- Comp-neuro - lists.cnsorg.org

Survey regarding large-scale neuroimaging datasets
by Eline Kupers 09 Apr '24

09 Apr '24

Dear all, In recent years, we have seen an increase in the usage, acquisition, and open sharing of rich, large-scale neuroimaging datasets. This is an exciting development in human neuroscience and suggests that we are entering a new era of big open data. To understand users' experiences with current large-scale datasets as well as needs for future datasets, we invite you to this anonymous survey. The survey is anonymous to ensure that we get honest opinions. We welcome participation from all researchers regardless of their experience and/or background. You can find the survey here: https://umn.qualtrics.com/jfe/form/SV_6fAxIDk3pYdwC6W This survey will take approximately 10-15 minutes to complete and closes on *May 15, 2024*. Eline Kupers & Kendrick Kay

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Ph.D. Positions in Computational Neuroscience in Padova
by Samir Suweis 09 Apr '24

09 Apr '24

Dear colleagues, I would like to share with you the opening of the official call for the PhD program in Neuroscience hosted at the "Padova Neuroscience Center". This is a unique opportunity for young researchers to join a vibrant, active and interdisciplinary community of international faculty and to perform cutting-edge research in Neuroscience. The call offers 10 fully funded PhD positions with more than 45 research lines in diverse neuroscience fields, like Circuits & Systems, Cognitive, Affective, Behavioral, Computational Neuroscience, Neuroimaging, Translational and Clinical Neuroscience. This is is an incredible opportunity for aspiring neuroscientists to dive into a dynamic and multidisciplinary field, collaborating with more than 35 distinguished faculty members from 7 academic departments. Program Highlights: Deadline for Applications: 13th May 2024, 1 pm CET Interviews Scheduled: 28th May - 20th June 2024 Research Areas: The program covers five main lines: Multimodal Neuroimaging Methods Circuit and Systemic Neuroscience Cognitive, Affective, and Behavioral Neuroscience Translational and Clinical Neuroscience Computational Neuroscience Facilities and Support: Gain access to our in-house preclinical, PET, MRI, and EEG facilities. Benefit from superb computing, administrative, and technical supports. Duration: A comprehensive 3-year program. The University of Padova is not just a hub of academic excellence but also lies in the heart of a vibrant city known for its history, culture, and lively university atmosphere. Padova offers a unique blend of ancient heritage and modern innovation, making it an ideal place for both study and exploration. Don't miss this chance to step into the world of neuroscience research in one of Italy's most historic and dynamic university cities. We encourage all interested candidates to apply before the deadline and join us in this exciting journey of discovery and learning. For more details and application procedures, please visit our website https://pnc.unipd.it/admission <https://pnc.unipd.it/admission>. Best regards, Samir Suweis ***************** Samir Suweis www.liphlab.com Tel: +39 049 827 71 74

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Postdoc vacancy DBS modelling
by Bernadette van Wijk 09 Apr '24

09 Apr '24

Dear (future) post-docs, Our vacancy for a post-doc position in Amsterdam on the biophysical modelling and optimisation of deep brain stimulation treatment for Parkinson’s disease is still open until April 15: https://workingat.vu.nl/vacancies/post-doc-position-amsterdam-1065164?utm_c… Deep brain stimulation (DBS) is an undeniable clinical success in the treatment of movement disorders such as Parkinson’s disease. Yet, DBS exhibits a large outcome variability in individual patients and patients might suffer from stimulation-induced side effects. The sophistication of DBS systems is far ahead of the present understanding and clinical exploitation of the available stimulation features offered by the technology. Finding the right frequency, amplitude, and pulse width settings for an individual patient can be a cumbersome process. Within our European research consortium (Amsterdam, Luxembourg, Uppsala, Berlin), we aim to optimize DBS treatment through biophysical and statistical modelling, with a strong focus on electrophysiology (local field potential recordings) in Amsterdam. We are looking for a postdoc who could contribute to one or more of the following research aims: 1) localizing spatial origins of LFP oscillations through inverse source modelling; 2) biophysical modelling of the effect of stimulation on electrophysiological activity; 3) applying optimization algorithms for optimal navigation through the stimulation parameter landscape. You are expected to take initiative in conducting the work and to present the project’s outcomes in scientific papers and at international conferences. There is an opportunity to supervise student projects, participate in data collection, and to take part in working visits to partners in the consortium. The work in this project will be conducted in close collaboration with the DBS Neurology group at the Amsterdam University Medical Centers location AMC. You are expected to regularly visit the AMC hospital for attending research meetings and to conduct parts of your work, as appropriate. The project will be supervised by Dr. Bernadette van Wijk (VU University Amsterdam) and Dr. Martijn Beudel (Amsterdam University Medical Centers). Please consider applying if you’re interested. Kind regards, Dr. Bernadette van Wijk Department of Human Movement Sciences Vrije Universiteit Amsterdam The Netherlands

