- Comp-neuro - lists.cnsorg.org

First release of VERTEX cortical tissue LFP simulator
by Marcus Kaiser Aug. 25, 2014

Aug. 25, 2014

Dear colleagues, Many of you may be interested the first release of our VERTEX simulator for biologically realistic models of *primate* cortical tissue. The Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX) is a Matlab tool for simulating extracellular potential recordings in spiking neural network (SNN) models. As a first application, our model allows us to reproduce temporal and spatial gamma oscillation features of in vitro MEA recordings of macaque cortex using more than 100,000 model neurons. However, adapting the code to other species or tissue types is also possible in the future (see FAQ on our website). VERTEX 1.0 Release Features - VERTEX simulator allows large simulations (> 100 000 neurons) on single computers - *In silico* neuronal network model of an *in vitro* brain slice recording - Realistic local field potential recording with “virtual electrodes” at any 3D point - Direct comparisons between simulated and experimentally observed tissue Software, a two-minute introductory video, tutorials, manuals, and a FAQ can be found at: http://www.vertexsimulator.org/ This release is in conjunction with our publication: Tomsett RJ, Ainsworth M, Thiele A, Sanayei M, Chen X, Gieselmann A, Whittington MA, Cunningham MO, Kaiser M. Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): Comparing multi-electrode recordings from simulated and biological mammalian cortical tissue. Brain Structure and Function (in press) http://dx.doi.org/10.1007/s00429–014–0793-x <http://dx.doi.org/10.1007/s00429-014-0793-x> Best, Marcus -- Marcus Kaiser, Ph.D. Associate Professor (Reader) in Neuroinformatics School of Computing Science Newcastle University Claremont Tower Newcastle upon Tyne NE1 7RU, UK Lab website: http://www.dynamic-connectome.org/ Neuroinformatics@Newcastle: http://neuroinformatics.ncl.ac.uk/ -- Best, Marcus -- Marcus Kaiser, Ph.D. Associate Professor (Reader) in Neuroinformatics School of Computing Science Newcastle University Claremont Tower Newcastle upon Tyne NE1 7RU, UK Lab website: http://www. <http://www.biological-networks.org/>dynamic-connectome.org <http://www.dynamic-connectome.org/> Neuroinformatics@Newcastle: http://neuroinformatics.ncl.ac.uk/

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Research Scientist Computational Neuroscience Position in Toronto
by Frances Skinner Aug. 23, 2014

Aug. 23, 2014

Computational Neuroscience Research Scientist Position The Toronto Western Research Institute of the University Health Network invites applicants to apply for a Scientist position in the area of Computational Neuroscience. The ideal candidate will have a PhD in a relevant field, have research experience and expertise in mathematical and computational modeling techniques, and research interests that complement those of the Institute in “Degenerative Disorders of Aging”. Candidates whose research interests encompass modeling at multiple levels (molecular, cellular, network, systems), and who have experimental and/or collaborative experimental experience are especially encouraged. The successful candidate will have the ability to establish an independent, well-funded program and will be eligible for appointment at the appropriate level within the University of Toronto. Applications must be emailed by October 19th, 2014 and should include: 1) CV, 2) Statement of research interests, and 3) Contact information (including email) for three referees Reply, by email only, and in confidence to: TWRIrecruitment(a)uhnresearch.ca with subject line: CompNeuro University Health Network thanks all applicants, however, only those selected for an interview will be contacted. -- Frances Skinner, PhD TWRI/UHN and Univ Toronto www.skinnerlab.org

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JOURNAL OF INTEGRATIVE NEUROSCIENCE
by Roman Poznanski Aug. 23, 2014

Aug. 23, 2014

JOURNAL OF INTEGRATIVE NEUROSCIENCE Volume 13, No.3, September 2014 http://www.worldscinet.com/jin 1. Theoretical predications of the effects of temperature on simulated adaptive processes in human motor nerve axons at 20°C–42°C D. I. Stephanova<http://www.worldscientific.com/action/doSearch?Contrib=Stephanova%2C+D+I>, M. Daskalova<http://www.worldscientific.com/action/doSearch?Contrib=Daskalova%2C+M> DOI: 10.1142/S0219635214500162 2. Motor afferents from the cerebellum, zona incerta and substantia nigra to the mediodorsal thalamic nucleus in the rat Safiye Çavdar<http://www.worldscientific.com/action/doSearch?Contrib=%C3%87avdar%2C+S>, Merve Özgür<http://www.worldscientific.com/action/doSearch?Contrib=%C3%96zg%C3%BCr%2C+M>, Sanem Pınar Uysal<http://www.worldscientific.com/action/doSearch?Contrib=Uysal%2C+S+P>, Özge Ceren Amuk<http://www.worldscientific.com/action/doSearch?Contrib=Amuk%2C+%C3%96+C> DOI: 10.1142/S0219635214500198 3. An ERP study of simple addition: The semantics and syntax of arithmetic operation signs Shelley Shaul<http://www.worldscientific.com/action/doSearch?Contrib=Shaul%2C+S>, Pearla Nesher<http://www.worldscientific.com/action/doSearch?Contrib=Nesher%2C+P> DOI: 10.1142/S0219635214500186 4. The role of featural processing in other-race face classification advantage: An ERP study Zhenhua Liu<http://www.worldscientific.com/action/doSearch?Contrib=Liu%2C+Z>, Qinghua Zhang<http://www.worldscientific.com/action/doSearch?Contrib=Zhang%2C+Q>, Yan Li<http://www.worldscientific.com/action/doSearch?Contrib=Li%2C+Y>, Yifeng Du<http://www.worldscientific.com/action/doSearch?Contrib=Du%2C+Y>, Wei Dong<http://www.worldscientific.com/action/doSearch?Contrib=Dong%2C+W>, Lun Zhao<http://www.worldscientific.com/action/doSearch?Contrib=Zhao%2C+L> DOI: 10.1142/S0219635214500125 5. fMRI evidence for dissociation between priming and conscious recognition M. S. Korsnes<http://www.worldscientific.com/action/doSearch?Contrib=Korsnes%2C+M+S>, S. J. Magnussen<http://www.worldscientific.com/action/doSearch?Contrib=Magnussen%2C+S+J> DOI: 10.1142/S0219635214500149 6. Visual MMN elicited by orientation changes of faces Wei Wang<http://www.worldscientific.com/action/doSearch?Contrib=Wang%2C+W>, Danmin Miao<http://www.worldscientific.com/action/doSearch?Contrib=Miao%2C+D>, Lun Zhao<http://www.worldscientific.com/action/doSearch?Contrib=Zhao%2C+L> DOI: 10.1142/S0219635214500137 7. MEG localization of spike sources in human patients with brain tumors T. Birbilis<http://www.worldscientific.com/action/doSearch?Contrib=Birbilis%2C+T>, P. Anninos<http://www.worldscientific.com/action/doSearch?Contrib=Anninos%2C+P>, I. Seimenis<http://www.worldscientific.com/action/doSearch?Contrib=Seimenis%2C+I>, A. Adamopoulos<http://www.worldscientific.com/action/doSearch?Contrib=Adamopoulos%2C+A>, A. Kotini<http://www.worldscientific.com/action/doSearch?Contrib=Kotini%2C+A> DOI: 10.1142/S0219635214500150 8. Effects of temperature on simulated electrotonic potentials and their current kinetics of human motor axons at 20°C–42°C D. I. Stephanova<http://www.worldscientific.com/action/doSearch?Contrib=Stephanova%2C+D+I>, M. Daskalova<http://www.worldscientific.com/action/doSearch?Contrib=Daskalova%2C+M> DOI: 10.1142/S0219635214500095 9. Color properties of the motion detectors projecting to the goldfish tectum: I. A color matching study Vadim Maximov<http://www.worldscientific.com/action/doSearch?Contrib=Maximov%2C+V>, Elena Maximova<http://www.worldscientific.com/action/doSearch?Contrib=Maximova%2C+E>, Ilija Damjanović<http://www.worldscientific.com/action/doSearch?Contrib=Damjanovi%C4%87%2C+I>, Paul Maximov<http://www.worldscientific.com/action/doSearch?Contrib=Maximov%2C+P> DOI: 10.1142/S0219635214500113 10. Neural mechanisms underlying conflict monitoring over risky decision alternatives: Evidence from ERP in a Go/Nogo task Shuzhen Wang<http://www.worldscientific.com/action/doSearch?Contrib=Wang%2C+S>, Ning Hui<http://www.worldscientific.com/action/doSearch?Contrib=Hui%2C+N>, Xinsheng Zhou<http://www.worldscientific.com/action/doSearch?Contrib=Zhou%2C+X>, Kaifeng He<http://www.worldscientific.com/action/doSearch?Contrib=He%2C+K>, Yuanyuan Yu<http://www.worldscientific.com/action/doSearch?Contrib=Yu%2C+Y>, Jing Shuai<http://www.worldscientific.com/action/doSearch?Contrib=Shuai%2C+J> DOI: 10.1142/S0219635214500101 "The only journal that combines mathematical neuroscience and experimental brain research for the advancement of a well-grounded theoretical neuroscience." --Gilbert A. Chauvet, Chief Editor, Journal of Integrative Neuroscience, 2002-2007 Indexed in: Index Medicus MEDLINE PubMed Biosis Previews Biological Abstracts INSPEC Science Citation Index Expanded ------- Roman R. Poznanski Professor Laboratory of Biological Modeling The Rockefeller University 1230 York Avenue New York, NY 10065-6399 Office: (212) 327-7646 E-mail: rpoznanski(a)rockefeller.edu http://romanpoznanski.blogspot.com and Chief-Editor, Journal of Integrative Neuroscience http://www.worldscinet.com/jin/mkt/editorial.shtml

