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High Performance Computing Workshop at SFN 2016
by Ted Carnevale Oct. 13, 2016

Oct. 13, 2016

A few seats remain available in the workshop Using the Neuroscience Gateway Portal (NSG) for Parallel Simulations Saturday, Nov. 12 from 9 AM to noon which we are presenting in downtown San Diego as a satellite to this year's SFN meeting. This workshop will show you how to use this NSF-supported resource in your computationally-intensive modeling and data analysis projects. It will also feature presentations from several research teams about how they are using NSG in their own research. The registration fee is $25, but if you have already signed up for the NEURON course on Friday, Nov. 11, you may register for the NSG workshop for only $15. For a description of the workshop and its application form, see http://www.neuron.yale.edu/neuron/static/courses/nsg2016/nsg2016.html The registration deadline is Friday Oct. 28. --Ted

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Postdoctoral researcher to study cause-effect power of neural systems across spatiotemporal scale
by Hill Sean Oct. 13, 2016

Oct. 13, 2016

Postdoctoral position in the Laboratory for the Neural Basis of Brain States Prof. Sean Hill, École Polytechnique Fédérale de Lausanne (EPFL) Campus Biotech, Geneva, Switzerland The Laboratory for the Neural Basis of Brain States (LNBBS), part of the Blue Brain Project, focuses on understanding cortical and thalamocortical structure and function and the relationship to states of the brain including wakefulness, sleep and anesthesia. LNBBS is part of the EPFL Blue Brain Project (BBP), a Swiss national brain initiative situated on the Campus Biotech in Geneva, Switzerland, applies advanced neuroinformatics, data analytics, high-performance computing infrastructure and simulation-based approaches to the challenge of understanding the structure and function of the mammalian brain in health and disease. A postdoctoral position is available in the laboratory of Prof. Sean Hill (EPFL, http://www.hill-lab.org : http://bluebrain.epfl.ch) in collaboration with the Prof. Giulio Tononi (Wisconsin Institute for Sleep and Consciousness, www.integratedinformationtheory.org ) to study cause-effect power of neural systems across spatiotemporal scales. Immediate funding is available for a project using the framework of integrated information theory [1] to study foundational questions regarding causation and emergence in a detailed model of a cortical column [2]. The model is a comprehensive, multi-scale digital reconstruction of rat somatosensory microcircuitry, consisting of over 31,000 biophysically detailed multi-compartment neurons with 55 layer-specific morphological and 207 morpho-electrical neuron subtypes. Causal properties are explored at micro scales and at multiple macro scales by black-boxing the model in various ways and applying measures of integrated information to the resulting macro level systems [1, 3]. Candidates are expected to have strong training in a discipline such as theoretical biology/neuroscience, physics, mathematics, computer science, or engineering. Experience in information theory, complex systems, and neural modelling software (e.g. Neuron, NEST) are a plus. Programming experience is required (knowledge of MATLAB, Python, and/or C++ is of advantage). Appointments are for an initial 1-year renewable contract, starting as soon as possible or until the position is filled. Candidates should send a CV, brief statement of previous research and future research interests, and email addresses and phone numbers of three references to: Sean Hill, (sean.hill(a)epfl.ch) For more information, contact Sean Hill (sean.hill(a)epfl.ch) or Giulio Tononi (gtononi(a)wisc.edu) [1] Tononi G, Boly M, Massimini M, and Koch C. Integrated information theory: from consciousness to its physical substrate. Nature Reviews Neuroscience (2016). [2] Markram et al. Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 2015 Oct 8;163(2):456-92. doi: 10.1016/j.cell.2015.09.029. [3] Marshall W, Albantakis L, Tononi G (2016) Black-boxing and cause-effect power. arXiv:1608.03461 [q-bio.NC]

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Two NIH BRAIN Initiative funded computational postdoctoral positions available: Brown University and Mass. General Hospital
by Stephanie Jones Oct. 12, 2016

