November 2014 - Comp-neuro - lists.cnsorg.org

Doctoral studies in Computational/Theoretical Neuroscience at NYU

by Eero Simoncelli

New York University is home to a thriving interdisciplinary community of researchers using computational and theoretical approaches in neuroscience. We are interested in exceptional PhD candidates with strong quantitative training (e.g., physics, mathematics, engineering) coupled with a clear interest in brain sciences. A listing of faculty, sorted by their primary departmental affiliation, is given below. Doctoral programs are flexible, allowing students to pursue research across departmental boundaries. Nevertheless, admissions are handled separately by each department, and students interested in pursuing graduate studies should submit an application to the program that best fits their goals and interests. ** Center for Neural Science (CNS) (deadline: 1 December) [http://www.cns.nyu.edu/doctoral/] [Graduate studies in Neuroscience across NYU: http://www.neuroscience.nyu.edu/] * Andre A. Fenton - Molecular, neural, behavioral, and computationalaspects of memory. * Paul W. Glimcher - Decision-making in humans and animals. Neuroeconomics. * Roozbeh Kiani - Vision and decision-making. * Wei Ji Ma (also in Psychology) - Perception, working memory, and decision making. * Tony Movshon - Vision and visual development. * Bijan Pesaran - Neuronal dynamics and decision making. * Alex Reyes - Functional interactions of neurons in a network. * John Rinzel (also in Mathematics) - Biophysical mechanisms and theory of neural computation. * Nava Rubin - Visual perception and the neural basis of vision. * Robert Shapley - Visual physiology and perception. * Eero Simoncelli - Computational vision and audition. * Xiao-Jing Wang - Computational neuroscience, decision-making and working memory, neural circuits. ** Neuroscience and Physiology program, School of Medicine (deadline: 1 December) [http://neuroscience.med.nyu.edu/training-programs/graduate-program-neurosci…] [Graduate studies in Neuroscience across NYU: http://www.neuroscience.nyu.edu/] * Gyorgy Buzsaki - Rhythms in neural networks. * Dmitry Rinberg - Sensory information processing in the behaving animal. * Mario Svirsky - Auditory neural prostheses; experimental/computational studies of speech production/perception. ** Psychology, Cognition & Perception program (deadline: 12 December) [http://www.psych.nyu.edu/programs/cp/] * Nathaniel Daw (also in CNS) - Models of decision-making and neuromodulation. * Todd Gureckis - Memory, learning, and decision processes. * David Heeger (also in CNS) - fMRI, computational neuroscience, vision, attention. * Michael Landy - Computational approaches to vision. * Laurence Maloney - Mathematical approaches to psychology and neuroscience. * Gary Marcus - Origins of the human mind. * Denis Pelli - Visual object recognition. * Jonathan Winawer - Visual perception and memory. ** Mathematics (deadline: 18 December ) [http://math.nyu.edu/degree/phd/] * David Cai - Nonlinear stochastic behavior in physical and biological systems. * David McLaughlin - Nonlinear wave equations, computational visual neuroscience. * Aaditya Rangan - computational neurobiology, numerical analysis. * Charles Peskin - Mathematical biology. * Michael Shelley - Modeling and large-scale computation, computational visual neuroscience. * Daniel Tranchina - Information processing in the retina. ** Computer Science (deadline: 12 December) [http://www.cs.nyu.edu/web/Research/Areas/graphicsvisionui.html] * Davi Geiger - Computational vision and learning. * Yann LeCun - machine learning, hierarchical visual processing, robotics. ** Electrical and Computer Engineering, Poly campus, Brooklyn (deadline: 15 December) [http://www.poly.edu/academics/programs/electrical-engineering-phd] * Jonathan Viventi - Brain-computer interfaces and brain recording technologies. ** Economics (deadline: 18 December) [http://econ.as.nyu.edu/page/phd] * Andrew Caplin - Economic theory, neurobiology of decision. * Andrew Schotter - Experimental economics, game theory, neurobiology of decision.

