- Comp-neuro - lists.cnsorg.org

MuTE software UPDATE: the graphical user interface is ready
by Alessandro Montalto April 4, 2016

April 4, 2016

Dear all, I am very pleased to announce the availability of the updated version of MuTE, a toolbox that is able to detect directed dynamical influences among time series. This new open source software implements four entropy estimators in both uniform and non-uniform embedding approaches. *The graphical user interface is ready to be used.* Please download the latest version of MuTE here: http://mutetoolbox.guru/downloads/ The GUI has been developed by Frederik Van de Steen: http://mutetoolbox.guru/frederik-van-de-steen/ ******************* Subscribe to the newsletter if you want to be kept updated about future updates of MuTE or follow the toolbox improvements through - twitter: https://twitter.com/mutetoolbox - facebook: https://www.facebook.com/mutetoolbox Best regards, Alessandro Montalto

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[ACM UMAP] Final Call for Tutorials
by Jie Zhang April 4, 2016

April 4, 2016

Final Call for Tutorials ACM UMAP 2016 invites tutorials that address the interests of its varied audience: people new to the User Modeling, Adaptation and Personalisation researchers and practitioners who wish to learn new technologies, users of Personalized technologies, and representatives of government and funding agencies as well as potential private investors in Personalized technologies. We welcome submissions of tutorial proposals on all major topics related to user modeling and personalisation technologies. We especially solicit proposals for tutorials of the following types: -- Tutorials with a coherent theme providing an introduction to new user modeling technologies, methods, techniques, and trends (e.g. exploiting data-mining and big data analytics for user modeling, evaluation methodologies, data visualizationetc.) -- Tutorials describing the application of user modeling and personalization technologies in specific domains (e.g., health sciences, e-government, e-commerce, cultural heritage, education, internet of things, mobile, music, information retrieval, NLP, etc.). -- Tutorials presenting techniques from other fields that are of relevance for user modeling and personalization research, including social sciences, digital humanities, biomedical or cognitive science, and neuroscience research. Tutorials may focus on theoretical topics, however, we encourage organizers to incorporate hands-on sessions where appropriate. The tutorial should reach a good balance between the topic coverage and its relevance to the community. Tutorials can be half a day (3 hours) or full day (6 hours). Timeline for Tutorials Tutorial proposals due: *April 10, 2016* Notification of acceptance: May 5, 2016 Tutorial Days: 13 July (Wednesday) and/or 17 July (Sunday) 2016 Responsibilities Organizers of accepted tutorials are responsible for preparing the materials for attendees (slide sets, additional teaching material, software installation and usage guides for practical hands-on sessions, etc.) to the Tutorial Chairs. The UMAP 2016 Organizing Committee is responsible for providing publicity for the tutorials as part of the conference publicity activities, and on-site logistical support to the organizers and attendees. General Information In the interest of the overall quality of the conference, the Tutorial Chairs reserve the right to merge tutorials and/or adjust the scope thereof in case a minimum number of registrations is not reached by the early registration deadline. Submission details Tutorial proposals should not exceed 5 pages, and should contain the following information: -- Abstract. 200 words maximum, for inclusion on the UMAP2016 website. -- Tutorial description: objectives of the tutorial and relevance to UMAP2016; information about the scope and level of detail of the material to be covered; intended audiences; learning objectives; practical sessions. -- Tutorial length. The tutorial can be full or half day -- Specify other venues to which the tutorial or part thereof has been or will be presented, in addition to explaining how the current tutorial differs from the other editions. Links to the slides of previous tutorial editions (if applicable) should be included in the proposal. -- Brief professional biography of the presenter(s) indicating previous training and speaking experience (such as teaching and tutorial presentation). All proposals will be reviewed by the tutorial chairs and discussed within the organization committee of the UMAP2016. Submission Proposals should be submitted in PDF format by email to the tutorial chairs at workshopumap2016(a)gmail.com by April 10, 2016. Tutorials Chairs Federica Cena, Università degli Studi di Torino, Italy, email: cena(a)di.unito.it Jie Zhang, Nanyang Technological University, Singapore, email: zhangj(a)ntu.edu.sg

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Call for papers - NIAMS'16
by Tolga Tasdizen April 4, 2016

April 4, 2016

Apologies for multiple receptions. Please share with your colleagues who might be interested. Call for papers Workshop on Neuroscientifc Image Analysis at the Microscopic Scale (NIAMS'16) The Workshop on Neuroscientific Image Analysis at the Microscopic Scale (https://sites.google.com/site/niams2016/ <https://sites.google.com/site/niams2016/>) will be held in conjunction with the MICCAI conference (http://www.miccai2016.org/en/ <http://www.miccai2016.org/en/>) on October 17, 2016 in Athens, Greece. Recent advances in labeling and microscopy techniques have revolutionized our ability to visualize neurons and synapses in living brain tissue. The quantitative analysis of vast amounts of imaging data has become a major bottleneck in neuroscience. This workshop focuses on current challenges in processing and analysis of microscopic images in neuroscience. We invite contributions ranging from novel algorithmic strategies in biomedical image processing to specific examples and solutions to key problems in neuroscience research, including: automatic detection, segmentation, tracking, reconstruction, shape analysis, and modeling of spines, dendrites, and neurons in confocal, two photon, super resolution, and electron microscopy data. We will accept the submission of full papers (8pages, LNCS style), which will be reviewed by the program committee consisting of the organizers and the advisory board. The deadline for paper submission is June 24, 2016. The highest quality papers will be selected for (oral and/or poster) presentation. We plan to publish hardcopy proceedings in Springer LNCS. In addition, we intend to organize a special issue in one of the top journals in the field where extended versions of the selected invited papers of the workshop will be published. Important dates Paper submission: June 24, 2016 Notification of acceptance: July 22, 2016 Workshop: October 17, 2016 Organizers Tolga Tasdizen, University of Utah Devrim Unay, İzmir University of Economics Inbal Israely, Champalimaud Foundation Valentin Nagerl, University of Bordeaux / CNRS If you have any questions, please contact Tolga Tasdizen (tolga(a)sci.utah.edu <mailto:tolga@sci.utah.edu>)

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PhD offer in Paris South: Modeling and steering brain oscillations based on in vivo optogenetics data
by Antoine Chaillet April 3, 2016

April 3, 2016

Antoine Chaillet, Alain Destexhe and Mario Sigalotti are proposing a PhD entitled "Modeling and steering brain oscillations based on in vivo optogenetics data", at the interface between control theory and computational neuroscience. Candidates should contact antoine.chaillet(a)centralesupelec.fr for more information. Description: Neuronal oscillations are ubiquitous in the brain, both in health and disease. Nonetheless, the precise role of these oscillations is still a matter of debate, and the mechanisms by which they are generated are still poorly understood. Technological advances offer unprecedented ways to acquire and influence these oscillations. Electrode arrays and electrodes with dense recording plots now provide excellent spatiotemporal resolution of local brain activity. Moreover, the recent advent of optogenetics is revolutionizing the way of stimulating brain structures. The combination of electrophysiological recordings and optogenetics is thus particularly appealing to decipher the mechanisms of oscillation generation, their role in brain functioning, and the development of closed-loop strategies to steer brain oscillations (especially pathological ones). This project aims at developing and validating ad hoc methodologies to model, identify, analyze and control brain oscillations with these experimental tools. The challenges in that direction are numerous due to the nonlinear and spatiotemporal nature of the processes involved. To address these challenges, this project proposes to adapt or develop methodologies from control theory to the brain dynamics specificities. The performance of the developed methodologies will be confronted to experimental data of pathological oscillations linked to parkinsonian symptoms, that were collected on healthy and parkinsonian primates under optogenetics in the ANR project SynchNeuro. The aim of this PhD thesis is to develop a methodological framework, based on control engineering, to address three challenges: 1) development of a spatiotemporal model of specific brain oscillations, whose parameters are identified based on experimental data 2) formal analysis of brain oscillations onset and characterization of their dynamics in terms of magnitude, frequency and phase 3) development of closed-loop photostimulation strategies to disrupt, attenuate, or steer brain oscillations. Supervision: The PhD thesis will be supervised by Antoine Chaillet (L2S), in collaboration with Alain Destexhe (UNIC) and Mario Sigalotti (CMAP). It will take place in Gif sur Yvette (south of Paris), France. Sought candidate: We are looking for a brilliant motivated student, eager to work on an interdisciplinary topic. Strong background in dynamical systems is needed, as well as interest for theoretical developments. Experience in identification based on experimental data, or numerical simulations would be appreciated. No French ability is required. Antoine Chaillet Associate Professor Univ. Paris Sud 11 - L2S - CentraleSupélec 3, rue Joliot Curie 91192 - Gif sur Yvette, France +33 1 69 85 13 83