Oct. 12, 2016

Hello, Can you please post the following ad to the compneuro mailing list? Thank you, Stephanie Two NIH BRAIN Initiative funded computational postdoctoral positions available: Brown University and Mass. General Hospital The field of neuroscience is experiencing unprecedented growth in the ability to record from and manipulate brain circuits in humans and in animal models. MEG/ EEG are the leading methods to non-invasively record human neural dynamics with millisecond temporal resolution. However, it is still extremely difficult to interpret the underlying cellular and circuit level generators of these ‘macro-scale’ signals without simultaneous invasive recordings. Supported by a BRAIN Initiative grant through NIH we have started a collaborative project between Brown University, Yale University and Massachusetts General Hospital (MGH) to develop and a new software tool for circuit level interpretation of human brain activity measured with MEG/EEG. We are hiring two post-docs to join our team. A three-year postdoctoral position at Brown University PI: Dr. Stephanie Jones contact: Stephanie_Jones(a)brown.edu A three-year postdoctoral position at Massachusetts General Hospital PI: Dr. Matti Hämäläinen contact: msh(a)nmr.mgh.harvard.edu The post-docs hired will work among a team of researcher at Brown University, MGH, and Yale University on the design and implementation of a user-friendly, GUI-driven, open-source model of neocortical circuitry for the interpretation of non-invasively measured human brain activity. The neural model will be integrated into existing source localization software (MNE-Python) so that researchers can study the location, time course, and neural mechanisms of their human brain imaging data all in one package. Additionally, the post-docs will work with several test case groups to apply the model in a variety of tasks and clinical conditions. Interested candidates must have experience in Python programming and software engineering. The postdoc at Brown will work more on the computational modeling aspect of the software while the post doc at MGH will concentrate on the integration of MEG/EEG source modeling with computational neural modeling. Candidates with knowledge in computational modeling using NEURON and/or source localization methods will be given preference. Please send a CV, statement of research interests, and three letters of recommendation to contact addresses listed above. ******************************************* Stephanie R. Jones, PhD Associate Research Professor Brown University Department of Neuroscience Stephanie_Jones(a)Brown.edu https://www.brown.edu/research/labs/jones/

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PhD Position in Computational Cognitive Neuroscience at FIU in Miami
by Fabián Soto Oct. 11, 2016

Oct. 11, 2016

The Computational Cognitive Neuroscience Lab at FIU in Miami (PI Dr. Fabian Soto) is looking for a doctoral student to start in the Fall of 2017. The student will work in the development of new methods to test independent processing of stimulus dimensions in the brain, within a framework that combines general recognition theory (a multidimensional version of signal detection theory) and population encoding models. The developed methods will be applied to the analysis of EEG and fMRI studies on object categorization. Our lab's research focuses on understanding the interplay between learning and visual processes in object categorization. We use a combination of behavioral, computational, and brain imaging techniques. FIU is classified as an R1 (highest research activity) institution by the Carnegie Foundation. It is Florida’s fastest growing public research university, the fourth largest university in the US, and one of the nation’s largest hispanic-serving institutions. FIU has recently established a state-of-the-art neuroimaging center (the Cognitive Neuroscience and Imaging Center), which hosts a research-dedicated 3T Siemens MAGNETOM Prisma MRI scanner and a fully equipped mock scanner for pre-scan and movement training. If you know of any potentially interested candidates with a broad scientific background who are interested in neuroimaging, psychology, and computational modeling, please have them contact Dr. Fabian Soto at fabian.soto(a)fiu.edu. More information about FIU’s Cognitive Neuroscience doctoral program in Psychology is available at http://cn.fiu.edu. The deadline for application is December 1st of 2016. -- Fabian A. Soto Assistant Professor Department of Psychology Florida International University Modesto A. Maidique Campus 11200 SW 8th St, AHC4 460 Miami, FL 33199 Phone: 305-348-8423 Fax: 305-348-6670 Email: fabian.soto(a)fiu.edu

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Postdoc in Warsaw - kernel-based method of electrophysiological source imaging
by Daniel Wójcik Oct. 10, 2016

Oct. 10, 2016

https://neuroinflab.wordpress.com/jobs/ POSTDOCTORAL POSITION IN COMPUTATIONAL NEUROSCIENCE: kESI – kernel-based method of electrophysiological source imaging The Neuroinformatics Laboratory (https://neuroinflab.wordpress.com/) at the Nencki Institute of Experimental Biology (http://www.nencki.gov.pl) invites applications for a postdoctoral position (36 months). The goal of the project is to develop, implement and investigate a new technique of source localization of specific events in neural activity, such as a seizure, from multimodal imaging data, including ECoG (strip and grid electrodes), depth electrophysiological recordings, and MRI data from humans. The method will be validated with ground truth model data and tested on clinical data obtained from epilepsy patients. The fellow will build on already existing tools and techniques developed in the lab, see especially Potworowski et al. 2012 and Ness et al. 2015. The ideal candidate will have a strong computational background, experience in numerical solutions of PDEs, electrodynamics, computational neuroscience, or brain imaging. We can only accept candidates 0 to 7 years after reception of PhD. To apply or ask for further information send email to d.wojcik(a)nencki.gov.pl. Applications should include a CV, statement of research interests, and the names and full contact details of three referees. We are accepting applications until the position is filled. -- Prof. Daniel K. Wojcik Laboratory of Neuroinformatics, Head PhD Studies, Head Nencki Institute of Experimental Biology 3 Pasteur St, 02-093 Warsaw, Poland tel: (+48 22) 5892348 fax: (+48 22) 8225342 skype: danek8317 http://dwojcik.pl/ http://neuroinflab.wordpress.com/ http://orcid.org/0000-0003-0812-9872

