July 2019 - Comp-neuro - lists.cnsorg.org

NEURON course at SFN 2019 meeting
by Carnevale, Nicholas 29 Jul '19

29 Jul '19

Space is still available for the NEURON course that will be held at a location on the campus of the Feinberg School of Medicine in downtown Chicago, as a satellite session to the 2019 meeting of the Society for Neuroscience. This course is for you if you're * a lab director trying to decide whether to add computational modeling to your research program * a grad student or postdoc who is just getting started in modeling * an established NEURON user who wants to find out about NEURON's latest features It starts with a practical introduction that reviews basic concepts, presents a workflow for building and using mechanistic models of cells and networks, and moves on to topics that include: * how to speed up simulations * how to use Python with NEURON (while still taking advantage of NEURON's GUI!) * how to model reaction-diffusion with the RxD class For more information and the registration form, see https://neuron.yale.edu/neuron/static/courses/chi2019/chi2019.html --Ted -- This message was composed in plain text and may contain plain text formatting of source code, tables, and lists. Reading it in a client that ignores "excess" whitespace characters or line breaks may destroy that formatting, making this message unreadable. Outlook does that by default; learn how to disable the "Auto Remove Line Breaks" ""feature"" at support.microsoft.com

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Associate professor in theoretical neuroscience position at Donders Centre for Neuroscience, Radboud University (Nijmegen, The Netherlands)
by Paul Tiesinga 29 Jul '19

29 Jul '19

Dear colleagues Were are recruiting a new faculty in the general area of theoretical (and/or computational) neuroscience at the associate professor level. The position is based in the Neuroinformatics department at the Faculty of Science at Radboud University (Nijmegen, the Netherlands) and embedded in the Donders Institute. We are especially encouraging female candidates to apply. Detailed information about the position, as well as instructions of how to apply are found at https://www.academictransfer.com/nl/284454/associate-professor-of-theoretic… . Informal enquiries can be directed to Paul Tiesinga (p.tiesinga(a)science.ru.nl, Head of department) or Bert Kappen (b.kappen(a)donders.ru.nl, Chair of the search committee). Should you know of excellent candidates that may not have been reached by this advertisement, please feel free to forward this email to them or to forward their contact information to us at the aforementioned email addresses. Best regards, Paul Tiesinga, on behalf of the search committee.

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search for neuro faculty at Northwestern University
by Sara A. Solla 26 Jul '19

26 Jul '19

The Department of Physiology at Northwestern University, where I work, seeks a full-time tenure track Investigator at the rank of Assistant, Associate or full Professor. Applications from the circuit, systems, and computational neuroscience community would be welcomed. Northwestern has a large neuroscience community consisting of over 150 faculty members, located on both Chicago and Evanston campuses, providing many opportunities for collaboration. The scientific environment is collegial, collaborative, and rich with core facilities, robust cross-disciplinary graduate training programs, and diverse expertise. Candidates should have a PhD, MD/PhD or MD degree, significant research experience, and evidence of sustainable extramural funding. Those seeking appointment at the associate or full professor level should have a record of outstanding research productivity and sustained grant support. When applying, please upload a cover letter, curriculum vitae, a two-page description of research accomplishments/plans, and a completed list of references form to suggest the names of individuals who could write letters of reference on your behalf. See https://www.nature.com/naturecareers/job/faculty-position-in-neuroscience-f…

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Three-year postdoc position in auditory neuroengineering at Imperial College London
by Reichenbach, Johann D T 26 Jul '19

26 Jul '19

Postdoctoral Research Associate (PDRA) Duration: Three years, with possibility of extension Sensory Neuroengineering group Imperial College London PI: Dr. Tobias Reichenbach http://www.bg.ic.ac.uk/research/reichenbach/ Imperial College London is a science-based institution with the greatest concentration of high-impact research of any major UK university. The Faculty of Engineering, consistently rated among the best in the world, is made up of 10 academic departments and is committed to increasing its research activity by focusing on engineering-led multidisciplinary growth areas that target a number of global challenges. All of our academic departments are located on a single campus in South Kensington, giving a concentration of talent that creates a stimulating and vibrant research community. You can find out more about our staff benefits, including generous annual leave entitlements and our excellent professional development opportunities, here: http://www.imperial.ac.uk/job-applicants/staff-benefits/. This project is part of a recently funded EPSRC fellowship with the project partners Google and Oticon as well as further academic partners in Aachen, Paris and London. It tackles multisensory integration, one of the main issues in real-world speech comprehension. Multisensory speech perception such as through lip reading can indeed help to better understand a talker in background noise. However, the neural mechanisms behind this multisensory integration remain poorly understood This research project will tackle this challenge through experimental and mathematical techniques. Neuroimaging data acquisition will focus on EEG recordings, which will be analysed using advanced statistical models including deep neural networks. The project will also explore computational models of multisensory integration in cortical networks. Applicants should have an undergraduate degree/ MSc (or equivalent) in engineering, mathematics, physics or neuroscience with experience in signal processing, machine learning as well as human neuroscience. More information and a link to the application form can be found here: http://www.imperial.ac.uk/jobs/description/ENG00933/research-assistantassoc… Application deadline is 29 September 2019. ------------------------------------------- Tobias Reichenbach Senior Lecturer (Associate Professor) Department of Bioengineering Imperial College London South Kensington Campus SW7 2AZ London, UK http://www.bg.ic.ac.uk/research/reichenbach/