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EPFL: PhD student position in neuromechanical models of vertebrate locomotion
by Auke Ijspeert April 2, 2016

April 2, 2016

PhD student position in neuromechanical models of vertebrate locomotion http://biorob.epfl.ch/openings The Biorobotics laboratory (Biorob, http://biorob.epfl.ch/) at EPFL (Lausanne, Switzerland) at EPFL (Lausanne, Switzerland) anticipates to have one open PhD studentship in computational neuroscience and biorobotics. The goal of the project is to develop neuromechanical models of vertebrate locomotion, together with Marc-Olivier Gewaltig (computational neuroscientist) and Gregoire Courtine (neuroscientist). *The neuromechanical models will include numerical models of spinal cord circuits coupled to biomechanical models of the body. The first target animal will be the mouse; depending on progress, human models might be developed in a second stage. The spinal cord models might also be tested and validated in some of the quadruped robots developed by the Biorobotics laboratory. The position will be fully funded thanks to a grant from the Human Brain Project. EPFL is one of the leading Institutes of Technology in Europe and offers internationally competitive salaries and research infrastructure. Requirements: Candidates need to have a Master degree in a field related to computational neuroscience e.g. in physics or computer science. The ideal candidate for this position should have a strong math background (e.g. in dynamical systems), good programming skills, and interest/expertise in modeling neural circuits and biomechanical systems, and in locomotion. How to apply for the position: Step 1: The position is only open to applicants who have been accepted by the EPFL doctoral school (see http://phd.epfl.ch/) The first step is therefore to fill the applications for one of the relevant EPFL doctoral programs in robotics (http://phd.epfl.ch/EDPR) or neuroscience (http://phd.epfl.ch/neuroscience) Step 2: In parallel to step 1, or once accepted by one of the doctoral programs (please specify which doctoral program and the date of acceptance), the application to the position should be sent by email to Prof. Auke Ijspeert and consist of a motivation letter (explaining why you are interested in the project, and why you feel qualified for it) and a copy of the doctoral program application. Informal inquiries about the relevance of an application can be sent to auke.ijspeert(a)epfl.ch (e.g. before or while submitting an application to the doctoral school), but responses can be slow because of a heavy schedule and a filled mail box. Deadline and starting date: Applications will be considered continuously until the position is filled. The starting date is between April and September 2016 (the sooner the better). Note that the doctoral program in robotics (EDRS) has a deadline on April 15 2016, and the one in neuroscience (EDNE) on May 1st 2016. Contact: Information concerning the type of research carried out by the group can be found at http://biorob.epfl.ch/. You should send your application and any inquiry by email to: Prof. Auke Jan Ijspeert <http://biorob.epfl.ch/page38158.html>, auke.ijspeert(a)epfl.ch <mailto:auke.ijspeert@epfl.ch> -- ----------------------------------------------------------------- Prof. Auke Jan Ijspeert Biorobotics Laboratory EPFL-STI-IBI-BIOROB EPFL, Ecole Polytechnique Fédérale de Lausanne Station 9, CH 1015 Lausanne, Switzerland Office: ME D1 1226 Tel: +41 21 693 2658 Fax: +41 21 693 3705 www: http://biorob.epfl.ch Email: Auke.Ijspeert(a)epfl.ch -----------------------------------------------------------------

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[IEEE ICCI*CC'16:] IEEE ICCI*CC’16 Deadline is Extended to April 30 @Stanford Univ. – Computational Intelligence/Cognitive Informatics/Cognitive Computing
by Yingxu Wang April 2, 2016

April 2, 2016

Dear Colleagues, Upon numerous requests and due to the recent system instable status of the submission site, deadline for paper submission to IEEE ICCI'CC’16 (15th IEEE International Conference on Cognitive Informatics & Cognitive Computing) has been extended to April 30, 2016 (http://www.ucalgary.ca/icci_cc/iccicc-16) Workshops, special sessions proposals, and short papers are welcome. The Proceedings of ICCI*CC'16 will be published by IEEE CS Press. Papers accepted in ICCI*CC’16 will be indexed by EI. Extended versions of selected papers will be published in several EI or SCI indexed journals. Full papers are expected to be around 5-8 pages in IEEE double column format. Short papers (3-4 pages) that report industrial experience, case studies, work in progress, or graduate students’ research are also welcome. Paper submission site is at: https://easychair.org/conferences/?conf=iccicc2016. The conference will be featured by four keynote speeches such as those of Prof. Lotfi A. Zadeh with UC Berkeley and Prof. Bernard Widrow with Stanford University, that highlight cutting-edge theories and novel technologies for cognitive systems and computational intelligence inspired by the brain. We look forward to meeting you at Stanford University during Aug. 22-23, 2016. Sincerely, IEEE ICCI*CC'16 Co-Chairs GENERAL CO-CHAIRS: Bernard Widrow (Stanford) and Yingxu Wang (UofC, Canada) PROGRAM CO-CHAIRS: Newton Howard (MIT) and Kostas Plataniotis (Univ. of Toronto, Canada)_______________________________________________ This message was sent to all subscribers of ieeeicci13-L To unsubscribe, see instructions at: http://www.ucalgary.ca/it/email/mailman E-mail: ieeeicci13-L(a)mailman.ucalgary.ca Homepage: http://mailman.ucalgary.ca/mailman/listinfo/ieeeicci13-l

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Quantitative Analysis of Neuroanatomy special issue / ebook
by Stephen Eglen April 2, 2016

April 2, 2016

On behalf of all the editors, I am pleased to announce the release of our special issue on the Quantitative Analysis of Neuroanatomy. All articles have been published in Frontiers in Neuroanatomy. As of March 2016, all papers are now freely available as an Ebook either in PDF or EPUB format. The aim of this Research Topic is to examine theoretical and experimental work directed at a detailed and comprehensive quantitative understanding of neuroanatomy. Integrating such knowledge with functional data should provide a more complete understanding of how the nervous system in different animal species is organized to generate appropriate behaviour. Home page: http://journal.frontiersin.org/researchtopic/2028/quantitative-analysis-of-… Blog page: http://sje30.github.io/post/qan/ Table of contents Editorial: Quantitative Analysis of Neuroanatomy Julian M. L. Budd, Hermann Cuntz, Stephen J. Eglen and Patrik Krieger. A comparison of manual neuronal reconstruction from biocytin histology or 2-photon imaging: morphometry and computer modeling Arne V. Blackman, Stefan Grabuschnig, Robert Legenstein and P. Jesper Sjöström. Automated computation of arbor densities: a step toward identifying neuronal cell types Uygar Sümbül, Aleksandar Zlateski, Ashwin Vishwanathan, Richard H. Masland and H. Sebastian Seung. Functional connectivity estimation over large networks at cellular resolution based on electrophysiological recordings and structural prior Simona Ullo, Thierry R. Nieus, Diego Sona, Alessandro Maccione, Luca Berdondini and Vittorio Murino. Axonal and dendritic density field estimation from incomplete single-slice neuronal reconstructions Jaap van Pelt, Arjen van Ooyen and Harry B. M. Uylings. Slicing, sampling, and distance-dependent effects affect network measures in simulated cortical circuit structures Daniel C. Miner and Jochen Triesch A workflow for the automatic segmentation of organelles in electron microscopy image stacks Alex J. Perez, Mojtaba Seyedhosseini, Thomas J. Deerinck, Eric A. Bushong, Satchidananda Panda, Tolga Tasdizen and Mark H. Ellisman. Three-dimensional distribution of cortical synapses: a replicated point pattern based analysis Laura Anton-Sanchez, Concha Bielza, Angel Merchán-Pérez, José-Rodrigo Rodríguez, Javier DeFelipe and Pedro Larrañaga. The patterning of retinal horizontal cells: normalizing the regularity index enhances the detection of genomic linkage Patrick W. Keeley and Benjamin E. Reese Statistical analysis and data mining of digital reconstructions of dendritic morphologies Sridevi Polavaram, Todd A. Gillette, Ruchi Parekh and Giorgio A. Ascoli Towards a “canonical” agranular cortical microcircuit Sarah F. Beul and Claus C. Hilgetag Generation of dense statistical connectomes from sparse morphological data Robert Egger, Vincent J. Dercksen, Daniel Udvary, Hans-Christian Hege and Marcel Oberlaender Context-aware modeling of neuronal morphologies Benjamin Torben-Nielsen and Erik De Schutter The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model Jugoslava Aćimović, Tuomo Mäki-Marttunen and Marja-Leena Linne Homeostatic structural plasticity can account for topology changes following deafferentation and focal stroke Markus Butz, Ines D. Steenbuck and Arjen van Ooyen Parametric Anatomical Modeling: a method for modeling the anatomical layout of neurons and their projections Martin Pyka, Sebastian Klatt and Sen Cheng Saltatory conduction in unmyelinated axons: clustering of Na+ channels on lipid rafts enables micro-saltatory conduction in C-fibers Ali Neishabouri and A. Aldo Faisal

