invites papers that address the three broad topics described above. Topics of interest • Adaptive behavior • Active sensing • Artificial empathy • Cortical computing • Developmental robotics • Embodied Cognition • Neuromorphic Engineering • On-line learning and memory systems • Prediction and planning • Socially assistive robotics Guest Editors Jeffrey Krichmar, University of California, Irvine Minoru Asada, Osaka University Jorg Conradt, Technische Universitat München Important Dates Submission due: 1 Feb 2015 Acceptance notification: 1 Aug 2015 Expected publication: 1 Nov 2015 Submission instructions Each paper for submission should be formatted according to the style and length limit of Neural Networks. Please refer complete Author Guidelines at http://www.elsevier.com/journals/neural-networks/0893-6080/guide-for-authors. Note that published papers and those currently under review by other journals or conferences are prohibited. A separate cover letter should be submitted that includes the paper title, the list of all authors and their affiliations, and information of the contact author. Each paper will be reviewed rigorously, and possibly in two rounds, i.e., minor/major revisions will undergo another round of review. Prospective authors are invited to submit their papers directly via the online submission system at http://ees.elsevier.com/neunet/. To ensure that all manuscripts are correctly included into the special issue described, it is important that all authors select “SI: Neurobiological Robotics” when they reach the "Article Type" step in the submission process. Jeff Krichmar Department of Cognitive Sciences 2328 Social & Behavioral Sciences Gateway University of California, Irvine Irvine, CA 92697-5100 jkrichma(a)uci.edu http://www.socsci.uci.edu/~jkrichma

Jan. 2, 2015

ICDL-EpiRob 2015 CFP

by Benjamin Rosman

======================================================== Call for Papers, Tutorials and Thematic Workshops New Conference Feature: BABYBOT CHALLENGE IEEE ICDL-EPIROB 2015 The Fifth Joint IEEE International Conference on Development and Learning and on Epigenetic Robotics Brown University, Providence, Rhode Island, USA August 13-16, 2015 http://www.icdl-epirob.org/ == Conference description The past decade has seen the emergence of a new scientific field that studies how intelligent biological and artificial systems develop sensorimotor, cognitive, emotional and social abilities, over extended periods of time, through dynamic interactions with their physical and social environments. This field lies at the intersection of a number of scientific and engineering disciplines including Neuroscience, Developmental Psychology, Developmental Linguistics, Cognitive Science, Computational Neuroscience, Artificial Intelligence, Machine Learning, and Robotics. Various terms have been associated with this new field such as Autonomous Mental Development, Epigenetic Robotics, Developmental Robotics, etc., and several scientific meetings have been established. The two most prominent conference series of this field, the International Conference on Development and Learning (ICDL) and the International Conference on Epigenetic Robotics (EpiRob), are now joining forces for the fifth time and invite submissions for a joint conference in 2015, to explore and extend the interdisciplinary boundaries of this field. == BABYBOT CHALLENGE -- CASH PRIZES FOR THE TOP SUBMISSIONS We are excited to announce a new ICDL-EpiRob conference feature: the BABYBOT CHALLENGE. The goal of the challenge is to use the tools of developmental robotics to replicate and extend the key findings from one of three selected human-infant studies. Please visit www.icdl-epirob.org in the coming weeks for the full announcement, including the three target studies, details on the submission process, and a description of how the winning submissions will be judged and selected. == Keynote speakers (confirmed) Prof. Dare Baldwin, Dept. of Psychology, University of Oregon, USA Prof. Kerstin Dautenhahn, School of Computer Science, University of Hertfordshire, UK == Call for Submissions We invite submissions for this exciting window into the future of developmental sciences. Submissions which establish novel links between brain, behavior and computation are particularly encouraged. == Topics of interest include (but are not limited to): * the development of perceptual, motor, cognitive, emotional, social, and communication skills in biological systems and robots; * embodiment; * general principles of development and learning; * interaction of nature and nurture; * sensitive/critical periods; * developmental stages; * grounding of knowledge and development of representations; * architectures for cognitive development and open-ended learning; * neural plasticity; * statistical learning; * reward and value systems; * intrinsic motivations, exploration and play; * interaction of development and evolution; * use of robots in applied settings such as autism therapy; * epistemological foundations and philosophical issues. Any of the topics above can be simultaneously studied from the neuroscience, psychology or modeling/robotic point of view. == Submissions will be accepted in several formats: 1. Full six-page paper submissions: Accepted papers will be included in the conference proceedings and will be selected for either an oral presentation or a featured poster presentation. Featured posters will have a 1 minute "teaser" presentation as part of the main conference session and will be showcased in the poster sessions. Maximum two-extra pages can be acceptable for a publication fee of $100 per page. 2. Two-page poster abstract submissions: To encourage discussion of late-breaking results or for work that is not sufficiently mature for a full paper, we will accept 2-page abstracts. These submissions will NOT be included in the conference proceedings. Accepted abstracts will be presented during poster sessions. 3. Tutorials and workshops: We invite experts in different areas to organize either a tutorial or a workshop to be held on the first day of the conference. Tutorials are meant to provide insights into specific topics as well as overviews that will inform the interdisciplinary audience about the state-of-the-art in child development, neuroscience, robotics, or any of the other disciplines represented at the conference. A workshop is an opportunity to present a topic cumulatively. Workshops can be half- or full-day in duration including oral presentations as well as posters. Submission format: two pages including title, list of speakers, concept and target audience. All submissions will be peer reviewed. Submission website through paperplaza at: http://ras.papercept.net == Important dates March 9, 2015, paper submission deadline May 15, 2015, author notification July 1, 2015, final version (camera ready) due August 13th-16th, 2015, conference == Program committee General Chairs: Matthew Schlesinger (Southern Illinois Univ.) Dima Amso (Brown Univ.) Bridge Chairs: Jeffrey Krichmar (UC Irvine) Bertram Malle (Brown University) Program Chairs: Anne Warlaumount (UC Merced) Clemént Moulin-Frier (INRIA) Publications Chairs: Lisa Meeden (Swarthmore College) Publicity Chairs: Lola Cañamero (Univ. of Hertfordshire) Matthias Rolf (Osaka University) Benjamin Rosman (Univ. of the Witwatersrand) Local chairs: David Sobel (Brown University) Thomas Serre (Brown University) Finance chairs: Clayton Morrison (University of Arizona) -- This message is subject to the CSIR's copyright terms and conditions, e-mail legal notice, and implemented Open Document Format (ODF) standard. 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Jan. 2, 2015