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RAHA 2016 - Invitation and late Breaking Poster Session
by Dr. Shyam Diwakar Oct. 8, 2016

Oct. 8, 2016

Dear Colleagues, Apologies for cross-posting. Amrita University, India at its backwater-nestled campus in Kollam, Kerala is set for RAHA 2016 - International Conference on Robotics and automation for Humanitarian Applications to be held from December 18-20, 2016. The organizers are calling in for late-breaking posters in robotics, neurorobotics, societal and humanitarian applications and related topics. We welcome you to submit content and showcase new studies in the fields of robotics and related topics. RAHA 2016 brings together top researchers, practitioners, and experts from the field of robotics for humanitarian applications. The conference will host 6 plenary and 16 keynote speakers from top universities and industry. Poster session Details: http://raha2016.org/call-for-abstracts-late-breaking-posters Conference website: http://raha2016.org Speakers: http://raha2016.org/speakers I look forward to meeting you in December. Shyam -- Shyam Diwakar, Ph.D. Amrita University http://www.amrita.edu/compneuro Disclaimer : The information transmitted in this email, including attachments, is intended only for the person(s) or entity to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. Any views expressed in any message are those of the individual sender and may not necessarily reflect the views of Amrita University. If you received this in error, please contact the sender and destroy any copies of this information.

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Please post to the comp-neuro list
by McCormick, David Oct. 7, 2016

Oct. 7, 2016

POSTDOCTORAL POSITIONS in Theoretical and Computational Neuroscience The Swartz Center in Theoretical Neurobiology at Yale University invites applications for two postdoctoral positions in Theoretical and Computational Neuroscience. We seek exceptional candidates with experience in computational and/or quantitative neuroscience to collaborate with computational/experimental biologists towards the understanding of the nervous system from the level of synapses to complex networks. The candidate may work in one or more laboratories of Jessica Cardin, Damon Clark, Michael Crair, George Dragoi, Thierry Emonet, Michael Higley, Joe Howard, Alex Kwan, Daeyeol Lee, David McCormick, John Murray, and Steven Zucker (see http://swartz-initiative.medicine.yale.edu<http://swartz-initiative.medicine.yale.edu/>). Candidates must hold a Ph.D. or equivalent degree. Please send a Curriculum Vitae, selected reprints, and a statement of research plans including the laboratories of interest. All application materials should be sent electronically to the following e-mail address: david.mccormick(a)yale.edu<mailto:david.mccormick@yale.edu>. Applications will be reviewed as they are received, with a target date of November 30th, 2016. Positions are available starting January 2017. Yale University is an affirmative action/equal opportunity employer. Yale values diversity in its faculty, students, and staff and especially welcomes applications from women and underrepresented minorities. ----------------------------------------------------------- Thanks! David A. McCormick Professor, Neuroscience | Yale University School of Medicine Dept. Neuroscience 333 Cedar Street | New Haven, CT 06510 | 203.785.5981 www.mccormicklab.org<http://www.mccormicklab.org/> | www.neurobiology.org<http://www.neurobiology.org/>

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"Closed Loop Neuroscience" book release
by ahmed el hady Oct. 7, 2016

Oct. 7, 2016

Dear All, I would like to share with you the exciting news that my edited volume "Closed Loop Neuroscience", has just been published by Academic Press. The following is the link for the book: http://store.elsevier.com/Closed-Loop-Neuroscience/Ahmed-El-Hady/isbn-97801… . This reference book gathers work from across neuroscience, which employs closed loop methodologies, under the umbrella of what can be called “Closed Loop Neuroscience”. The book is built on three axes: theoretical, experimental and philosophical. The contributors come from a myriad of disciplines from physics, mathematics, linguistics, neuroscience, philosophy, engineering and computer science. The following is the table of contents: Theoretical Axis 1. Adaptive Bayesian methods for closed-loop neurophysiology 2. Information geometric analysis of neurophysiological data 3. Control theory for closed loop neurophysiology 4. Testing the theory of practopoiesis using closed loops 5. Local field potential analysis for closed loop neuromodulation 6. Online event detection requirements in closed-loop neuroscience 7. Closing Dewey's Circuit 8. Stochastic optimal control of spike times in single neurons 9. Hybrid systems neuroscience 10. Computational Complexity and the Function-Structure-Environment Loop of the Brain 11. Subjective Physics 12. Contextual emergence in neuroscience Experimental Axis 13. Closed loop methodologies for cellular electrophysiology 14. Bidirectional Brain-Machine Interfaces 15. Adaptive brain stimulation for Parkinson’s disease 16. Closed loop neuroprosthetics 17. Closed Loop Limbic Neurostimulation 18. Conscious brain-to-brain communication Philosophical Axis 19. Philosophical aspects of closed loop neuroscience 20. Closed Loops in Neuroscience and Computation: What It Means and Why It Matters Your feedback is very important for me so please let me know if you have any comments about it. My email is ahady(a)princeton.edu. I would really appreciate if you recommend the book to your librarian, colleagues and anyone you think might benefit from it. I hope you will enjoy the book , All the best, Ahmed El Hady Dr. Ahmed El Hady Princeton Neuroscience Institute Howard Hughes Medical Institute Washington Road | Princeton, NJ 08544 Tel: +1-609-258-7954 Fax: +1-609-258-1028 Website: http://scholar.princeton.edu/ahmedelhady/home

