March 2020 - Comp-neuro - lists.cnsorg.org

Up to 6 PhD fellowships in Cognitive Neuroscience at SISSA, Trieste, Italy, to start Oct, 2020
by Alessandro Treves 12 Oct '22

12 Oct '22

SISSA is an elite postgraduate research institution located in Trieste, Italy, and focused on Maths, Physics and Neuroscience. It operates in English: many among its students and faculty are not Italian. The Cognitive Neuroscience Department hosts 6 research labs that study the neuronal bases of time and magnitude processing, visual perception, motivation and intelligence, language and reading, tactile perception and learning, and neural computation. The Department is very inter–disciplinary; our approaches include behavioural, psychophysics, and neurophysiological experiments with humans and animals, as well as computational and mathematical models. Students with diverse backgrounds (physics, math, medicine, psychology, biology) are most welcome to apply. The Department has an exceptional track record with highly competitive funds (recent funding includes 4 ERC and 3 Human Frontiers grants) and publication in top journals (Nature, Science, PNAS, Current Biology). Recent placements after PhD include Harvard, MIT, Columbia and Princeton in the US; the NTNU, Manchester and Radboud in Europe; and Sydney University, Australia. Our alumni have been awarded 4 ERC grants, the 2015 Kandel Young Neuroscientist Prize and the 2017 ICTP Prize. More information about the Department is available at our website https://phdcns.sissa.it. The selection procedure is now open; to learn how to apply, please visit https://phdcns.sissa.it/admission-procedure. Please contact the PhD Coordinator (davide.crepaldi(a)sissa.it) and/or your prospective supervisor for more information and informal enquiries. -- Alessandro Treves SISSA, Cognitive Neuroscience, http://people.sissa.it/~ale/limbo.html if in, rm 241, via Bonomea 265, 34136 Trieste, Italy: +39-040-3787623

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Postdoc in neural data analysis
by Mark Humphries 26 Jun '22

26 Jun '22

A 3 year postdoc post is available in the lab of Prof Mark Humphries, at the University of Nottingham (UK) In this project, our aim is to test the overarching hypothesis that movement transitions are encoded by the same neural population reconfiguring its joint activity, for both rhythmic and discrete movements. We will tackle this question using newly-available population recordings during rhythmic movement transitions in Aplysia and discrete arm movement transitions in monkeys, The Humphries’ group researches fundamental insights into how the joint activity of neurons encodes information about and actions in the world. For more see: https://www.humphries-lab.org Queries: mark.humphries(a)nottingham.ac.uk Deadline: 5th September Full details, and to apply: https://jobs.nottingham.ac.uk/Vacancy.aspx?id=27005&forced=2 [http://jobs.nottingham.ac.uk/org/images/socialmedia.png]<https://jobs.nottingham.ac.uk/Vacancy.aspx?id=27005&forced=2> Job Vacancy at the University of Nottingham: Research Associate/Fellow (Fixed term)<https://jobs.nottingham.ac.uk/Vacancy.aspx?id=27005&forced=2> Applications are invited for a postdoctoral research fellow to join the Humphries’ group on the MRC-funded project “Uncovering the neural basis of movement transitions”. The Humphries’ group researches fundamental... jobs.nottingham.ac.uk Professor Mark Humphries | MRC Senior non-Clinical Fellow | Chair in Computational Neuroscience Lab: humphries-lab.org<https://www.humphries-lab.org/> Twitter: @markdhumphries Public blog: https://medium.com/the-spike This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please contact the sender and delete the email and attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. Email communications with the University of Nottingham may be monitored where permitted by law.

