- Comp-neuro - lists.cnsorg.org

Okinawa/OIST Computational Neuroscience Course 2015: application deadline soon
by Erik De Schutter Feb. 2, 2015

Feb. 2, 2015

OKINAWA/OIST COMPUTATIONAL NEUROSCIENCE COURSE 2015 Methods, Neurons, Networks and Behaviors June 8 - June 25, 2015 Okinawa Institute of Science and Technology Graduate University, Japan https://groups.oist.jp/ocnc The aim of the Okinawa/OIST Computational Neuroscience Course is to provide opportunities for young researchers with theoretical backgrounds to learn the latest advances in neuroscience, and for those with experimental backgrounds to have hands-on experience in computational modeling. We invite graduate students and postgraduate researchers to participate in the course, held from June 8th through June 25th, 2015 at an oceanfront seminar house of the Okinawa Institute of Science and Technology Graduate University. Applications are through the course web page (https://groups.oist.jp/ocnc) only; they will close February 8th, 2015. Applicants will receive confirmation of acceptance in March. The course has a strong hands-on component based on student proposed modeling or data analysis projects, which are further refined with the help of a dedicated tutor. Applicants are required to propose their project at the time of application. Like in preceding years, OCNC will be a comprehensive three-week course covering single neurons, networks, and behaviors with ample time for student projects. The first week will focus exclusively on methods with hands-on tutorials during the afternoons, while the second and third weeks will have lectures by international experts. We invite those who are interested in integrating experimental and computational approaches at each level, as well as in bridging different levels of complexity. There is no tuition fee. The sponsor will provide lodging and meals during the course and may support travel for those without funding. We hope that this course will be a good opportunity for theoretical and experimental neuroscientists to meet each other and to explore the attractive nature and culture of Okinawa, the southernmost island prefecture of Japan. Invited faculty: • Gordon Arbuthnott (OIST) • Axel Borst (MPI, Münich, Germany) • Erik De Schutter (OIST) • Kenji Doya (OIST) • Eugene Izihikevich (Brain Corporation, USA) • Bernd Kuhn (OIST) • Peter Latham (Gatsby Unit, UCL, UK) • Miguel Nicolelis (Duke University, USA) • Steve Prescott (University of Toronto, Canada) • John Rinzel (New York University, USA) • Jackie Schiller (Technion, Israel) • Greg Stephens (OIST) • Jeff Wickens (OIST) • Taro Toyoizumi (RIKEN BSI, Japan) • Xiao-Jing Wang (New York University, USA) • Wako Yoshida (ATR, Japan)

1 0

European Spring School on Integrated Cognitive Systems (Herbert Jaeger)
by Herbert Jaeger Feb. 1, 2015