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MSc program in Neural Systems and Computation - University of Zurich and ETH Zurich
by Michael Pfeiffer Aug. 22, 2014

Aug. 22, 2014

We are inviting applications for the MSc program in Neural Systems and Computation, an interdisciplinary program offered as a Joint Master Program by the University of Zurich and ETH Zurich, Switzerland. The program offers a theoretical and laboratory training in neural computation and systems neuroscience. It offers hands-on knowledge of data gathering, analysis and scientific presentation. Students join an international and interdisciplinary research community with expertise in neuroinformatics, advanced experimental techniques and neuromorphic engineering. Further information can be found on our homepage http://www.nsc.uzh.ch. We offer a specialized full-time Masters program open to students with a Bachelor’s degree in the following disciplines: neurosciences, information technology, electrical engineering, biology, physics, computer sciences, chemistry, mathematics, and mechanical/chemical/control engineering. The core courses (all offered in English) provide a common foundation for students with different educational backgrounds, and cover the following: 1. Systems Neurosciences 2. Neural Computation and Theoretical Neuroscience 3. Neurotechnologies and Neuromorphic Engineering The application deadline for students starting in Spring Semester 2015 is *September 15th 2014*. Details about the application process and required documents can be found here: http://www.nsc.uzh.ch/?page_id=10 The program is affiliated with the Mathematics and Natural Sciences Faculty (MNF) at the University of Zurich (UZH) and the Information Technology and Electrical Engineering Department (D-ITET) of the ETH Zurich. All applications are handled by the University of Zurich. Application documents should be sent to nsc(a)ini.uzh.ch. Michael Pfeiffer -- ========================================= Dr. Michael Pfeiffer Postdoc, Director of Studies NSC Institute of Neuroinformatics University of Zurich and ETH Zurich Winterthurerstrasse 190 CH-8057 Zurich, Switzerland Tel. +41 44 635 30 45 Fax +41 44 635 30 53 pfeiffer (at) ini.phys.ethz.ch http://www.ini.uzh.ch/~pfeiffer/ =========================================

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PhD position available at VU University Medical Center in Amsterdam
by Andre Marquand Aug. 21, 2014

Aug. 21, 2014

Please see below for a PhD Vacancy at the VU University Medical Centre in Amsterdam for employing pattern recognition methods for neuroimaging data analysis. ----------------------------------------------------------- The project The focus of the proposed PhD project is two-fold; First, the PhD student will will employ advanced computational and statistical methods to evaluate the prognostic value of neuroimaging modalities, biomarker, genetic, environmental and clinical characteristics and their combination to classify the course of depression and anxiety. A second part of the project focuses on employing these methods to disentangle phenotypic heterogeneity of depression by identifying different subtypes based on a rich set of neuroimaging and clinical data and biological protein information, and by exploring the genetic basis of different subtypes and their association with course of depression and treatment response. For these purposes, you will work with data from the Netherlands Study of Depression and Anxiety (www.nesda.nl) in which an extensive battery of detailed longitudinal clinical, biomarker, neuroimaging and genetic data have been collected in a large cohort. You will also work with similar data from other international cohorts, and with data from the MOTAR study (www.motar.nl) in which the effects of antidepressant and running treatments are examined. This project will integrate across these data-sources using a variety of methods, including the application of supervised and unsupervised machine learning techniques. You will be involved in the processing of neuroimaging data (structural MRI, functional MRI), associating these data with biomarker, clinical and genetics information and using machine learning methods to classify the patients. You will be working in a multidisciplinary team with young and enthusiastic researchers, who have expertise in psychiatry, genetics, neuroimaging, statistics/engineering and epidemiology. Your challenge As a PhD Student your main tasks and responsibilites are: • Help examine predictors of the naturalistic course and treatment response in depression and anxiety; • Identifying subtypes of depression and anxiety based on multimodal data sources; • Apply unsupervised and supervised machine learning methods, such as Support Vector Machine and/or probabilistic methods, to genetic, multi-modal neuroimaging, clinical and environmental data from the NESDA study, the MOTAR study and other international cohorts; • Write various scientific papers on the above topics, and complete your research with a PhD thesis. Your profile We are looking for a highly motivated and enthusiastic researcher with a strong interest in psychopathology who has the following background and experience: • A strong numerate background (i.e. a Master's degree in computer science, mathematics, engineering, medical image analysis or related discipline), preferably with emphasis on machine learning, pattern classification, and/or multivariate image analysis; • Experience with neuroimage analysis or with (bio) statistics is desirable; • You have excellent statistical and strong computer programming skills (good command of LINUX, scripting, and Matlab); • You have excellent communications skills in English, both written and verbal; • Having experience in writing (international) publication(s) is a plus. Benefits Salary Scale: OIO (EUR 2.200 in the first year that increases to EUR 2.818 gross per month in the fourth year, based on 36 hours per week). We also offer a set 8.3% end-of-year bonus and 8% holiday pay. For more information about our fringe benefits, please visit http://www.werkenbijvumc.nl/vumc/arbeidsvoorwaarden/ (Dutch version). The PhD position is for four years, you will start with a contract for 12 months. Additional information The Department of Psychiatry of the VU University Medical Center (VUMC) and GGZ inGeest collaborately conduct research, education and academic patient care. The main focus is on depression and anxiety disorders, two common psychiatric disorders with high public health impact. Psychiatric research is embedded in two VU research institutes: EMGO+ and Neuroscience Campus Amsterdam. In this research area more than 150 persons from different disciplines (e.g. psychiatry, psychology, health science) collaborate. Interested? For more information you can contact dr. Lianne Schmaal, via telephone number: +31(0)20 – 788 4592. For more information about the application procedure you can contact mr. Wessel Haytink, recruiter, via telephone number: +31(0)6 – 1066 7718. Please submit your candidacy by latest September 7, 2014 with reference number D2.2014.00077WH via the following link: http://bit.ly/PhDMachineLearning

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Postdoctoral Research Fellow in Computational Brain Modeling and Neural Engineering
by Mark Kramer Aug. 20, 2014