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Postdoc at the University of Leicester to work on human single cell recordings
by Quian Quiroga, Rodrigo (Prof.) 23 Nov '21

23 Nov '21

The Centre for Systems Neuroscience at the University of Leicester, UK, offers a 3-years postdoc position to study single cell recordings in humans – performed in epileptic patients for curative surgery. The project will investigate concept cells (a.k.a. Jennifer Aniston neurons) – that means, neurons in the hippocampus and surrounding areas that selectively fire to specific concepts, like different pictures and the written or spoken name of a particular person (e.g. Quian Quiroga et al, Nature 2005; Quian Quiroga Nature Reviews Neuroscience 2012), which are involved in declarative memory functions. For more details see: www.le.ac.uk/csn The successful candidate will contribute to performing recordings with patients in collaborating hospitals and the analysis of the data to investigate the role of these neurons in memory. He/She should have very good quantitative skills (data processing, and programing e.g. in Matlab) and a strong background or interest in neuroscience. He/She should be able to work both independently and as part of a research team within the Centre for System Neuroscience at Leicester and with our external collaborators. Informal enquiries are welcome and should be made to Paula Warrington, Research Centre Manager, csn(a)le.ac.uk or 0116 252 3249. To apply, please use this link: https://jobs.le.ac.uk/vacancies/1393/research-associate.html The applications should include a curriculum vitae and a brief description of their scientific interests The closing date for the applications is 21st October 2019. Cheers, Rodrigo Rodrigo Quian Quiroga Centre for Systems Neuroscience University of Leicester www.le.ac.uk/csn

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Postdoc (3 yrs) in dynamical reconfigurations of neural populations during movement
by Mark Humphries 09 Mar '21

09 Mar '21

A 3 year postdoc post is available in the lab of Prof Mark Humphries, at the University of Nottingham (UK) In this project, our aim is to test the overarching hypothesis that movement transitions are encoded by the same neural population reconfiguring its joint activity, for both rhythmic and discrete movements. We will tackle this question by developing new computational algorithms for dynamic systems, and applying them to newly-available population recordings during rhythmic movement transitions in Aplysia and discrete arm movement transitions in monkeys, The Humphries’ group researches fundamental insights into how the joint activity of neurons encodes information about and actions in the world. For more see: https://www.humphries-lab.org Queries: mark.humphries(a)nottingham.ac.uk Deadline: 10th January 2020 Full details, and to apply: https://www.nottingham.ac.uk/jobs/currentvacancies/ref/SCI182819X1 Professor Mark Humphries | MRC Senior non-Clinical Fellow | Chair in Computational Neuroscience Lab: humphries-lab.org<https://www.humphries-lab.org/> Twitter: @markdhumphries Public blog: https://medium.com/the-spike This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please contact the sender and delete the email and attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. Email communications with the University of Nottingham may be monitored where permitted by law.

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Funded PhD and Data scientist positions
by Abhishek Banerjee 14 Jan '21

14 Jan '21

Dear colleagues, Two funded *Ph.D. positions* are available in the newly established Adaptive Decision-making lab as a part of Neuroscience, Neurodisability and Neurological Disorders research theme, Biosciences Institute, Newcastle University, UK. The research carried out as part of th Ph.D fellowship will investigate the role of behaviourally relevant neural circuits in decision-making and its dysfunctions in neurological disorders using experimental and theoretical approaches (PNAS 2016; BRAIN 2019; bioRxiv 2020). Exciting local and international collaborations will ensure a high standard of training and mentorship. The position is funded (UK/EU rate) for up to 3.5 years and the application deadline is *6th January 2020*. Application details can be found here or by email provided below: https://www.findaphd.com/phds/project/mrc-dimen-doctoral-training-partnersh… . Additionally, the Banerjee Lab is also hiring a *Data Scientist* to be involved in projects that focus on understanding cortical computation during behaviour by combining large-scale recordings and imaging of neuronal populations. This person will be involved in analysing experimental data, developing software tools, and helping with data infrastructure. The application deadline is *31st January 2020*. Qualifications for the Data scientist position: - M.Sc. degree (or exceptional B.Sc.) in Physics, Computer Science, Mathematics, Engineering, or related technical field. - Programming experience in MATLAB is required, and additional experience in Python and LABView is preferred. - Background in computational neuroscience, image analysis, or machine learning is a plus. For informal inquiry, or if interested in applying for the Data scientist position, please submit a CV along with names of 3 referees to: Dr. Abhi Banerjee <abhi.banerjee(a)newcastle.ac.uk>. More details here: https://loop.frontiersin.org/people/11499/overview and http://neuronic.mit.edu/ Best wishes, Abhi -- Abhishek Banerjee Senior Lecturer Head, Adaptive Decision-making Lab Biosciences Institute Newcastle University United Kingdom I neuronic.mit.edu Skype: amiappu I @abhii_mit