Feb. 1, 2015

Invitation to Participate: INTERDISCIPLINARY COLLEGE 2015 www.interdisciplinary-college.de An intense, decidedly interdisciplinary Spring School in Cognitive and Computational Neuroscience, Machine Learning, Psychology, AI and Philosophy. Guenne, Lake Moehne, Germany - March 6-13, 2015 Chairs: Herbert Jaeger, Ansgar Bueschges Fokus theme 2015: From Neuron to Person: Assembling Behavior and Cognition *The Interdisciplinary College* (IK) is an annual European one-week spring school, now in its 18th year. It offers a dense, rich, 4-track state-of-the-art course program in the wider sciences of intelligent/cognitive systems. The perspective and mission is decidedly interdisciplinary. The IK is also a unique social and networking event. Minds meet, music is played, and friends are made in long evening and night sessions in the welcoming conference site at Lake Moehne. Each IK is centered on a *focus theme*. In 2015 the focus is on integrated, complex cognitive systems. Research in the wider cognitive and neurosciences (including AI, machine learning and robotics) often deals with specific subsystems or functions, like "motor control", "object recognition", "working memory", etc. There are numerous reasons for this fragmentation: a divide-and-conquer strategy of isolating subsystems has been very successful in the sciences; commercially relevant applications mostly are centered on single functionalities; interdisciplinary research is not easy in practice. Defying these obstacles, the IK 2015 will cast its focus on complete, autonomous agents -- animals, humans, robots, and software characters. An offering of 25+ courses (each course 4-6 hours) is grouped under the following perspectives: - *Modeling cognitive architectures*: theoretical / mathematical / computational frameworks to analyse or design complete intelligent agents - *Person, Identity, Dignity*: philosophical / psychological / ethics perspectives on sentient beings - *Engineering Agents*: technological approaches to build robots and software agents - *Neurons, Muscles, Bodies*: "bottom-up" modeling of sensing and motor control in neurobiology, genetics and motor science - *Language and Thought*: "top-down" modeling of higher cognitive capacities in cognitive psychology and linguistics Please visit www.interdisciplinary-college.de for the detailed program, venue and registration and everything else, including the IK's 30-year-long history. Participants from outside Europe are of course most welcome too! ------------------------------------------------------------------ Dr. Herbert Jaeger Professor for Computational Science Jacobs University Bremen gGmbH Campus Ring 28759 Bremen, Germany Phone (+49) 421 200 3215 Fax (+49) 421 200 49 3215 email h.jaeger(a)jacobs-university.de http://minds.jacobs-university.de ------------------------------------------------------------------

1 0

Call for Applications: School on Neurotechnologies 2015 (March 23-27, 2015) at Padova, Italy.
by Mufti Mahmud Jan. 31, 2015

Jan. 31, 2015

Dear All, Sorry for the cross posting of this message. I am glad to communicate that the NeuroChip Laboratory of University of Padova, Padova, Italy is organizing a School on Neurotechniques with special emphasis on "Tools for Investigating the Function of Neural Circuits". The school will be held from March 23 – 27, 2015 and the deadline for application is February 20, 2015. The following topics will be covered in the school: 1. Multi-electrode and multi-transistor arrays 2. Implantable brain probes for acute and chronic recording 3. Calcium imaging 4. Voltage sensitive dye imaging 5. Optogenetics 6. Transcranic magnetic stimulation and EEG 7. Mixed electrophysiology, genetics and behavior approaches 8. Information theory and the analysis of neuronal population signals 9. Closed-loop electrophysiology and hybrid neuromorphic-neural systems Thank you for your attention. Best regards, Mufti Mahmud Call for participation ------------------------- School on Neurotechniques 2015: The toolbox for investigating the function of neural circuits 23-27 March 2015 NeuroChip Lab, University of Padova, Italy Website: http://www.vassanellilab.eu/school-neurotechniques/ OBJECTIVE Investigating information processing and identifying operational rules of brain neural circuits relies on the capability to selectively record and stimulate multiple neurons within a network. The toolbox of available techniques conceived to meet this need is rapidly expanding. The CSN School on Neurotechniques 2015 will offer an overview on advanced electrical- and light-based recording methods of neuronal excitability, focusing on those that are most relevant for the investigation of neural networks ‘in vitro’ and ‘in vivo’ and for application in neuroprosthetics. Techniques derived from information theory for the analysis of neuronal population signals will be presented and practical demonstrations of experimental recording sessions provided. The school targets doctoral students, post-doctoral researchers, scientists working in the related fields. Since the school's topics are interdisciplinary covering neurobiology, neuronal biophysics, microscopy, and electronics, preliminary knowledge in these fields is highly recommended. SPEAKERS Luca Berdondini, Italian Institute of Technology, Italy Paolo Del Giudice, National Institute of Health, Italy Stefano Ferraina, University of Rome ‘La Sapienza’, Italy Marta Giacomello, University of Padova, Italy Michele Giugliano, University of Antwerp, Belgium Bernd Kuhn, Okinawa Institute of Science & Technology, Japan Gabriele Losi, CNR Institute of Neuroscience, Padova, Italy Sergio Martinoia, University of Genova, Italy Marcello Massimini University of Milan , Italy Silvestro Micera, EPFL, Switzerland & SSSUP, Italy Ofer Yizhar, Weizmann Institute of Science, Israel Stefano Panzeri, Italian Institute of Technology, Italy Patrick Ruther, University of Freiburg, Germany Roland Thewes, University of Berlin, Germany Paul Verschure, Pompeu Fabra University, Spain Guenther Zeck, NMI at the University of Tuebingen, Germany Ralf Zeitler, MPI for Intelligent Systems, Germany REGISTRATION To apply, please register at ( http://www.vassanellilab.eu/school-neurotechniques/registration/) on or before February 20, 2015. If you have any further questions, please contact silviamaria.lattanzio(a)unipd.it or stefano.vassanelli(a)unipd.it The registration is FREE, however, the number of places are limited. The registration is sponsored by the European Commission, Project CSNII csnetwork.eu (GA No 601167, FP7, FET Proactive, Neuro-Bio-Inspired Systems). Travel and accommodation costs are not funded. LOCATION The school will be hosted by the NeuroChip Laboratory, Department of Biomedical Sciences, University of Padova, Via f. Marzolo 3, 35131 - Padova, Italy. The location is very close the city centre and is easily reachable from the railway or bus station of Padova. WHEN March 23-27, 2015. Target audience (N = ~25 active full-time): PhD students, postdoctoral researchers, scientists, members of associated EC CSNII consortia.