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NEST Conference 2024 - reminder for abstract submission deadline on 15 April 2024
by Hans Ekkehard Plesser 09 Apr '24

09 Apr '24

Dear all, The abstract submission deadline for the virtual NEST Conference 2024 is approaching (15 April 2024). We are looking forward to your contributions! The NEST Conference provides an opportunity for the NEST Community to meet, exchange success stories, swap advice, learn about current developments in and around NEST spiking network simulation and its application. This year's conference will again take place as a virtual conference on Monday/Tuesday 17/18 June 2024. We are inviting contributions to the conference, including talks, "posters" and workshops on specific topics. Important dates 15 April 2024 - Deadline for submission of contributions 26 April 2024 - Deadline for NEST Initiative membership applications eligible for fee reduction 08 May 2024 - Notification of acceptance 07 June 2024 - Registration deadline 17 June 2024 - NEST Conference 2024 starts For more information on how to submit your contribution, register and participate, please visit the conference website https://nest-simulator.org/conference We are looking forward to seeing you all in June! Hans Ekkehard Plesser and the conference organizing committee -- Prof. Dr. Hans Ekkehard Plesser Department of Data Science Faculty of Science and Technology Norwegian University of Life Sciences PO Box 5003, 1432 Aas, Norway Phone +47 6723 1560 Email hans.ekkehard.plesser(a)nmbu.no<mailto:hans.ekkehard.plesser@nmbu.no> Home http://arken.nmbu.no/~plesser

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Postdoc positions in Cognitive Neuroscience, Computational Psychiatry and Developmental Psychology, University of Tuebingen, Germany
by Susan Fischer 09 Apr '24

09 Apr '24

**Apologies for cross-posting** Dear colleagues, The "Developmental Computational Psychiatry" lab and the W3 professorship "Computational Psychiatry" led by Tobias Hauser at the University of Tübingen (Germany) is currently hiring new postdocs. The focus of the lab is to better understand the computational and neural mechanisms underlying decision making and learning, and how these processes go awry in patients with mental illnesses. The successful candidates will have the chance to work in a highly dynamic and inspiring environment and to collaborate closely with Prof Peter Dayan and the Max-Planck Institute for Biological Cybernetics. Concretely, we are looking for the following candidates: * Postdoc with developmental psychology background * Postdoc with experimental & neuroimaging (MEG / MRI) background More information about the positions can be found here: https://devcompsy.org/join-the-lab/ Interested candidates are encouraged to reach out to Tobias Hauser directly to informally discuss the positions. Best regards, Susan. ************************************************ Susan Fischer Coordinator Alexander von Humboldt Professorship Prof Peter Dayan & W3-Professorship ‘Computational Psychiatry’, Prof Tobias Hauser Max Planck Institute for Biological Cybernetics & Eberhard Karls Universität Tübingen & Universitätsklinik für Psychiatrie und Psychotherapie AI Research Building R 20-7/A21 Maria-von-Linden-Str. 6 72076 Tübingen Germany ************************************************