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Post-Doc position (Neuronal Rhythms in Movement unit, OIST, Okinawa)
by Marylka Yoe Uusisaari 26 Jul '19

26 Jul '19

OIST is a young, fast-growing research-oriented interdisciplinary graduate university, located on the tropical paradise island of Okinawa ( https://www.visitokinawa.jp/). OIST relies on a cross-disciplinary approach, with an emphasis on creativity and exchange, to offer unique, individualized graduate training. Despite being a newcomer in the academic world, OIST was recently ranked as #10 in the world on Normalized Nature Index ( https://www.natureindex.com/annual-tables/2019/institution/academic-normali… ). The Neuronal Rhythms in Movement (nRIM; https://groups.oist.jp/nrim) unit at OIST is looking for an inspired applicant with a PhD in neuroscience, bioengineering, neuromechanics, biophysics or similar related field to lead a collaborative, generously-funded project exploring how abstract patterns of neuronal activity are translated into precisely-timed motor actions using rodents. Our main focus is on natural movements such as running on uneven surface, climbing and jumping that require continuous modulation of behavioral programs. The successful applicant will be combining our novel, high-resolution 3D motion capture system with deep-brain imaging (Inscopix nVoke system) and optical/pharmacological manipulation to disentangle the circuitry mechanisms underlying fine motor control. The work will be conducted in tight collaboration with in vitro physiologists and anatomists, and complemented with computational approaches from our collaborators. Working with nRIM at OIST offers access to impressive research infrastructure including state-of-the-art imaging as well as scientific computing facilities. Importantly, we are dedicated to training early-career scientists for their best possible future and offer high-level professional and career development in form of personalized counseling, workshops and seminars, in addition to extensive opportunities for travel and networking within academia and industry as well as coaching in grant-writing. nRIM is a tight group of extraordinary individuals, and to ensure perfect fit to the group, shortlisted applicants will be invited to visit OIST for a 3-day interview meeting before any decisions are made. Qualifications: - A PhD (obtained within last 5 years) in relevant disciplines, such as biosciences, neuroscience, bioengineering, physics or computer science - Experience in building and programming (MATLAB) experimental systems - A record of first-author, high-impact publications is not required as we do not believe that scientific excellence necessarily correlates with them. However, a record of research and publication activity is required. - Prior experience with animal handling, olivo-cerebellar systems or calcium imaging is greatly appreciated even if not necessarily required; however, motivation and capability to learn new approaches such as these is a must. - nRIM is a team endeavor; thus, ability to work effectively with a group is a must - Capabilities related to managing complex data, record-keeping, and planning experimental schedules are indispensable. In accordance of OIST regulations, salary and benefits, including paid leave and summer holidays, health care and relocation support to Okinawa, will be offered at a competitive rate based on age and experience. Furthermore, as a part of OIST strategies for Good Research Environment, dedicated mentoring will be provided to ascertain best possible career development for researchers at all stages. The working language at all operational levels is English, and Japanese language classes are offered on-site free of charge. OIST is an equal opportunity, affirmative action employer implementing progressive workplace policies and strongly encourages applications from women and other under-represented groups. Whenever possible, OIST will attempt to help in finding employment for the employee’s partner. To apply, please send a cover letter describing your motivation for this position, CV & publications list, as well as contact information for 2 referees to uusisaari(a)oist.jp by September 30th, 2019. Informal queries are also welcomed.