1 0

Workshop announcement at the EITN March 2-4 2015
by EITN Jan. 30, 2015

Jan. 30, 2015

More information and registration on the following website http://eitnconf-020315.sciencesconf.org/ *Due to a limited number of seats, the registration is free however mandatoty **March 2nd-4th 2015, EITN Paris 1^st community workshop HBP network simulator* *“Are we building the right thing? – Requirements from theory for simulation environments and neuromorphic computing”* http://www.eitn.org Organized by Andrew Davison, Jeff Muller, Jochen Eppler, David Lester, Abigail Morrison and Markus Diesmann in collaboration with the EITN.** ***Abstract* The HBP creates novel ICT infrastructure for the neuroscience community. Simulation engines in software and hardware for different levels of description are accessible through a unified collaboration portal (UP) providing version control and provenance tracking. The simulation engine for networks of abstract spiking neuron models called the network simulator provided by the software NEST particularly targets theoretical neuroscience and neurorobotics. This workshop presents the capabilities of the network simulator and the corresponding PyNN expressions as available at the end of the ramp-up phase of the HBP in March 2016. Neuromorphic hardware provided by the NM-PM1 (Heidelberg) and SpiNNaker (Manchester) systems enable the translation of a restricted set of software models to a platform with accelerated speed and reduced power consumption for high-throughput studies and interaction with the real world. With this background, the main part of the workshop is reserved for a discussion of the scientific challenges and plans of theoretical neuroscience to derive future requirements on the simulation engine. This will help developers to optimize the roadmap of the second phase of the HBP with the aim to maximize usefulness, uptake, and impact.

1 0

CFP: Special Session on Quantifying Embodiment, ECAL 2015
by Keyan Ghazi-Zahedi Jan. 30, 2015

