May 2022 - Comp-neuro - lists.cnsorg.org

New publication from the INCF Infrastructure Committee
by INCF 16 May '22

16 May '22

The INCF Infrastructure Committee’s “Recommendations for repositories and science gateways from a neuroscience perspective” <https://www.nature.com/articles/s41597-022-01334-1> has been published today, May 16, as a Comment in Scientific Data <https://www.nature.com/sdata/>. The project, initiated by the INCF Infrastructure Committee, aimed to develop an inclusive set of criteria that could apply to a wide and diverse range of digital services, including repositories, science gateways, data, and software. “We set out to develop criteria that were specific to neuroscience, but we realized during the process that our end result would be applicable to other data-heavy disciplines as well”, says Malin Sandström, coordinator for the Infrastructure Committee. “When you look at the problem closely, it turns out that many of the criteria have to do with best practices for how a service is run and governed, rather than with which types of data and other content it contains”. The work began in October 2020. A draft version <https://www.incf.org/criteria-checklist> was presented to the community at the INCF Assembly in April 2021, in a workshop <https://f1000research.com/documents/10-1026> with representatives from organizations engaged in similar projects, including FAIRSharing, FORCE11, and the Coalition of Open Access Repositories (COAR). A public first version of the criteria checklist was made available on the INCF portal <https://www.incf.org/criteria-checklist> in late 2021. With these criteria, INCF wants to help neuroscience researchers and students choose good services for their specific use cases and help service providers make good and future-proof decisions for setup and operations. Former Chair Wojtek Goscinski, now Chief Executive Officer at the Australian National Imaging Facility, explains: “Data repositories and scientific gateways are critical, but often underappreciated, components in the scientific workflow. It’s important that researchers can navigate the digital landscape to find the services that they need and to understand which services are fit-for-purpose. Likewise, repositories and gateways have increasing obligations to their users”. The recommendations published in the Comment are intended to guide users through the reasoning and considerations that went into the criteria development process. Read more: Workshop report <https://f1000research.com/documents/10-1026> Public first version criteria <https://www.incf.org/criteria-checklist> Blog post <https://incf.org/blog/incf-infrastructure-committee-recommendations-publish…>

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Postdoc positions in modeling/analysis for understanding sleep
by Geoffrey Goodhill 15 May '22

15 May '22

POSTDOC POSITIONS IN MODELING/ANALYSIS FOR UNDERSTANDING SLEEP OVERVIEW. A new NIH-funded collaboration between David Prober (Caltech), Thai Truong (USC) and Geoff Goodhill (Washington University in St Louis) aims to gain new insight into the neural circuits underlying sleep, through a combination of whole-brain neural recordings in zebrafish and theoretical/computational modeling. The Goodhill lab is now looking for 2 postdocs for the modeling and computational analysis components. PROJECT DETAILS. Using novel 2-photon imaging technologies Prober and Truong will record from the entire larval zebrafish brain at single-neuron resolution continuously for long periods of time, examining neural circuit activity during normal day-night cycles and in response to genetic and pharmacological perturbations. The Goodhill lab will analyze the resulting huge datasets using a variety of sophisticated computational approaches, and use these results to build new theoretical models that reveal how neural circuits interact to govern sleep. Theoretical and experimental work will be intimitely linked. APPLICANT PROFILE. Applicants for the positions in the Goodhill lab should have a strong background in mathematics/theory/computation applied to biological problems. Experience in modeling sleep processes is desirable but not required. LAB ENVIRONMENT. The Goodhill lab is an interdisciplinary environment of students and postdocs from a diverse array of backgrounds including neuroscience, mathematics, physics and engineering, working together on understanding neural circuit computation, particularly relating to neural development. The lab both performs its own behavioral and neural imaging experiments with larval zebrafish, and collaborates on the analysis of data generated elsewhere. UNIVERSITY ENVIRONMENT. Washington University in St Louis is ranked in the top 10 institutions globally for Neuroscience and Behavior, and offers an outstanding intellectual environment for research in neuroscience. In 2023 the Goodhill lab will move along with over 100 other labs into Washington University's new start-of-the-art 600,000 sq ft Neuroscience Research Building (https://neuroscience.wustl.edu/research/neuroscience-building). For more information about St Louis see https://explorestlouis.com. To apply please send a detailed CV and cover letter explaining your interest in the positions to g.goodhill(a)wustl.edu. Review of applications will continue until the positions are filled. Professor Geoffrey J Goodhill Departments of Developmental Biology, Neuroscience, Biomedical Engineering, and Electrical and Systems Engineering Washington University in St Louis St Louis, MO 63110 https://neuroscience.wustl.edu/people/geoffrey-goodhill-phd Email: g.goodhill(a)wustl.edu