Aug. 20, 2014

A multi-year postdoctoral researcher position in computational neuroscience is available immediately through a collaboration of Massachusetts General Hospital and Boston University. The fellow will be tasked to build neural models capable of simulating and predicting human neural dynamics within and among a network of cortical and subcortical areas. These models will inform the design of adaptive “closed loop” stimulation to treat psychiatric disorders. The researcher will work with an interdisciplinary team of clinical and computational researchers at Harvard Medical School, Massachusetts General Hospital, and Boston University to focus on three central aims: 1) Develop a mean-field computational model of human cortical and subcortical regions, 2) Simulate the impact of electrical stimulation on the model dynamics, 3) Implement data assimilation procedures to link in vivo brain voltage recordings from individual patients to the computational model variables and parameters. Experience in statistics (e.g., parameter estimation, Kalman filtering, particle filtering) and computer programming in MATLAB and C-like languages are required. Knowledge of neuroscience and models of neural population activity are preferred, and we will preferentially interview candidates with prior work in neural simulation or experimental neuroscience. This opportunity is available immediately, and candidates currently available to begin work will be preferred. However, we are happy to negotiate start terms for outstanding candidates. To apply, or for more information about the position, please send an email to Drs. Mark Kramer (mak(a)bu.edu) and Alik Widge (awidge(a)partners.org) Please include an updated CV, names and contact information of three references, and a brief statement of your interest in the position and relevant qualifications. Applications from women and representatives of minority groups are encouraged. See also: http://www.nature.com/naturejobs/science/jobs/446865-postdoctoral-research-… -------- Mark A. Kramer Prof. Math & Stats, BU http://math.bu.edu/people/mak/

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[COSYNE2015] Call for workshop proposals
by Tomas Hromadka Aug. 20, 2014

Aug. 20, 2014

================================================================== Computational and Systems Neuroscience (Cosyne) 2015 MAIN MEETING WORKSHOPS Mar 5 - Mar 8, 2015 Mar 9 - Mar 10, 2015 Salt Lake City, Utah Snowbird Ski Resort, Utah http://www.cosyne.org ================================================================== ------------------------------------------------------------------ CALL FOR WORKSHOP PROPOSALS ------------------------------------------------------------------ PROPOSAL DEADLINE: November 21, 2014. PRE-PROPOSALS: In an effort to coordinate submissions, the organizers are encouraged to submit a pre-proposal by October 31, 2014. Pre-proposals will be shared among submitters. Pre-proposals are requested but not required. The organizers may submit the full proposal by its deadline. A series of workshops will be held after the main Cosyne meeting (http://www.cosyne.org) The goal is to provide an informal forum for the discussion of important research questions and challenges. Controversial issues, open problems, comparisons of competing approaches, and alternative viewpoints are encouraged. The overarching goal of all workshops should be the integration of empirical and theoretical approaches, in an environment that fosters collegial discussion and debate. Preference will be given to proposals that differ substantially in content, scope, and/or approach from workshops of recent years (examples available at http://www.cosyne.org/c/index.php?title=Workshops) Relevant topics include, but are not limited to: sensory processing; motor planning and control; functional neural circuits; motivation, reward and decision making; learning and memory; adaptation and plasticity; neural coding; neural circuitry and network models; and methods in computational or systems neuroscience. Please note that in an effort to enhance the distinctions between workshops, speakers will be asked to commit to only 1-2 workshops. If need be, workshop chairs will work with overcommitted speakers prior to final workshop acceptances to reduce overlap. WORKSHOP DETAILS: - There will be 4-8 workshops/day, running in parallel. - Each workshop is expected to draw between 15 and 80 people. - The workshops will be split into morning (8:00-11:00 AM) and afternoon (4:30-7:30 PM) sessions. - Workshops will be held at Snowbird, a ski resort located 30 miles (typically less than an hour) from the Salt Lake City airport. Buses from the main conference will be provided. SUBMISSION INSTRUCTIONS: Deadline for pre-proposals: October 31, 2014 Deadline for proposals: November 21, 2014 Format: plain text only -- please no attachments, email to: cosyne15workshops(a)googlegroups.com (Claudia Clopath, Robert Froemke) PRE-PROPOSALS should include: - Name(s) and email address(es) of the organizers (no more than 2 organizers per session, please). A primary contact should be designated. - A title. - A brief description of 1) what the workshop will address and accomplish, 2) why the topic is of interest, 3) who is the targeted group of participants. - Names of potential invitees, with indication of confirmed speakers. Preference will be given to workshops with the largest fraction of confirmed speakers. - Proposed workshop length (1 or 2 days). Most workshops will be limited to a single day. If you think your workshop needs 2 days, please explain why. - A brief resume of the workshop organizer along with a short list of workshop-relevant publications (about half a page total). PROPOSALS should include the list of confirmed speakers in addition to components required for a pre-proposal. Workshop organizer responsibilities include coordinating workshop participation and content, scheduling all speakers and submitting a final schedule for the workshop program, and moderating the discussion. Organizers can be speakers but need not speak depending on scheduling constraints. SUGGESTIONS: Experience has shown that the best discussions during a workshop are those that arise spontaneously. A good way to foster these is to have short talks and long question periods (e.g. 30+15 minutes), and have plenty of breaks. We recommend fewer than 10 talks. WORKSHOP COSTS: Detailed registration costs, etc., will be available at cosyne.org. Please note: Cosyne does NOT provide travel funding for workshop speakers. All workshop speakers are expected to pay for workshop registration fees. Participants are encouraged to register early, in order to qualify for discounted registration rates. One complementary (free) organizer registration is provided per workshop. For workshops with 2 organizers, the free registration can be given to one of the organizers or split evenly between them. COSYNE 2015 WORKSHOP CHAIRS: Claudia Clopath (Imperial College London) and Robert Froemke (New York University). QUESTIONS: email: cosyne15workshops(a)googlegroups.com

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Postdoc Position in Sleep and Cognition Lab
by Sara C. Mednick Aug. 20, 2014

Aug. 20, 2014

The Sleep and Cognition (SaC) Lab of the Department of Psychology at the University of California, Riverside has an open position for a postdoc researcher. This researcher will be investigating mechanisms of memory encoding, consolidation, and retrieval by using event-related potential (ERP/EEG) during waking and sleep. Successful candidates should have experience in memory research and EEG methodologies, as well as programming skills. Experience in sleep research is not essential. Position is available immediately. Researchers must possess a doctoral degree. The University of California offers excellent benefits. Salary is based on research experience. The initial appointment is for 1 year with a possibility of extension. Please send your CV, statement of research interests and the names of three references or make inquires to Sara C. Mednick smednick(a)ucr.edu. -- Assistant Professor University of California, Riverside Department of Psychology Sleep and Cognition (SaC) Lab www.saramednick.com www.sleepandcognitionlab.org TEDx Talk <http://www.youtube.com/watch?v=MklZJprP5F0> Amandla awethu!

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[meetings] Australasian Conference on Artificial Life and Computational Intelligence (ACALCI 2015)
by Stephan Chalup Aug. 19, 2014

Aug. 19, 2014

CfP: Australasian Conference on Artificial Life and Computational Intelligence (ACALCI 2015), 5-7 February 2015, The University of Newcastle, Australia http://www.newcastle.edu.au/ACALCI2015<http://newcastle.edu.au/ACALCI2015> PAPER DEADLINE: 12 September 2014 (extended) NOTIFICATION OF ACCEPTANCE: 15 October 2014 PAPER FORMAT: 6-14 pages in Springer LNAI style PUBLICATION: Springer-Verlag LNAI are indexed by Scopus, Zentralblatt MATH, IO-Port, MathSciNet, ACM Digital Library, dblp, EI Engineering Index (Compendex and Inspec databases), and the ISI Conference Proceedings Citation Index - Science (CPCI-S), included in ISI Web of Science. A special issue in the journal Connection Science will invite authors of some of the best papers to submit extended versions of their articles. CONFERENCE TOPICS: ACALCI 2015 will be organised in broad technical sessions that bring together experts from many different fields related to Artificial Life and Computational Intelligence. The forum also encourages associated applied research in domains as diverse as health, the creative arts and finance (to name a few). In this context ACALCI encourages presentations, demonstrations, performances and discussions on innovative research and interdisciplinary projects. WORKSHOPS, TUTORIALS and PERFORMANCES: If you would like to organise a workshop, tutorial or performance in connection with ACALCI2015 please contact the organisers as soon as possible. CONFERENCE WEBPAGE: http://www.newcastle.edu.au/ACALCI2015<http://newcastle.edu.au/ACALCI2015> ----------------------- Stephan Chalup, PhD http://www.newcastle.edu.au/profile/stephan-chalup