Jan. 30, 2015

*** CALL FOR PAPERS *** 13th European Conference on Artificial Life (ECAL 2015) Special Session on Quantifying Embodiment Session paper submission deadline: 2 March 2015 Notification of acceptance of papers: 17 April 2015 Paper Camera-Ready-Copy deadline: 18 May 2015 Conference convenes: 20-24 July 2015, York, United Kingdom Conference website: http://ecal2015.alife.org <http://ecal2015.alife.org/> Special Session website: http://www.cs.york.ac.uk/nature/ecal2015/embodiment.html <http://www.cs.york.ac.uk/nature/ecal2015/embodiment.html> There is a growing acknowledgement in the artificial life and artificial intelligence community that embodiment is a key for the understanding of cognitive systems. Despite the consensus about the importance of embodiment, there is no clear definition of what the agent’s embodiment actually is. We believe that a quantitative approach can help to answer this open question. This is inspired by Einstein’s answer to the question ”What is time?”, to which he replied ”Time is what clocks measure”. Although this seems to be a trivial answer, it reveals that what we mean by time depends on the way we measure it. We are interested in quantifications of embodiment from various view points and different fields. A non-exclusive list of examples is: • Quantifications of the embodiment’s effect on sensing • Quantifications of the embodiment’s effect on cognitive processes • Quantifications of the embodiment’s effect on acting • Quantifications of brain-body-environment separation We are open to quantifications from any formal approach. Examples are information theory and dynamical systems, but others are highly welcome too. The ideal outcome of the special session would be a good overview of different concepts and quantifications of embodiment and an understanding how they overlap and differ, thereby leading to a better understanding and a clearer picture of what embodiment actually is. Papers are submitted via the ECAL paper submission form and published in the conference proceedings. Special Session Chairs: Keyan Ghazi-Zahedi, Christoph Salge, Georg Martius, Daniel Polani

1 0

New book: Analysis and modeling of multi-neuronal activity
by Tatsuno, Masami Jan. 29, 2015

Jan. 29, 2015

* Apologies if you receive multiple copies of this email * Dear Colleagues, Some of you might be interested in our recent book, Analysis and Modeling of Coordinated Multi-neuronal Activity (Springer Series in Computational Neuroscience, Vol. 12). The book covers - State-of-the-art introduction of multi-electrode recordings and how they contribute to the understanding of hippocampal memory - Overview of the modeling approach to hippocampal memory - Presentation of hippocampal local circuits and hippocampal-cortical interactions http://www.springer.com/biomed/neuroscience/book/978-1-4939-1968-0 http://www.amazon.com/Analysis-Coordinated-Multi-neuronal-Computational-Neu… Best regards, Masami Tatsuno (Editor) University of Lethbridge, AB, Canada ----- Table of Contents 1. Techniques for Large-Scale Multiunit Recording; H. Steenland and B. McNaughton 2. Silicon Probe Techniques for Large-Scale Multiunit Recording; H. Steenland and B. McNaughton 3. Overview of Neural Activity in the Awake and Sleeping Hippocampus; M. Eckert and M. Tatsuno 4. Associative Reactivation of Place-Reward Information in the Hippocampal-Ventral Striatal Circuitry; C. Lansink and C. Pennartz 5. Hippocampal Sequences and the Cognitive Map; A. Wikenheiser and D. Redish 6. Reorganization of Hippocampal Place- Selective Patterns During Goal-Directed Learning and Their Reactivation During Sleep; D. Dupret and J. Csicsvari 7. Causal Relationship Between SPWRs and Spatial Learning and Memory; G. Girardeau and M. Zugaro 8. Packets of Sequential Neural Activity in Sensory Cortex; A. Luczak 9. Coordinated Sequence Replays Between the Visual Cortex and Hippocampus; D. Haggerty and D. Ji 10. Memory Consolidation, Replay, and Cortico- Hippocampal Interactions; E. Holleman and F. Battaglia 11. Memory Reactivation in Humans; J. Farthouat and P. Peigneux 12. Models and Theoretical Frameworks for Hippocampal and Entorhinal Cortex Function in Memory and Navigation; N. Schultheiss, J. Hinman, and M. Hasselmo 13. Information Encoding and Reconstruction by Phase Coding of Spikes; Z. Nadasdy 14. Reinforcement Learning and Hippocampal Dynamics; A. Johnson and S. Venditto 15. Off-Line Replay and Hippocampal- Neocortical Interaction; S. Káli