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Three neuroinformatics positions in ferret brain research
by Rembrandt Bakker April 2, 2016

April 2, 2016

(apologies for any cross-postings) In a collaboration between University Medical Center Eppendorf (Hamburg, Germany), the Donders Institute (Radboud University Nijmegen, The Netherlands), and Institute Pasteur (Paris, France), three positions at the postdoc level are available. The research focuses on studying the architecture and connectivity of the ferret brain, encompassing research on architecture and morphology (particularly, cortical folding) of the developing brain as well as the collation and analysis of brain connectivity in the adult brain. The project will make available a public data set of MRI and microscopic images of the developing ferret brain, together with tools for the online annotation of these data. The Nijmegen and Paris components of the research both develop the tools and perform an initial analysis of the MRI and microscopy data. The Hamburg component continues the development of a public online database of brain connectivity in conjunction with the development of an atlas of the adult ferret brain. The three positions are described in detail below. 1. Position at Radboud University. The full text of this position is available here: https://www.academictransfer.com/employer/RUN/vacancy/32519/lang/en/ The summary is: "We are looking for a highly motivated postdoctoral candidate to contribute to a neuroinformatics platform that allows researchers worldwide to jointly work on the creation of brain atlases. The scientific use case is to build a detailed developmental brain atlas for the ferret. The ferret is special in that the folding patterns of its brain develop after birth, so that the folding process can be studied on the basis of a series of combined MRI and microscopy data sets. Data will be provided by our partner Dr. Roberto Toro from Institute Pasteur in Paris, who is also the creator of the platform prototype (www.siphonophore.org/microdraw) You will work together with Dr. Rembrandt Bakker who leads the Scalable Brain Atlas project (www.scalablebrainatlas.org) The project is funded by the Netherlands Organization for Scientific Research (NWO) and its French counterpart and is part of a FLAG-ERA funding scheme that falls under the umbrella of the Human Brain Project. Further inquiries: r.bakker(a)fz-juelich.de, p.tiesinga(a)science.ru.nl 2. Position at University Medical Center Eppendorf, Hamburg, Germany We seek a Researcher in Neuroinformatics at the predoctoral or postdoctoral level, to curate an online database of ferret brain architecture and connectivity. The position is available immediately and runs until 30th June 2019. Further extensions are possible. The researcher will be expected to continue the conceptual and technical development of the ferretome.org database system, and supervise the population of the database with data collated from the literature as well as newly performed anatomy experiments. Moreover, the researcher will work on the integration of the ferretome with online atlases of the ferret brain. The researcher will be based at the Department of Computational Neuroscience, University Medical Center Eppendorf, Hamburg, Germany. The position is part of the Collaborative Research Center 936 (sfb936.net) âMulti-site communication in the brain" and would suit a researcher with background in computer science or biology. In any case, the position requires strong computer skills, particularly in database systems, high proficiency in written and spoken English and great curiosity. The researcher needs to integrate well with a highly multinational, multidisciplinary team at the Department of Computational Neuroscience as well as the Research Center 936. For researchers at the predoctoral level, the position offers the opportunity for obtaining a PhD degree. For further inquiries contact Prof. Claus C. Hilgetag, PhD: c.hilgetag(a)uke.de. 3. Position at Institute Pasteur This position at the postdoctoral level will commence after the microscopy data for the developmental ferret atlas has become available. The candidate should have a background in computational neuroanatomy or neuroinformatics, and preferrably have experience with online development and data visualisation. You will be working together with OphÃ©lie Foubet, who is doing a PhD that focuses on the mechanics of neocortical development. Contact Roberto Toro: roberto.toro(a)gmail.com for details about this position. -- Dr. R. Bakker Forschungszentrum JÃ¼lich / Radboud University Nijmegen +31645774665 ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

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Berkeley course in mining and modeling neuroscience data, July 11-22, 2016
by Jeff Teeters April 1, 2016

April 1, 2016

Call for applications: We invite applicants to the 2016 summer course in "Mining and modeling of neuroscience data" to be held July 11-22 at UC Berkeley. A description of the course is below and also at: http://crcns.org/course Application deadline is April 30. ----- Berkeley summer course in mining and modeling of neuroscience data July 11-22, 2016 Redwood Center for Theoretical Neuroscience, UC Berkeley Organizers: Fritz Sommer, Bruno Olshausen & Jeff Teeters (HWNI, UC Berkeley) Scope This course is for students and researchers with backgrounds in mathematics and computational sciences who are interested in applying their skills toward problems in neuroscience. It will introduce the major open questions of neuroscience and teach state-of–the-art techniques for analyzing and modeling neuroscience data sets. The course is designed for students at the graduate level and researchers with background in a quantitative field such as engineering, mathematics, physics or computer science who may or may not have a specific neuroscience background. The goal of this summer course is to help researchers find new exciting research areas and at the same time to strengthen quantitative expertise in the field of neuroscience. The course is sponsored by the National Institute of Health, the National Science Foundation from a grant supporting activities at the data sharing repository CRCNS.org, and the Helen Wills Neuroscience Institute at UC Berkeley. Format The course is “hands on” in that it will include exercises in how to use and modify existing software tools and apply them to data sets, such as those available in the CRCNS.org repository. Course Instructors Robert Kass, Carnegie Mellon University, Pittsburgh Maneesh Sahani, Gatsby Unit, University College London Odelia Schwartz, University of Miami Frederic Theunissen, University of California Berkeley Joshua Vogelstein, Johns Hopkins University Course Moderators Fritz Sommer and Jeff Teeters, Redwood Center for Theoretical Neuroscience. Speakers To complement the main course instruction there will be lectures in the evenings by local Berkeley and UCSF neuroscientists presenting their research using quantitative approaches. Requirements Applicants should be familiar with linear algebra, probability, differential and integral calculus and have some experience using MatLab and Python. Each student should bring a laptop with both MatLab and Python installed. Cost There is no cost to attend. Non-local attendees will be reimbursed for qualifying travel and food expenses if receipts are provided. Housing Rooms in a hotel within walking distance to campus will be provided for those attendees who need accommodations. Food Breakfast and some dinners will be provided to all participants as a group. Non-local attendees can purchase food at local stores or restaurants and be reimbursed. How to apply To apply, submit the online form linked from: http://crcns.org/course. A curriculum vitae and a letter of recommendation are required. The course is limited to 25 students. Deadlines Applications must be received by the end of April. Notifications of acceptance will be given by May 15. Questions Questions about the course can be sent to course [at] crcns.org. Topics covered (subject to change): Basic approaches: - The problem of neural coding - Spike trains, point processes, and firing rate - Statistical thinking in neuroscience - Theory of model fitting / regularization / hypothesis testing - Overview of stimulus-response function models - Theory of model fitting / regularization / hypothesis testing - Bayesian methods - Spike sorting - Estimation of stimulus-response functionals: regression methods, spike-triggered covariance, - Variance analysis of neural response - Estimation of SNR. Coherence Information theoretic approaches: - Information transmission rates - Scene statistics approaches and neural modeling Techniques for analyzing multiple-electrode and optical neural recordings: - Event sorting in electrophysiology and optical imaging - Optophysiology cell detection - Sparse coding/ICA methods, vanilla and methods including statistical models of nonlinear dependencies - Methods for assessing functional connectivity - Statistical issues in network identification - Low-dimensional latent dynamical structure in network activity–Gaussian process factor analysis/newer methods Analyzing structural data: - Histology cell detection - Statistical connectomics Neuroinformatics topics: - Petascale data storage, exploration, parsing and analysis - Introduction into Neurodata Without Borders data format for Neurophysiology

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Neuroinformatics/Modeling Postdoc Available
by Sharon Crook March 31, 2016