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Creating a list of important computational predictions
by Yiota Poirazi 04 Jan '21

04 Jan '21

Dear all, I believe you would agree that, the greatest recognition of our computational work comes with the experimental verification of our computational predictions. To highlight the most important outcomes of our theoretical work and facilitate a closer interaction with experimental labs so as to increase the chances of our predictions being experimentally tested, I would like to encourage you to nominate your favorite prediction at the following google form: https://docs.google.com/forms/d/e/1FAIpQLSeJZ2RrXJ0nZonIuyNzN0Cl gXDKDb7xTzoJOiqZTGxm9Kh7ow/viewform?c=0&w=1&usp=mail_form_link This effort started during the CNS 2017 meeting in Antwerp with the support of the OCNS Board. The resulting list will be posted on the CNS 2017 web site and disseminated in social media, as a reference for experimentalists. Thank you very much for supporting this important effort! Best wishes, Yiota Poirazi -- Panayiota Poirazi, Ph.D. Research Director Computational Biology Laboratory Institute of Molecular Biology and Biotechnology (IMBB) Foundation of Research and Technology-Hellas (FORTH) Vassilika Vouton, P.O.Box 1385, GR 70013, Heraklion, Crete GREECE Tel: +30 2810 391139 Fax: +30 2810 391101 Εmail: poirazi(a)imbb.forth.gr Lab site: www.dendrites.gr FENS-Kavli Network of Excellence <http://www.fens.org/Outreach/FENS-Kavli-Network-of-Excellence/> -- This message has been scanned for viruses and dangerous content by *E.F.A. Project* <http://www.efa-project.org>, and is believed to be clean. Click here to report this message as spam. <http://mailgate1.imbb.forth.gr/cgi-bin/learn-msg.cgi?id=4BCD7A00A1.A57D7&to…> -- Panayiota Poirazi, Ph.D. Research Director Computational Biology Laboratory Institute of Molecular Biology and Biotechnology (IMBB) Foundation of Research and Technology-Hellas (FORTH) Vassilika Vouton, P.O.Box 1385, GR 70013, Heraklion, Crete GREECE Tel: +30 2810 391139 Fax: +30 2810 391101 Εmail: poirazi(a)imbb.forth.gr Lab site: www.dendrites.gr FENS-Kavli Network of Excellence <http://www.fens.org/Outreach/FENS-Kavli-Network-of-Excellence/>

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ANDA 2020 - G-Node Advanced Neural Data Analysis Course, April 14-30, 2020, Jülich, Germany
by Thomas Wachtler 23 Dec '20