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Online workshop: Dendritic computation, synaptic plasticity & molecular mechanisms
by O'Donnell, Cian 08 Apr '24

08 Apr '24

Please join us for our free, online and global workshop on 22/23/25 April 2024 on: Dendritic computation, synaptic plasticity & molecular mechanisms One of the workshop goals is to try to bring together computational and experimental researchers working on molecular mechanisms of neurons. Each session is in a different time window to help reach people in different parts of planet earth: 9-13h CET Monday 22nd April 15-19h CET Tuesday 23rd April 17-21h CET Thursday 25th April Schedule, speaker list, and registration link at: http://tchumatchenko.de/Workshop/workshop_homePage.html Current speakers * Haruhiko Bito, University of Tokyo, Japan * Brenda Bloodgood, University of California San Diego, USA * Spiros Chavlis, IMBB-FORTH, Greece * Julijana Gjorgjieva, Technical University of Munich, Germany * Seth Grant, University of Edinburgh, United Kingdom * Anne-Sophie Hafner, Donders Centre for Neuroscience, Netherlands * Sybille Krauss, Naturwissenschaftlich-Technische Fakultät Universität Siegen, Germany * Boaz Mohar, HHMI's Janelia Research Campus, USA * Cian O'Donnell, Ulster University, United Kingdom * Thomas Oertner, Center for Molecular Neurobiology Hamburg Germany * Silvio Rizzoli, Universitätsmedizin Göttingen, Germany * Erin M. Schumann, MPI for Brain Research Frankfurt, Germany * Walter Senn, University of Bern, Switzerland * Jason Shepherd, University of Utah, USA * Tatjana Tchumatchenko, University Clinic Bonn, Germany * Noam Ziv, Technion-Israel Institute of Technology, Israel Short talks by * Cornelius Bergmann, University Clinic Bonn, Germany * Edita Bulovaite, University of Edinburgh, United Kingdom * Arno Granier, University of Bern, Switzerland * Sofia Raak, University of Bristol, United Kingdom * Annika Reisbitzer, Naturwissenschaftlich-Technische Fakultät Universität Siegen, Germany Best, Tatjana Tchumatchenko & Cian O’Donnell This email and any attachments are confidential and intended solely for the use of the addressee and may contain information which is covered by legal, professional or other privilege. If you have received this email in error please notify the system manager at postmaster(a)ulster.ac.uk and delete this email immediately. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Ulster University. The University's computer systems may be monitored and communications carried out on them may be recorded to secure the effective operation of the system and for other lawful purposes. Ulster University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of a separate attachment, the text of email is not intended to form a binding contract. Correspondence to and from the University may be subject to requests for disclosure by 3rd parties under relevant legislation. The Ulster University was founded by Royal Charter in 1984 and is registered with company number RC000726 and VAT registered number GB672390524.The primary contact address for Ulster University in Northern Ireland is Cromore Road, Coleraine, Co. Londonderry BT52 1SA

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CFP: Workshops in conjunction with FRCCS 2024, Montpellier, France May 28, 2024
by Hocine Cherifi 08 Apr '24