1 0

postdoc in decision-making at Princeton
by Carlos Brody Jan. 29, 2015

Jan. 29, 2015

Postdoc in computational neuroscience of decision-making. My group <http://brodylab.org/> at Princeton University is looking for a talented computational postdoc to work on theory-driven modeling and data analysis of the neurophysiology of decision-making. We carry out both computational modeling (e.g., Brunton et al., Science 2013 <http://www.sciencemag.org/content/340/6128/95.full>) and experiments (e.g., Hanks, Kopec et al., Nature 2015 <http://www.nature.com/nature/journal/vaop/ncurrent/full/nature14066.html>), and this computational position will provide a powerful opportunity to influence and help direct experiments as they are conceived and develop. The data to be worked with will focus on simultaneous multi-neuron recordings, both electrophysiological and using two-photon cellular-resolution imaging (e.g., Scott et al., Neuron 2013 <http://www.sciencedirect.com/science/article/pii/S0896627313007125>), in decisions driven by accumulation of evidence. We are working towards single-trial, population-level understanding of the neural circuit mechanisms underlying decision-making. A background in quantitative sciences (e.g., machine learning, physics, math, computer science) is preferred and a strong interest in neuroscience is required. Please contact me directly at brody(a)princeton.edu <mailto:brody@princeton.edu> with a brief email describing your interests, your CV, and the names and contact info for two references. I look forward to hearing from you! Carlos Brody http://brodylab.princeton.edu <http://brodylab.princeton.edu/> ----------------------------------------------------------------------- Carlos Brody (609) 258-7645 brody(a)princeton.edu <mailto:brody@princeton.edu>Howard Hughes Medical Institute & Princeton University Princeton Neurosci. Inst. & Dept. of Molecular Biology 155 Princeton Neuro Inst, Washington Rd, Princeton NJ 08544 http://brodylab.princeton.edu <http://brodylab.princeton.edu/> -----------------------------------------------------------------------

1 0

Tangermann lab (Freiburg) -- PhD position in BCI
by Michael Tangermann Jan. 29, 2015

Jan. 29, 2015

Dear colleagues, I have an interesting open PhD position in my lab in Freiburg. Would you please circulate it in your labs and on email lists? Thanks a lot and snowy greetings from the Black Forrest, Michael --- snip --- PhD Position: Brain-Computer Interfaces in Cognitive Rehabilitation after Stroke BrainStateDecoding Lab of Dr. Michael Tangermann (Computer Science Dept.); payment level: TV-L E13 (65%); duration: 3/2015-2/2017 Brain-Computer Interface (BCI) systems make use of machine learning methods to cope with the challenges which appear during the decoding of individual brain signals in real-time. Within the BrainLinks-BrainTools cluster of excellence at the University of Freiburg (Germany), we evaluate whether BCI methods can be applied clinically outside of classical control paradigms. The PhD student will explore the use of BCI methods to support neurological rehabilitation training of speech and attention-related deficits after stroke. Scientific challenges comprise the development and investigation of brain signal analysis methods capable to describe rapid fluctuations of brain states and to assess the dynamics of network structures connecting brain areas. Working Areas (among others): * Theories (statistics, mathematics) and algorithms in the field of machine learning, with special emphasis on adaptive methods for the real-time decoding of mental states; software implementations thereof. * Conducting EEG studies with healthy controls and stroke patients. * Analysis of EEG experiments. * Supervision of Bachelor students. * Scientific dissemination of results (conferences, publications). Requirements: * Excellent Master studies on Computer Science, Mathematics, Electrical Engineering, Biomedical Engineering, Cognitive Science or closely related fields. * Knowledge in theory and methods of machine learning / artificial intelligence; very good math knowledge (specifically in probability theory, statistics, linear algebra). * Good knowledge about the design, the analysis and implementation of algorithms; experience with mathematical software (e.g. Matlab). * Hands-on experience in the design, execution and analysis of electrophysiological experiments, and in signal processing of EEG-, EMG-, EOG- or ECoG data. * Excellent communication skills in English The BrainStateDecoding Lab: The international lab is embedded into the Cluster of Excellence BrainLinks-BrainTools at the University of Freiburg. The cluster provides supporting career actions for PhD students. Tight collaborations with other BLBT groups are the basis for investigating novel machine learning approaches for the real-time analysis of brain signals. The activities range from theory development to BCI applications in a clinical context and for healthy users. Implementing an equal-chances policy and family-friendly working conditions, we explicitly encourage applications of female researchers. Handicapped applicants will be given priority to non-handicapped applicants, if they have comparable qualifications. Further information: www.bsdlab.uni-freiburg.de, www.brainlinks-braintools.uni-freiburg.de and via Dr. Tangermann. How to apply: Please state the position code BCI-4 when sending your application documents (including a CV, statement of your research interests, list of publications, references, Master and Bachelor degrees and course lists) as a single PDF document via email to Dr. Michael Tangermann (michael.tangermann(a)blbt.uni-freiburg.de) -- Dr. Michael Tangermann Phone: +49.(0)761.2038423 Fax : +49.(0)761.2038417 University of Freiburg BrainLinks-BrainTools Excellence Cluster Brain State Decoding Lab Albertstr. 23, Room 0.003 79104 Freiburg, Germany http://www.bsdlab.uni-freiburg.de