23 Dec '20

ANDA 2020 - G-NODE ADVANCED NEURAL DATA ANALYSIS COURSE April 14 - 30, 2020 Haus Overbach, Jülich-Barmen, Germany Techniques to record neuronal data from populations of neurons are rapidly improving. Simultaneous recordings from hundreds of channels are possible while animals perform complex behavioral tasks. The analysis of such massive and complex data becomes increasingly challenging. This advanced course aims at providing deeper training in state-of-the-art analysis approaches in systems neuroscience. The course is addressed to excellent master and PhD students and young researchers who are interested in learning advanced techniques in data analytics and in getting hands-on experience in the analysis of electrophysiological data. Internationally renowned researchers will give lectures on statistical data analysis and data mining methods with accompanying exercises. Students will define and perform their own analyses on provided data to solve a challenge. Participants are required to have a strong interest in data analysis, a background in a mathematical or related field, knowledge of algebra, matrix operations, and statistics, and need to have solid programming experience (preferably in Python). FACULTY · Moshe Abeles, Hebrew Univ. Jerusalem, Israel · Michael Denker, Jülich Research Center, Germany · Udo Ernst, Univ. Bremen, Germany · Sonja Grün, Jülich Research Center, Germany · Adam Kohn, Albert Einstein College of Medicine, New York, USA · Jakob Macke, TU Munich, Germany · Luca Mazzucato, Univ. of Oregon, Eugene, USA · Martin Nawrot, Univ. of Cologne, Germany · Yifat Prut, Hebrew Univ. Jerusalem, Israel · Hansjörg Scherberger, German Primate Center, Göttingen, Germany · Thomas Wachtler, LMU Munich, Germany TOPICS COVERED Single neuron properties and statistics · Stochastic processes · Surrogate methods · Detection of spatio-temporal patterns · Unitary Events · Statistical analysis of massively parallel spike data · Higher-order correlation analyses · Elephant toolbox · Spike-LFP relationship · Population coding · State space analysis · Machine learning · Data mining · Research data management and reproducibility REQUIREMENTS Applicants should be familiar with linear algebra, probability, differential and integral calculus and experienced using Python or Matlab. Preparatory reading material will be provided. Students should bring their own laptops and should be able to install software on their system. Students that do not have a suitable laptop should indicate this immediately after acceptance to the course. We will be able to provide a small number of laptops for the time of the course. COURSE FEE A course fee of 1000 Euros will be charged to cover costs for accommodation and meals. Limited financial support may be available for students that otherwise would not be able to attend, which is to be indicated in the application. HOUSING Accommodation in 2-bed rooms for students will be provided at the course site. HOW TO APPLY The application should include · a letter of motivation (max 1 page) · curriculum vitae (please indicate the relevant courses you have taken) · description of programming experience · a letter of recommendation. Please send all documents as a single PDF file to <advanced-course(a)g-node.org>. APPLICATION DEADLINE Applications must be received by NOVEMBER 15, 2019. Early application is encouraged. For further information see http://www.g-node.org/anda

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NEURAL COMPUTATION - February 1, 2020
by Terry Sejnowski 02 Oct '20

02 Oct '20

Neural Computation - Volume 32, Number 2 - February 1, 2020 Available online for download now: http://www.mitpressjournals.org/toc/neco/32/2 http://cognet.mit.edu/content/neural-computation ----- Article Face Representations via Tensorfaces of Various Complexities Sidney Lehky, Anh-Huy Phan, Andrzej Cichocki, and Keiji Tanaka Letters Transition Scale-spaces: A Computational Theory for the Discretized Entorhinal Cortex Nicolai Waniek From Synaptic Interactions to Collective Dynamics in Random Neuronal Networks Models: Critical Role of Eigenvectors and Transient Behavior Ewa Gudowska-Nowak, Maciej A Nowak, Dante Chialvo, Jeremi K Ochab, and Wojciech Mateusz Tarnowskic Synaptic Scaling Improves the Stability of Neural Mass Models Capable of Simulating Brain Plasticity Jure Demsar, Rob Forsyth Scaled Coupled Norms and Coupled Higher Order Tensor Completion Kishan wimalawarne, Makoto Yamada, and Hiroshi Mamitsuka Improving Generalization via Attribute Selection on Out-of-the-box Data Xiaofeng Xu, Ivor W. Tsang, and Chuancai Liu ------------ ON-LINE -- http://www.mitpressjournals.org/neuralcomp MIT Press Journals, One Rogers Street, Cambridge, MA 02142-1209 Tel: (617) 253-2889 FAX: (617) 577-1545 journals-cs(a)mit.edu ------------

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PhD position: Machine learning to record and enhance sleep and lucid dreaming
by Martin Dresler 03 Sep '20

