- Comp-neuro - lists.cnsorg.org

PhD position in Göttingen: Optogenetics in the Retina and Computational Neuroscience
by Gollisch, Tim 10 Dec '24

10 Dec '24

A PhD position is available in the lab of Tim Gollisch at the University Medical Center Göttingen, Germany. The PhD project will investigate how optogenetics can be used for vision restoration therapy to treat blindness. The work will involve multielectrode arrays to record spiking activity from isolated retinas of mice that express light-sensitive ion channels in retinal neurons. Furthermore, computational tools will be used for model-driven data analysis and assessment of neural coding under optogenetic stimulation. Prior experience with electrophysiology or computational analyses/computer programming will be considered advantageous for the application. The position will be available starting April 1, 2025, at the earliest. The project is part of the newly funded Collaborative Research Center "Disease Mechanisms and Functional Restoration of Sensory and Motor Systems" in Göttingen and will be embedded in a lively research environment focusing on bringing basic research closer to clinical applications. There will also be connections to the newly established Else Kröner Fresenius Center for Optogenetic Therapies (https://ekfz.uni-goettingen.de) in Göttingen as well as to the Bernstein Center for Computational Neuroscience Göttingen. To get a better idea about the research group, see https://www.retina.uni-goettingen.de/. To apply, send an email to Tim Gollisch (tim.gollisch(a)med.uni-goettingen.de<mailto:tim.gollisch@med.uni-goettingen.de>), including your CV, a statement of motivation, and contact details for two letters of recommendation. The University Medical Center Göttingen is an equal opportunities employer, and women are especially encouraged to apply. Applicants with disabilities and equal qualifications will be given preferential treatment.

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Neurotheory postdoc opportunities in San Diego
by Ann Kennedy 08 Dec '24

08 Dec '24

The Kennedy lab is recruiting for multiple funded postdoctoral positions in theoretical and computational neuroscience, following our recent lab move to Scripps Research in sunny San Diego, California. Ongoing projects in the lab span topics in reservoir computing, reinforcement learning/control theory analysis of complex behavior, neuromechanical whole-organism modeling, computational behavior analysis, and joint analysis/modeling of neural and behavioral data collected in socially interacting animals. We have newly acquired funding to characterize progression of behavioral phenotypes in Parkinson’s, to model cellular/circuit mechanisms underlying internal state-dependent changes in neural population dynamics, and to characterize the neural and behavioral dynamics of pairs of interacting animals across multiple species. We also have openings for machine learning work in imitation learning/generative modeling of mouse social interactions using a massive 15-lab dataset. Projects are flexible and can be tailored to applicants’ research and training goals, and there are abundant opportunities for new collaboration with local experimental groups. San Diego has a fantastic research community and very high quality of life, with excellent support for international students at Scripps. Our campus is located at the Pacific coast, at the northern edge of UCSD not far from the Salk Institute. The Neuroscience department at Scripps is a powerhouse in the study of the nervous system’s sensing of and interaction with the rest of the body, making it an ideal environment for the study of internal state-dependent modulation of behavior. We offer competitive postdoctoral stipends that reflect coastal cost-of-living expectations and include a relocation bonus, with research professorship positions available for qualified applicants. More information about the lab at https://www.kennedylab.org. Please email Ann Kennedy akennedy(a)scripps.edu<mailto:akennedy@scripps.edu> with inquiries. Ann Kennedy Associate Professor Dorris Neuroscience Center The Scripps Research Institute La Jolla, CA 92037 kennedylab.org<https://www.kennedylab.org/>

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World wide VVTNS series: Wednesday, December 11, 2024, at 11:00 am EST| Noam Sadon-Grosman ELSC, The Hebrew University of Jerusalem
by David Hansel 08 Dec '24