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Databrary.org seeks web developer for open source data sharing project
by Rick Gilmore Aug. 19, 2014

Aug. 19, 2014

** Web Developer for Databrary.org ** About Databrary Databrary is a first-of-its-kind web-based data library where scientists who collect and analyze video can store and share their data openly with other researchers. The project is based at New York University (NYU) and Penn State. It has grant support from the U.S. National Science Foundation (NSF) and the National Institutes of Health (NIH). The overall goal is to accelerate the pace of discovery, improve scientific transparency and accountability, and transform research practices in psychology and developmental science. We are growing a team to design and build new open source solutions for science using the latest technologies. Web Developer position description The Databrary project seeks a motivated and flexible developer to help build a unique web-based data library. You will work with users and a small group of developers to design and build the front end UI and back end tools to enable behavioral researchers to collaborate, store, explore, and access research datasets in ways not possible with any existing tool. The ideal candidate will relish the challenge of building a uniquely powerful set of research tools while working on a small team in a diverse and intellectually stimulating academic environment. Responsibilities - Implement dynamic, modular, and responsive web interfaces to organize, present, and manipulate research materials. - Design, implement, test, and validate JavaScript across browsers and platforms. - Integrate feedback from UI experts and researchers (users) to identify and prioritize new features. - Learn, understand, and reorganize research data as needed for better integration with the site. Qualifications - Background in CS or other relevant field and 3+ years programming experience. - Knowledge of AngularJS or other modern web application frameworks. - Extensive experience with jQuery, JSON, HTML5, and CSS3. - Familiarity with standard UNIX development tools such as git. - Understanding of security and ethical concerns around sensitive data. Preferred - History of contributions to open source projects. - Comfortable with discussing and addressing UX/UI design issues. - Experience using RESTful interfaces for structured data. - Sensitive to performance considerations building big data interfaces. - Basic understanding of scientific practices and research tools, such as Matlab, SPSS, or R. To apply - Send the following to jobs(a)databrary.org: - One page cover letter (PDF). - Resume (PDF). - Links to your open source contributions or other samples of your work.

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IU Cognitive Science Faculty Search
by Olaf Sporns Aug. 19, 2014

Aug. 19, 2014

Assistant Professor - Embodied Cognitive Science Cognitive Science Program Indiana University The Cognitive Science Program at Indiana University seeks a tenure track junior level appointment in the area of embodied cognitive science. Successful applicants will take a leadership role in the ongoing development of embodied cognition as a research and teaching focus of the program. Indiana University has a strong history in this area, ranging from theoretical foundations to computational and robotics modeling, to experimental approaches in developmental psychology and neuroscience. Although the emphasis of the position is on computational and/or robotic modeling approaches to problems in embodied cognition, candidates are expected to engage with the breadth of experimental programs and philosophical discussion that make up this interdisciplinary research area. Applicants should have a Ph.D. in Cognitive Science, Computer Science or a closely related field and will join the faculty of a department or school on the Bloomington campus appropriate to their specific background. Applicants are expected to have a record that demonstrates an excellent potential in the areas of research and teaching. Interested candidates should review the application requirements and submit their applications athttps://indiana.peopleadmin.com/postings/1006. Questions regarding the position or application process can be directed to Randall Beer, Cognitive Science Search Committee, 819 Eigenmann, 1900 E. 10th St., Indiana University, Bloomington, IN 47406-7512 orcogsrch(a)indiana.edu. Review of applications will begin on November 1, 2014 and will continue until the position is filled. Indiana University is an equal employment and affirmative action employer and a provider of ADA services. All qualified applicants will receive consideration for employment without regard to age, ethnicity, color, race, religion, sex, sexual orientation or identity, national origin, disability status or protected veteran status. Applications from women and minority group members are especially encouraged. Information about the program and the university is available athttp://www.cogs.indiana.edu/. -- Olaf Sporns -- @spornslab Department of Psychological and Brain Sciences Programs in Neuroscience and Cognitive Science Indiana University Bloomington, IN 47405

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Tenure-track faculty position in computational neuroscience
by Adam Kohn Aug. 19, 2014

Aug. 19, 2014

The Albert Einstein College of Medicine, one of the leading medical schools in New York City, is seeking to fill multiple tenure track faculty positions in the newly formed Department of Systems and Computational Biology. Established in April 2008, the main goal of the new department is to advance our understanding of living systems by developing theoretical, computational and experimental approaches to study complex biological systems. The Albert Einstein College of Medicine, has 750 medical students, 325 graduate students and 360 post-doctoral fellows in training and boasts a strong research faculty covering broad areas of experimental biology, offering outstanding opportunities for collaborative interactions. The 200,000 square foot Price Center for Genetic and Translational Medicine at Einstein, which opened in late 2007, locates computational, systems, and experimental scientists in physical proximity to foster interdisciplinary communication and collaboration. Highly competitive start-up packages are available. We seek outstanding scientists with broad experience and demonstrated collaborative interactions with experimental or clinical investigators. Candidates should have strength in a physical, mathematical or computational field at the Ph.D. or equivalent level. Experience applying these skills to a biological or biomedical area (demonstrated through publications or support) is also required. Areas of interest that would be advantageous, but not required, are: Systems and Computational Neuroscience — visual processing, cortical computation, or population coding; Systems Evolutionary Biology; and Mathematical and Computational Modeling of Complex Traits. Applicants should send a letter of interest, C.V., statement of research and teaching interests, and names of three referees, in electronic format to: Systems and Computational Biology Search Committee Albert Einstein College of Medicine Jack and Pearl Resnick Campus 1300 Morris Park Ave. Price Center, Rm. 153 Bronx, New York 10461 E-mail Address: sysbio(a)einstein.yu.edu Subject line should be: SCB Faculty Search Yeshiva University is an equal opportunity employer committed to hiring minorities, women, individuals with disabilities and protected veterans.

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2nd Call for Abstracts for the 7th Int'l Workshop on Guided Self-Organisation (Freiburg, Dec 16-18, 2014)
by Joschka Boedecker Aug. 19, 2014

Aug. 19, 2014

<apologies for possible cross-posting> Dear colleagues, This is the 2nd Call for Abstracts for the Seventh International Workshop on Guided Self-Organisation (GSO-2014) to be held from December 16-18, 2014 in Freiburg, Germany. http://ml.informatik.uni-freiburg.de/events/gso14/index The workshop will bring together researchers from a richly diverse background who share interest in understanding and designing self-organising systems. Of particular interest are well-founded, but general methods for characterizing such systems in a principled way with the view of ultimately allowing them to be guided toward prespecified goals. Information theory, nonlinear dynamics and graph theory are core to many of these methods, and quantifying complexity and its sources is a common theme. This year, the workshop is organised in collaboration with the BrainLinks-BrainTools cluster of excellence at University of Freiburg ( https://www.brainlinks-braintools.uni-freiburg.de/ ), and one focus theme will be guided self-organisation in neural systems. Submissions to the workshop are extended abstracts (one-two pages). If interested in participating, send an extended abstract (by September 7th, 2014) by email to: jboedeck at informatik dot uni-freiburg dot de The notifications are expected by September 21st, 2014. Authors of accepted submissions will present the content to the workshop (scheduled 30 minutes presentation). It is expected that post-workshop publication of selected papers will follow in a special journal issue (as has been the case for previous GSO workshops). Please consult the website above and also http://guided-self.org/ for more information. Best wishes, Joschka Boedecker Mikhail Prokopenko Martin Riedmiller

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PhD Positions Combining Robotics and Neuroscience at the Queensland University of Technology
by Michael Milford Aug. 19, 2014