March 31, 2016

ARIZONA STATE UNIVERSITY An Equal Opportunity/Affirmative Action Employer Postdoctoral position in Computational Neuroscience and Neuroinformatics (Job #11446) We are soliciting applications for a postdoctoral position in the Laboratory for Informatics and Computation in Open Neuroscience at Arizona State University. This laboratory, jointly supervised by Dr. Sharon Crook and Dr. Rick Gerkin, focuses on developing resources for the community for describing, validating and sharing computational models in neuroscience. In addition, lab personnel conduct empirical and modeling studies in order to investigate fundamental questions in neuroscience. The successful candidate will contribute to the development and use of tool chains for model validation and model exchange that revolve around NeuronUnit and NeuroML. The postdoctoral researcher also will have the opportunity to choose the direction of their own modeling studies. Applicants must provide evidence of excellence in sustainable software development, experience in applications in neuroscience, and should also be highly independent, with a strong propensity for interdisciplinary research. Candidates must hold a PhD in neuroscience, computer science, applied mathematics, computational neuroscience or a related discipline by time of appointment and be highly motivated and creative. Experience with some combination of Python, XML, MySQL, Ruby on Rails, and NEURON is desirable. Named the #1 Most Innovative University in the US, Arizona State University offers an exciting research environment in a unique setting. ASU is located in Tempe, Arizona, which offers many rich cultural and outdoor opportunities with access to mountains and canyons visited by people from around the world. All applications must be submitted online through mathjobs at https://www.mathjobs.org/jobs/jobs/8375 and must include the following: 1) A detailed CV 2) Two recommendation letters 3) A statement of research interest Any questions should be sent by email to Dr. Sharon Crook (sharon.crook(a)asu.edu) and Dr. Rick Gerkin (rgerkin(a)asu.edu) Initial review of applications began January 15, 2016. Applications are reviewed every two weeks until the search is closed. (Search currently continues to be open!) Arizona State University is a VEVRAA Federal Contractor and an Equal Opportunity/Affirmative Action Employer. All qualified applicants will be considered without regard to race, color, religion, national origin, protected veteran status, or any other basis protected by law. https://www.asu.edu/aad/manuals/acd/acd401.html https://www.asu.edu/titleIX/.

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FINAL REMINDER: Call For Participation: 2016 Telluride Neuromorphic Cognition Engineering Workshop
by Ralph Etienne-Cummings March 31, 2016

March 31, 2016

Please see below: *Telluride Neuromorphic Cognition Engineering Workshop 2016 <https://neuromorphs.net/nm/wiki/2016#TellurideNeuromorphicCognitionEngineer…>* Sunday Jun 26th - Saturday July 16th, 2016 - * Telluride Elementary School,Telluride, Colorado * *Applications to the 2016 Telluride Neuromorphic Cognition Engineering Workshop* 2016 NEUROMORPHIC COGNITION ENGINEERING WORKSHOP <https://neuromorphs.net/nm/wiki/2016> <https://neuromorphs.net/nm/wiki/2016>https://neuromorphs.net/nm/wiki/2016 Sunday June 26th - Saturday July 16th, 2016, Telluride, Colorado *IMPORTANT DATES FOR APPLICATION (Instructions are at the bottom of the page)* Application Website Open - 16th February, 2016 Applications Due - 2nd April, 2016 Notification of Acceptance - 15th April, 2016 *Application website: <https://academicjobsonline.org/ajo/jobs/7040> <https://academicjobsonline.org/ajo/jobs/7040>https://academicjobsonline.org/ajo/jobs/7040 <https://academicjobsonline.org/ajo/jobs/7040>.* *GOALS:* Neuromorphic engineers design and fabricate artificial neural systems whose organizing principles are based on those of biological nervous systems. Over the past 18 years, this research community has focused on the understanding of low-level sensory processing and systems infrastructure; efforts are now expanding to apply this knowledge and infrastructure to addressing higher-level problems in perception, cognition, and learning. In this 3-week intensive workshop and through the Institute for Neuromorphic Engineering (INE), the mission is to promote interaction between senior and junior researchers; to educate new members of the community; to introduce new enabling fields and applications to the community; to promote on-going collaborative activities emerging from the Workshop, and to promote a self-sustaining research field. *FORMAT:* The three week summer workshop will include background lectures on systems and cognitive neuroscience (in particular sensory processing, learning and memory, motor systems and attention), practical tutorials on emerging hardware design, mobile robots, hands-on projects, and special interest groups. Participants are required to take part and possibly complete at least one of the projects proposed. They are furthermore encouraged to become involved in as many of the other activities proposed as interest and time allow. There will be two lectures in the morning that cover issues that are important to the community in general. Because of the diverse range of backgrounds among the participants, some of these lectures will be tutorials, rather than detailed reports of current research. These lectures will be given by invited speakers. Projects and interest groups meet in the late afternoons, and after dinner. In the early afternoon there will be tutorials on a wide spectrum of topics, including analog VLSI, mobile robotics, vision and auditory systems, central-pattern-generators, selective attention mechanisms, cognitive systems, etc. *2016 TOPIC AREAS:* Decoding Multi-Modal Effects on Auditory Cognition: Edmund Lalor (Trinity College Dublin), Alain de Cheveigne (UPMC, France), Malcolm Slaney (Google), and Shihab Shamma (UM-College Park) Spike-Based Cognition in Active Neuromorphic Systems: Ryad Benjamin Benosman (UPMC, Paris), Cornelia Fermuller (Univ. of Maryland), Garrick Orchard (National University of Singapore), Michele Rucci (Boston University), and Bert Shi (Hong Kong University of Science and Technology) Neuromorphic Path Planning for Robots in a Disaster Response Scenario: Jeff Krichmar (University of California, Irvine) and Jennifer Hasler (Georgia Institute of Technology) Neuromorphic Tactile Sensing:James Wright (MARCS Institute, Western Sydney University), Jonathan Tapson (MARCS Institute, Western Sydney University), and Nitish V. Thakor (SINAPSE, Singapore University for Neurotechnology) Computational Neuroscience (invitational mini-workshop): Terry Sejnowski (Salk Institute) *LOCATION AND ARRANGEMENTS:* The summer school will take place in the small town of Telluride, 9000 feet high in southwest Colorado, about 6 hours drive away from Denver (350 miles). There are several small airports (e.g. Montrose) close to Telluride. All facilities within the beautifully renovated public school building are fully accessible to participants with disabilities. Participants will be housed in ski condominiums, within walking distance of the school. Participants are expected to share condominiums. The workshop is intended to be very informal and hands-on. Participants are not required to have had previous experience in analog VLSI circuit design, computational or machine vision, systems level neurophysiology or modeling the brain at the systems level. However, we strongly encourage active researchers with relevant backgrounds from academia, industry and national laboratories to apply, in particular if they are prepared to work on specific projects, talk about their own work or bring demonstrations to Telluride (e.g. robots, chips, software). Wireless internet access will be provided. Technical staff present throughout the workshops will assist with software and hardware issues. We encourage participants to bring along their personal laptop. No cars are required. Given the small size of the town, we recommend that you do not rent a car. Bring hiking boots, warm clothes, rain gear, and a backpack, since Telluride is surrounded by beautiful mountains. Unless otherwise arranged with one of the organizers, we expect participants to stay for the entire duration of this three week workshop. *FINANCIAL ARRANGEMENTS:* Notification of acceptances will be mailed out around the April 15th, 2016. The Workshop covers all your accommodations and facilities costs for the 3 weeks duration. You are responsible for your own travel to the Workshop. Registration Fees: For expenses not covered by federal funds, a Workshop registration fee is required. The fee is $1500 per participant for the 3-week Workshop. This is expected from all participants at the time of acceptance. Accommodations: The cost of a shared condominium, typically a bedroom in a shared condo for senior participants or a shared room for students, will be covered for all academic participants. Upgrades to a private rooms or condos will cost extra. Participants from National Laboratories and Industry are expected to pay for these condominiums. The 2016 Workshop and Summer School on Neuromorphic Engineering is sponsored by the National Science Foundation, Institute of Neuromorphic Engineering, University of Maryland - College Park, Institute for Neuroinformatics â€“ University of Zurich and ETH Zurich, Georgia Institute of Technology, Johns Hopkins University, Boston University, University of Western Sydney and the Salk Institute. *Workshop Directors:* Cornelia FermÃ¼ller (University of Maryland) Ralph Etienne-Cummings (Johns Hopkins Univ.) Shih-Chii Liu (University of Zurich and ETH Zurich) Timmer Horiuchi (University of Maryland) Katalin Gotthard (University of Arizona) Michael Pfeiffer (University of Zurich and ETH Zurich) Francisco Barranco (University of Granada) Former 2007-2013 Workshop Director: Tobi Delbruck (University of Zurich and ETH Zurich) Workshop Advisory Board: Andreas Andreou (Johns Hopkins University) Andre van Schaik (University Western Sydney, Australia) Avis Cohen (University of Maryland) Barbara Shinn-Cunningham (Boston University) Giacomo Indiveri (Institute of Neuroinformatics, University of Zurich and ETH Zurich) Jonathan Tapson (University Western Sydney, Australia) Malcolm Slaney (Google) Jennifer Hasler (Georgia Institute of Technology) Rodney Douglas (Institute of Neuroinformatics, University of Zurich and ETH Zurich) Shihab Shamma (University of Maryland) Tobi Delbruck (Institute of Neuroinformatics, University of Zurich and ETH Zurich) *HOW TO APPLY:* Applicants should be at the level of graduate students or above (i.e. postdoctoral fellows, faculty, research and engineering staff and the equivalent positions in industry and national laboratories). We actively encourage women and minority candidates to apply. Anyone interested in proposing or discussing specific projects should contact the appropriate topic leaders directly. The application website is (after February 16th, 2016): <https://academicjobsonline.org/ajo/jobs/7040> <https://academicjobsonline.org/ajo/jobs/7040> https://academicjobsonline.org/ajo/jobs/7040. Application information needed: Contact email address. First name, Last name, Affiliation, valid e-mail address. Curriculum Vitae (a short version, please). One page summary of background and interests relevant to the workshop, including possible ideas for workshop projects. Please indicate which topic areas you would most likely join. Two letters of recommendation (uploaded directly by references). Applicants will be notified by e-mail. 16th February, 2016 - Applications accepted on website 2nd April, 2016 - Applications Due 15th April, 2016 - Notification of Acceptance