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Postdoc / Junior Scientist in Multimodal Neuroimaging Machine Learning, Prague, Czech Republic
by Magda Pokorna 12 May '22

12 May '22

Postdoctoral / Junior Scientistposition in Multimodal Neuroimaging Machine Learning is available in Prague, Czech Republic: A postdoc or junior scientistposition is available to join the _Complex Networks and Brain Dynamics group <http://cobra.cs.cas.cz/>_for the project: /“Predicting functional outcome in schizophrenia from multimodal neuroimaging and clinical data“/funded by the Czech Health Research Council.The project involves the development of tools to predict the functional outcome of schizophrenia from multimodal neuroimaging, clinical and cognitive measurements taken early after disease onset. To overcome limitations due to high dimensionality of data, we combine robust machine-learning tools, data-driven feature selection and theory-based brain network priors.The project is carried out in collaboration with the National Institute of Mental Health, using its unique large rich imaging, cognitive and biochemical data of early stage schizophrenia patients. **Applications will be reviewed on a rolling basis with a first cut-off point on June 30, 2022.** For more information and application see https://www.cs.cas.cz/job-offer/postdoctoral-junior-scientist-position-Hlin… Do not hesitate to contact the principal investigator for informal inquiries concerning the position: Ing. Mgr. Jaroslav Hlinka, Ph.D., hlinka(a)cs.cas.cz, Web: http://cs.cas.cz/hlinka. Institute of Computer Science Czech Academy of Sciences Pod Vodarenskou vezi 2 Prague 8, 182 07, Czech Republic https://www.cs.cas.cz/

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INCF Assembly 2022: Abstract deadline extended!
by INCF 11 May '22

11 May '22

*The deadline to submit your abstracts to INCF Neuroinformatics Assembly 2022 <https://neuroinformatics.incf.org/> has been extended to May 23!* This interactive event will take place virtually from September 12-16 on the Gather platform, with poster sessions in Zohuddle. We’ve chosen these platforms specifically to make your experience as close to an in-person experience as possible. *Why is Assembly’s format different from other virtual conferences?* The Gather platform enables you to “walk” around the virtual space and when you get close to other participants they will pop up on live video. This works the same for posters and exhibitor booths and gives you a much more interactive experience than your ordinary virtual conference! The Assembly offers many training opportunities for participants of all career stages - this year we offer a 2 PhD-credit course on “Neuroscience data integration through use of digital brain atlases”. See all training sessions here <https://neuroinformatics.incf.org/2022/educational-courses>. *What is Zohuddle?* It’s an app to simplify virtual networking, specifically the poster session of Assembly. It works by letting you rank the abstracts that interest you the most, then creating a schedule of “huddles” with an integrated video chat for you to meet your matches! Important dates: - Registration opens: April 8 - Abstract submission opens: April 8 - Abstract submission closes: May 23 - Assembly: September 12-16 Submit your abstract & register for Assembly 2022 today! <https://neuroinformatics.incf.org/> *Share with your friends, colleagues, and networks!* Please forward the above email to your colleagues, students, and other networks to make this the best Assembly yet! Is social media more your style? Here are some posts just for you! Post 1: 📢Deadline extended!📢 You now have until May 23 to submit your abstracts for INCF Neuroinformatics Assembly 2022! Learn more & register here: bit.ly/Assembly2022reg Post 2: How is INCF Neuroinformatics Assembly 2022 more interactive than other virtual conferences? - “Walk” around the space - get close to other participants to interact via video! - Earn 2 PhD credits on one of our digital brain atlasing courses! Learn more: bit.ly/NeuroinformaticsAssembly2021 *We hope to see you at INCF Neuroinformatics Assembly 2022!*

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Junior Professor position in Computational Neurosciences - University of Lyon, France
by Nicolas Fourcaud-Trocmé 11 May '22