Aug. 19, 2014

Several PhD positions are available to work on a challenging interdisciplinary research project spanning neuroscience, robotics and computer vision. Project summary: Current robotic and personal navigation systems leave much to be desired; GPS only works in open outdoor areas, lasers are expensive and cameras are highly sensitive to changing environmental conditions. In contrast, nature has evolved superb navigation systems. This project will solve the challenging problem of place recognition, a key component of navigation, by modelling the visual recognition skills of humans and the rodent spatial memory system. This approach combines the best understood and most capable components of place recognition in nature to create a whole more capable than its parts. The project will produce advances in robotic and personal navigation technology and lead to breakthroughs in our understanding of the brain. This project is a strongly interdisciplinary one spanning neuroscience, robotics and computer vision and candidates will require experience or a skill set that facilitates this interdisciplinary approach - such as a strong background in computer science with an interest in neuroscience, or a neuroscientist / biologist with strong math and coding skills. PhD candidates will have the very challenging but rewarding task of achieving research breakthroughs that impact multiple disciplines simultaneously, as well as producing innovative technologies based on these breakthroughs. Project Collaborators and Support The project will involve collaboration with leading neuroscientists, roboticists, biologists and computer vision researchers at top international universities including Harvard University and Boston University, as well as local collaborators including The University of Queensland. PhD candidates will pursue an independent interdisciplinary research agenda but will have access to researchers from several major robotics and computer vision initiatives based at QUT, including the Australian Research Council Centre of Excellence in Robotic Vision. How to Apply To apply please go to: https://wiki.qut.edu.au/display/cyphy/Applications+Milford. Scholarships and top-ups are available for high quality applicants. Or contact: Dr Michael Milford: https://wiki.qut.edu.au/display/cyphy/Michael+Milford School of Electrical Engineering and Computer Science Queensland University of Technology Phone: +61 7 3138 9969 | E-mail: michael DOT milford(a)qut.edu.au Michael Milford |ARC Future Fellow | Microsoft Faculty Fellow | Senior Lecturer | Electrical Engineering and Computer Science Science and Engineering Faculty | Queensland University of Technology S Block, Room S1110, Gardens Point Campus ph 3138 9969 | email michael.milford(a)qut.edu.au<mailto:c.degroot@qut.edu.au> CRICOS No 00213J * Recent Publications * * Visual Place Recognition Under Extreme Perceptual Change - "SeqSLAM: Visual route-based navigation for sunny summer days and stormy winter nights", International Conference on Robotics and Automation, link http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6224623 * Navigating without GPS, using only a web camera - "Mapping a Suburb with a Single Camera using a Biologically Inspired SLAM System", IEEE Transactions on Robotics, link http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4627450 * Continual mapping and navigation over a 2 week office delivery robot experiment - "Persistent Navigation and Mapping using a Biologically Inspired SLAM System", International Journal of Robotics Research, http://ijr.sagepub.com/content/29/9/1131.abstract * Combining robotics, neuroscience and animal navigation to manage uncertainty when navigating - "Solving Navigational Uncertainty Using Grid Cells on Robots", PLoS Computational Biology, http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000995 More information available at: https://wiki.qut.edu.au/display/cyphy/Michael+Milford Google Scholar Profile: http://scholar.google.com/citations?user=TDSmCKgAAAAJ&hl=en

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Neurocomputing special issue CFP
by Zhijun Yang Aug. 16, 2014

Aug. 16, 2014

Dear Colleagues, Sorry for any possible cross communications. May we draw your attention to a Neurocomputing special issue CFP: Advances on Biological Rhythmic Pattern Generation: Experiments, Algorithms and Application. The full announcement can be found as an internet link below. http://www.journals.elsevier.com/neurocomputing/call-for-papers/special-iss… Instructions for submission: • The submission website for Neurocomputing is located at: http://ees.elsevier.com/neucom/default.asp • To ensure that all relevant manuscripts are correctly identified for inclusion into this special issue, it is important that authors select SI: Creating Biology Rhythm when reaching the “Article Type” step in the submission process. We look forward to receiving your contributions to what promises to be an exciting special issue. Best regards, Zhijun Yang -- Zhijun Yang, BEng, MSc, PhD, Lecturer in Design Engineering Department of Design Engineering and Mathematics School of Science and Technology Middlesex University, London NW4 4BT, UK Voice: +44 (0)7882681333

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Bernstein Conference 2014 - online registration ends August 24
by Kerstin Mosch Aug. 14, 2014

Aug. 14, 2014

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Graduate studies in the neuroscience of decision-making
by Paul Cisek Aug. 13, 2014

Aug. 13, 2014

Graduate studies in the neuroscience of decision-making Department of neuroscience, laboratory of Paul Cisek Applications are invited for a master's or doctoral studentship in cognitive neuroscience. The successful applicant will join a research group studying the neural mechanisms of decision-making in humans and non-human primates using a combination of computational and experimental techniques. Research in our laboratory involves computational models of the nervous system as well as behavioral experiments, transcranial magnetic stimulation, functional magnetic resonance imaging, and multi-electrode recording from the cerebral cortex and subcortical regions. Depending on the applicant's qualifications and interests, they will help to design and conduct behavioral and neurophysiological experiments, analyze data, develop theoretical models of neural systems, prepare manuscripts for publication, and participate in international conferences. See www.cisek.org/pavel for information on current projects and a list of sample publications. While students with a strong background in mathematics, computer science, or biological sciences are particularly encouraged to apply, all motivated students with an interest in understanding the brain will be considered. The successful applicant will receive a competitive salary in accordance with university guidelines. For further information, please contact Dr. Paul Cisek (paul.cisek(a)umontreal.ca) Applicants are asked to submit a cover letter, curriculum vita, copies of academic transcripts, and the names and contact information of 2 references, to: Dr. Paul Cisek Department of neuroscience University of Montréal C.P. 6128 Succursale Centre-ville Montréal, QC H3C 3J7, CANADA Phone: 514-343-6111 x4355 Web: www.cisek.org/pavel email: paul.cisek(a)umontreal.ca Applications will be accepted until the position is filled, but preference will be given to applications received before August 31, 2014. Interviews may be possible at the Bernstein conference (Göttingen, Sept 2-5, 2014, http://www.bernstein-conference.de/) the INT neuroscience conference (Marseille, Oct 2-3, 2014, http://www.int.univ-amu.fr/2nd-colloque-de-l-INT) or the Society for Neuroscience meeting (Washington DC, November 15-19, 2014, http://www.sfn.org/annual-meeting/neuroscience-2014) Montréal is consistently rated as one of the world's most livable cities and has been called "Canada's Cultural Capital". It has the highest number of university students per capita in the continent, with more than 17,000 foreign students from 150 countries and among the lowest tuition fees in North America. Montréal's vibrant neuroscience community spans four major universities (University of Montréal, McGill University, Concordia University, and the University of Québec at Montréal) and the Montréal Neurological Institute. The University of Montréal is the largest university in Québec and the second largest in Canada, with over 55,000 students and 10,000 employees. Deeply rooted in Montréal and dedicated to its international mission, the Université de Montréal is one of the top universities in the French-speaking world. The University of Montréal is a French-speaking institution, and most coursework is in French. However, the master's or PhD thesis can be written in French or English. ----------------------------------------------- Paul Cisek, Ph.D. Groupe de recherche sur le système nerveux central Département de neuroscience, local 4117 Université de Montréal C.P. 6128 Succursale Centre-ville Montréal QC H3C 3J7 Canada Tél: 514-343-6111 x4355 Fax: 514-343-2111 e-mail: paul.cisek(a)umontreal.ca -----------------------------------------------

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3 open PhD psoitions at the Neuroinformatics Lab at the Institute of Cognitive Science, University of Osnabrück, Germany
by Prof. Dr. Gordon Pipa Aug. 13, 2014