08 Apr '24

We encourage researchers to participate in the FRCCS 2024 <https://iutdijon.u-bourgogne.fr/ccs-france/> workshops to share their insights and foster interdisciplinary collaborations in the study of complex systems. *Workshops* · Modeling Cities and Regions as Complex and Evolving Systems · Beauty in Complexity · Network Sparsification & beyond *Important dates* Submission Deadline: *April 14, 2024* Final Decisions Released:* April 17, 2024* Camera-Ready Deadline: *April 30, 2024* *1) **Modeling Cities and Regions as Complex and Evolving Systems* <https://iutdijon.u-bourgogne.fr/ccs-france/workshop-on-modeling-cities-and-…> Cities consist of interacting entities, such as people and infrastructure, and exhibit emergent properties, which appear additionally to the sum of the isolated properties. This makes cities a prime example of complex systems. Accordingly, complexity theories and methods are particularly relevant to their study. By focusing on the commonalities that underpin urban systems, the workshop seeks to foster interdisciplinary dialogue and explore novel approaches to studying cities as complex entities. *More info at: * *https://iutdijon.u-bourgogne.fr/ccs-france/workshop-on-modeling-cities-and-regions-as-complex-and-evolving-systems/* <https://iutdijon.u-bourgogne.fr/ccs-france/workshop-on-modeling-cities-and-…> *Workshop chair* *Daniela Cialfi - NRCouncil of Italy - **danielacialfi(a)gmail.com* <danielacialfi(a)gmail.com> *2) **Beauty in Complexity* <https://iutdijon.u-bourgogne.fr/ccs-france/beauty-in-complexity/> The Beauty in Complexity exhibition invites researchers to share the visual wonders of their work with a wide and diverse audience. Whether it's a photograph, diagram, visualization, or montage, we encourage submissions that evoke curiosity and wonder. We seek captivating visuals showcasing the beauty found within complex systems research. More info at: https://iutdijon.u-bourgogne.fr/ccs-france/beauty-in-complexity/ *Workshop chairs* Benjamin Renoust - *Median Technologies,- **renoust@gmail* <benjamin.renoust(a)mediantechnologies.com> *.com *Arnaud Sallaberry - *LIRMM *- *arnaud.sallaberry(a)lirmm.fr* <arnaud.sallaberry(a)lirmm.fr> *3) **Network Sparsification & beyond* <https://iutdijon.u-bourgogne.fr/ccs-france/complex-network-sparsification/> Numerous algorithms are designed to construct simpler or smaller network representations to address scalability and performance issues. This workshop aims to bring together researchers working on the broad theme of network simplification and discuss graph reduction methods and their applications. More info at: https://iutdijon.u-bourgogne.fr/ccs-france/complex-network-sparsification/ *Workshop chairs* Hamida Seba -* University Lyon 1- **Hamida.seba(a)univ-lyon1.fr* <Hamida.seba(a)univ-lyon1.fr> Hocine Cherifi* - University of Burgundy - **hocine.cherifi(a)u-bourgogne.fr* <hocine.cherifi(a)u-bourgogne.fr> Join us at COMPLEX NETWORKS 2024 <https://www.complexnetworks.org/> *-------------------------* Hocine CHERIFI University of Burgundy Franche-Comté Laboratoire* I*nterdisciplinaire *C*arnot de *B*ourgogne - ICB UMR 6303 CNRS Editor in Chief Plos Complex Systems <https://plos.org/complex-systems-research-journal/#:~:text=PLOS%20Complex%2….> Founding & Adisory Editor Applied Network Science <https://appliednetsci.springeropen.com/> Editorial Board member PLOS One <https://journals.plos.org/plosone/>, IEEE ACCESS <https://ieeeaccess.ieee.org/?http%3A%2F%2Fieeeaccess_ieee_org%2F>, Scientific Reports <https://www.nature.com/srep/>, Journal of Imaging <https://www.mdpi.com/journal/jimaging>, Quality and Quantity <https://www.springer.com/journal/11135/>, Computational Social Networks <https://computationalsocialnetworks.springeropen.com/>, Complex Systems <https://www.complex-systems.com/>

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PhD funded application
by Eirini Mavritsaki 08 Apr '24