11 May '22

Dear all, Sorry for the short delay (application deadline is may 23th, 2022), but there is a Junior Professor position in Computational Neurosciences opened at the University of Lyon 1 (France). The position is targeted to Junior Professor level (level of experience 3-10 years after PhD). All details (research and teaching expectations, starting package, application guidelines) are given in the link below (initially in french then in english): https://www.galaxie.enseignementsup-recherche.gouv.fr/ensup/ListesPostesPub… Inquiries and further information can be sent directly to Dr Jérémie Mattout <jeremie.mattout(a)inserm.fr> and Pr Anne Didier <anne.didier(a)univ-lyon1.fr> Cordially, Nicolas Fourcaud-Trocmé -- Centre de Recherche en Neurosciences de Lyon Inserm U1028 - CNRS UMR5292 - UCBL Centre Hospitalier Le Vinatier - Bātiment 462 - Neurocampus 95 boulevard Pinel 69675 Bron Cedex Phone: (+33) 4 81 10 65 51 Fax: (+33) xxx e-mail: Nicolas.Fourcaud-Trocme(a)cnrs.fr

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Extended deadline: KogWis2022 | 15th Biannual Conference of the German Cognitive Science Society
by Constantin Rothkopf 10 May '22

10 May '22

Deadline extended to May 16th, 2022. Event: The 15th Biannual Conference of the German Cognitive Science Society, KogWis2022 Theme: Understanding Minds Date: 5.-7. September 2022 Location: Freiburg im Breisgau, Germany Host: Albert-Ludwigs University Freiburg Web: https://www.kogwis2022.uni-freiburg.de/ +++ The Call for Papers is now open (deadline: May 9th, 2022) : https://www.kogwis2022.uni-freiburg.de/picturesandstuff/call-for-papers-kog… +++ The Call for Tutorials is now open (deadline: May 9th, 2022): https://www.kogwis2022.uni-freiburg.de/picturesandstuff/call-for-tutorials-… Abstract: The 15. biannual Conference of the German Cognitive Science Society (KogWis2022) will take place from 5.-7. September 2022 in Freiburg i.Br., Germany, organized by the Center for Cognitive Science. The theme “Understanding Minds” reflects two perspectives: The conference provides a forum for all topics in the study of how minds – both human and artificial – operate. The theme also puts a specific spotlight on how cognitive systems make sense of the world, in particular in language comprehension and communication. Confirmed keynote speakers are: Dedre Gentner, Northwestern University, Illinois (USA) Seana Coulson, University of California, San Diego (USA) Marcel Brass, Humboldt-University, Berlin (D) Matthew Crocker, Saarland University, Saarbrücken (D) Further information is available on the conference website: www.kogwis2022.uni-freiburg.de. For any inquiries please use the conference e-mail-address: kogwis2022(a)cognition.uni-freiburg.de. With kind regards - The Organising Committee Evelyn Ferstl, Lars Konieczny, Rul von Stülpnagel, Judith Beck, Lisa Zacharski

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Junior Chair in Computational Neurosciences at Aix-Marseille Université, France
by PERRINET Laurent 10 May '22

10 May '22

Dear colleagues, Aix-Marseille Université (AMU) is opening a Junior Chair in Computational Neuroscience, a new tenured-track path at French Universities. The position is open at Junior Professor level (level of experience 3-10 years after PhD) and is supported with a start-up package of 470K€, including the salary for the Junior Professor. After 3-5 years, depending upon the scientific achievements, the Chair should lead to a permanent Faculty position at the Professor level (PR2). Quick facts: - Starting date: Sept-Dec 2022 (not flexible) - teaching is about 60h/year (negotiable) in Computational neurosciences - deadline of application June 8th - Inquiries and further information can be sent directly to both Dr Guillaume Masson (Director INT: guillaume.masson(a)univ-amu.fr<mailto:guillaume.masson@univ-amu.fr>) and Dr Viktor Jirsa (Director INS: viktor.jirsa(a)univ-amu.fr<mailto:viktor.jirsa@univ-amu.fr> ) Flyer : https://amubox.univ-amu.fr/s/6RPZfSs2B98DgdB/download/CPJ_call_AMU_INT_INS_… Full info (in French, then in English) at https://www.galaxie.enseignementsup-recherche.gouv.fr/ensup/ListesPostesPub… Please circulate! Cheers, Laurent -- Laurent Perrinet - INT (UMR 7289) AMU/CNRS https://laurentperrinet.github.io/

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NEST Conference 2022 - Extension of abstract submission deadline
by Hans Ekkehard Plesser 10 May '22