08 Dec '24

[image: VVTNS.png] https://www.wwtns.online <https://streaklinks.com/A9c7PbbpKY7PxB6PaAJWGD3-/https%3A%2F%2Fwww.wwtns.on…> - on twitter: wwtns@TheoreticalWide You are cordially invited to the lecture given by Noam Sadon-Grosman ELSC, The Hebrew University of Jerusalem on the topic of Somatomotor to Higher Order Cognition - The Detailed Organization of the Human Cerebellum that implement computation The lecture will be held on zoom on Wednesday, December 11, 2024, at *11:00 am EST * To receive the zoom link: https://www.wwtns.online/register-page *Abstract: * The cerebellum is long known for its somatomotor functions. Recent evidence has converged to suggest that major portions of the human cerebellum are linked to cognitive and affective functions. In this talk, I will present new insights into the functional organization of the human cerebellum. Our findings reveal three distinct somatomotor representations, including a newly identified third map that is spatially dissociated from the two well-established body representations. Between these body representations, a large megacluster extending across Crus I/II was consistently found with subregions linked to higher-order cerebral association networks. Within this megacluster, specific regions responded to domain-flexible cognitive control, while juxtaposed regions differentially responded to language, social, and spatial/episodic task demands. Similarly organized clusters also exist in the caudate consistent with the presence of multiple basal ganglia–cerebellar–cerebral cortical circuits that maintain functional specialization across their entire distributed extents. *About VVTNS : Launched as the World Wide Theoretical Neuroscience Seminar (WWTNS) in November 2020 and renamed in homage to Carl van Vreeswijk in Memoriam (April 20, 2022), Speakers have the occasion to talk about theoretical aspects of their work which cannot be discussed in a setting where the majority of the audience consists of experimentalists. The seminars, **held on Wednesdays at 11 am ET,** are 45-50 min long followed by a discussion. The talks are recorded with authorization of the speaker and are available to everybody on our YouTube channel.* ᐧ

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Daniel Messinger speaking on December 12 in Developing Minds global online lecture series
by Jochen Triesch 06 Dec '24

06 Dec '24

Dear colleagues, On December 12, the Developing Minds global online lecture series is proud to host Daniel Messinger, Department of Psychology, University of Miami, Florida, United States, USA, speaking on: "Does Interaction Drive Development? Lessons from infant emotion, autism, and preschool language“ Thursday, December 12, 2024 9:00 am EST (Eastern Standard Time, US) 14:00 UTC (Universal Coordinated Time) 15:00 CET (Central European Time) 23:00 JST (Japan Standard Time) The zoom link/credentials are: https://uni-frankfurt.zoom-x.de/j/66558045290?pwd=Ien7tEzqeNGOdqHi7zKg4EJuY… Meeting-ID: 665 5804 5290 Kenncode: 753667 Abstract: A dynamic systems perspective suggests that developmental achievements are composed of a progression of real-time interactions. But evidence supporting this surmise is not common. Dr. Messinger employs machine learning of audio, video, and ultrawideband signals in naturalistic contexts to highlight the role of individual and interactive dynamics in constituting developmental outcomes. He will discuss a series of salient examples linking the emergence of interactive competencies with developmental outcomes. These include the emergence of interactive smiling and attachment, as well as the emergence of autism and preschool language competencies. Dr. Messinger will conclude with a discussion of the strengths and limitations of current empirical research linked to dynamic systems and developmental cascades perspectives. Short Bio: Dr. Daniel Messinger is a professor and Director of the Child Division in the Department of Psychology at the University of Miami where he is the Director of the Social and Behavioral Sciences Program at the Institute for Data Science and Computing. He employs computational approaches to big behavioral data to understand the interactive origins of social, language, and emotional development. His research focuses on social and communicative development in typically developing children, children with hearing loss, children with autism spectrum disorder (ASD), and children whose communicative development is affected by prenatal drug exposure and poverty. The talk will be recorded and made available for later viewing. For more information on the talk series and recordings of previous events, please visit: https://sites.google.com/view/developing-minds-series/home Best regards, Jochen Triesch -- Prof. Dr. Jochen Triesch Johanna Quandt Chair for Theoretical Life Sciences Frankfurt Institute for Advanced Studies and Goethe University Frankfurt http://fias.uni-frankfurt.de/~triesch/ Tel: +49 (0)69 798-47531 Fax: +49 (0)69 798-47611

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Women in Memory Research 2025 - WiMR2025
by Vinita Samarasinghe 04 Dec '24