03 Sep '20

Hi, Arenar B.V. and the Donders Institute offer a joint PhD position combining data science/AI and wearable EEG technology with sleep/dream research. In this project, the wearable sleep EEG headband iBand+ will be further developed and applied in several experimental studies. First, we will develop automatic sleep stage detection algorithms using machine learning strategies. We will then implement closed-loop acoustic stimulation procedures to enhance sleep slow oscillations to improve deep sleep. We will further develop combined acoustic and visual stimulation procedures which will allow to enhance self-awareness during sleep (i.e. lucid dreaming) and subsequent mood in the morning. The validity and efficacy of these procedures will be tested experimentally in large longitudinal studies in naturalistic home-based settings. The successful candidate will be centrally involved in the development, will lead different research projects within this general framework; will be closely involved in daily supervision of MSc students assisting the project; and will participate in the vibrant Donders Graduate School. Job details • 4 years at Donders, extension to permanent position at Arenar possible • Deadline: 31 August 2019 • Starting date: October/November, but somewhat flexible • Salary: starting with € 40000 gross per year Candidate profile • MSc-level background in Data Science, ML, AI, computer sciences, or adjacent field; • Proficiency in Python, C, C++, statistics • Interest in sleep, lucid dreaming, meditation • The capacity to participate in a collaborative, interdisciplinary, international research environment; • Fluency in written and spoken English. Candidates who only partially meet this profile are nonetheless strongly encouraged to apply! Organization The PhD project is a collaboration between Arenar B.V. and the Donders Institute. Arenar B.V. is a Dutch technology start-up based in Nijmegen, founded in 2016 by a team of engineers/developers with a combined technical industry experience exceeding 40 years working at leading technology companies such as NXP, Philips, Texas Instruments. Work in Arenar’s small enthusiastic team offers plenty of flexibility, responsibility and lots of influence on the product development. In particular, Arenar develops the iBand+ ( http://www.ibandplus.com) and many more upcoming innovative products. The project is embedded in the infrastructure of the Donders Centre for Cognitive Neuroimaging, providing a unique and stimulating learning environment for young researchers, including a high-profile graduate school and in-house methodological expert courses. Sleep research is a vibrant and rapidly growing field at the Donders Institute, with several new research groups in human and animal sleep research. The project is further embedded in the Radboud University Medical Center. Radboud UMC strives to be a leading developer of sustainable, innovative and affordable healthcare to improve the health and wellbeing of people and society in the Netherlands and beyond. Application Please apply with a brief motivation letter explaining your interest and qualifications regarding the position, your prior research/work experience, a CV, and contact information of two professional references: https://www.radboudumc.nl/en/vacancies/70061-phd-candidate-machine-learning… For specific questions about this position, please contact martin.dresler(a)donders.ru.nl Cheers, Martin -- Donders Sleep & Memory Lab, Radboud University Medical Center Kapittelweg 29, 6525 EN Nijmegen, Netherlands https://dreslerlab.org

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PhD Positions in Computational Neuroscience at the University of Hertfordshire
by Volker Steuber 30 Apr '20

30 Apr '20

PhD Positions in Computational Neuroscience Biocomputation Research Group Centre for Computer Science and Informatics Research University of Hertfordshire UK Applications are invited for PhD positions in the Biocomputation Research Group at the University of Hertfordshire. Projects involve the development and simulation of models of neurons and neuronal networks to study information processing in the brain and /or the application of machine learning techniques for the analysis of neural data. A description of our research interests and a list of publications can be found on our webpage (http://biocomputation.herts.ac.uk/). Applicants should have excellent computational and numerical skills and a very good first degree in computer science, biology, maths, physics, neuroscience, or a related discipline. Successful candidates are eligible for a research studentship award from the University (GBP 15,009 per annum bursary plus payment of the student fees). Applicants from outside the UK or EU are eligible. Research in Computer Science at the University of Hertfordshire has been recognised as excellent in the latest Research Excellence Framework Assessment, with 50% of the research submitted rated as internationally excellent or world leading. The Centre for Computer Science and Informatics Research provides a very stimulating environment, offering a large number of specialised and interdisciplinary seminars as well as general training and researcher development opportunities. The University is situated in Hatfield, in the green belt just north of London. Please contact Dr Volker Steuber for informal enquiries. Application forms are available under http://www.herts.ac.uk/apply/schools-of-study/computer-science/our-research… and should be returned to [https://www.herts.ac.uk/__data/assets/image/0016/203434/uhsociallogo.png]<http://www.herts.ac.uk/apply/schools-of-study/computer-science/our-research…> The PhD Programme in Computer Science<http://www.herts.ac.uk/apply/schools-of-study/computer-science/our-research…> See a list of exciting research topics www.herts.ac.uk Lynette Spelman and Emma Thorogood Research Student Administrators University of Hertfordshire College Lane Hatfield, Herts AL10 9AB tel: +44 (0)1707 286083 doctoralcollegeadmissions(a)herts.ac.uk The short-listing process will begin on 1 July 2019.

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