Aug. 13, 2014

The Neuroinformatics Research Group (Prof. Dr. Gordon Pipa) of the Institute of Cognitive Science invites applications for 3 Research Assistants (PhD student level), (Salary level E 13 TV-L 50%) to be filled as soon as possible for a period of three years. The position allows for further scientific qualification. We invite applicants that are interested in research in Neuroinformatics, with an emphasis on dynamical systems, machine learning, virtual reality, computational linguistics and electrophysiology. Candidates will participate in a highly international PhD program on cognitive science (with >40 currently enrolled students) and interdisciplinary research projects that can involve cooperation with other disciplines of our institute. Candidates should be highly motivated to understand the structure of neuronal coding and neuronal representations. To study this, we involve different research strategies that range from the development of highly sophisticated data analysis strategies, to modelling of neuronal processes on the level of recurrent networks. The qualification profile of the candidates can range from a purely mathematical neuroscientist, a dynamical systems researcher to interdisciplinary candidates that share interest in performing experiments with the virtual reality combined with EEG and sophisticated machine learning-based analysis of recorded activity (at http://ikw.uni-osnabrueck.de/en/ni/publications you find an overview of recent research topics). Description of Responsibilities: The successful candidate will be involved in several research projects that range from BSc to MSc projects. The position also involves teaching Cognitive Science courses at BSc and MSc level (2 hours/week). Required Qualifications: Candidates are expected to have an excellent academic degree (Master/diploma). Applicants should have an excellent knowledge in the field of machine learning, i.e. generalized linear and state space models, kernel methods, reservoir computing and deep learning. Experience or a strong interest in the fields of complex systems, computational neurosciences, dynamical systems theory and the concepts to study these, i.e. bifurcation and stability analysis, and delay- coupled differential equations, measurements of complexity, are encouraged. Experience or a strong interest in experimental methods such as EEG, and virtual reality are highly welcome. In addition, a strong interest or experience in the estimation of causal interactions from time series is welcome. As a certified family-friendly institution, Osnabrück University is committed to furthering the compatibility between work/studies and family life. As an employer, Osnabrück University is particularly concerned with creating equal opportunities for women and men. Women with relevant qualifications are therefore strongly encouraged to apply for the position. Preference will be given to women with equal qualifications. Furthermore, qualified applicants with disabilities will be favored. Applications with the usual documentation, including two letters of recommendation, should be submitted by e-mail in a single PDF file to the Director of the Institute of Cognitive Science (office(a)ikw.uni-osnabrueck.de) no later than 08.09.2014. An electronic copy should be sent to Prof. Dr. Gordon Pipa (gpipa(a)uni-osnabrueck.de) who can also be contacted for further information. ---------------------------------------------------------------------------- --- Professor and Chair of the Neuroinformatics Department Dr. rer. nat. Gordon Pipa Institute of Cognitive Science, Room 31/404 University of Osnabrueck Albrechtstr. 28, 49069 Osnabrueck, Germany tel. +49 (0) 541-969-2277 fax (private). +49 (0) 5405- 500 80 98 home office. +49 (0) 5405- 500 90 95 e-mail: <mailto:gpipa@uos.de> gpipa(a)uos.de webpage: <http://www.ni.uos.de/> http://www.ni.uos.de research gate: <https://www.researchgate.net/profile/Gordon_Pipa/?ev=prf_act> https://www.researchgate.net/profile/Gordon_Pipa/?ev=prf_act google scholar: <http://scholar.google.de/citations?user=joR6mgEAAAAJ> http://scholar.google.de/citations?user=joR6mgEAAAAJ Personal Assistent and Secretary of the Neuroinformatics lab: Anna Jungeilges Tel. +49 (0)541 969-2390 Fax +49 (0)541 969-2246 Email: <mailto:anna.jungeilges@uni-osnabrueck.de> anna.jungeilges(a)uni-osnabrueck.de visit us on <http://www.facebook.com/CognitiveScienceOsnabruck> http://www.facebook.com/CognitiveScienceOsnabruck <https://twitter.com/#!/CogSciUOS> https://twitter.com/#!/CogSciUOS

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Workshop on Stochastic Neural Computation in Paris
by Wolfgang Maass Aug. 13, 2014

Aug. 13, 2014

I am organizing a Workshop on Stochastic Neural Computation on Nov.27 and 28, 2014 in Paris, at the European Institute for Theoretical Neuroscience. You are welcome to attend, and present a poster (if it fits into the context of this workshop). This will be a very informal "working" workshop, where we want to bring together experts from neuroscience, cognitive science, theory, and neuromorphic hardware, that are working on different angles of stochastic neural computation with biological or artificial spiking neurons. The talks will focus on new results. We will also have plenty of time to discuss open problems and challenges that arise. Possibly this meeting could mark the beginning of some loose research network around this exciting research topic. You can find a preliminary program at https://flagship.kip.uni-heidelberg.de/jss/Ag?eMAt=38&showAgenda=x&eKn=SCom… Information on the venue and hotel information is available at https://flagship.kip.uni-heidelberg.de/jss/Ag?eMAt=38&SiD=x&eKn=SComNo27 The participation is free, but prior registration by October 1 is required on https://flagship.kip.uni-heidelberg.de/jss/Ag?eMAt=38&eKrn=SComNo27 Under "Registration type" on the registration page you can indicate whether you want to present a poster (please send title and abstract to me per email). There will be no registration fee. best regards Wolfgang Maass -- Prof. Dr. Wolfgang Maass Institut fuer Grundlagen der Informationsverarbeitung Technische Universitaet Graz Inffeldgasse 16b , A-8010 Graz, Austria Tel.: ++43/316/873-5822 Fax ++43/316/873-5805 http://www.igi.tugraz.at/maass/Welcome.html

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Neural plasticity for rich and uncertain robotic information streams, abstract deadline extended 12th September.
by f.vandervelde＠utwente.nl Aug. 13, 2014

Aug. 13, 2014

Dear All, We extended the abstract submission deadline for the research topic “Neural plasticity for rich and uncertain information streams”, hosted by Frontiers in Neurorobotics, due to requests. The new deadline is 12th of September. Note that the paper submission deadline remains unchanged (Jan 12, 2015). Description: Models of adaptation and neural plasticity are often demonstrated in robotic scenarios with heavily pre-processed and regulated information streams to provide learning algorithms with appropriate, well timed, and meaningful data to match the assumptions of learning rules. On the contrary, natural scenarios are often rich of raw, asynchronous, overlapping and uncertain inputs and outputs whose relationships and meaning are progressively acquired, disambiguated, and used for further learning. Therefore, recent research efforts focus on neural embodied systems that rely less on well timed and pre-processed inputs, but rather extract autonomously relationships and features in time and space. In particular, realistic and more complete models of plasticity must account for delayed rewards, noisy and ambiguous data, emerging and novel input features during online learning. Such approaches model the progressive acquisition of knowledge into neural systems through experience in environments that may be affected by ambiguities, uncertain signals, delays, or novel features. This research topic promises to unveil fundamental properties and dynamics of neural learning system that are naturally immersed in a rich information flow. We invite papers describing advances in robotic neural learning systems that model adaptation or plasticity with a rich and realistic stream of information. Abstract Submission Deadline (extended): Sep 12, 2014, Article Submission Deadline: Jan 12, 2015 Topic Editor(s): Andrea Soltoggio, Frank van der Velde Frontiers, a Swiss open-access publisher, recently partnered with Nature Publishing Group to expand its researcher-driven Open Science platform. Frontiers articles are rigorously peer-reviewed, can be disseminated freely and are widely read by your colleagues and by the broader scientific and medical research communities. The idea behind a research topic is to create an organized, comprehensive collection of several contributions, as well as a forum for discussion and debate. Contributions can be articles describing original research, methods, hypothesis & theory, opinions, etc. We have created a homepage on the Frontiers website (Frontiers in Neurorobotics) where all articles will appear after peer-review and where participants in the topic will be able to hold relevant discussions: http://www.frontiersin.org/Neurorobotics/researchtopics/Neural_plasticity_f…. Frontiers will also compile an e-book, as soon as all contributing articles are published, that can be used in classes, be sent to foundations that fund your research, to journalists and press agencies, or to any number of other organizations. As such, a manuscript accepted for publication incurs a publishing fee, which varies depending on the article type. Research Topic manuscripts receive a significant discount on publishing fees. Please take a look at this fee table: http://www.frontiersin.org/about/PublishingFees. Once published, your articles will remain free to access for all readers, and will be indexed in PubMed and other academic archives. As an author in Frontiers, you retain the copyright to your own papers and figures. Should you choose to participate, please confirm by sending me a quick email and then your abstract no later than Sep 12, 2014 using the following link:http://www.frontiersin.org/Neurorobotics/researchtopics/Neural_plastic… With best regards, Frank van der Velde and Andrea Soltoggio Guest Associate Editors, Frontiers in Neurorobotics www.frontiersin.org