Nov. 16, 2014

[Call for workshops] IJCNN 2015, Killarney, Irelan, 12-17 july 2015

by Pierre-Yves Oudeyer

Call for Workshops, IJCNN 2015 Deadline: December 15th, 2014 Location: Killarney, Ireland Date of events: 12-17 july 2015 Web: http://www.ijcnn.org/call-for-workshops Post-conference workshops at IJCNN offer a unique opportunity for in-depth discussions of specific topics in neural networks and computational intelligence. The workshops should be moderated by scientists or professionals who has significant expertise and /or whose recent work has had a significant impact within their field. IJCNN 2015 will emphasize emerging and growing areas of computational intelligence. Each workshop has a duration of 3 or 6 hours. The format of each workshop will be up to the moderator, and can include interactive presentations as well as panel discussions among participants. These interactions should highlight exciting new developments and current research trends to facilitate a discussion of ideas that will drive the field forward in the coming years. Workshop organizers can prepare various materials including handouts or electronic resources that can be made available for distribution before or after the meeting. Researchers interested in organizing workshops are invited to submit a formal proposal. A form for submitting proposals is provided on the web-page http://www.ijcnn.org/call-for-workshops Any questions regarding this proposal can be asked to the Workshop Chair: Pierre-Yves Oudeyer, INRIA, France. email: pierre-yves.oudeyer(a)inria.fr Pierre-Yves Oudeyer Inria, France http://www.pyoudeyer.com

Nov. 15, 2014

Tenure-track position in vertebrate neurophysiology

by Holmes, William

Tenure-Track Position in Vertebrate Neurophysiology The Neuroscience Program in the Department of Biological Sciences at Ohio University invites applications for a full time tenure-track position in Vertebrate Neurophysiology. Candidates should have expertise in vertebrate electrophysiology, broadly defined, and interests in computational modeling approaches to enable interaction with faculty in Ohio University's interdisciplinary Quantitative Biology Institute (QBI). Candidates who combine electrophysiology and modeling approaches are especially encouraged to apply. Candidates are expected to have a PhD or equivalent degree, relevant postdoctoral training, and evidence of scholarly research. The successful candidate will be expected to develop an independent and vibrant extramurally funded research program, participate in undergraduate and graduate teaching, and mentor undergraduate and graduate students, including those in the Honors Tutorial College Neuroscience major. Primary teaching responsibilities include an upper level/graduate course in Human Neuroscience and a non-majors functional anatomy course, which covers the musculoskeletal system and its control by the nervous system. The application should include a curriculum vitae, a statement of research interests including future plans and a statement of teaching philosophy. Applications must be electronically uploaded to https://www.ohiouniversityjobs.com/postings/11999. In addition, candidates will be asked to key in contact information including email addresses for at least three references. Reference providers will receive an auto-generated email request including a quick-link by which to upload a letter of reference. The position will remain open until filled. For full consideration, applications must be received by January 2, 2015 (11:59 p.m. EST). Ohio University is committed to creating a respectful and inclusive educational and workplace environment. Ohio University is an equal access/equal opportunity and affirmative action employer with a strong commitment to building and maintaining a diverse workforce. Women, persons of color, persons with disabilities, and veterans are encouraged to apply.