08 Apr '24

Dear all, I would like to advertise the below PhD funded application. Please feel free to email me if you have any questions. Thank you in advance for any help. Best wishes, Eirini Project 1: Using machine learning, AI and computational modelling to predict recovery from stroke from brain-scans across a range of language and cognitive deficits. This funding model includes a 36 month fully funded PhD Studentship, in-line with the Research Council values, which comprises a tax-free stipend paid monthly (2024/5 - £19,237) per year and a Full Time Fee Scholarship for up to 3 years, subject to you making satisfactory progression within your PhD. All applicants will receive the same stipend irrespective of fee status. Application Closing Date: 23:59 on Tuesday 30th April 2024 for a start date of the 2nd September 2024. How to Apply To apply, please complete the project proposal form,<https://www.bcu.ac.uk/Download/Asset/d3f86737-6b53-ec11-981f-501ac52d968f> <https://www.bcu.ac.uk/Download/Asset/d3f86737-6b53-ec11-981f-501ac52d968f>ensuring that you quote the project reference, and then complete the online application<https://www.bcu.ac.uk/courses/social-sciences-research-degrees-2024-25> where you will be required to upload your proposal in place of a personal statement as a pdf document. You will also be required to upload two references, at least one being an academic reference, and your qualification/s of entry (Bachelor/Masters certificate/s and transcript/s). Project Title: Using machine learning, AI and computational modelling to predict recovery from stroke from brain-scans across a range of language and cognitive deficits. Project Lead: Professor Eirini Mavritsaki Eirini.Mavritsaki(a)bcu.ac.uk<mailto:Eirini.Mavritsaki@bcu.ac.uk> Reference: PreSReB Project Description Stroke can be caused when blood flow to the brain is interrupted, this can take place either by blockage or through a traumatic event. Several cognitive deficits can be caused by stroke ranging from paralysis or weakness on one side of the body to problems with memory, attention, vision, thinking, emotional changes and language problems. For the best possible recovery from stroke, the correct rehabilitation is vital. However, predicting the best treatment and outcomes is challenging since every patient is different, and each case of stroke is unique. Machine learning has been previously used, but it is difficult to interpret the outcomes due to complex interactions of the large data used. To overcome these challenges, we are planning to combine machine learning with AI and computational modelling. To achieve the best outcomes, we are collaborating with University of Birmingham and UCL and we have access to the Predicting Language Outcome and Recovery After Stroke (PLORAS) database with over 2000 stroke patients. Anticipated Findings and Contribution to Knowledge This research work aims to contribute towards the development of new approaches for predicting stroke recovery. This will not only advance research in this area, but it will also lead to development of new tools that clinicians can use to predict outcomes for rehabilitation approaches. In addition, this work will make significant contributions towards the advancement of research in computational neuroscience. By combining machine learning, AI and computational modelling, it will help improve our understanding of this complex field. More information on the project can be found using the link below https://www.bcu.ac.uk/research/our-phds/phd-opportunities/using-machine-lea… and the application and process https://www.bcu.ac.uk/research/our-phds/phd-opportunities Please note that I think your work-life balance and your right to disconnect from your work or studies is very important. Therefore, if this message arrives in an evening or on a weekend, I really would not expect you to attend to it. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Prof. Eirini Mavritsaki, Ph.D., CPsychol Professor in Cognitive Psychology Faculty Research Strategy Deputy and Research Development Framework Lead eirini.mavritsaki(a)bcu.ac.uk<mailto:eirini.mavritsaki@bcu.ac.uk> 0121 331 6361 Faculty of Business Law and Social Sciences Birmingham City University ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Disclaimer This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you have received this email in error, please notify the sender immediately, delete this email from your system and do not use, copy, or disclose the information contained in this message or in any attachment. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Birmingham City University. Birmingham City University accepts no liability for any loss or damage caused by any virus transmitted by this email and the recipient must ensure that the email (and attachments) is virus free.

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Deadline approaching - Brains for Brains Young Researcher Award
by Alexander Lammers 08 Apr '24