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IEEE ICDL-EPIROB 2016 - Extended deadline ( April 15th)
by Arnaud Blanchard March 30, 2016

March 30, 2016

Extended Deadline Papers and Workshops Submission ( Friday, April 15th ) Due to several requests, we are extending the deadline of two weeks, till April 15th ! = IEEE ICDL-EPIROB 2016 = The Sixth Joint IEEE International Conference on Development and Learning and on Epigenetic Robotics Cergy-Pontoise / Paris, France September 19-22th, 2016 http://www.icdl-epirob.org <http://www.icdl-epirob.org/> Updates about : * Venue / Lodging == Conference description IEEE ICDL-Epirob is the premier forum for advances in epigenetic robotics and developmental psychology with the focus on learning and development in biological and artificial systems. This single-track conference brings together researchers from cognitive sciences, computer sciences, and robotics to explore their shared interests in autonomous learning and development. The design and study of both robotic and simulated embodied and situated computational models that are inspired by the principles of human development will be presented at the conference. A special event -- the «Babybot challenge» — will see renowned psychologists challenging engineers and modelers in how to use the tools of developmental robotics to replicate and extend the key findings. This year, thanks to special funding from Paris-Seine University, six renowned invited speakers will cover the different facets of the conference. We invite you to participate in IEEE ICDL-Epirob by sharing your research, insights, experience, and enthusiasm. A social event “on the paths of the impressionists” will allow you to discover the old city of Pontoise and Auvers sur Oise where Vincent Van Gogh painted some of his most famous masterpieces. Excursions to Paris, Versailles and Giverny will be proposed for spouses. == Keynote speakers * Tamim Asfour (http://h2t.anthropomatik.kit.edu/english/21_66.php <http://h2t.anthropomatik.kit.edu/english/21_66.php>) * Karl Friston (http://www.fil.ion.ucl.ac.uk/~karl <http://www.fil.ion.ucl.ac.uk/~karl>) * Julie Grezes (http://iec-lnc.ens.fr/social-cognition-group/membres-100/faculty-177/grezes… <http://iec-lnc.ens.fr/social-cognition-group/membres-100/faculty-177/grezes…>) * Tony Prescott (https://www.sheffield.ac.uk/psychology/staff/academic/tony-prescott <https://www.sheffield.ac.uk/psychology/staff/academic/tony-prescott>) * Daniela Corbetta (http://web.utk.edu/~infntlab <http://web.utk.edu/~infntlab>) == Call for submissions of workshops and papers We invite submissions for this exciting window into the future of developmental sciences. Submissions which establish novel links between brain, behavior and computation are particularly encouraged. == Topics of interest include (but are not limited to): * the development of perceptual, motor, cognitive, emotional, social, and communication skills in biological systems and robots; * embodiment; * general principles of development and learning; * interaction of nature and nurture; * sensitive/critical periods; * developmental psychology; * developmental stages; * grounding of knowledge and development of representations; * architectures for cognitive development and open-ended learning; * neural plasticity; * statistical learning; * reward and value systems; * intrinsic motivations, exploration and play; * interaction of development and evolution; * use of robots in applied settings such as autism therapy; * epistemological foundations and philosophical issues. Any of the topics above can be simultaneously studied from the neuroscience, psychology or modeling/robotic point of view. == Submissions will be accepted in several formats: 1. Full six-page paper submissions: Accepted papers will be included in the conference proceedings and will be selected for either an oral presentation or a featured poster presentation. Featured posters will have a 1 minute "teaser" presentation as part of the main conference session and will be showcased in the poster sessions. 2. Two-page poster abstract submissions: To encourage discussion of late-breaking results or for work that is not sufficiently mature for a full paper, we will accept 2-page abstracts. These submissions will be included in the conference proceedings. Accepted abstracts will be presented during poster sessions. 3. Tutorials and workshops: We invite experts in different areas to organize either a tutorial or a workshop to be held on the first day of the conference. Tutorials are meant to provide insights into specific topics as well as overviews that will inform the interdisciplinary audience about the state-of-the-art in child development, neuroscience, robotics, or any of the other disciplines represented at the conference. A workshop is an opportunity to present a topic cumulatively. Workshop can be half- or full-day in duration including oral presentations as well as posters. Submission format: two pages. == Call for Tutorials and Workshops We invite experts in different areas to organize a tutorial or workshop, which will be held on the first day of the conference ( September 19th 2016 ). Participants in tutorials and workshops are asked to register for the main conference. Tutorials are meant to provide insights into specific topics as well as overviews that will inform the interdisciplinary audience about the state-of-the-art in child development, neuroscience, robotics, or any of the other disciplines represented at the conference. A workshop is an opportunity to present a topic cumulatively. Workshops can be half- or full-day in duration including oral presentations as well as posters. We would like to receive applications in pdf format for organizing a workshop with the following informations: title / workshop or tutorial organiser's name, research structure and coordinate (email) how many invited presentations/ and 'open' presentations is there a call for posters? what is the timetable website address ? Proposals should be sent to Sofiane Boucenna sofiane.boucenna(a)u-cergy.fr <mailto:sofiane.boucenna@u-cergy.fr>, Verena Hafner hafner(a)informatik.hu-berlin.de <mailto:hafner@informatik.hu-berlin.de> & Alex Pitti alexandre.pitti(a)u-cergy.fr <mailto:alexandre.pitti@u-cergy.fr> == Important dates * April 15th, 2016, paper and workshops submission EXTENDED DEADLINE * June 1st, 2016, author notification * July 1st, 2016, final version (camera ready) due * September 19th-22nd, 2016, conference == Program committee General chairs: * Minoru Asada Osaka (Japan). * Philippe Gaussier, Cergy-Pontoise (France). Program chairs: * Verena Hafner, Berlin (Germany) * Alexandre Pitti, Cergy-Pontoise (France) Bridge chairs: • David Cohen, Paris (France) • Mathew Schlesinger, Southern Illinois (USA) Publication chairs: * Sofiane Boucenna, Cergy-Pontoise (France) Publicity chairs: * Arnaud Blanchard, Cergy-Pontoise (France) * Manuel Lopes, Bordeaux (France) * Yulia Sandamirskaya, Zürich (Switzerland) Local chairs: * Pierre Andry, Cergy-Pontoise (France) * Nicolas Cuperlier, Cergy-Pontoise (France) Finance chairs: * Ghilès Mostafaoui, Cergy-Pontoise (France) == Registration fees* Price for : advanced / late registration IEEE Member 380€ / 460€ Non-member 480€ / 560€ IEEE Student member 190€ / 240€ Student non-member 260€ / 280€ IEEE Life member 190€ / 240€ (*) This price includes the social dinner. The registration form and the early registration deadline are coming soon. == Lodging == We are glad to inform you that we have obtained special rates for accommodation during the ICDL-EPIROB 2016 conference (19-22 sept) : All information (english) : http://www.olivarius-cergy.com/en/ <http://www.olivarius-cergy.com/en/> Location : approx. 800m from the conference site (University of Cergy-Pontoise) Pictures : http://www.olivarius-cergy.com/en/accomodation.html <http://www.olivarius-cergy.com/en/accomodation.html> Conference special rates : * Studio :99€ /night (instead of 124€) - * One-bedroom apartment 40m² :109€ /night (instead of 149€) - * Two-bedroom apartment 70m² :115€ /night (instead of 184€) * Two bedroom apartment deluxe 120m² :180€ /night (instead of 274€) * Two bedroom apartment duplex with terrasse 100m² : 160€ght (instead of 284€) Please note that the rates are "per night", whatever the number of persons. Studio are ok for 1 to 2 persons, while apartments are ok for 1 to 4 persons. HIn order to book, please go to : http://reservation.consolemyroom.com/front126407/front.do?m=booking&custid=… <http://reservation.consolemyroom.com/front126407/front.do?m=booking&custid=…> and apply the discount code : EPIROB2016 when booking Problems for booking ? Please contact us at : icdlepirob2016(a)ensea.fr <mailto:icdlepirob2016@ensea.fr>

