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April 2014

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Call for Papers: LDAB@CIBB2014

by Andrea Bracciali

[We apologize if you have received multiple copies of this message] ==================================================== Call for papers Large-scale and HPC data analysis in bioinformatics: Intelligent methods for computational, systems and synthetic biology. 26-28 June 2014 University of Cambridge, UK http://www.cussb.unisr.it/cibb2014/ss.html#LSAHDAIB Special Session of CIBB 2014 (later deadline): Eleventh International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics http://www.cussb.unisr.it/cibb2014/index.html *** Submission deadline: 5th May 2014 *** ==================================================== AIMS and SCOPE Biomedical research is currently facing the Big Data wave created by the huge amount of experiments performed every day in omics sciences. This new situation demands appropriate IT-infrastructures and scalable software to analyse data within an acceptable timespan. Massive parallel clusters, distributed technologies, on-Chip solutions such as GPGPU and Xeon Phi must be exploited with adequate algorithmic solutions to reach their full potential. The aim of this special session is to bring together researchers interested in cutting-edge methods to address the challenges posed by the huge amount of data produced in omics science. The idea is to present the latest advancements concerning High Performance Computing solutions required to treat multi-omics data and the related Big Data paradigms that are needed to manage the large-scale challenges of current computational biology. Examples of relevant areas of interest within this context include - but are not limited to - - Next-Generation Sequencing data analysis and interpretation, - Genomics patterns identification and mining, - Transcriptomics and Proteomics data integration, - Systems Biology models simulation and optimization, - Structural Biology and Molecular Dynamics, - Synthetic Biology circuits design and simulation. SUBMISSION GUIDELINES http://www.cussb.unisr.it/cibb2014/calls.html#submissions Papers should be submitted in PDF format on the Easy Chair conference system. Paper length should be at least 4 pages and should not exceed 6 pages. Papers are required to be structured according to the following five sections: • 1. Scientific background • 2. Material and methods • 3. Results • 4. Conclusion • 5. References (no more than 10) (Please refer to the latex template on the web page for more accurate instructions). Please note that only PDF versions of papers can be accepted, as the proceedings of CIBB will be produced starting from them. A correct submission requires selecting this special session in the submission system. PUBLICATION Each paper will be peer-reviewed and the resulting scores used to determine invitations for oral or poster presentations. Following the conference, an extended version of the presented contributions (12 page format) will be considered for publication in the Springer’s Lecture Notes in Bioinformatics (LNBI) series. Moreover, a selection of the best papers will be considered for pu blication in a special issue of BMC Bioinformatics dedicated to CIBB2014. IMPORTANT DATES Paper submission: 5th May 2014 Acceptance notification: 10th May 2014 Camera ready due: 30th May 2014 Conference: 26th - 28th June 2014 ORGANISERS Andrea Bracciali, University of Stirling, UK Ivan Merelli, CNR-ITB, Italy CONTACTS Andrea Bracciali, University of Stirling, UK Computing Science and Mathematics School of Natural Sciences Stirling University abb(a)cs.stir.ac.uk +44 (0)1786 467446 Ivan Merelli, CNR-ITB, Italy Institute for Biomedical Technologies Consiglio Nazionale delle Ricerche ivan.merelli(a)itb.cnr.it +39 02 26422600

April 1, 2014

Deadline is April 2nd (but site will be open until April 4th): Call for Applications in 2014 Telluride Neuromorphic Cognition Engineering Workshop