04 Dec '24

*Women in Memory Research 2025* The research unit “Constructing scenarios of the past” seeks to promote women in memory research. The program WiMR 2025 is made possible through a grant from the German Research Foundation (DFG) and collaboration with the Ruhr University Bochum. Come and learn what an academic career looks likeand discover its advantages. During your week at the Ruhr University Bochum (RUB)you will participate in GEM 2025 where you will hear about the latest research in generative episodic memory, be given the opportunityto present your research and meet with female scientists from the field. Before and after GEM you'll be introduced to Bochum, the RUB and the FOR 2812 labs <https://for2812.rub.de/projects/>. Our participating senior scientists include: Ali Boyle, London School of Economics; Iris Engelhard, Utrecht University; Xenia Kobeleva, Ruhr U. Bochum; Sabine Seehagen, Ruhr U. Bochum; Kristina Liefke, Ruhr U. Bochum. Sounds exciting? *Who can apply:* Womenmasters students in their final year of study and recently graduated masters students who are looking into an academic career in the area of memory research/neuroscience. Applicants must have excellent grades and be able to communicate in English. Selection of participants is competitive. We only have 12 spots! *How to apply:* Send your application including a one page letter of motivation, a current CV, masters transcripts and a letter of recommendation from one of your professors. Your application should be sent, as a single PDF document, to Vinita Samarasinghe @ for2812+gem(a)rub.de <mailto:for2812@rub.de> by February 15, 2025 with the subject line "WiMR - application". If you need child care or any other support please note this in your application. Applications will be evaluated and ranked after the deadline has passed and notifications will be sent out by 28.02.2025. If you accept, you must register for GEM 2025. *What to expect from us:* We will provide bed and breakfast (single occupancy), cover travel costs (restrictions apply) and provide some meals. The program is offered in English. *What we expect from you:* You are present for all of the program and that you present your current research in the form of a poster at GEM 2025. *Tentative program: * 02.06.2025 AM Welcome to Bochum PM GEM 2025 03.06.2025 GEM 2025 04.06.2025 AM GEM 2025 PM Fireside chat with senior memory researchers 05.06.2025 Lab visits 06.06.2025 Workshop *Questions? * Visit our website at https://for2812.rub.de/wimr2025 for more information. Please feel free to get in touch with Vinita Samarasinghe (for2812(a)rub.de <mailto:for2812@rub.de>) if you have any questions. -- Vinita Samarasinghe M.Sc., M.A. Science Manager Arbeitsgruppe Computational Neuroscience Institut für Neuroinformatik Ruhr-Universität Bochum, NB 3/73 Postfachnummer 110 Universitätstr. 150 D-44801 Bochum Tel: +49 (0)234 32 27996 Email:samarasinghe@ini.rub.de

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PhD Opportunity at the University of Bristol: Investigation of traumatic memory processing during sleep using through advance machine learning
by Eleonora Russo 03 Dec '24

03 Dec '24

The University of Bristol is pleased to offer a fully-funded PhD position to study the processing of traumatic memories during sleep using advanced machine learning techniques. The successful candidate will be supervised by an interdisciplinary team of experimental and computational neuroscientists, including Dr. Ross Purple, Dr. Sean Froudist-Walsh, and Dr. Eleonora Russo. This project will also involve collaboration with the Sant’Anna School of Advanced Studies in Pisa, Italy. Application deadline is 4pm Monday 6th January 2025. Find more information at: https://www.findaphd.com/phds/project/funded-phd-decoding-the-processing-of… For enquiries, please contact: Dr Ross Purple https://research-information.bris.ac.uk/en/persons/ross-j-purple Dr. Eleonora Russo https://www.santannapisa.it/en/eleonora-russo Dr Sean Froudist-Walsh https://research-information.bris.ac.uk/en/persons/sean-froudist-walsh --------------------------------------------------------------------------------------------------------------------- Eleonora Russo, Ph.D. PI of the Brain Dynamics Laboratory Assistant Professor at Sant’Anna School of Advanced Studies, The BioRobotics Institute, P.za Martiri della Liberta', 33 56127 Pisa, Italy

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Seizure detection challenge (2025)
by Jonathan Dan 03 Dec '24