Nov. 15, 2014

Deadline extension | ALLDATA 2015 || April 19 - 23, 2015 - Barcelona, Spain

by Cristina Pascual

INVITATION: ================= Please consider to contribute to and/or forward to the appropriate groups the following opportunity to submit and publish original scientific results to ALLDATA 2015. The submission deadline is December 8, 2014. Authors of selected papers will be invited to submit extended article versions to one of the IARIA Journals: http://www.iariajournals.org ================= ============== ALLDATA 2015 | Call for Papers =============== CALL FOR PAPERS, TUTORIALS, PANELS ALLDATA 2015, The First International Conference on Big Data, Small Data, Linked Data and Open Data April 19 - 23, 2015 - Barcelona, Spain General page: http://www.iaria.org/conferences2015/ALLDATA15.html Call for Papers: http://www.iaria.org/conferences2015/CfPALLDATA15.html Submission page: http://www.iaria.org/conferences2015/SubmitALLDATA15.html Contributions: - regular papers [in the proceedings, digital library] - short papers (work in progress) [in the proceedings, digital library] - ideas: two pages [in the proceedings, digital library] - extended abstracts: two pages [in the proceedings, digital library] - posters: two pages [in the proceedings, digital library] - posters: slide only [slide-deck posted at www.iaria.org] - presentations: slide only [slide-deck posted at www.iaria.org] - demos: two pages [posted at www.iaria.org] - doctoral forum submissions: [in the proceedings, digital library] Proposals for: - mini-symposia: see http://www.iaria.org/symposium.html - workshops: see http://www.iaria.org/workshop.html - tutorials: [slide-deck posed on www.iaria.org] - panels: [slide-deck posed on www.iaria.org] Submission deadline: December 8, 2014 Sponsored by IARIA, www.iaria.org Extended versions of selected papers will be published in IARIA Journals: http://www.iariajournals.org Print proceedings will be available via Curran Associates, Inc.: http://www.proceedings.com/9769.html Articles will be archived in the free access ThinkMind Digital Library: http://www.thinkmind.org The topics suggested by the conference can be discussed in term of concepts, state of the art, research, standards, implementations, running experiments, applications, and industrial case studies. Authors are invited to submit complete unpublished papers, which are not under review in any other conference or journal in the following, but not limited to, topic areas. All tracks are open to both research and industry contributions, in terms of Regular papers, Posters, Work in progress, Technical/marketing/business presentations, Demos, Tutorials, and Panels. Before submission, please check and comply with the editorial rules: http://www.iaria.org/editorialrules.html ALLDATA 2015 Topics (topics and submission details: see CfP on the site) BIG DATA Big data foundations; Big data understanding (knowledge discovery, learning, consumer intelligence); Big data semantics, search and mining; Big data processing and transformations; Big data handling, simulation, visualization, modeling tools, and algorithms; Managing big data (large-scale, integration, etc.); Unknown in large Data Graphs; Reasoning on Big data; Big data analytics for prediction; Applications of Big data (health, financial, social, weather forecasting, etc.; Business-driven Big data; Big data and cloud technologies; Technologies handling Big data; High performance computing on Big data; Big data persistence and preservation; Big data protection, integrity and privacy ; Big data toolkits SMALL DATA Social networking small data; Relationship between small data and big data; Statistics on Small data; Handling Small data sets; Predictive modeling methods for Small data sets; Small data sets versus Big Data sets; Small and incomplete data sets; Normality in Small data sets; Confidence intervals of small data sets; Causal discovery from Small data sets; Deep Web and Small data sets; Small datasets for benchmarking and testing; Validation and verification of regression in small data sets; Small data toolkits LINKED DATA RDF and Linked data; Deploying Linked data; Linked data and Big data; Linked data and Small data; Evolving the Web into a global data space via Linked data; Practical semantic Web via Linked data; Structured dynamics and Linked data sets; Quantifying the connectivity of a semantic Linked data; Query languages for Linked data; Access control and security for Linked data; Anomaly detection via Linked data; Semantics for Linked data; Enterprise internal data 'silos' and Linked data; Traditional knowledge base and Linked data; Knowledge management applications and Linked data OPEN DATA Open data structures and algorithms; Designing for Open data; Open data and Linked Open data; Open data government initiatives; Big Open data; Small Open data; Challenges in using Open data (maps, genomes, chemical compounds, medical data and practice, bioscience and biodiversity); Linked open data and Clouds; Private and public Open data; Culture for Open data or Open government data; Data access, analysis and manipulation of Open data; Open addressing and Open data; Specification languages for Open data; Legal aspects for Open data ---------------------------------- ALLDATA 2015 Chairs Mark Balas, Embry-Riddle Aeronautical University in Daytona Beach, USA Andreas Schmidt, University of Applied Sciences Karlsruhe | Karlsruhe Institute of Technology, Germany Fabrice Mourlin, Universit� Paris-Est Cr�teil Val de Marne, France Dan Tamir, Texas State University, USA Yeh-Ching Chung, National Tsing Hua University, Taiwan Committee: http://www.iaria.org/conferences2015/ComALLDATA15.html ================================================

Nov. 13, 2014

Open positions in Computational Neuroscience - visit the Bernstein Network at booth #3235 at SfN 2014!

by Kerstin Schwarzwälder

Dear all, as in past years, the Bernstein Network Computational Neuroscience will exhibit at the SfN Meeting 2014. Please find us at the "Neuroscience in Germany" booth #3235. The exhibition presents the network’s research areas, study and training opportunities and job announcements. We look forward to welcoming you at booth #3235! Best regards, Kerstin Schwarzwaelder -- Dr. Kerstin Schwarzwälder Bernstein Coordination Site of the National Bernstein Network Computational Neuroscience Albert Ludwigs University Freiburg Hansastr. 9A 79104 Freiburg Germany phone: +49 761 203 9594 fax: +49 761 203 9585 schwarzwaelder(a)bcos.uni-freiburg.de www.nncn.de Twitter: NNCN_Germany <http://twitter.com/NNCN_Germany> YouTube: Bernstein TV <http://www.youtube.com/user/BernsteinNetwork> Facebook: Bernstein Network Computational Neuroscience, Germany <https://www.facebook.com/BernsteinNetwork> LinkedIn: Bernstein Network Computational Neuroscience, Germany <http://www.linkedin.com/company/bernstein-network-computational-neuroscienc…>

