July 2017 - Comp-neuro - lists.cnsorg.org

Creating a list of important computational predictions
by Yiota Poirazi 04 Jan '21

04 Jan '21

Dear all, I believe you would agree that, the greatest recognition of our computational work comes with the experimental verification of our computational predictions. To highlight the most important outcomes of our theoretical work and facilitate a closer interaction with experimental labs so as to increase the chances of our predictions being experimentally tested, I would like to encourage you to nominate your favorite prediction at the following google form: https://docs.google.com/forms/d/e/1FAIpQLSeJZ2RrXJ0nZonIuyNzN0Cl gXDKDb7xTzoJOiqZTGxm9Kh7ow/viewform?c=0&w=1&usp=mail_form_link This effort started during the CNS 2017 meeting in Antwerp with the support of the OCNS Board. The resulting list will be posted on the CNS 2017 web site and disseminated in social media, as a reference for experimentalists. Thank you very much for supporting this important effort! Best wishes, Yiota Poirazi -- Panayiota Poirazi, Ph.D. Research Director Computational Biology Laboratory Institute of Molecular Biology and Biotechnology (IMBB) Foundation of Research and Technology-Hellas (FORTH) Vassilika Vouton, P.O.Box 1385, GR 70013, Heraklion, Crete GREECE Tel: +30 2810 391139 Fax: +30 2810 391101 Εmail: poirazi(a)imbb.forth.gr Lab site: www.dendrites.gr FENS-Kavli Network of Excellence <http://www.fens.org/Outreach/FENS-Kavli-Network-of-Excellence/> -- This message has been scanned for viruses and dangerous content by *E.F.A. Project* <http://www.efa-project.org>, and is believed to be clean. Click here to report this message as spam. <http://mailgate1.imbb.forth.gr/cgi-bin/learn-msg.cgi?id=4BCD7A00A1.A57D7&to…> -- Panayiota Poirazi, Ph.D. Research Director Computational Biology Laboratory Institute of Molecular Biology and Biotechnology (IMBB) Foundation of Research and Technology-Hellas (FORTH) Vassilika Vouton, P.O.Box 1385, GR 70013, Heraklion, Crete GREECE Tel: +30 2810 391139 Fax: +30 2810 391101 Εmail: poirazi(a)imbb.forth.gr Lab site: www.dendrites.gr FENS-Kavli Network of Excellence <http://www.fens.org/Outreach/FENS-Kavli-Network-of-Excellence/>

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CFP: FLAIRS 2017, Marco Island, FL,
by bisant＠umbc.edu 18 Oct '18

18 Oct '18

CALL FOR PAPERS FLAIRS 2017, Florida Artificial Intelligence Research Symposium Special Tracks on Data mining and Special Track on Cyber Security Marco Island, Florida http://www.flairs-30.info/ Paper submission deadline: November 21, 2016. Notifications: January 23, 2017. Camera ready version due: February 27, 2017. FLAIRS is an interdisciplinary artificial intelligence conference which especially encourages novel ideas and which features a double-blind review process. Data Mining Track This special track will be devoted to data mining with the aim of presenting new and important contributions in this area. Papers and contributions are encouraged for any work related to Data Mining. Topics of interest may include (but are in no way limited to): 1. Applications such as Intelligence analysis, medical and health applications, text, video, and multi-media mining, E-commerce and web data, financial data analysis, cyber security, remote sensing, earth sciences, bioinformatics, and astronomy. 2. Modeling algorithms such as hidden Markov models, decision trees, neural networks, statistical methods, or probabilistic methods; case studies in areas of application, or over different algorithms and approaches. 3. Feature extraction and selection. 4. Post-processing techniques such as visualization, summarization, or trending. 5. Preprocessing and data reduction. 6. Knowledge engineering or warehousing. Papers dealing with Cloud-based unstructured data or Cloud-based tool suites, such as Mahout or Apache Spark, are also encouraged. Cyber-Security Track Original high quality papers are sought for leading edge research and applications relating to the application of AI and Cyber Security. Topics of interest may include but are not limited to: · Machine Learning for Intrusion Detection Systems · NLP for text analysis in Cyber Security · Video and CCTV semantic analysis for terrorist or criminal action detection · AI & Biometrics, Internet of Things, and Cloud Computing security · AI & SCADA systems, Network Systems, and Embedded Systems security · Formal and theoretical approaches of intelligent security in WSNs · Legal and policy issues in intelligent security · Integrity, privacy, authentication and access control · Intelligent secure systems in multimedia databases · Social networks security · Intelligent incident response techniques in network and communication systems · Risk analysis and intelligent management · Virtual Private Networks intelligent security · Automated reasoning techniques of incidents and evidence analysis · Evidentiary aspects of digital forensics · Collaborative intelligent investigation · Intelligent systems in management, storage and reassembly · Steganography, watermarking, and forensic techniques in multimedia content processing · Lightweight security techniques · Intelligent Large-scale investigations and Big Data · Innovative non-repudiation techniques · Intelligent vulnerability analysis and assessment · Attacks tracking · Data hiding, tamper detection and recovery techniques · Security of e- healthcare systems and applications Note: We invite original papers (i.e. work not previously submitted, in submission, or to be submitted to another conference during the reviewing process). Submission Guidelines Interested authors should format their papers according to AAAI formatting guidelines. The papers should be original work (i.e., not submitted, in submission, or submitted to another conference while in review). Papers should not exceed 6 pages (or 4 pages for short paper, to be presented as a poster) and are due by November 21, 2016. For FLAIRS-30, the 2017 conference, the reviewing is a double blind process. Author names and affiliations should be Xd out on submitted papers to provide double-blind reviewing. Papers must be submitted as PDF through the EasyChair conference system, which can be accessed through the main conference web site (http://www.flairs-30.info/). Note: do not use a fake name for your EasyChair login - your EasyChair account information is hidden from reviewers. Authors should indicate which special track they are submitting to. The proceedings of FLAIRS will be published by the AAAI. Authors of accepted papers will be required to sign a form transferring copyright of their contribution to AAAI. FLAIRS requires that there be at least one full author registration per paper.