03 Dec '24

Hello, EPFL is organizing a competition in collaboration with the International Conference on Artificial Intelligence in Epilepsy and Other Neurological Disorders. The competition aims to develop epileptic seizure detection algorithms for assisting in the analysis of scalp electroencephalography. It is open to anyone with skills in machine learning and artificial intelligence. This competition should help identify algorithms well suited for hospital adoption while simultaneously pushing for open and reproducible science. You will find a description of the competition on https://epilepsybenchmarks.com/challenge Hurry up! We are expecting algorithm submissions by 16 February 2025. Happy hacking Jonathan Dan Post-Doc ESL-EPFL

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Postdoc and PhD call | Spatiotemporal dynamics and computation in cortical networks
by Lyle Muller 02 Dec '24

02 Dec '24

Postdoctoral and graduate research positions are available at Western University<http://mullerlab.ca/> (London, ON) and the Fields Lab for Network Science<http://www.fields.utoronto.ca/activities/fields-lab-network-science> (Toronto, ON). These positions will be supervised by Lyle Muller and involve collaborations with advanced methods of brain imaging (Mark Schnitzer, Stanford), neuroengineering (Duygu Kuzum, UCSD), theoretical neuroscience (Todd Coleman, Stanford), and neurophysiology of visual perception (John Reynolds, Salk Institute for Biological Studies). In collaboration with this multi-disciplinary team, researchers will bring together data science, computational science, and applied mathematics to understand spatiotemporal dynamics and computation in the circuits of neocortex. The project may include intermittent travel between labs to present results and facilitate collaborative work. Recent publications from the lab include: * Davis Z*, Muller L*, Martinez-Trujillo J, Sejnowski TJ, Reynolds J (2020) Spontaneous traveling cortical waves gate perception in awake behaving primates. Nature 587: 432 – 436.<https://www.nature.com/articles/s41586-020-2802-y> * Benigno G, Budzinski RC, Davis Z, Reynolds J, Muller L (2023) Waves traveling over a map of visual space can ignite short-term predictions of sensory input. Nature Communications 14: 3409. <https://www.nature.com/articles/s41467-023-39076-2> * Liboni L*, Budzinski RC*, Busch AN*, Löwe S, Keller TA, Welling M, Muller L (2023) Image segmentation with traveling waves in an exactly solvable recurrent neural network. arXiv:2311.16943.<https://arxiv.org/abs/2311.16943> * Busch A*, Roussy M*, … Mináč J, Sachs AJ, Palaniyappan L, Muller L*, Martinez-Trujillo JC* (2024) Neuronal activation sequences in lateral prefrontal cortex encode visuospatial working memory during virtual navigation. Nature Communications 15: 4471.<https://www.nature.com/articles/s41467-024-48664-9> * Budzinski RC*, Busch A*, Mestern S, Martin E, Liboni LHB, Pasini FW, Mináč J, Coleman T, Inoue W, Muller L (2024) An exact mathematical description of computation with transient spatiotemporal dynamics in a complex-valued neural network. Communications Physics 7: 239.<https://www.nature.com/articles/s42005-024-01728-0> Prior experience with scientific computing, signal analysis, and applied mathematics is preferred. Western University offers an excellent research environment and support. Candidates can write to lmuller2(a)uwo.ca<mailto:lmuller2@uwo.ca> with a CV and short statement of interest. Both the lab and the University are deeply committed to fostering diversity and scientific outreach. Applications from underrepresented groups are strongly encouraged, and any interested applicants are welcomed to write the PI directly with questions about the research environment. -- Lyle Muller http://mullerlab.ca

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Permanent position in mathematical stochastic modeling of neuromodulation
by Axel Hutt 02 Dec '24