Nov. 13, 2014

[Jobs] Postdoctoral Position in Hong Kong

by Wutao Lou

*Postdoctoral Position in Research Centre for Medical Image Computing at The Chinese University of Hong Kong* Inquiries and applications are invited from highly productive, creative and ambitious young scientists for a Postdoctoral Fellowship Post in the Research Centre of Medical Imaging Computing at The Chinese University of Hong Kong! We are recruiting one highly motivated postdoctoral scientist in the field of neuroimaging to work on the funded project for multimodal neuroimaging (fMRI, DTI, EEG etc.) analysis of the brain network. The post will be available from 1th January 2015 or as soon as possible thereafter for two years with salary around 30,000 HKD/month. The applicant should have a PhD degree in neuroscience, engineering, or related disciplines from world-renowned institutions. Abilities in critical thinking, independent research, and communication with multidisciplinary colleagues are required. Qualified applicants are welcome to send CV to Dr. Defeng Wang dfwang(a)cuhk.edu.hk.

Nov. 12, 2014

GENESIS 2.4 final release now available

by Dave Beeman

The November 2014 GENESIS 2.4 release is the first major revision of the GENESIS 2 neural simulator since the "final" release of GENESIS 2.3 in March 2006. Afterwards, development efforts shifted towards GENESIS 3 (G-3), a 21st century neural simulator without the limitations of GENESIS 2 and other simulators that were developed in the late 1980's and 90's. At this point, G-3 is still in the development stage. Although GENESIS 2.3 was intended to be the last release of the GENESIS 2 series, it has continued to used and to evolve, with modifications needed to efficiently implement synaptic plasticity in large networks and many contributions from users. This has made it necessary for a new November 2014 GENESIS 2.4 release. This new release is now avalable for download from the GENESIS 2 website http://genesis-sim.org/GENESIS/. If any of you will be attending SfN, you can find out more about it at my poster 99.09 (TT88) on Sat, Nov. 15, 2014, 1:00 PM - 5:00 PM The GENESIS 2.4 release includes: * The 'stdp_rules' object, documentation, and Scripts for implementing spike timing dependent plasticity in networks of hsolved cells * New network connection commands allow distance-dependent connection probabilities and/or weights, or the use of periodic boundary conditions for network connectivity. * The chemesis library for modeling second messengers and calcium dynamics * Various user-contributed bug-fixes, utilities, and improvements. * A new autoconf-based build system, so that a simple "./configure" command will create the appropriate Makefile. This has been tested under recent Linux and Mac OSX versions. The older method is also available for platforms not supported by autoconf. * HTML indexing in the 'genesis' directory and subdirectories, for easy browsing of the GENESIS directory system and documentation. * New tutorial Scripts for chemesis, gpython-tools, purkinje, stdp_rules, VAnet2 Dave Beeman ---------------------------------------------------------------------------- Prof. David Beeman, GENESIS Users Group email: genesis(a)genesis-sim.org - dbeeman@.colorado.edu GENESIS WWW site: http://www.genesis-sim.org/GENESIS/ ----------------------------------------------------------------------------