1 0

Postdoctoral fellowships in computational neuroscience and neuroengineering at U. Washington
by Adrienne Fairhall Jan. 28, 2015

Jan. 28, 2015

We invite applications for the Washington Research Foundation Innovation Postdoctoral Fellowships in Neuroengineering at the University of Washington in Seattle. These fellowships are offered through the UW Institute for Neuroengineering, which aims to stimulate research excellence in the development of novel approaches to the understanding and manipulation of brain function. These highly selective fellowships fund research in computational and engineering approaches to neuroscience; joint mentoring between faculty in different disciplines (CS, engineering, mathematics, biology) is strongly encouraged. Applications are due by March 13, 2015. Please see http://uwin.washington.edu/post-docs/ for more details.

1 0

PhD position in decoding algorithms for PNS - closing soon
by Simon Schultz Jan. 28, 2015

Jan. 28, 2015

The following PhD studentship (part of the new Centre for Doctoral Training in Neurotechnology at Imperial College) is closing very soon (30th January). I would like to encourage applicants with good theoretical skills (e.g. math/physics/electrical-engineering) to apply. Peripheral nerve decoding algorithms for bioelectronic medicines Simon Schultz (Bioengineering), Nick Jones (Maths), Hannah Tipney (GSK) Bioelectronic medicine, in which devices connected to groups of individual nerve fibres are used to control the patterns of electrical signals to restore health to organs and biological functions, has been suggested to have the potential to make major advances in the treatment of conditions resistant to drugs, including diabetes, obesity, hypertension and pulmonary diseases (Famm et al, Nature 496:159-61, 2013). The development of bioelectronic medicines, however, is contingent upon the existence of suitable technology for monitoring and perturbing activity in peripheral nerve fibres; in particular, being able to “read out” and interpret signals carried by a peripheral nerve fibre is an essential milestone. In this project, we will develop decoding algorithms capable of reading out both continuous physiological signals, and discrete “events”, from peripheral nervous system (PNS) electrical signals. These algorithms will be applied to a variety of datasets collected by members of a research network in Bioelectronic Medicines that has been established by GlaxoSmithKline, plc. The project will involve two phases. The first year will comprise an MRes Project, in which the student will gain a deep understanding of the different approaches that can be taken to decoding physiological signals, testing algorithms on simulated data, which will be generated in the course of the project; we expect this computational model of a peripheral nerve to be a major output of the MRes year. In the following years, and exploiting and advancing a new signal processing architecture, the student will develop refined decoding algorithms optimised for use with peripheral nerve signals at several spatial scales, and will work with research groups across the GSK network to apply these algorithms to real PNS datasets. To apply, see the Centre for Neurotechnology website: http://www3.imperial.ac.uk/neurotechnology/cdt/application

1 0