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Computational Neuroscience opportunity -- startup tackling brain disorders with ML
by Nate Boyd 26 Jul '19

26 Jul '19

System1 (system1.bio) is a drug discovery company for neurological and psychiatric disorders, combining applied research in 3D cell culture biology (cerebral organoids) and machine learning. We are looking for a senior scientist to lead development of our experimental neuroscience and machine learning platform. Help us create a unified understanding of neural pathways and drug interactions from calcium imaging, electrophysiology, and other data sets. Steer our research, coordinate efforts across biology and computation, and build our neuroscience team as we grow. This position reports to the CEO. Founded by repeat entrepreneurs and researchers from respected labs, System1 is assembling a multidisciplinary team with the goal of increasing understanding of how our neural circuitry works, how it fails, and how to heal it. We're located in San Francisco and have raised $30M of venture funding to date. More about us: https://docs.google.com/document/d/1rAW8riYpupEoynWLM7quNFFCrL_FTkDdJJleoS9… Organoid technology review: http://dev.biologists.org/content/144/6/938 Contact: nate(a)plusplustalent.com Warm regards, Nate Boyd linkedin.com/in/nateboyd

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Open postdoctoral researcher position at Stanford
by Aaron Milstein 25 Jul '19

25 Jul '19

A postdoctoral research position is available in the lab of Dr. Ivan Soltesz in the Dept. of Neurosurgery, Stanford University School of Medicine, also affiliated with the Wu Tsai Neurosciences Institute at Stanford. The position is fully funded by NIMH through an NSF-NIH Collaborative Research in Computational Neuroscience research grant awarded to Stanford Instructor Dr. Aaron Milstein. The project is an international collaboration with Dr. Marlene Bartos at the University of Freiburg, Germany. The postdoctoral researcher will be co-mentored by Drs. Soltesz and Milstein. We are seeking a talented scientist to use modern computational modeling and data analysis methods to understand the roles of specific inhibitory and excitatory cell types found in hippocampal microcircuits in controlling spatial learning and memory. In particular, we are interested in nonlinear signal integration and associative synaptic plasticity mechanisms in the dendrites of granule cells in the hippocampal dentate gyrus, and their regulation by a unique class of excitatory interneurons implicated in epilepsy, the dentate mossy cells. This position represents a unique opportunity be co-mentored by multiple investigators at the forefront of the field, and includes funded travel to interact with experimental collaborators and to attend research conferences in the U.S. and Europe. We urge interested applicants to read the following papers describing our recent work, and to include in their cover letter any insighful comments and questions that they may have: http://doi.org/10.1126/science.aan3846 http://doi.org/10.1126/science.aan4074 http://doi.org/10.1038/s41586-018-0191-2 Required Qualifications: Ph.D. in neuroscience, computational neuroscience, bioengineering, or computer science Prior experience in modeling biological neural circuit function and/or plasticity in health and/or disease Required Application Materials: C.V. Contact information for 2 professional references A brief personal statement describing your perspective on biological neural circuit function and/or plasticity, including insightful comments and questions pertaining to recent publications by Drs. Aaron Milstein, Ivan Soltesz, Marlene Bartos and colleagues Stanford is an equal opportunity employer and all qualified applicants will receive consideration without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, veteran status, or any other characteristic protected by law. Apply here: https://postdocs.stanford.edu/prospective/opportunities/open-postdoctoral-p…

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The Virtual Brain Node#9 Workshop, August 31 2019, Warsaw
by Julie Courtiol 25 Jul '19

25 Jul '19

*TheVirtualBrain <https://www.thevirtualbrain.org/>* team is organising its *Node 9 Workshop on August 31, in Warsaw, Poland*! Please consider attending the workshop and sharing the information to your group in case this would be useful for them! For more infos, click here <https://www.thevirtualbrain.org/tvb/zwei/newswire-event-single/253901-works…> Hope to see you there! Best regards, Julie Courtiol Research Fellow Charité Universitätsmedizin Berlin ---------------------------------------- The workshop is dedicated to a theoretical and practical *understanding of large-scale brain network modeling using the open-source neuroinformatics platform The Virtual Brain (TVB)*. This simulation environment enables the biologically realistic modeling of whole-brain network dynamics across different brain scales, using personalized structural connectome-based approach. Configurable brain network models generate macroscopic neuroimaging signals including functional MRI, intracranial and stereotactic EEG, surface EEG and MEG for single subjects. Researchers from different backgrounds can benefit from an integrative software platform including a simulation core written in Python and a supporting framework for data management (generation, organization, storage, integration and sharing). The workshop is an official training event of the *NeuroInformatics 2019 <https://www.neuroinformatics2019.org/>* that will be held on September 1-2, also in Warsaw. *:: Workshop Format * • Lectures • Hands-on tutorials *:: Workshop Program Overview* • Architecture of TVB • Theoretical background of large-scale brain network modeling • Interacting with TVB using GUI and/or CLI • Personalization pipeline • Modeling resting-state networks, brain disorder, stimulation, mouse brain activity, etc. *Please make sure to register early as we only offer limited seats to ensure there are enough tutors for you.* *REGISTRATION CLOSES JULY 31st, 2019* *IMPORTANT TO NOTE* **Anyone is welcome to register to TVB Node #9!** You DO NOT need to be registered for NeuroInformatics 2019 in order to register for this workshop. Registration for TVB Node #9 workshop is separated from registration to NeuroInformatics 2019. *REGISTER HERE <https://en.xing-events.com/tvb-node9>*