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PhD Studentship in Computational and Systems Neuroscience
by Christopher Buckley 19 Jan '18

19 Jan '18

PhD Studentship: Distributed neural processing of self-generated visual input in a vertebrate brain A PhD studentship in Computational and Systems Neuroscience is available in the groups of Dr Christopher L Buckley (Department of Informatics) and Prof. Leon Lagnado (School of Life Sciences) at the University of Sussex from September 2017. During movement, sensory input and motor output are bound in a closed-loop: motor actions shape sensory input and sensory inputs inform future motor commands. We will characterise the neural circuits involved in the interactions between the sensory and motor systems using light-sheet microscopy to image neural activity across the brain of live zebrafish in a virtual reality environment (Nature. 2013;493: 466–468). The project will involve computational modeling and “big-data” analysis as well as experiments. Appropriate backgrounds therefore include physical and computational science as well as neuroscience. Experience with programming and a quantitative approach are essential. More information about the project is available at https://tinyurl.com/kjtxoq9. Informal enquiries can be made to Chris Buckley<http://www.christopherlbuckley.com/> (c.l.buckley(a)sussex.ac.uk<mailto:c.l.buckley@sussex.ac.uk>) or Leon Lagnado<http://www.sussex.ac.uk/lifesci/lagnadolab/> (l.lagnado(a)sussex.ac.uk<mailto:l.lagnado@sussex.ac.uk>). Sussex Neuroscience<http://www.sussex.ac.uk/sussexneuroscience> is one of the foremost centers for Neuroscience research in the UK and the University of Sussex has a beautiful campus on the outskirts of the lively South Coast town of Brighton. Application: Please apply through the post-graduate application system of the University of Sussex (http://www.sussex.ac.uk/study/apply). Please include a brief statement of your scientific interests and skills/experience in the mandatory “research proposal”, including how you would imagine your role in the project (max 2 pages) and include a full CV. Indicate Dr Christopher L Buckley as your preferred advisor and clearly state the title of the studentship. When you apply, please send a copy of your application documents to c.l.buckley(a)sussex.ac.uk<mailto:c.l.buckley@sussex.ac.uk>. Funding Notes The studentship includes a three year stipend at a standard rate (currently £14,296 per annum) and, in addition, fees at the UK/EU rate. Since the studentship only covers fees at the UK/EU rate, overseas applicants are kindly requested to state in their application how they propose to cover the difference between UK/EU and overseas fees. Deadline Applications will be considered on a rolling basis but candidates applying before 15 July can be sure to be considered. Christopher L Buckley Lecturer in Neural Computation University of Sussex Department of Informatics Sussex Neuroscience Falmer Brighton, UK email: c.l.buckley(a)sussex.ac.uk<mailto:c.l.buckley@sussex.ac.uk> twitter: @drclbuckley