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Seeking community input for Neurodata Without Borders
by Jeff Teeters Aug. 13, 2014

Aug. 13, 2014

Dear Colleague, The Neurodata Without Borders (NWB) project has just started. The project goal is to build a common data format for neurophysiology data from Allen Brain Institute, Janelia Farm and two labs from NYU and Caltech. Although focusing on a limited set of use cases, the project also aims to develop products that will serve the broader community. At this point we would like to solicit community input about ideas/approaches for designing a generalizable neurophysiology data format. If you are interested in contributing to this project, please review the project description at: https://crcns.org/NWB and fill out the questionnaire: https://docs.google.com/forms/d/1CNTd4M-8kQ_WhEZc7n7WxpTa0LOupt_q3z21E1fRxj… On the basis of the questionnaire responses and ensuing communication, we will organize the first hackathon meeting of the project, to be held November 20 – 22, 2014 (just after SfN) at Janelia Farm, in Ashburn, Virginia. At this hackathon we will discuss in detail the requirements for a common format based on the project use cases and also discuss, compare and evaluate alternative techniques for implementing the common format. More information about the project is available in a recent press release: http://www.kavlifoundation.org/kavli-news/prominent-us-research-institution… Please forward this email to anyone you know with relevant expertise who may be interested in contributing to this project. Thank you, Fritz Sommer and Jeff Teeters Redwood Center for Theoretical Neuroscience UC Berkeley

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DEADLINE EXTENDED: 8th International Conference on Bio-inspired Information and Communications Technologies (BICT 2014, formerly BIONETICS)
by Jun Suzuki Aug. 12, 2014

Aug. 12, 2014

CFP: 8th International Conference on Bio-inspired Information and Communications Technologies (BICT 2014, formerly BIONETICS) http://www.bionetics.org/ Paper submission deadline extended: September 1, 2014 December 1 (Mon) - December 3, 2014 (Wed) Boston, MA, USA In-corporation with ACM BICT 2014 aims to provide a world-leading and multidisciplinary venue for researchers and practitioners in diverse disciplines that seek the understanding of key principles, processes and mechanisms in biological systems and leverage those understandings to develop novel information and communications technologies (ICT). BICT 2014 targets two thrusts: THRUST 1: Indirect/Weak Bioinspiration (ICT designed after biological principles, processes and mechanisms). Examples include evolutionary computation, artificial gene regulatory networks, neural computation, swarm intelligence, cellular automata, artificial immune systems, artificial life, artificial chemistry, reaction-diffusion computing, simulated annealing, self-organization and network science. THRUST 2: Direct/Strong Bioinspiration (ICT utilizing biological materials and systems). Examples include cellular computing, molecular computing/communication, membrane computing, DNA computing and memory, bacterial computing, Physarum computing and quantum computing. Expected, but not exclusive, topics are: * Signal/information processing and communication for bio-inspired ICT * Algorithms and their applications for bio-inspired ICT * Formal models and methods for bio-inspired ICT * Bio-inspired software and hardware systems * Modeling, simulations and empirical experiments of bio-inspired ICT * Self-* and stability properties in bio-inspired ICT * Security, robustness and resilience in bio-inspired ICT * Design, configuration and management issues in bio-inspired ICT * Software engineering and performance engineering in bio-inspired ICT * Tools, testbeds and deployment aspects in bio-inspired ICT * Applications, experiences and standardization of bio-inspired ICT * Socially-aware, game theoretic and other metaphor-assisted interdisciplinary research Application domains include, but not limited to, autonomic computing, bioinformatics, biomedical engineering, computer networks, computer vision, data mining, e-health, green computing and networking, grid/cloud computing, intelligent agents, mechanical engineering, molecular communication, nano-scale computing and networking, optimization, pervasive computing, robotics, security, social networks, software engineering and systems engineering. IMPORTANT DATES: Regular paper submission due: September 1 Short and poster/demo paper submission due: September 22 Notification for regular papers: September 22 Notification for short and poster/demo papers: October 6 Camera ready due: October 13 SPECIAL TRACKS: In addition to the regular track that covers general/mainstream topics, BICT 2014 features the following special tracks that focus on specific, emerging or underrepresented topics. * Artificial, Biological and Bio-Inspired Intelligence (ABBII) * Artificial Intelligence and Software Engineering (AISE) * Body Area Soft Computing (BASC) * Biologically-Inspired Process Calculi (BIPC) * Bio-Inspired Machine Vision (BIMV) * Bio-inspired/Biomimetic Microsystems & Microdevices (BMM) * Bio-inspired Wireless Network Security (BWNS) * Complex Adaptive Systems (CAS) * Engineering Applications from Molecular and Gene Regulatory Networks (EMNET) * Molecular Communication and Networking (MCN) * Morphogenetic Collective Systems (MCS) * Modularization for Practical Software Engineering (MPSE) * Resilient Networks (RN) * Swarm and Modular Robotics (SAMR) * Smart Body Area Networks (SBAN) * Security and Privacy in Bio-inspired Networks (SPBN) PAPER SUBMISSION: Authors are invited to submit regular papers (up to 8 pages each), short papers (up to 4 pages each) or poster/demo papers (up to 2 pages each) in ACM's paper template. Up to two extra pages are allowed for each paper with extra page charges. See http://bionetics.org/2014/show/initial-submission for more details. PUBLICATION: All accepted paper will be published through ACM Digital Library and submitted for indexing by SI, EI Compendex, Scopus, ACM Library, Google Scholar and many more. Selected papers will be considered for publication in leading journals including: * ACM/Springer Mobile Networks and Applications * Elsevier Information Sciences * Elsevier Nano Communication Networks Journal * Int'l Journal of Software Engineering and Knowledge Engineering * Cloud-integrated Cyber-Physical Systems (Springer book) KEYNOTE SPEAKERS: * Andrew Adamatzky, University of the West of England, Bristol, UK * Gabriel Ciobanu, Romanian Academy, ICS, Iasi, Romania * Andrew Eckford, York University, Canada * Valeriy Perminov, BioTeckFarm, Ltd., Russia * Hiroki Sayama, SUNY Binghamton, USA * Theresa Schubert, Bauhaus-Universität Weimar, Germany * Jon Timmis, University of York, UK * Honggang Wang, University of Massachusetts, Dartmouth, USA * Justin Werfel, Harvard University, USA GENERAL CHAIR: Jun Suzuki, University of Massachusetts, Boston, USA PC CHAIR: Tadashi Nakano, Osaka University, Japan PC VICE CHAIRS: Andrew Adamatzky, University of the West of England, UK Gabriel Ciobanu, Romanian Academy, Institute of Computer Science, Romania Douglas Dow, Wentworth Institute of Technology, USA Hiroaki Fukuda, Shibaura Institute of Technology, Japan Tyler Garaas, Mitsubishi Electric Research Laboratories, USA Preetam Ghosh, Virginia Commonwealth University, USA Isao Hayashi, Kansai University, Japan Yu-Hsiang Hsu, National Taiwan University, Taiwan Saori Iwanaga, Japan Coast Guard Academy, Japan Masao Kubo, National Defense Academy, Japan Paul Leger, Universidad Católica del Norte, Chile Shih-Hsi "Alex" Liu, California State University, Fresno, USA Michael L. Mayo, US Army Engineer Research and Development Center, USA Parisa Memarmoshrefi, University of Goettingen, Germany Marjan Mernik, University of Maribor, Slovenia Alan Millard, University of York, UK Michael Moore, USA Marc Pomplun, University of Massachusetts Boston, USA Florian Raudies, Boston University, USA Hiroshi Sato, National Defense Academy, Japan Hiroki Sayama, SUNY Binghamton, USA Tomohiro Shirakawa, National Defense Academy of Japan, Japan Jon Timmis, University of York, UK Athanasios Vasilakos, University of Western Macedonia, Greece Honggang Wang, University of Massachusetts Dartmouth, USA Jun Zhou, Shanghai Jiao Tong University, China