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3rd Model-based Neuroscience Summer School, Amsterdam
by Jane Neumann March 30, 2016

March 30, 2016

Dear colleagues, June 27-July 1 2016 will see the third Model-Based Neuroscience Summer School, hosted at the University of Amsterdam.   The summer school will provide students with hands-on experience in both cognitive modeling using diffusion and accumulator models and simple neuroscience methods. The program includes a series of lectures on model-based decision neuroscience in both humans and non-human primates from experts including Michael Shadlen, Gordon Logan, Andrew Heathcote, Uta Noppeney, Brandon Turner, Jane Neumann, and Birte Forstmann.    *The summer school is aimed at PhD students and early postdocs who wish to combine cognitive modeling with experimental and theoretical neuroscience research. Students should be familiar with general programming concepts and state in their application which programming languages and software packages they typically use. * The summer school will be co-located at the University of Amsterdam with a one-day symposium on model-based neuroscience of mind wandering, to be held on July 2 2016. The symposium will involve a series of lectures from experts in the scientific study of mind wandering with a focus on model-based neuroscience approaches. The symposium will provide a unique opportunity to see how the concepts introduced in the summer school can provide insight on an important research topic. *Application and registration:*  The registration fee for the summer school is 500 euro. The registration fee for combined attendance at the summer school and the one-day mind wandering symposium is 600 euro. We ask that students make their own housing arrangements. Space is limited, therefore we ask that you provide a statement of interest. We will select students based on the relevance of the summer school to their research. The application deadline is 22 April 2016.   More information about the summer school including teachers, preliminary program and application can be found atwww.modelbasedneuroscience.com We look forward to welcoming you in Amsterdam!   Organization:  Jane Neumann, University Medical Center Leipzig and MPI for Human Cognitive and Brain Sciences Leendert van Maanen, University of Amsterdam  Birte Forstmann, University of Amsterdam Guy Hawkins, University of Amsterdam Andrew Heathcote, University of Tasmania

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Gordon Research Seminar on Neurobiology of Cognition
by Sarah Heilbronner March 30, 2016

March 30, 2016

Dear computational neuroscientists, We would like to invite you to apply to the Gordon Research Seminar (GRS) on Neurobiology of Cognition. The GRS is a unique forum for graduate students and postdocs to present and exchange new data and cutting-edge ideas. Following the GRS, attendees are encouraged to stay for the main Gordon Research Conference (GRC). More information, as well as an online application, can be found here: https://www.grc.org/programs.aspx?id=16594 Please note that, in order to be considered for a talk, abstract must be submitted by April 23. We look forward to seeing you this summer! Best, Sarah Heilbronner & Brian Russ Directors, 2016 GRS on Neurobiology of Cognition

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Postdoctoral position: Goldman lab, UC Davis
by Mark Steven Goldman March 28, 2016

March 28, 2016

At least one postdoctoral position is available in the laboratory of Dr. Mark Goldman in the University of California at Davis Center for Neuroscience. UC Davis is a top-ten public research university (US News & World Report) located 1 hour east from the San Francisco Bay Area and 20 minutes from the state capital of Sacramento. The laboratory works on a broad range of problems in computational neuroscience, ranging from neural coding to dynamics and plasticity of single neurons and networks. Current work has focused especially upon issues related to working memory, neural integration, motor learning, and synaptic plasticity as described below. Projects include but are not limited to: 1) Dissecting the function of a biological neural integrator circuit. Work will be modeling the oculomotor neural integrator, a classic model system for working memory and neural integration that is amenable to in vivo whole-circuit optical recording, dendritic imaging, optogenetic perturbation, pharmacology, and connectomic reconstruction. The goal is to identify the cellular and circuit mechanisms underlying neural integration and continuous attractor formation, from subcellular processes to circuits and behavior, as well as to develop optimal experimental design methods for dissecting circuit function. Project in collaboration with the experiments of Dr. Emre Aksay (Weill/Cornell Medical) and connectomic reconstructions of Dr. Sebastian Seung (Princeton University). 2) Mechanisms of analog working memory and neural integration. The goal is to identify novel mechanisms of working memory and neural integration across a range of systems, including mechanisms for context-dependent memory function. 3) Cerebellar mechanisms of motor control and motor learning in the oculomotor system. The goal is to use the oculomotor system as a model system for understanding cerebellar-mediated motor learning. Theory and computational analysis will be used to dissect the circuit mechanisms, sites of plasticity, and broader computational principles underlying oculomotor learning. Theoretical work will provide predictions for, and be conducted in close collaboration with, the experimental laboratories of Dr. Emre Aksay (Weill/Cornell Medical) and Dr. Jennifer Raymond (Stanford University). Candidates are expected to have training in a quantitatively rigorous discipline such as math, physics, engineering, computer science, statistics, or computational neuroscience. Interested candidates should send a CV, brief statement of previous research and future research interests, and contact information for 3 references to: Mark Goldman, msgoldman(a)ucdavis.edu.

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Deadline approaching for Summer Workshop on the Dynamic Brain
by Adrienne Fairhall March 28, 2016

March 28, 2016

Dear Colleagues, Announcing the Summer Workshop on the Dynamic Brain 2016, co-organized by the Allen Institute for Brain Science and the Computational Neuroscience Program at the University of Washington and directed by Drs. Christof Koch and Adrienne Fairhall. Applications are being accepted until April 1, 2016. This intensive two-week, project-based interdisciplinary course aims to give advanced students in neuroscience, biology, physics, engineering and computer science a rapid introduction to the current state of understanding of the neurobiology of sensory processing, including anatomy, physiology and neural coding and a mentored introduction to Allen Institute open data sets. New this year: In 2016 we will hold an optional one-day Python bootcamp in Seattle on August 20. The workshop begins at Friday Harbor on August 21. Cost: Conference fees, housing and meals during the workshop will be covered by the organizers. Additional expenses, including transportation and incidentals, are the responsibility of the attendee. Please share this information with potential students and others in your department. Details and application form available at http://courses.washington.edu/braindyn/ . Thank you! Adrienne Fairhall University of Washington

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ICMNS 2016: Deadline Extended to Feb. 7, 2016
by Zachary Kilpatrick March 28, 2016