by Ralph Etienne-Cummings

Telluride Neuromorphic Cognition Engineering Workshop 2014 Neuromorphic Cognition Engineering Workshop: The 20th Anniversary Edition Telluride, Colorado, June 29th - July 19th, 2014 CALL FOR APPLICATIONS: Deadline is April 2nd, 2014 NEUROMORPHIC COGNITION ENGINEERING WORKSHOP www.ine-web.org Sunday June 29th - Saturday July 19th, 2014, Telluride, Colorado We invite applications for a three-week summer workshop that will be held in Telluride, Colorado.Sunday June 29th - Saturday July 19th, 2014. The application deadline is Wednesday, April 2nd and application instructions are described at the bottom of this document. This is the 20th Anniversary of the Workshop, and ~25 years since the conception of the "Meadian" version of Neuromorphic Engineering. Hence, we plan a celebratory Workshop, where some of the originators and benefactors of the field will participate in discussions of the successes and challenges over the past 25 years and prognosticate the potential contributions for the next 25 years. The 2014 Workshop and Summer School on Neuromorphic Engineering is sponsored by the National Science Foundation, Institute of Neuromorphic Engineering, Qualcomm Corporation, The EU-Collaborative Convergent Science Network (CNS-II), University of Maryland - College Park, Institute for Neuroinformatics - University of Zurich and ETH Zurich, Georgia Institute of Technology, Johns Hopkins University, Boston University, University of Western Sydney and the Salk Institute. Directors: Cornelia Fermuller, University of Maryland, College Park Ralph Etienne-Cummings, Johns Hopkins University Shih-Chii Liu, Institute of Neuroinformatics, UNI/ETH Zurich, Switzerland Timothy Horiuchi, University of Maryland, College Park Workshop Advisory Board: Andreas Andreou, Johns Hopkins University Andre van Schaik, University Western Sydney, Australia Avis Cohen, University of Maryland Barbara Shinn-Cunningham, Boston University Giacomo Indiveri, Institute of Neuroinformatics, Uni/Eth Zurich, Switzerland Jonathan Tapson, University Western Sydney, Australia Malcolm Slaney, Microsoft Research Jennifer Hasler, Georgia Institute of Technology Rodney Douglas, Institute of Neuroinformatics, Uni/Eth Zurich, Switzerland Shihab Shamma, University of Maryland Tobi Delbruck, Institute of Neuroinformatics, Uni/Eth Zurich, Switzerland Previous year workshop can be found at: ine-web.org/workshops/workshops-overview/index.htmland the workshop wiki is athttps://neuromorphs.net/ GOALS: Neuromorphic engineers design and fabricate artificial neural systems whose organizing principles are based on those of biological nervous systems. Over the past 18 years, this research community has focused on the understanding of low-level sensory processing and systems infrastructure; efforts are now expanding to apply this knowledge and infrastructure to addressing higher-level problems in perception, cognition, and learning. In this 3-week intensive workshop and through the Institute for Neuromorphic Engineering (INE), the mission is to promote interaction between senior and junior researchers; to educate new members of the community; to introduce new enabling fields and applications to the community; to promote on-going collaborative activities emerging from the Workshop, and to promote a self-sustaining research field. FORMAT: The three week summer workshop will include background lectures on systems and cognitive neuroscience (in particular sensory processing, learning and memory, motor systems and attention), practical tutorials on emerging hardware design, mobile robots, hands-on projects, and special interest groups. Participants are required to take part and possibly complete at least one of the projects proposed. They are furthermore encouraged to become involved in as many of the other activities proposed as interest and time allow. There will be two lectures in the morning that cover issues that are important to the community in general. Because of the diverse range of backgrounds among the participants, some of these lectures will be tutorials, rather than detailed reports of current research. These lectures will be given by invited speakers. Projects and interest groups meet in the late afternoons, and after dinner. In the early afternoon there will be tutorials on a wide spectrum of topics, including analog VLSI, mobile robotics, vision and auditory systems, central-pattern-generators, selective attention mechanisms, cognitive systems, etc. 2014 TOPIC AREAS: Human Auditory Cognition: Acoustic Priming, Imagination and Attention. Project Leaders: Shihab Shamma (UM-College Park), Malcolm Slaney (Microsoft), Edward Lalor (Trinity College, Dublin), Barbara Shinn-Cunningham (Boston U) Motion and Action Processing on Wearable Devices Project Leaders: Michael Pfeiffer (INI-UZH), Ryad Benosman (UPMC, Paris), Garrick Orchard (NUS, Singapore), and Cornelia Fermüller (UMCP) Planning with Dynamic Neural Fields: from Sensorimotor Dynamics to Large-Scale behavioral Search Project Leaders: Yulia Sandamirskaya (RUB, Bochum) and Erik Billing (U. Skovde) Neuromorphic Olympics Project Leaders: Jorg Conradt (TUM, Munich) and Terry Stewart (U. Waterloo) Embodied Neuromorphic Real-World Architectures of Perception, Cognition and Action Project Leaders: Andreas Andreou (JHU) and Paul Verschure (UPF, Barcelona) Terry Sejnowski (Salk Institute) - Computational Neuroscience (invitational mini-workshop) LOCATION AND ARRANGEMENTS: The summer school will take place in the small town of Telluride, 9000 feet high in southwest Colorado, about 6 hours drive away from Denver (350 miles). Great Lakes Aviation and America West Express airlines provide daily flights directly into Telluride. All facilities within the beautifully renovated public school building are fully accessible to participants with disabilities. Participants will be housed in ski condominiums, within walking distance of the school. Participants are expected to share condominiums. The workshop is intended to be very informal and hands-on. Participants are not required to have had previous experience in analog VLSI circuit design, computational or machine vision, systems level neurophysiology or modeling the brain at the systems level. However, we strongly encourage active researchers with relevant backgrounds from academia, industry and national laboratories to apply, in particular if they are prepared to work on specific projects, talk about their own work or bring demonstrations to Telluride (e.g. robots, chips, software). Wireless internet access will be provided. Technical staff present throughout the workshops will assist with software and hardware issues. We will have a network of PCs running LINUX and Microsoft Windows for the workshop projects. We encourage participants to bring along their personal laptop. No cars are required. Given the small size of the town, we recommend that you do not rent a car. Bring hiking boots, warm clothes, rain gear, and a backpack, since Telluride is surrounded by beautiful mountains. Unless otherwise arranged with one of the organizers, we expect participants to stay for the entire duration of this three week workshop. FINANCIAL ARRANGEMENTS: Notification of acceptances will be mailed out around the April 15th, 2014. The Workshop covers all your accommodations and facilities costs for the 3 weeks duration. You are responsible for your own travel to the Workshop, however, sponsored fellowships will be available as described below to further subsidize your cost. Registration Fees: For expenses not covered by federal funds, a Workshop registration fee is required. The fee is $1250 per participant for the 3-week Workshop. This is expected from all participants at the time of acceptance. Accommodations: The cost of a shared condominium, typically a bedroom in a shared condo for senior participants or a shared room for students, will be covered for all academic participants. Upgrades to a private rooms or condos will cost extra. Participants from National Laboratories and Industry are expected to pay for these condominiums. Fellowships: This year we will offer two Fellowships to subsidize your costs: Qualcomm Corporation Fellowship: Three non-corporate participants will have their accommodation and registration fees ($2750) directly covered by Qualcomm, and will be reimbursed for travel costs up to $500. Additional generous funding from Qualcomm will provide $5000 to help organize and stage the Workshop. EU-CSNII Fellowship (http://csnetwork.eu/) which is funded by the 7th Research Framework Program FP7-ICT-CSNII-601167: The top 8 EU applicants will be reimbursed for their registration fees ($1250), subsistence/travel subsidy (up to Euro 2000) and accommodations cost ($1500). The registration and accommodation costs will go directly to the INE (the INE will reimburse the participant's registration fees after receipt from CSNII), while the subsistence/travel reimbursement will be provided directly to the participants by the CSNII at the University of Pompeu Fabra, Barcelona, Spain. HOW TO APPLY: Applicants should be at the level of graduate students or above (i.e. postdoctoral fellows, faculty, research and engineering staff and the equivalent positions in industry and national laboratories). We actively encourage women and minority candidates to apply. Anyone interested in proposing or discussing specific projects should contact the appropriate topic leaders directly. The application website is (after February 7th, 2014): ine-web.org/telluride-conference-2014/apply-info Application information needed: Contact email address. First name, Last name, Affiliation, valid e-mail address. Curriculum Vitae (a short version, please). One page summary of background and interests relevant to the workshop, including possible ideas for workshop projects. Please indicate which topic areas you would most likely join. Two letters of recommendation (uploaded directly by references). Applicants will be notified by e-mail. 7th February, 2014 - Applications accepted on website 2nd April, 2014 - Applications Due 15th April, 2014 - Notification of Acceptance -- Ralph Etienne-Cummings, PhD, FIEEE Professor Department of Electrical and Computer Engineering Computational Sensor Motor Systems Lab

April 1, 2014