Nov. 12, 2014

[SfN] Computational Neuroscience Social at SfN on Tuesday, November 18

by viola

Dear Colleagues, We write to call your attention to the upcoming computational neuroscience social at the SfN in Washington, DC next week. ** Join us for an evening with elegant models, great spirits, networking theories, and quadrillions of action potentials! Reunite with old friends, make new ones, mingle with top researchers and special guests, and learn about upcoming CompNeuro events. Everyone is welcome! *Special Guests* William Bialek, Kim Blackwell, Nicolas Brunel, Sophie Deneve,Gaute Einevoll, Boris Gutkin, Kenneth Harris, Dietmar Plenz,John Rinzel, Erik De Schutter, Idan Segev, Friedrich T. Sommer, and Tatjana Tchumatchenko We are pleased to confirm the participation of our guest of honor, *Wilfrid Rall.* ** Please feel welcome to *advertise* your summer schools, conferences, tool boxes, journals, associations, or jobs in the field of computational neuroscience in the form of flyers or posters (sugg. max A3, for jobs max A4, poster boards provided), and/or have representative available for informal discussion. *Location: *Renaissance Washington, DC: Renaissance East *Time:* Tuesday, November 18, 6:45-8:45 PM ** Hope to see you in DC! Eilif Muller Viola Priesemann --- Dr. Eilif Muller EPFL - Blue Brain Project Lausanne, Switzerland http://bluebrain.epfl.ch/page-77926-en.html Dr. Viola Priesemann Max Planck Institute for Dynamics and Self-Organization Goettingen, Germany http://www.nld.ds.mpg.de/people/priesemann -- please use my new e-Mail: viola(a)nld.ds.mpg.de MPI for Dynamics and Self-Organization, Göttingen www.nld.ds.mpg.de/people/priesemann

Nov. 11, 2014

Call for Applications: Bernstein Award for Computational Neuroscience 2015

by Kerstin Schwarzwälder

Dear colleagues, I would like to bring to your attention that for the tenth time, the German Federal Ministry of Education and Research (BMBF) has announced an open call for applications for the "Bernstein Award". The "Bernstein Award for Computational Neuroscience" is endowed with up to 1.25 Mio € for a period of five years and allows young scientists of all nationalities to establish an independent research group at a German university or research institution. The BMBF announcement can be found under the following links: German version <http://www.gesundheitsforschung-bmbf.de/de/2476.php> English version <http://www.gesundheitsforschung-bmbf.de/_media/Bernstein_Award_2015_Call_fo…> Posters to announce the Bernstein Award locally can be downloaded from here: German version <http://www.nncn.de/pdfs/poster_ausschreibung_bernsteinpreis2015_de> English version <http://www.nncn.de/pdfs/poster_ausschreibung_bernsteinpreis2015_en> Application deadline is April 15, 2015. Kind regards, Kerstin Schwarzwälder -- Dr. Kerstin Schwarzwälder Bernstein Coordination Site of the National Bernstein Network Computational Neuroscience Albert Ludwigs University Freiburg Hansastr. 9A 79104 Freiburg Germany phone: +49 761 203 9594 fax: +49 761 203 9585 schwarzwaelder(a)bcos.uni-freiburg.de www.nncn.de Twitter: NNCN_Germany <http://twitter.com/NNCN_Germany> YouTube: Bernstein TV <http://www.youtube.com/user/BernsteinNetwork> Facebook: Bernstein Network Computational Neuroscience, Germany <https://www.facebook.com/BernsteinNetwork> LinkedIn: Bernstein Network Computational Neuroscience, Germany <http://www.linkedin.com/company/bernstein-network-computational-neuroscienc…>

Nov. 11, 2014

Release of MOOSE 3.0.0 "Kheer Kadam"

by U.S.Bhalla

We announce the release of MOOSE 3.0.0 "Kheer Kadam" Websites: http://moose.ncbs.res.in, http://sourceforge.net/projects/moose MOOSE is the Multiscale Object-Oriented Simulation Environment. It is designed to simulate neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, circuits, and large networks. MOOSE can operate at many levels of detail, from stochastic chemical computations, to multicompartment single-neuron models, to spiking neuron network models. There are several big changes in 3.0.0:: - Major feature developments for multiscaling, including deterministic reaction-diffusion calculations, a substantial set of classes for Leaky Integrate-and-Fire neuronal networks, and abstract plastic synapses. - Extensive example-based documentation in a new MOOSE Cookbook. - An entirely new and faster messaging system. - An evolution of the Python interface to use object arrays. - Automatic scheduling of all objects upon creation. This release also has a reworked version of the GUI, which is currently in alpha but can be used to run and build kinetic models. About the name: Kheer Kadam is a sweet from Bengal. It has a soft white, dry and sometimes powdery outer layer with a pink or white spongy interior soaked in syrup. Try one! Upi Bhalla will give a talk on MOOSE at the Neuroscience Gateway Workshop at SfN 2014 on Saturday, Nov. 15, 2014. See http://www.nsgportal.org/workshop.html With best regards, The MOOSE team: Subhasis Ray, Harsha Rani, Aditya Gilra, Aviral Goel, Dilawar Singh, Upi Bhalla

Nov. 11, 2014