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postdoc in Barcelona to do single cell recordings in humans
by Quian Quiroga, Rodrigo (Prof.) 21 Aug '17

21 Aug '17

*** Apologies for multiple postings*** Dear all, Please see below details of a postdoc position at the Barcelona ßeta Brain Research Center to study memory mechanisms by performing single cell recordings in humans in collaboration with Hospital del Mar. Cheers, Rodrigo Postdoc Position Barcelona ßeta Brain Research Center (BBRC) The Barcelona ßeta Brain Research Center (BBRC) offers a fully funded postdoc position at the research group headed by Professor Rodrigo Quian Quiroga. The group is part of a new Research Program on Memory, complementary to ongoing research at BBRC dealing with the Prevention of Alzheimer Disease. The group is associated to the epilepsy group headed by Dr. Gerardo Conesa at Hospital del Mar, a health center close to BBRC. Research will involve the study single cell recordings in humans. These recordings are performed in epileptic patients for curative surgery. In particular, the project will investigate concept cells (a.k.a. Jennifer Aniston neurons) – that means, neurons in the hippocampus and surrounding areas that selectively fire to specific concepts, like different pictures and the written or spoken name of a particular person (e.g. Quian Quiroga et al, Nature 2005; Quian Quiroga Nature Reviews Neuroscience 2012), which are involved in declarative memory functions. The successful candidate will contribute to performing recordings with patients at the Hospital del Mar and the analysis of the data to investigate the role of these neurons in memory formation, consolidation, long-term coding and recall. Candidates should have excellent quantitative skills (data processing, and programming, preferably in Matlab) and ideally, a strong background in neuroscience and experience with neurophysiology recordings. They should be able to work both independently and as part of a research team within the BBRC. The position is initially offered for 2 years, with the possibility to extend it for another 2 years. Salary will be competitive, depending on experience. The closing date for the applications is Monday 25th August 2017. Start date will be in October 2017. For application details and further particulars see: https://fpmaragall.org/en/wp-content/uploads/sites/3/2014/07/Postdoc_Neural… Informal inquiries are welcome and should be submitted electronically to: rh(a)fpmaragall.org Rodrigo Quian Quiroga Centre for Systems Neuroscience University of Leicester www.le.ac.uk/csn

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PhD position in Neuroscience at the Bio-Imaging Lab, University of Antwerp, Belgium
by Georgios A. Keliris 31 Jul '17

31 Jul '17

PhD position in Neuroscience at the Bio-Imaging Lab, University of Antwerp, Belgium The Faculty of Pharmaceutical, Biomedical and Veterinary is seeking to fill a full-time (100%) vacancy (m/f) in the Department of Biomedical Sciences (Bio-Imaging Lab) under the supervision of Prof. Georgios A. Keliris PhD position investigating the role of neuromodulation in learning and memory The goal of the project is to understand the neural mechanisms modulating learning and memory in rats. A multimodal approach and combination of state-of-the-art methods (MRI-imaging, electrophysiology, optogenetics and pharmacogenetics) will be used to uncover both the global network as well as specific cellular mechanisms. This approach will also be employed in animal models of neurodegenerative diseases such as Alzheimer’s Disease. Job description · You prepare a doctoral thesis in the field of neuroscience / biomedical imaging. · You publish scientific articles related to the research project of the assignment. Profile and requirements · You hold a master degree in neuroscience, biomedical sciences, or related fields. · You can submit outstanding academic results. · Students in the final year of their degree can also apply. · Foreign candidates are encouraged to apply. · Your academic qualities comply with the requirements stipulated in the university’s policy <https://www.uantwerp.be/en/about-uantwerp/mission-vision/three-core-tasks/r…>. · You are quality-oriented, conscientious, creative and cooperative. · You are fluent in English and have strong communication skills, both in writing and oral presentations · You are a team player · Strong background in one or more of: imaging, computational neuroscience, mathematics, programming (e.g. Matlab/Python/C/…) will be considered as a bonus We offer · a doctoral position for a period of one year, with the possibility of renewal for a further three-year period after positive evaluation; · the start date is as soon as possible · a dynamic and stimulating work environment. How to apply? · Applications should be submitted to Georgios.Keliris(a)uantwerpen.be <mailto:Georgios.Keliris@uantwerpen.be> and should include a copy of your CV and a cover letter. · A pre-selection will be made from amongst the submitted applications. · More information about the application and the position can be obtained from Prof. Georgios A. Keliris

