July 2019 - Comp-neuro - lists.cnsorg.org

15th Granada Seminar on Stochastic and Collective Effects in Neural Systems
by Prof. Dr. Joaquín J. Torres July 4, 2019

July 4, 2019

Dear Computational Neuroscience community This is an official announcement of the next "15th Granada Seminar on Computational and Statistical Physics" that will be held in Granada Spain, next September 17-20, 2019 in the Science Faculty of the University of Granada, Spain. The Granada Seminar is a topical conference whose pedagogical power is especially channelled towards young researchers. In fact, one interesting aspect of this meeting is the opportunity given to young researchers to present their results and to discuss their problems with leading specialists. The Granada Seminar is Organized by the "Institute Carlos I for Theoretical and Computational Physics, University of Granada, and it is Sponsored by: - Institute Carlos I, for theoretical and computational physics, University of Granada: http://ic1.ugr.es/home/ - European Physical Society This year edition the main topic of the conference is "Stochastic and Collective Effects in Neural Systems" including Biological aspects, Modeling, Dynamics, Networks, Function and Applications. The aim of this meeting is to bring together scientists interested in Neural Systems and their statistical and collective effects from real experiments, theoretical and computational models to applications. Confirmed Main Speakers: Roberto Barrio, Universidad de Zaragoza (Spain): Insect movement gaits: neuron model, CPG and patterns Ginestra Bianconi, Queen Mary University of London (UK) Jesús Cortés, Ikerbasque (Spain) Lucilla de Arcangelis, University of Campania "Luigi Vanvitelli" (Italy) Jose Maria Delgado, Universidad Pablo de Olavide (Spain): Learning as a functional state of the brain Andrea Gabrielli, Istituto dei Sistemi Complessi (Italy): Brain Network Topology Maps Schizophrenia Dysfunctional Substrates Andre Longtin, University of Ottawa (Canada): Detecting and Learning in Noisy Neurons: From Dendrites to Spontaneous Movements Joaquin Marro, Universidad de Granada (Spain):Is the Mind just an assembly of Phase Transitions? Jorge F. Mejías, University of Amsterdam (The Netherlands) Cyriel Pennartz, University of Amsterdam (The Netherlands): Predictive representations and population coding in visual and multisensory systems Dietmar Plenz, NIH National Institute of Mental Health (USA) Ander Ramos, Tecnalia (Spain) Alex Roxin, CRM Barcelona (Spain):A network model of place-cell turnover in CA1 Mavi Sánchez-Vives, Institut d'investigacions Biomèdiques (Spain) Samir Suweis, Universita di Padova (Italy): Simple (but not too simple) models to investigate complex brain dynamics Yuhai Tu, IBM Thomas J. Watson Research Center (USA): Optimal coding strategies in the periferal olfactory systems: Compressed sensing for an array of nonlinear olfactory receptor neurons with and without spontaneous activity Pablo Varona, Universidad Autonoma de Madrid (Spain) People interested to attend the conference and present their contributions please follow the link below for further information: http://ergodic.ugr.es/cp/index.php Contributions to the conference will be invited to submit an original manuscript for a forthcomming "Special Issue on Emergent Effects in Stochastic Neural Networks with Application to Learning and Information Processing", in the Elsevier Journal Neurocomputing (Impact Factor: 4.072, Q1) -- Prof. Dr. Joaquín J. Torres Department of Electromagnetism and Physics of the Matter. Institute "Carlos I" for Theoretical and Computational Physics. University of Granada.

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DEADLINE NEAR: IBRO-SIMONS COMPUTATIONAL NEUROSCIENCE IMBIZO in CAPE TOWN
by Tim Vogels July 4, 2019