March 28, 2016

*Abstract deadline extended to February 7, 2016* https://icmns2016.inria.fr/call-for-contributions/ <https://icmns2016.inria.fr/call-for-contributions/> There will also be a prize for best papers. International Conference on Mathematical Neuroscience (ICMNS 2016) at the Congress Center in Juan-les-Pins on the French Riviera May 29 to June 1, 2016 Tutorials: May 29 Main Conference: May 30 - June 1 https://icmns2016.inria.fr/ <https://icmns2016.inria.fr/> CONFIRMED SPEAKERS Wulfram Gerstner (École polytechnique fédérale de Lausanne) John Rinzel (New York University) Antoine Triller (École Normale Supérieure de Paris) Rachel Kuske (U British Columbia) Jonathan Rubin (U Pittsburgh) Hinke Osinga (U Aukland) Carina Curto (Penn State University) Ruben Moreno-Bote (Foundation Sant Joan de Deu) Hiroya Nakao (Tokyo Institute of Technology) Eric Shea-Brown (U Washington) Si Wu (Beijing Normal University) Alex Roxin (Centre de Recerca Matematica) PROGRAM COMMITTEE Toni Guillamon (Universitat Politècnica de Catalunya) Roland Potthast (U Reading) Gregory Faye (Université Paul Sabatier ) Wilhelm Stannat (TU Berlin) Jonathan Touboul (College de France) Gilles Wainrib (Ecole Normale Supérieure) Suzanne Ditlevsen (University of Copenhagen) Boris Gutkin (Ecole Normale Supérieure) Martin Wechselberger (U Sydney) Jonathan Rubin (U Pittsburgh) Martin Krupa (INRIA Sophia Antipoilis) Carlo Laing (Massey University) Andre Longtin (U Ottawa) Daniele Avitabile (U Nottingham) Jose Carrillo (Imperial College) Pascal Chossat (Université Nice Sophia Antipolis) Carson Chow (National Institutes of Health) Steve Zucker (Yale University) Eric Shea-Brown (U Washington) Rachel Kuske (U British Columbia) Laura Sacerdote (Universita di Torino) Reinhard Hopfner (Johannes-Gutenberg Universitat) Olivier Faugeras (INRIA - Sophia Antipolis) Paul Bressloff (U Utah) Steve Coombes (U Nottingham) CONFERENCE CHAIRS Romain Veltz (INRIA - Sophia Anitpolis) Zachary Kilpatrick (U Houston) Evelyn Buckwar (Johannes Kepler Universitat Linz)

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Two PhD Positions in Computer Vision for Connectomics at INI in Zurich
by Jan Funke March 25, 2016

March 25, 2016

The Institute of Neuroinformatics (INI) of the University of Zurich and ETH Zurich has two PhD positions in the field of computer vision for connectomics, i.e., the reconstruction of neural circuits from electron microscopy volumes. The project aims at improving the current state of the art of discrete optimization models for neuron segmentation by investigating new segmentation methods, the incorporation of biological priors, (deep) learning from sample annotations, and the development of large-scale reconstruction pipelines. A detailed description can be found at: https://docs.google.com/document/d/1hThoBuesWucwCDUmStyCt44VWMscXy9KxBtuyA5… The project will be carried out in collaboration with the HCI Heidelberg (Germany) and the Universitat Politècnica de Catalunya, Barcelona (Spain). Generous funding for at least three years will be provided, including travel costs for regular visits of our collaborators and conference fees. Please send us an email with your CV at funke(a)ini.ethz.ch (Jan Funke) for further information. Regards, Jan Funke

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Post-Doc in Bordeaux, application deadline 01/04/2016 (1 week)
by Nicolas P. Rougier March 25, 2016

March 25, 2016

Actor–critic models of the basal ganglia Postdoc in Bordeaux (12 months), France Application deadline 01/04/2016. Details & application at: http://www.inria.fr/institut/recrutement-metiers/offres/post-doctorat/sejou… Nicolas Rougier --- Actor–critic models of the basal ganglia We developed a model of the basal ganglia (Piron et al., 2016) that introduces an action selection mechanism that is based upon the competition between a positive feedback through the direct pathway and a negative feedback through the hyperdirect pathway. The model also exploits the parallel organization of circuits between the basal ganglia and the cortex using segregated loops: one loop allows to choose the cue and one loop allows to make the actual motor selection. Learning occurs between the cognitive cortex and the cognitive striatum using a simple reinforcement learning where the values of the different cues are updated after each decision. As in most computational models of the basal ganglia, this model relies on an actor-critic architecture where the dopamine signal is used to encode the temporal difference prediction error signal in the critic (Joel et al., 2002; Khamassi et al., 2005). However, this algorithm is not very elaborated and its implementation is not biologically plausible since values are stored outside the model. The objectives of this postdoc is thus to review and to re-implement (Python) main actor-critic models of the literature in order to compare them on a common set of decision tasks (two-arm bandit task for example) in terms of biological plausibility and performances. Special attention will be given to the "Primary Value and Learned Value Pavlovian Learning Algorithm" model (O'Reilly, 2007) and the AGREL model (Roefselma et al. 2005). From these replications (that will be published in ReScience), the most plausible and compatible mechanisms will be implemented in our own model of the basal ganglia in order to replace the current reinforcement learning algorithm (Guthrie et al., 2013, Piron et al. 2016). Profiles PhD in computational neuroscience or computer science (machine learning) with strong experience in Python & the scientific Python stack (numpy, scipy, matplotlib, git/github). References • Joel, D., Niv, Y., & Ruppin, E. (2002). Actor–critic models of the basal ganglia: New anatomical and computational perspectives. Neural Networks, 15(4-6), 535–547. • Khamassi, M., Lachèze, L., Girard, B., Berthoz, A., Guillot, A. (2005). Actor-critic models of reinforcement learning in the basal ganglia: From natural to artificial rats. Adaptive Behavior, 13 (2). • Guthrie, M., Leblois, A., Garenne, A., & Boraud, T. (2013). Interaction between cognitive and motor cortico-basal ganglia loops during decision making: a computational study. Journal of Neurophysiology, 109(12). • C. Piron, D. Kase, M. Topalidou, M. Goillandeau, H. Orignac, T. N'Guyen, N.P. Rougier, T. Boraud, The globus pallidus pars interna in goal oriented and habitual behavior. Resolving an old standing paradox, Movement Disorders, (2016), to appear. • O'Reilly, R. C., Frank, M. J., Hazy, T. E., & Watz, B. (2007). PVLV: The Primary Value and Learned Value Pavlovian Learning Algorithm. Behavioral Neuroscience, 121(1). • Roelfsema, P.R., van Ooyen A. (2005). Attention-gated reinforcement learning of internal representations for classification. Neural Computation.

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Post-Doctoral Positions at Boston University Investigating Long-Range Neocortical Networks
by Chen, Jerry March 25, 2016

March 25, 2016

Post-Doctoral Positions Available --------------------------------- We are a new lab, headed by Jerry Chen, opening our doors in 2016 in the Department of Biology at Boston University SUMMARY: A longstanding goal in neuroscience is to achieve a complete understanding of the central nervous system, from the brain as a whole all the way down to individual neurons and synapses. A fundamental challenge in achieving this goal is bridging knowledge gaps impeded by the difficulty in integrating experimental measurements across different scales. Our lab studies the relationship between local circuits and long-range networks in the mammalian neocortex. We take an integrative approach by combining large-scale in vivo imaging technology with molecular and genetic tools in the awake-behaving animal. RESEARCH PROJECTS: Principles of Long-Range Cortical Communication. We are investigating how behavior-relevant information is processed both locally and globally throughout the neocortex. Using the mouse tactile whisker sensorimotor system as a model for studying long-range cortical communication during sensory processing and decision making, we seek to understand the following questions: - What are the circuits underlying long-range cortical communication? - What are the physiological mechanisms that subserve such operations? - What roles do these processes serve during behavior? Long-Range Cortical Circuits During Development. We are investigating how genes and development define the organization and function of long-range cortical circuits. Gaining a handle on how these circuits form will help us understand the role they serve during behavior. Technologies for Large-Scale Imaging of Neuronal Populations. We recently developed a multi-area two-photon microscope that enables simultaneous functional imaging with cellular resolution across cortical areas. We seek to expand on such methods to enable comprehensive monitoring of neuronal activity across the entire cortex. QUALIFICATIONS: We are seeking highly creative individuals who are interested in pursuing independent projects core to the lab's research interest. A first author publication (submitted or published) is a prerequisite for consideration. While experience with in vivo imaging and rodent behavior and a quantitative background is desired, we are also interested in individuals with a broad range of expertise within and outside of neuroscience. You can even be a mathematician, physicist, engineer, computer scientist, molecular biologist, artist, or musician. Some examples of potential good fits include: - Neurophysiologists with previous experience working with non-human primates interested in addressing similar questions in rodents. - Developmental neurobiologists interested in studying how circuit formation guides circuit function and behavior. - Computational neuroscientists interested in testing theoretical models using experimental data acquired in the lab. - Molecular biologists interested in utilizing molecular and genetic tools for addressing systems-level questions. - Optical engineers interested in developing and applying novel technologies for large-scale recording and stimulation of neuronal populations. For more information, go to www.chen-lab.org. If you are interested in applying, please submit a CV along with 3 references to: jerry(a)chen-lab.org.