02 Dec '24

------------------------------------------------------------------------------------ Permanent position in mathematical stochastic modeling of neuromodulation in brain networks and application to mental disorders ------------------------------------------------------------------------------------ The new research team NECTARINE at INRIA in Strasbourg / France aims to create a synergy between clinicians and mathematical researchers to develop new healthcare technologies. The team works on stochastic microscopic network models to describe macroscopic experimental data, such as behavior and/or encephalographic. They collaborate closely with clinicians and choose their research focus along the clinical applications. Major scientific objectives are stochastic multi-scale simulations and mean-field descriptions of neural activity on the macroscopic scale. Moreover, merging experimental data and numerical models by machine learning techniques is an additional objective. The team's clinical research focuses on neuromodulation of patients suffering from deficits in attention and temporal prediction. The team offers the possibility to apply for a permanent position as Chargé de Recherche (CR) or Directeur de Recherche (DR) in the research field of mathematical neuroscience with a strong focus on stochastic dynamics linking brain network modelling with experimental data. The new colleague should have a strong expertise in mathematical modeling with a focus on stochastic nonlinear dynamics and/or network dynamics, as well as strong interest in clinical applications. Strong programming skills are mandatory. INRIA is a French National Institute for Research in Digital Science and Technology ( [ https://www.inria.fr/en | https://www.inria.fr/en ] ) with 9 research centres in France. The new team will be located in the centre of Strasbourg on the hospital campus as part of the Research Centre in Nancy. The application deadline will be January 15, 2025 , but it is strongly recommended to contact us well in advance. For more details or sending your application documents (motivation letter, CV including publication list), please contact Dr. Axel Hutt (email: axel.hutt(a)inria.fr ) . -- Axel Hutt Directeur de Recherche Equipe MIMESIS INRIA Nancy Grand Est Bâtiment IHU 1, Place de l'Hopital 67000 Strasbourg, France [ https://mimesis.inria.fr/members/axel-hutt/ | https://mimesis.inria.fr/members/axel-hutt/ ]

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Postdoctral position at the Department of Biomedical Data Science, School of Medicine, Fujita Health University (FHU), Aichi, Japan
by 浦久保秀俊 02 Dec '24

02 Dec '24

We invite applications for an enthusiastic postdoctoral researcher in the area of computational neuroscience or systems biology. A new collaborative project with Kyushu U (#) has been launched to elucidate biochemical signaling involved in the development of the olfactory system. We are working on a project to simulate how neural circuits in the brain acquire function through development. As an example, we are focusing on the process of mitral cell dendritic pruning that leads to the acquisition of odor selectivity (Fujimoto 2023, Dev Cell 58, 1221–1236). This process is governed by the coupling of biochemical signaling of small G proteins and neuronal electrical activity. In addition, the neural circuit simulation will be performed to elucidate the emergent process of odor information processing. The NEURON simulator or other platform simulators will be useful for this project. (#) Grant-in-Aid for Transformative Research Areas(A), Japan Society of the Promotion of Science (JSPS), Japan. https://plaza.umin.ac.jp/dynamic-brain/en/ 1. Job title Full-time Postdoctoral Researcher 2. Begin date January 1st 2025 or later (negotiable) 3. Appointment period Annually renewed based on evaluation. Up to March/2029. 4. Workplace Fujita Health University (FHU), Aichi, Japan https://www.fujita-hu.ac.jp/en/ 1-98 Dengakugakubo, Kutsukake-cho, Toyoake, Aichi 470-1192, Japan 5. Qualifications Applicants must: - have Ph.D. (or be near the completion of the degree). - have strong motivations and ambitions to participate in the research above. 6. Compensation Salary will be commensurate with qualifications and experience. Social insurance will be applied. Days off include public holidays, New Year's holidays (Dec. 29 - Jan 3), summer vacation, and sick leave. These and other provisions are in accordance with FHU regulations. 7. Required documents Please send the following five materials to the email address below: 1. Complete CV 2. List of publications 3. Reprints of 1 to 3 major publications 4. Document (one or two pages in A4 or letter size) describing: - Summary of your previous research and current interest. - Relevance to the project research and potential contributions. Describe your skills in neuronal and neural circuit simulations and their relevance to Fujimoto 2023 (Dev Cell 58, 1221-1236). - Technical skills (programming skills, etc). 5. One letter of recommendation, if available, from the current supervisor. 8. Selection Selection will be made based on application screening and interviews. 9. Others No smoking allowed on the premises of FHU. 10. Application and Contact Hidetoshi Urakubo, Ph.D. Email: hidetoshi.urakubo(a)fujita-hu.ac.jp Department of Biomedical Data Science, School of Medicine, Fujita Health University (FHU), 1-98 Dengakugakubo, Kutsukake-cho, Toyoake, Aichi 470-1192, Japan Phone: +81-562-93-9628 https://researchmap.jp/urakubo?lang=en https://www.fujita-hu.ac.jp/~datascience/

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