July 4, 2019

Dear all, The DEADLINE for next year’s IMBIZO is approaching very quickly, with only 4 days left. Don’t let this opportunity slip by, if you are hoping to join the most diverse neuroscience summer school at the most beautiful beach in the world! We are very excited to announce that we have three new faculty this year, adding Prof. Eve Marder, of Brandeis University, Gruber and Kavli Prize winner, past president of SfN and generally awesome person in Neuroscience, coming with Prof Arthur Wingfield, also of Brandeis and also awesome person in neuroscience. And Prof. Henning Sprekeler, Technical University Berlin, Bernstein Award winner, and ALSO generally awesome person in neuroscience to our already great roster of lecturers. If you know anyone who would benefit from a diverse and extraordinary computational neuroscience summer school, please forward this information: IBRO-SIMONS COMPUTATIONAL NEUROSCIENCE IMBIZO #isiCNI2020 5 - 26 January 2020, Muizenberg Beach, Cape Town, South Africa http://imbizo.africa/ <http://imbizo.africa/> Application deadline: 8th July 2019 The #isiCNI2020 is a southern hemisphere summer school aiming to promote computational neuroscience in Africa. It will bring together international and local students under the tutelage of the world's leading experts in the field. Like its international sister courses, this three-week summer school aims to teach central ideas, methods, and practices of modern computational neuroscience through a combination of lectures and hands-on project work. Mornings will be devoted to lectures on topics across the breadth of experimental and computational neuroscience. The rest of the day will be spent working on research projects under the close supervision of expert tutors and faculty. Individual research projects will focus on the modelling of neurons, neural systems, behaviour, the analysis of state-of-the-art neural data, and the development of theories to explain experimental observations. Who should apply? This course is aimed at Masters and early-PhD level students though Honours or advanced undergraduates may also apply. Postdoctoral students who can motivate why the course would benefit them are also encouraged to apply, Students should have sufficient quantitative skills, (e.g. a background in mathematics, physics, computer science, statistics, engineering or related field). Some knowledge of neural biology will be useful but not essential. Experimental neuroscience students are encouraged to apply, but should ensure that they have a reasonable level of quantitative proficiency (i.e. at least second-year level mathematics or statistics and have done at least one course in computer programming). Please distribute this information as widely as you can. Essential details * Fee (which covers tuition, lodging, and meals): 1100 EUR Thanks to out generous sponsors, significant financial assistance is available to reduce and waiver fees for students, particlualry for African applicants. We also hope to provide some travel bursaries for interrnational students. If you are in need of financial assistance to attend the Imbizo, please state so clearly in the relevant section of your application. * Application deadline: 30th June 2019 * Notification of results: late August 2019 Information and application https://imbizo.africa/ <http://isicni.gatsby.ucl.ac.uk/> Questions? isicn.imbizo(a)gmail.com <mailto:isicn.imbizo@gmail.com> What is an Imbizo? \ɪmˈbiːzɒ\ | Xhosa - Zulu A gathering of the people to share knowledge. CONFIRMED FACULTY Demba Ba - Harvard University Adrienne Fairhall - Washington University Peter Latham - University College London Timothy Lillicrap - Google DeepMind Eve Marder - Brandeis University Joseph Raimondo - University of Cape Town Srikanth Ramaswamy - EPFL Lausanne Athanassia Papoutsi - IMBB-FORTH Evan Schaffer - Columbia University Anna Schapiro - University of Pennsylvania Henning Sprekeler - Technical University of Berlin Thomas Tagoe - University of Ghana Misha Tsodyks - Weiszmann Institute of Science Tim Vogels - University of Oxford Arthur Wingfield - Brandeis University Byron Yu - Carnegie Mellon University Tutors Everton Agnes University of Oxford Annik Carson - McGill University Chris Currin - University of Cape Town Callie Federer - University of Colorado Grace Lindsay - University College London Richard Pang - University of Washington Organisers Christopher Currin (University of Cape Town, South Africa) Emma Vaughan (Conference Managemant Centre) DIRECTORS Peter Latham (Gatsby Unit for Computational Neuroscience, UCL, UK) Joseph Raimondo (University of Cape Town, South Africa) Tim Vogels (University of Oxford, UK) Sponsors The isiCNI is made possible by the generous support from the Simons Foundation (https://www.simonsfoundation.org <https://www.simonsfoundation.org/>) and the International Brain Research Organisation (IBRO) (http://ibro.info <http://ibro.info/>) Organizational Affiliates University of Cape Town, University College London, University of Oxford, TReND in Africa <http://trendinafrica.org/>, CNCB <http://www.cncb.ox.ac.uk/>, Gatsby Foundation <http://www.gatsby.org.uk/>, IBRO African Center for Advanced Training in Neurosciences at UCT

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Available Slot for Intensive Talks at CNS 2019 Workshop (W9) on "Neural Multiplexed Coding, Coexistence of Multimodal Coding Strategies in Neural Systems"
by Milad Lankarany July 3, 2019

July 3, 2019

Dear CNS-2019 attendees, Our workshop (*W9*) on "*Neural Multiplexed Coding*" will be held at CNS 2019 (Barcelona), on July 17th. Our workshop hosts 6 prestigious speakers (see our website: https://sites.google.com/view/cns-workshop-on-neural-mux/home) presenting their recent researches in 30-45 minutes, as well as a few number of intensive talks, each lasting 10-15 minutes. This is a new schedule for our workshop that we want to try, i.e., a workshop comprising larger talks (30-45 mins) + short intensive talks (10-15 mins). As the intensive talks are short, we would like to invite more speakers. So, any scientist (preference is given to Postdoc) that participates in CNS 2019 and is interested in our workshop can send me his/her request and the title of the presentation. Email: milad.lankarany(a)uhnresearch.ca or milad.lankarany(a)gmail.com Best Regards, Milad Lankarany, Ph.D. <https://sites.google.com/view/lnsbsp/home?authuser=0>