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Parallel computing workshop at SFN 2014 meeting
by Ted Carnevale Aug. 12, 2014

Aug. 12, 2014

What: Using the Neuroscience Gateway Portal for Parallel Simulations A Satellite Symposium at the 2014 Society for Neuroscience Meeting Where: Location to be announced in downtown Washington, DC When: 9 AM - Noon on Saturday, November 15, 2014 Speakers to include: A. Majumdar, S. Sivagnanam, and T. Carnevale Registration deadline: Friday, October 31, 2014 This workshop is for neuroscientists who need to use parallel supercomputers for large modeling projects. With support from NSF, we have been developing the Neuroscience Gateway Portal (NSG) http://www.nsgportal.org/, which * provides free CPU time on NSF-supported high performance computing resources * has a browser-based interface that simplifies the tasks of uploading models, specifying job parameters, monitoring job status, and storing and retrieving output data * already has many widely-used simulatiors optimally installed and configured, including Brian, GENESIS3, NEST, NEURON, and PyNN The workshop will combine didactic presentations by NSG's developers, discussions with experienced users, and hands on instruction in how to use the portal. Come find out how the NSG can be useful in your own research! For more information and the online registration form see http://www.neuron.yale.edu/neuron/static/courses/nsg2014/nsg2014.html --Ted

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postdoctoral position, Deep Brain Stimulation in Parkinson's disease, IUPUI and Purdue University
by Leonid Rubchinsky Aug. 12, 2014

Aug. 12, 2014

Postdoctoral opening in computational neuroscience The Department of Mathematical Sciences at Indiana University-Purdue University Indianapolis (IUPUI) invites applications for a postdoctoral position in the area of mathematical and computational neuroscience. The position is with a collaborative group of scholars from the Department of Mathematical Sciences at IUPUI, Weldon School of Biomedical Engineering at Purdue University and the Department of Neurosurgery of the Indiana University School of Medicine. The current research project is aimed at the development of adaptive deep brain stimulators for Parkinson's disease. Part of the duties may also include some teaching in the Mathematical Sciences. The position offers excellent interdisciplinary training possibilities in mathematical biology and computational neuroscience. Qualifications: Applicants are expected to have a Ph.D. in mathematics, physics, neuroscience, biomedical engineering, computer science or other related field. Applicants should have strong quantitative skills in data analysis and modeling and a strong interest in neuroscience applications. Experience in nonlinear dynamics/control theory/neurophysiology is a plus. How to apply: Send your CV with a list of publications, research statement, and arrange two-three recommendation letters to be sent to Dr. Leonid Rubchinsky via e-mail: leo(a)math.iupui.edu. Address all your inquiries to the same e-mail. Alternatively send your application by regular mail to: Dr. Leonid Rubchinsky, Department of Mathematical Sciences, IUPUI, 402 N. Blackford Street, LD 270, Indianapolis, IN 46202. Screening of applications will continue until position is filled. IUPUI is an EEO/AA Employer, M/F/D. *********************** Leonid Rubchinsky, PhD Associate Professor Department of Mathematical Sciences, Indiana University - Purdue University, Indianapolis Stark Neurosciences Research Institute, Indiana University School of Medicine 402 N. Blackford St Indianapolis, IN 46202 leo(a)math.iupui.edu http://www.math.iupui.edu/~leo 317-274-9745 317-274-3460 (fax) ***********************

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Job offer: PhD student position
by Seeger, Simone Aug. 12, 2014

Aug. 12, 2014

The Department of Theoretical Neuroscience (Head: Prof. Daniel Durstewitz) at the Central Institute of Mental Health (Mannheim) invites applications for a PhD student position (E 13 TV-L) (50% of the fulltime weekly hours) in the newly founded research group Data-driven network models of higher cognitive functions (Head: Dr. Joachim Hass) to be filled as soon as possible. The position is initially limited for 3 years. The research group develops biologically realistic computational neural network models of the neocortical structures such as the prefrontal cortex and the motor cortex. These models closely adhere to physiological data from both in vitro and in vivo experiments and are used to study higher cognitive functions such as time perception and working memory. The successful candidate will work in the project "The human mirror neuron system - measurement and beyond" funded by the Heidelberg Academy for Sciences and Humanities. The joint project of the Departments of Theoretical Neuroscience and Clinical Psychology of the Central Institute of Mental Health aims at a deeper understanding of the mirror neuron system in humans, which is thought to play a crucial role in social cognition by representing the emotions and intentions of others in the motor cortex. The project combines multimodal measurements (involving fMRI, EEG, transcranial magnetic stimulation and genotyping) with computational modeling. The Central Institute of Mental Health is an internationally renowned research institute for psychiatry and neuroscience as well as a clinic for psychiatry, psychotherapy and psychosomatics (part of the medical faculty of the University of Heidelberg). The research group closely interacts with neurobiologists and psychologists at the institute. The Department of Theoretical Neuroscience is focused on computational modeling and statistical data analysis of prefrontal cortex and hippocampus functions. It is one of the core research units of the Bernstein Center for Computational Neuroscience (BCCN) Heidelberg-Mannheim. Access to high-performance computing facilities is provided. Tasks: The project involves the development of a rate-based, brain-scale model as well as the further development of an existing spiking network model of the motor cortex. The resulting twostage model is then being adapted to the multimodal experimental data using stochastic optimization techniques. In particular, the effects of the transcranial magnetic stimulation and different levels of dopamine and oxytocin are to be implemented in the model and directly compared with the experimental data. Participation in the project organization and publication writing is also expected. It is also possible to participate in the analysis of the fMRI data. Requirements: The candidate should have a university degree (master or equivalent) in physics, mathematics, computer science, computational neuroscience or similar, a strong interest in neurobiological research and very good programming skills (ideally in MATLAB and C). Good communication skills in English as well as knowledge in nonlinear dynamics, numerical optimization or neural modeling are also required. Knowledge in neuroscience or experimental psychology is beneficial. Applicants should sent their application documents (cover letter including a brief description of personal qualifications and future research interests, CV and contact details of two personal references) to joachim.hass(a)zi-mannheim.de<mailto:joachim.hass@zi-mannheim.de>. Questions and informal discussions about the position are also welcome under this email address. The call is open until the position is filled. *** Simone Seeger, M.A. Administration Bernstein Center for Computational Neuroscience Zentralinstitut für Seelische Gesundheit Postfach 12 21 20, 68072 Mannheim J5, 68159 Mannheim Telefon: 0621/1703-1326 oder 06221/54-8310 Fax: 0621/1703-2915 E-Mail: Simone.Seeger(a)zi-mannheim.de<mailto:Simone.Seeger@zi-mannheim.de> Internet: http://www.bccn-heidelberg-mannheim.de<http://www.bccn-heidelberg-mannheim.de/> *** Simone Seeger, M.A. Administration Bernstein Center for Computational Neuroscience Zentralinstitut für Seelische Gesundheit Postfach 12 21 20, 68072 Mannheim J5, 68159 Mannheim Telefon: 0621/1703-1326 oder 06221/54-8310 Fax: 0621/1703-2915 E-Mail: Simone.Seeger(a)zi-mannheim.de<mailto:Simone.Seeger@zi-mannheim.de> Internet: http://www.bccn-heidelberg-mannheim.de<http://www.bccn-heidelberg-mannheim.de/>

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