08 Apr '24

International early career scientists who have shown their outstanding potential at a very early career stage are invited to apply for the Brains for Brains Award. You can win a 2000 € travel grant to join the Bernstein Conference 2024 and visit labs of Bernstein members. ____ Who can apply? International students of all nationalities from relevant disciplines (biology, medicine, physics, mathematics, computer science, engineering, psychology, etc.) who plan to pursue a research career in computational neuroscience and who have at least one peer reviewed publication (as co-author) or peer reviewed conference abstract (as first author). ____ The award is endowed with: * a travel grant of 2.000 € for a one-week trip to Germany, including free participation at the Bernstein Conference 2024 in Frankfurt * the chance to present your research as a talk and as a poster at the Bernstein Conference 2024 * individually planned visits to labs of the Bernstein Network Computational Neuroscience ____ Application deadline: April 21, 2024, 23:59 CEST ____ Details & application https://bernstein-network.de/en/network/awards-and-initiatives/brains-for-b… ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Jülich GmbH 52425 Jülich Sitz der Gesellschaft: Jülich Eingetragen im Handelsregister des Amtsgerichts Düren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Stefan Müller Geschäftsführung: Prof. Dr. Astrid Lambrecht (Vorsitzende), Karsten Beneke (stellv. Vorsitzender), Dr. Ir. Pieter Jansens ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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TA applications now open for Simons Computational Neuroscience Imbizo, 12 January to 2 February 2025
by Spyridon Chavlis 08 Apr '24

08 Apr '24

Dear Colleagues, We are looking for teaching assistants for the Simons Computational Neuroscience Imbizo, a computational neuroscience summer school held in Cape Town, South Africa (https://imbizo.africa/). We are looking for post-doctoral or advanced PhD researchers to join our team as Teaching Assistants (TAs) for the Imbizo in January 2025. Please apply via the link: https://imbizo.africa/ta-application/. Before you apply, you should have the following documents/information ready: 1) A brief CV (2-4 pages is fine) 2) A short motivational statement about your scientific interests and background, why you would be a good fit, and your favourite topics for teaching tutorials and supervising student projects. 3) Contact details of one referee. *The application deadline is April 25, 2024 (20:00 UTC), and the reference letter submission deadline is April 29, 2024 (20:00 UTC).* Please notify your referee beforehand to meet the deadline. *About the Imbizo:* The school hosts 28-30 students for an amazing 22 days of lectures, tutorials, projects and forging new friendships. All this takes place on Noordhoek beach, between the mountain and the ocean. It's a spectacular location. * / Arrival day: Sunday 12 January 2025/ * / Imbizo dates: Monday 13 January to Saturday 1 February 2025/ * / Departure day: Sunday 2 February 2025/ The Imbizo is a special experience, with students being totally immersed in academic, social, touristic and cultural activities, and has resulted in student and TA groups from previous schools becoming very close, personally and scientifically. This is fantastic, as a major goal of the Imbizo project is to help young African researchers grow their academic peer and friend group. About being a TA: * Each TA runs one afternoon tutorial in the first week of the school, which they design themselves. * Each TA will teach a different topic, which the TA's choose among themselves, to provide students with a broad exposure to problems and methods in computational neuroscience. * Each TA is also assigned 5 students to supervise for project work during the last 2 weeks of the school. * TAs will be asked to help process student applications. TAs are integral in helping run the school. In addition to academic support, they foster good social interactions and academic discussions among students, and they help 'shy' students meet faculty. They also act as 'social glue’, helping to notice and support students who may be feeling ill, not fitting in socially, or generally having difficulties. To fulfill these roles, TAs need to be at all school meals and activities. We will also need a little help processing student applications. *What we provide:* We cover as direct as possible, economy class tickets to Cape Town, as well as all board and lodging during the school. *We will start assessing applications on May 1, 2024.* A call for student applications will follow soon. We hope to hear from you soon! Let us know if you have any questions. Thanks and regards Demba Ba, Arif Hamid, Peter E Latham, Spiros Chavlis, and Emma Vaughan Simons Computational Neuroscience Imbizo Committee 2025 Twitter: @CompNeuroImbizo email: isicn.imbizo[AT]gmail.com -- *Spyridon Chavlis, PhD* Postdoctoral Researcher and Systems Administrator Poirazi Lab Institute of Molecular Biology and Biotechnology (IMBB) Foundation for Research and Technology-Hellas (FORTH) Nikolaou Plastira, 100 GR 70013 Heraklion, Crete, Greece Tel: (+30) 2810 39 1264 Εmail: schavlis(a)imbb.forth.gr Webpage: dendrites.gr <https://www.dendrites.gr>

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