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Postdoctoral position: cortical microcircuit dynamics
by Okun, Michael (Dr.) 28 Jul '17

28 Jul '17

Applications are invited for a postdoctoral position to carry out research on cortical microcircuit dynamics. Research will involve analysis and modelling of cortical population recordings, focusing on changes occurring in the infraslow frequencies (0.01 - 1 Hz). The position is at the Centre for Systems Neuroscience, University of Leicester, UK. The project will involve advanced computational and experimental approaches - our experimental facilities include in vivo electrophysiology and 2-photon microscopy setups. Additional details on the PI and the Centre can be found at www2.le.ac.uk/departments/npb/people/mo178 and www.le.ac.uk/csn An ideal applicant would have a quantitative background and strong computational, programming and statistical skills (e.g. a PhD in computational/systems neuroscience, applied mathematics, computer science or related subjects). Previous experience in systems neuroscience research is a significant advantage. Start date is flexible and candidates will be considered on a rolling basis, however anyone applying before 14th of September is guaranteed to be considered. Funding for this position is available for (at least) 3 years. Leicester has a large student community thanks to its two universities, and is within easy reach (~1 hour by train) of London, Birmingham and Sheffield. Interested applicants are most welcome to contact Michael Okun (m.okun(a)le.ac.uk).

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PhD Scholarship on Model-based Cognitive Neuroscience
by Jelmer Borst 27 Jul '17

27 Jul '17

PhD Scholarship on Model-based Cognitive Neuroscience The Institute of Artificial Intelligence of the University of Groningen offers a four-year scholarship for a PhD position on model-based cognitive neuroscience. Model-based cognitive neuroscience is the area of research that bridges the disciplines of computational cognitive modeling and cognitive neuroscience. Cognitive models – be it symbolic process models, mathematical models, or neural network models – are notoriously hard to evaluate based on behavioral measures alone. For that reason, researchers have turned to neuroscience (M/EEG, fMRI) as an additional source of information. At the same time, neuroimaging data is often so complex that it is difficult to fully account for with traditional analysis methods. As a solution, cognitive and mathematical models have been used within the analysis stream to interpret neural measures directly. This dual approach, using neuroscience to inform models and models to inform neuroimaging analyses, is very powerful, and has led to the emerging field of model-based cognitive neuroscience (see a recent special issue of the Journal of Mathematical Psychology for an introduction: Palmeri, Love, & Turner, 2017; Turner, Forstmann, Love, Palmeri, & van Maanen, 2017). The PhD position is available in the cognitive modeling group, under supervision of Jelmer Borst. The goal of our group is to better understand cognitive processes in the human mind. To achieve this, we combine computational modeling with fMRI, EEG, and MEG data, and also apply machine learning techniques to analyze neural data. Top candidates will be invited to write and develop their own research project within the general scope of this research line. The selection procedure for the scholarship is as follows: 1. Candidates apply by submitting a cover letter and CV (see below for details). 2. Based on the cover letters, several candidates will be invited to write a short research proposal within the topic of model-based neuroscience. 3. These candidates will be asked to present this proposal as part of the job interview. 4. After the selection, the candidate’s proposal will be further developed in collaboration with the PhD advisors: Jelmer Borst, Niels Taatgen, and Hedderik van Rijn. Qualifications Successful candidates will have completed a Master’s degree (or equivalent) in Cognitive Neuroscience, Artificial Intelligence, or another field of science relevant for the position. The ideal candidate has experience with M/EEG or fMRI and cognitive modeling, and has strong programming skills. Conditions The PhD student will be enrolled in the PhD Scholarship Programme and receive a scholarship of € 2027 per month (gross) from the University of Groningen for a period of four years. Date The preferred start date is November 1, 2017, but this can be postponed to February 1, 2018. Application Please see the attachment for details on the application procedure. The application deadline is August 30. For more information, contact Jelmer Borst (j.p.borst(a)rug.nl <mailto:j.p.borst@rug.nl>). http://www.rug.nl/education/phd-programmes/phd-scholarship-programme/phd-sc… <http://www.rug.nl/education/phd-programmes/phd-scholarship-programme/phd-sc…> -- Jelmer Borst Assistant Professor University of Groningen Dept. of Artificial Intelligence E: j.p.borst(a)rug.nl <mailto:j.p.borst@rug.nl> W: http://www.jelmerborst.nl/ <http://www.jelmerborst.nl/>