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open faculty and fellow positions at CSHL
by Engel, Tatiana 25 Jul '19

25 Jul '19

Dear colleagues, I would like to bring to your attention the open Fellow and Faculty positions at the Cold Spring Harbor Laboratory. The Fellow position is an opportunity for early independence for candidates who recently finished or are about to finish their PhD, it provides resources for building a small research group and a possibility of promotion to the faculty. Both positions include computational/theoretical neuroscience. Please do not hesitate to contact me if you have any questions about the positions or how to apply. 1) Faculty: https://www.cshl.edu/about-us/careers/faculty-positions/ 2) Fellow: https://www.cshl.edu/research/fellows-programs-at-cshl/cshl-fellows-program… Sincerely, Tatiana -- Tatiana Engel, PhD Assistant Professor Cold Spring Harbor Laboratory 1 Bungtown Road, Cold Spring Harbor, NY (+1) 408 409 3647

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Postdoctoral Position in Pain and Affect
by Atlas, Lauren (NIH/NCCIH) [E] 24 Jul '19

24 Jul '19

Our lab, the Section on Affective Neuroscience and Pain (ANP Lab), is recruiting one to two postdoctoral researchers with expertise in computational modeling, fMRI, and/or affective science to lead new projects on the psychological modulation of pain and emotional experience using high field imaging (7-Tesla MRI). Our lab is part of NIH's intramural research program, and is affiliated with the intramural programs of NCCIH, NIMH, and NIDA. For more information on postdoctoral positions within NIH, see https://www.training.nih.gov/programs Research in the ANP Lab focuses on the mechanisms by which expectations, learning, and other cognitive and affective factors influence pain, emotion, and clinical outcomes. We combine approaches from experimental psychology, neuroimaging, psychophysiology, and computational modeling to investigate pain and emotional experience in healthy individuals as well as individuals with chronic pain and/or affective disorders. We are particularly interested in the intersection of appetitive and aversive learning, how psychosocial factors influence pain and clinical outcomes, and questions motivated by pain’s central role in the opioid crisis. Postdoctoral researchers are expected to develop their own projects, with guidance, and to collaborate with other researchers in the lab. For more information about our research, see: https://nccih.nih.gov/research/intramural/atlas-lab We are looking for someone to spearhead new projects using high field imaging (7T-FMRI) to examine pain and perception across domains. The candidate should have a strong background in psychology and neuroscience and must have received a Ph.D. in a relevant field by the time of appointment. Candidates with successful publications in the fields of pain, emotion, and/or computational modeling are encouraged to apply. Postdoctoral positions require experience with 1) design of behavioral and fMRI experiments and 2) analysis of fMRI data using statistical parametric mapping packages (SPM, AFNI, etc.). Programming skills in MATLAB, C, and/or Python are highly desirable. These requirements will be flexible for candidates with clinical experience in pain populations. Appointments and salary are commensurate with research experience and accomplishments. The candidate will be supported with the excellent intramural NIH fellowship in a stimulating and interactive research environment at NIH. NIH has exceptional multidisciplinary research facilities including structural and functional MRI, MEG, PET, and TMS. Our lab is fully funded with dedicated weekly scan time, a full-time data analyst, and the opportunity to work alongside some of the world’s foremost fMRI experts. Training in advanced imaging and other techniques is available, as are courses in grant writing and career development. How To Apply Applicants should submit a CV, a brief description of research interests and career goals, and the names of three references to: lauren.atlas(a)nih.gov(Investigator/Chief, Section on Affective Neuroscience and Pain, NCCIH/NIMH/NIDA, NIH). Applications will be accepted until the position is filled. The Department of Health and Human Services and NIH are equal opportunity employers committed to equity, diversity and inclusion.

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