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Two Postdoctoral Positions in Auditory Biophysics: Optics & Theory
by Kozlov, Andriy July 3, 2019

July 3, 2019

We welcome applications for postdoctoral candidates with expertise in optics, instrument development, or theoretical modelling who want to apply their skills in the field of the biophysics of hearing. Two positions in Dr. Andrei Kozlov’s lab (www.kozlovlab.com<http://www.kozlovlab.com/>) in the Department of Bioengineering, Imperial College London are supported by a five-year Wellcome Trust Investigator Award: one experimental and one theoretical. We investigate mechano-electrical transduction by hair cells, the receptor cells of the inner ear. These cells can detect and amplify atomic-scale vibrations at thousands of cycles per second. We are interested in understanding the mechanisms underlying this extreme sensitivity. To achieve our goal, we combine novel experimental and theoretical approaches. The experimental position will focus on developing new optical methods, including laser interferometry, and combining them with electrophysiology. Practical knowledge of optics or optomechanics is essential for this work. For more information about this kind of research, see Kozlov et al., Nature, 2011. The theoretical position focuses on modelling mechano-electrical transduction, combining analytical and numerical techniques, and is in collaboration with Dr. Thomas Risler at Institut Curie in Paris. The successful candidate for this role will have a strong background and track record in Theoretical Soft Matter, Statistical Physics or a related discipline. For more information about this kind of research, see Gianoli, Risler and Kozlov, PNAS, 2017. The positions will start between September 2019 and January 2020. Please send the names of three references, a CV with a list of publications and preprints, and an application letter describing your interests and skills. Informal inquiries are welcome. Contact: Andrei Kozlov a.kozlov(a)imperial.ac.uk<mailto:a.kozlov@imperial.ac.uk>

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PhD Position in Data Science and Modeling in Neuroimaging at Jülich Research Centre (Germany)
by Oleksandr Popovych July 3, 2019

July 3, 2019

PhD Position in Data Science and Modeling in Neuroimaging at Jülich Research Centre and University of Düsseldorf, Germany One PhD position is available in data science and computational modeling with a focus on the data-driven analysis of neuroimaging data in the lab of Prof. Dr. Simon Eickhoff at Jülich Research Centre and University of Düsseldorf in Germany. The PhD candidate will work on projects aiming to study the effective connectivity of functional brain networks derived from task-based and resting-state fMRI data. In particular, applicability, reliability and limitations of the Dynamical Causal Modeling (DCM) approach will be investigated in various large samples of healthy subjects and patients and compared to other approaches. We are specifically looking for candidates with training in data science/computational neuroscience/applied mathematics/physics or related fields and skills in programming and big data analysis. The candidate will be responsible for the preparation and preprocessing of the necessary fMRI data, development and implementation of data analysis pipelines, as well as writing manuscripts for publication. The position provides a unique opportunity to work in an interdisciplinary environment and training in processing, analysis and modeling of neuroimaging data. More details on the lab: http://www.fz-juelich.de/inm/inm-7/EN/ Requirements: Master’s degree in Applied Mathematics, Physics, Engineering, Computer Science or related fields. Experience with neuroimaging data processing and analysis and related software packages (FSL, SPM, MRtrix, etc.). Experience with programming languages such as Matlab/Python/Shell scripts/C/C++. Familiarity with mathematical data modeling, parallel programming and simulations on high-performance computational clusters will be a plus. Strong English-language writing & communication skills. To apply: Please send your CV, MA certificate, names of two referees, a one-page letter of motivation (emphasizing any related work/projects), up to 3 representative publications and/or examples of program code, if available, to Dr. Oleksandr Popovych via email (o.popovych(a)fz-juelich.de) Please mention “PhD application DCM” in the subject. -- --------------------------------------- PD Dr. Oleksandr Popovych Institute of Neuroscience and Medicine (INM-7: Brain and Behaviour) Research Centre Jülich 52425 Jülich, Germany Tel: +49 2461 61 3332 eMail: o.popovych(a)fz-juelich.de http://www.fz-juelich.de/inm/inm-7/EN/Home/home_node.html ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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PhD Position in Computational Neuroscience and Neuroimaging at Jülich Research Centre (Germany)
by Oleksandr Popovych July 3, 2019