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Neuroinformatics 2017 in Kuala Lumpur, Malaysia, on August 20-21!
by INCF Congress 27 Jul '17

27 Jul '17

Neuroinformatics 2017 will be held in Kuala Lumpur, Malaysia, on August 20-21! We have an exiting program lined up, you can see the full program and speakers here: http://neuroinformatics2017.org/program/ The annual INCF Congress provides a meeting place for researchers in all fields related to neuroinformatics. Join us for keynotes from top neuroscientists, community sessions and poster- and demo sessions. This meeting is especially useful for anyone who is developing neuroscience tools and methods, working on better ways to handle neuroscience data, and looking for cross-disciplinary collaborations. More information: http://neuroinformatics2017.org/ Please spread this information to anyone you feel might be interested in attending. We look forward to seeing you in Kuala Lumpur! Best wishes, the INCF Secretariat *The International Neuroinformatics Coordinating Facility (INCF) is an international non-profit organization devoted to advancing the field of neuroinformatics and global collaborative brain research. Learn more about INCF at www.incf.org <http://www.incf.org>*

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Human Brain Project: calls are open to join the project in the next project phase
by "Lührs, Anna" 27 Jul '17

27 Jul '17

Dear colleagues, As most of you know, the Human Brain Project (HBP) is a Horizon2020 FET Flagship project with a duration of 10 years. One of the main objectives is to build and operate a European Scientific Research Infrastructure for brain research, cognitive neuroscience and other brain-inspired sciences. The HBP recently opened four Calls for Expression of Interest (CEoI), through which new partners can join the HBP Consortium in the next project phase, April 2018 - March 2020. One of the Calls is about "Co-designing the HBP digital infrastructure for advancing the understanding of multilevel brain organisation”. The available budget of EUR 1,839,424.00 will be split between two selected proposals. The submission deadline for this and the others calls is 30 September 2017, 17:00 CEST. More information about the call mentioned above: http://opencalls.humanbrainproject.eu/forms/16/overview <http://opencalls.humanbrainproject.eu/forms/16/overview> The overview of all open calls is published here: https://www.humanbrainproject.eu/en/collaborate/open-calls/ <https://www.humanbrainproject.eu/en/collaborate/open-calls/> Questions regarding the CEoI about co-designing the HBP infrastructure can be sent to: codesigning-hbp(a)opencalls.humanbrainproject.eu <mailto:codesigning-hbp@opencalls.humanbrainproject.eu> Best regards, Anna Lührs Simulation Lab Neuroscience Division HPC in Neuroscience Phone: +49 2461 61 8931 Jülich Supercomputing Centre E-mail: a.luehrs(a)fz-juelich.de Institute for Advanced Simulation http://www.fz-juelich.de/ias/jsc Forschungszentrum Jülich GmbH ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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One PhD and one PostDoc Position in Theoretical Neuroscience at the Georg-August University of Göttingen available
by Tetzlaff, Christian 26 Jul '17

26 Jul '17

The research groups of Prof. Florentin Wörgötter and Dr. Christian Tetzlaff offer one fully-funded PhD and one fully-funded PostDoc position for 4 years. Both groups are based in the Faculty of Physics of the University of Göttingen and work interdisciplinary on the field of self-organizing neural networks with focus on learning, plasticity, and memory. The research goals of both positions are to develop and analyze new theoretical models of learning-related molecular dynamics in dendritic spines. These projects will be in direct cooperation with experimental groups from the Göttingen Campus (e.g., together with the labs of Prof. Silvio Rizzoli and Prof. Stefan Hell) and they are part of a new established collaborative research center (SFB 1286 - "Quantitative Synaptology") at the University of Göttingen, Medical Center Göttingen, Max Planck Institute for Dynamics and Self-Organization, and Max Planck Institute for Biophysical Chemistry. The PhD student will have the opportunity to become member of the Göttingen Graduate School for Neurosciences, Biophysics, and Molecular Biosciences. Ideal candidates have experience and interest for mathematical and computational methods as well as for fundamental cell biology. The closing date is 30th of September 2017. Start date is as soon as possible. Applications should be send electronically (preferably one pdf-document) to: tetzlaff(a)phys.uni-goettingen.de<mailto:tetzlaff@phys.uni-goettingen.de> and worgott(a)gwdg.de<mailto:worgott@gwdg.de>

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