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Open positions in Theoretical/Computational Neuroscience at the Max Planck Institute for Brain Research in Frankfurt
by Gjorgjieva, Julijana Oct. 7, 2016

Oct. 7, 2016

We invite applications for PhD positions and have openings for Master and Bachelor students interested in writing their thesis or doing internships in our group 'Computation in Neural Circuits' at the Max Planck Institute for Brain Research in Frankfurt, Germany. Postdoctoral candidates are also encouraged to inquire for open positions. We use mathematical and computational approaches to study how neurons and the connections between them get organized into circuits that are flexible to learn, yet remain robust to external perturbations. We focus on the emergence of complex properties at the single neuron and circuit level during early development. For example, we study how synaptic plasticity, homeostasis and development of ion channel expression interact to produce functional adult circuits. We are also interested in how these specific properties emerge evolutionarily, shaped by various biophysical constraints. Our work is supported by close experimental collaborations based on different animal models, from rodent to fruit fly, giving us access to individual circuit components. Successful applicants can work on a range of projects including theoretical model development and analytical calculations, numerical simulations, data analysis, and applications to novel datasets from collaborating labs. Applicants should have a strong quantitative background (in mathematics, physics, engineering, computer science, or related fields) and interest in interdisciplinary research. Background in neuroscience is desirable but not required, and some programming experience is necessary. To apply for these positions, please submit the following to comp.neural.circuits(a)gmail.com<mailto:comp.neural.circuits@gmail.com> 1. A curriculum vitae 2. A motivation letter or a description of research interests (please explain your scientific interests, what are you strengths when working on a problem, why our group) 3. Contact details for 2-3 referees 4. A written sample of scientific research, e.g. a manuscript, thesis, or code Our institute also hosts the IMPRS graduate school in 'Neural Circuits' which has an open call for PhD applications with a deadline of December 15, 2016: http://brain.mpg.de/graduate-studies/call.html For more information or informal inquiries, please get in touch! Julijana Gjorgjieva, PhD Group Leader Max Planck Institute for Brain Research Max-von-Laue-Str. 4 60438 Frankfurt/Main, Germany http://brain.mpg.de/research/computation-in-neural-circuits-group.html

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Symposia on Memory, March 6-10 2017, Barcelona
by Alex Roxin Oct. 6, 2016

Oct. 6, 2016

Dear all, I'm happy to announce that registration is open for the week-long series of Symposia on Memory at the Centre de Recerca Matemàtica from 6-10 of March, 2017 in Barcelona, Spain. These symposia bring together experimental and theoretical researchers in the neuroscience of memory to present and discuss work on topics such as: sleep, hippocampal function, the molecular basis of memory, synaptic plasticity, spatial learning, human memory, and more. The full list of invited speakers as well as a partial list of abstracts for the invited talks is on the website. A detailed schedule is forthcoming. As a registered participant you can submit an abstract for a contributed talk or a poster. For more information and to register see http://www.crm.cat/en/Activities/Curs_2016-2017/Pages/MATHMEM_Symposia.aspx The symposia are part of the Intensive Research Program (IRP) on the Mathematics of Memory at the Centre de Recerca Matemàtica in Bellaterra (Barcelona), Spain. The program kick-off is a week-long winter school on the mathematics of memory, the Memory School, from the 16th to the 20th of January, 2017. A preliminary course schedule is available on the website. As a registered participant at the school you can submit an abstract to present a poster. Registration is open! http://www.crm.cat/en/Activities/Curs_2016-2017/Pages/MATHMEM_School.aspx For more information on the IRP on Memory please visit the website below http://www.crm.cat/en/Activities/Curs_2016-2017/Pages/IRP-MATHMEM.aspx best regards, Alex (on behalf of the coordinators: Nicolas Brunel, Sandro Romani and Alex Roxin)

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