10 May '22

Dear all, The abstract submission deadline for the (virtual) NEST Conference 2022 has been extended to Wednesday, 25 May. We are looking forward to your contributions! The NEST Conference provides an opportunity for the NEST Community to meet, exchange success stories, swap advice, learn about current developments in and around NEST spiking network simulation and its application. This year's conference will again take place as a virtual conference on Thursday/Friday 23/24 June 2022. We are inviting contributions to the conference, including talks, "posters" and workshops on specific topics. Important dates 25 May 2022 — Deadline for submission of contributions 03 June 2022 — Notification of acceptance 17 June 2022 — Registration deadline 23 June 2022 — NEST Conference 2022 starts For more information on how to submit your contribution, register and participate, please visit the conference website https://nest-simulator.org/conference We are looking forward to seeing you all in June! Hans Ekkehard Plesser and the conference organizing committee -- Prof. Dr. Hans Ekkehard Plesser Head, Department of Data Science Faculty of Science and Technology Norwegian University of Life Sciences PO Box 5003, 1432 Aas, Norway Phone +47 6723 1560 Email hans.ekkehard.plesser(a)nmbu.no<mailto:hans.ekkehard.plesser@nmbu.no> Home http://arken.nmbu.no/~plesser

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Susan Goldin-Meadow speaking on May 18 in Developing Minds global online lecture series
by Jochen Triesch 10 May '22

10 May '22

Dear colleagues, On May 18, the Developing Minds global online lecture series will feature Susan Goldin-Meadow, Dept. of Psychology, U. of Chicago, USA: "The Mind Hidden in Our Hands“ https://sites.google.com/view/developing-minds-series/home The live event will take place via zoom at: 08:00 CDT (Central Daylight Time) 13:00 UTC (Universal Coordinated Time) 15:00 CEST (Central European Summer Time) 22:00 JST (Japan Standard Time) To participate please register here: https://sites.google.com/view/developing-minds-series/home Abstract Gesture is versatile in form and function. Under certain circumstances, gesture can substitute for speech, and when it does, it embodies the properties of language that children themselves bring to language learning, and underscores the resilience of language itself. Under other circumstances, gesture can form a fully integrated system with speech. When it does, it both predicts and promotes learning, and underscores the resilience of gesture in thinking. Together, these lines of research show how much of our minds is hidden in our hands. Bio Susan Goldin-Meadow is the Beardsley Ruml Distinguished Service Professor in the Departments of Psychology and Comparative Human Development at the University of Chicago. Her research focuses on the most basic building blocks of language and thought as they are developed in early childhood. Specifically, she is interested in uncovering linguistic components that are so basic they will arise in a child’s communication system even if the child has limited access to outside linguistic input. Professor Goldin-Meadow’s research has also generated more broadly applicable insights into how the spontaneous gestures that learners produce can reveal their readiness to learn language, math, and scientific concepts. Professor Goldin-Meadow is the founding Editor of Language Learning and Development, and has been president of the International Society for Gesture Studies, president of the Cognitive Development Society, chair of the Cognitive Science Society, and president of the Association for Psychological Society. She is the recipient of a Guggenheim Fellowship, received the William James award for lifetime achievement in basic research from APS, was elected to the American Academy for Arts and Science in 2005, and the National Academy of Sciences in 2020. Web: https://psychology.uchicago.edu/directory/susan-goldin-meadow The talk will also be recored and the recording made available via the web page: https://sites.google.com/view/developing-minds-series/home Stay healthy, Jochen Triesch -- Prof. Dr. Jochen Triesch Johanna Quandt Chair for Theoretical Life Sciences Frankfurt Institute for Advanced Studies and Goethe University Frankfurt http://fias.uni-frankfurt.de/~triesch/ Tel: +49 (0)69 798-47531 Fax: +49 (0)69 798-47611

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Scientific programmer position (ML/comp neuro), Kietzmann Lab
by Tim Kietzmann 10 May '22

10 May '22

Dear all, My team is looking for a scientific programmer (part-time, but permanent employment as a state employee, University of Osnabrück, Germany) to support our work in the domain of computational neuroscience/ML, which largely focuses on deep learning. The role comes with lots of flexibility in terms of content and working hours. - Details about the position are provided here: https://www.uni-osnabrueck.de/universitaet/stellenangebote/stellenangebote-… - You can find out more about our work here: https://www.kietzmannlab.org/ Feel free to contact me with any open questions. Best wishes Tim __________________________________ Prof. Dr. rer. nat. Tim C Kietzmann Professor for Machine Learning Institute of Cognitive Science University of Osnabrück Osnabrück, Germany Web: https://www.kietzmannlab.org Email: tim.kietzmann(a)uni-osnabrueck.de Twitter: @TimKietzmann

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