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ANNPR 2nd Call for Papers
by Dr. Schwenker March 24, 2016

March 24, 2016

**** Please apologize cross-postings. 2nd Call for Papers IAPR TC3 International Workshop on Artificial Neural Networks in Pattern Recognition (ANNPR 2016) September 28-30, 2016 Ulm University, Ulm, Germany ANNPR 2016 invites papers that present original work in areas of neural networks, machine learning and pattern recognition, focusing on both theoretical and applied aspects. Topics of interest include, but not limited to: Methodological Issues - Supervised learning - Unsupervised learning - Combination of supervised and unsupervised learning - Feed-forward, recurrent, and competitive neural nets - Kernel machines - Hierarchical modular architectures and hybrid systems - Combination of neural networks and Hidden Markov models - Multiple classifier systems and ensemble methods - Probabilistic graphical models - Kernel methods - Deep architectures Applications in Pattern Recognition - Image processing and segmentation - Handwritten recognition and Document analysis - Sensor-fusion and multi-modal processing - Feature extraction, dimension reduction - Clustering and vector quantization - Speech and speaker recognition - Data, text, and web mining - Bioinformatics/Cheminformatics Important Dates Paper submission: May 4, 2016 Notification of acceptance: June 22, 2016 Camera ready due: July 6, 2016 Workshop: September 28-30, 2016 General Chairs Friedhelm Schwenker, Ulm University, Germany Hazem Abbas, German University of Cairo, Egypt Neamat El Gayar, Cairo University, Egypt Edmondo Trentin, University of Siena, Italy For more information, please visit us: http://neuro.informatik.uni-ulm.de/ANNPR2016/ -- Dr. Friedhelm Schwenker University of Ulm Institute of Neural Information Processing D-89069 Ulm, Germany phone: +49-731-50-24159 fax: +49-731-50-24156 email: friedhelm.schwenker(a)uni-ulm.de www: http://www.uni-ulm.de/in/neuroinformatik/mitarbeiter/f-schwenker.html

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Master student / intern position available at Max Planck Institute for Biological Cybernetics, Tübingen, Germany
by Filip Sobczak March 24, 2016

March 24, 2016

OPEN POSITION Master student / intern position at the Max Planck Institute for Biological Cybernetics in Tübingen, Germany The Department of High-field Magnetic Resonance at the Max Planck Institute for Biological Cybernetics in Tübingen is looking for a master’s student or an intern to work under the supervision of Dr. Xin Yu (Group Leader at MPI for Biological Cybernetics). This position is open now until filled. Research description: The project requires applying image processing and computer vision techniques for neuroscientific purposes. The goal is establishing a platform enabling the registration of rat brain MRI scans onto a brain atlas template. This will allow locating specific brain structures in a newly acquired MRI scan. Example applications of the platform are: - increasing the precision of targeting and recording deep brain nuclei, - enabling the use of MRI images as feedback in closed-loop control of a robotic arm operating in a 14T MRI scanner. The candidate should possess sufficient knowledge of image processing techniques to finish the task. Some groundwork has already been done. The Max Planck Institute for Biological Cybernetics is located in Tübingen, Germany. Next door to the MPI for Biological Cybernetics lies the MPI for Intelligent Systems. The Max Planck Society is an affirmative action/equal opportunity employer, and encourages applications from qualified women and minority candidates. Please send your CV (in English) to Dr. Yu if interested. Contact info: Dr. Xin Yu Research Group leader Max-Planck Institute for Biological Cybernetics Spemannstrasse 41, 72076 Tübingen, Germany E-mail: xin.yu(a)tuebingen.mpg.de , phone: 49 7071 601-740 Website: www.kyb.tuebingen.mpg.de/research/rg/yugroup/ Dr. Yu has published seminal papers on small animal high field MRI in Nature Neuroscience, Nature Methods, Neuron, PNAS, NeuroImage etc.

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Engineering Applications of Neural Networks 2016, 2nd-5th September, Scotland
by Chrisina Jayne March 24, 2016

March 24, 2016

Dear Colleague, The 17th International Conference on Engineering Applications of Neural Networks will take place in Aberdeen, Scotland, between 2nd-5th September 2016 (EANN 2016 – http://www.eann.org.uk/eann2016/index.php) The INNS (International Neural Network Society) is the primary sponsor of EANN. Robert Gordon University, the Scottish Informatics and Computer Science Alliance (SICSA) and Visit Aberdeen also sponsor the EANN conference. 6 PhD students studying at Scottish Informatics and Computer Science Alliance (SICSA) universities will have free registration. Authors are invited to submit electronically original, English-language research contributions or experience reports not concurrently submitted elsewhere. The proceedings of the conference will be published in Springer CCIS Series. Extended contributions will also be considered for publication in a Special Issue of Neural Computing and Applications Journal (Springer). In the spirit of the previous EANN conferences, the paper should concentrate on the application rather than just the algorithm or the theory. All application areas are relevant. Novel contributions related to deep learning and application of neural networks to data science applications are encouraged. The deadline for paper submission is 20th April 2016. Proposals for Workshops that examine emerging, innovative, or otherwise provocative issues within the conference area are encouraged as well. Workshop proposals should include a 1-2 page summary of the topic and the names and affiliations of 3-4 panellists who have made a commitment to participate. A mix of industry and academic panel members is recommended. Proposals for 90-minute tutorials are also invited on topics within the conference area. Tutorial proposals must be at most 5 pages, they must identify the intendedaudience, and they must give enough material to provide a sense of what will be covered. Full CFP is available at http://www.eann.org.uk/eann2016/cfp.php Important deadlines are available at http://www.eann.org.uk/eann2016/timeline.php Submission page http://www.eann.org.uk/eann2016/sbmissions.php Keynote Speakers http://www.eann.org.uk/eann2016/keynote.php Excursion Details http://www.eann.org.uk/eann2016/exc.php If you have any questions please email Chrisina Jayne at ( c.p.jayne(a)rgu.ac.uk) Best wishes, Prof Chrisina Jayne and Prof Lazaros Iliadis Programme Chairs for EANN2016

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PhD Opportunity: Brain stimulation / fMRI / Cortico-cereballar connectivity
by Ramnani, N March 24, 2016

March 24, 2016

Dear All, John Rothwell and I would like to invite expressions of interest from prospective PhD students for a project to map cortico-cereballar connectivity using brain stimulation and fMRI. Further details are available here: http://www.pc.rhul.ac.uk/sites/NeuroscienceLab/?page_id=192 Deadline: 15th April (but please respond as early as possible to discuss and shape an application in consultation with us). I'd be grateful if you could please forward this message to those who might be interested. Thanks and best wishes, Narender Narender Ramnani Professor of Neuroscience Fellow, Society of Biology Council Member, British Neuroscience Association Brain, Action and Cognition Laboratory Department of Psychology Royal Holloway, University of London Egham TW20 0EX, UK. Tel. 01784 443519 www.pc.rhul.ac.uk/sites/neurosciencelab<http://www.pc.rhul.ac.uk/sites/neurosciencelab> @n_ramnani

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Postdoctoral positions in neuroimaging mapping of early brain development
by gangli March 24, 2016

March 24, 2016

Postdoctoral research associate positions are available at the Infant Brain Mapping Lab of the University of North Carolina at Chapel Hill. Our current focuses are to better understand the dynamic and critical early brain development in health and disease, via multimodal neuroimaging analysis. The successful candidate will support our efforts either in advancing neuroimaging analysis technologies or in neuroscience applications. We are seeking highly motivated individuals who have extensive research experience in neuroimaging analysis (e.g., structural, diffusion or functional MRI) and demonstrated academic excellence, including publications in first-class journals and conferences. The candidate for Postdoctoral Research Associate should have a Ph.D. (or equivalent) in Neuroscience, Computer Science, Applied Mathematics/Statistics, Electrical Engineering, Biomedical Engineering, or related fields. Good command of programming tools including Matlab, C/C++, Linux, and scripting are necessary to carry out the research work in this group. The successful candidate will be part of a diverse group including neuroscientists, radiologists, psychologists, physicists, biostatistician, and computer scientists, and will build upon the group's extensive foundation on neuroimaging analysis. If interested, please email resume to Dr. Gang Li (gang_li(a)med.unc.edu)

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