July 3, 2019

PhD Position in Computational Neuroscience and Neuroimaging at Jülich Research Centre and University of Düsseldorf, Germany One PhD position is available in computational neuroscience with a focus on mathematical modeling of brain dynamics based on neuroimaging data in the lab of Prof. Dr. Simon Eickhoff at Jülich Research Centre and University of Düsseldorf in Germany. The PhD candidate will work on projects involving large-scale dynamical brain models derived from multimodal neuroimaging data (structural, functional & diffusion magnetic resonance imaging, MRI) combined with numerical simulations and analysis of model dynamics and parameter space. We are specifically looking for candidates with training in applied mathematics/computational neuroscience or related fields and experience in programming and numerical simulation of neuronal models/nonlinear dynamical systems. The candidate will be responsible for preparation of necessary neuroimaging data, derivation, validation and analytical and numerical investigation of the whole-brain dynamical models, and writing manuscripts for publication. The position provides an opportunity to work in an interdisciplinary environment and training in mathematical modeling of neuroimaging data and methods for data analysis. More details on the lab: http://www.fz-juelich.de/inm/inm-7/EN/ Requirements: Master’s degree (or equivalent) in Applied Mathematics, Physics, Engineering, Computer Science or a related field. Experience with programming languages such as C/C++/CUDA/Python/Matlab/R. Familiarity with numerical simulations of nonlinear dynamical systems/differential equations/neuronal models. Experience with parallel programming and simulations on high-performance computational clusters will be a plus. Experience with neuroimaging data processing and analysis and related software packages (FSL, SPM, MRtrix, etc.) will be of advantage. Strong English-language writing & communication skills. To apply: Please send your CV, names of two referees, one-page letter of motivation (emphasizing any related work/projects), up to 3 representative publications and/or examples of program code, if available, to Dr. Oleksandr Popovych via email (o.popovych(a)fz-juelich.de) Please mention “PhD application CNS” in the subject. -- --------------------------------------- PD Dr. Oleksandr Popovych Institute of Neuroscience and Medicine (INM-7: Brain and Behaviour) Research Centre Jülich 52425 Jülich, Germany Tel: +49 2461 61 3332 eMail: o.popovych(a)fz-juelich.de http://www.fz-juelich.de/inm/inm-7/EN/Home/home_node.html ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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Open Source Brain workshop 9-11 Sept 2019 & new publication
by Gleeson, Padraig July 2, 2019

July 2, 2019

[Apologies if you receive multiple copies of this due to cross-posting] The 2019 Open Source Brain workshop will be held in Alghero, Sardinia on 9-11th September 2019. Full details: http://www.opensourcebrain.org/docs/Help/Meetings#OSB_2019 Open Source Brain (http://www.opensourcebrain.org) is a platform for sharing and collaboratively developing models in computational neuroscience. Models of cells and circuits in standardised formats can be visualised, analysed and simulated through a standard web browser. A key driver for the development of this technology is to improve accessibility, scientific scrutiny, reproducibility and reuse of models of brain function. The platform is described in a recent paper in Neuron: https://www.cell.com/neuron/fulltext/S0896-6273(19)30444-1 The 2019 OSB Workshop will highlight the latest features of OSB and engage current and future users of the platform through invited talks, posters, hands on demonstrations, and user presentations. Since we are substantially expanding the functionality of Open Source Brain to enable sharing of standardized experimental data used to build and test the models of neurons and circuits, this year’s meeting will have two key themes: 1) Accessible sharing of cellular neuroscience data Through support for the Neurodata Without Borders (NWB) format, OSB will facilitate sharing of multiple types of experimental data used to constrain computational models, including electrophysiological recordings, Ca2+ fluorescence imaging, 2D, 3D and 4D imaging and behavioural data. Challenges, requirements and solutions to data standardization will be discussed. 2) Modelling cortical structures across scales Cortical networks are modelled at many scales from abstract representations of interacting populations (neural masses) to networks of biophysically and morphologically detailed cell models. NeuroML is being expanded to cover a greater range of these models, which will allow them to be shared and simulated on OSB, facilitating comparison of models and ideas between researchers. This ongoing work is taking place as part of the SIG on Standardised Representations of Network Structures<https://www.incf.org/activities/standards-and-best-practices/incf-special-i…>. Registration The registration fee for the meeting for 3 days will be £130. This will help cover organisation and speaker costs, meeting room hire, lunch, tea and coffee for 3 days and one workshop dinner. Please register here<https://onlinestore.ucl.ac.uk/conferences-and-events/faculty-of-life-scienc…>. Registration closes on 1st September 2019. Confirmed speakers Yazan Billeh (Allen Institute, USA) Matteo Cantarelli (MetaCell Ltd) Alex Cayco Gajic (UCL, UK & École Normale Supérieure, France) Sharon Crook (Arizona State University, USA) Jeffrey S. Diamond (NINDS, USA) Matt Earnshaw (University College London, UK) Jan Fousek (Aix Marseille Université, France) Padraig Gleeson (University College London, UK) Boris Marin (Universidade Federal do ABC, Brazil) Diego Restrepo (University of Colorado, USA) Simon Schultz (Imperial College, UK) Angus Silver (University College London, UK) Sacha van Albada (Jülich Research Centre, Germany) For more details please see: http://www.opensourcebrain.org/docs/Help/Meetings#OSB_2019 The OSB 2019 organising committee Padraig Gleeson Matt Earnshaw Angus Silver

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