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Applicant Call for Goettingen's Advanced Computational Neuroscience Summer School
by Agostina Palmigiano May 10, 2016

May 10, 2016

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Applications are invited for the Advanced COMPUTATIONAL NEUROSCIENCE Summer School in Göttingen, Germany September 06th - 16th, 2016 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% The aCNS School is a 10-day intensive course in mathematical and computational neuroscience. It offers students working in computational neuroscience and already familiar with its interdisciplinary nature, an intensive pedagogy of advanced mathematical and computational tools, designed to qualify young researchers to push the frontiers of the field. The course counts with and introductory day + 4 two-day theoretical blocks + 4 evening lectures in charge of the following researchers: * Vijay Balasubramanian <http://www.sas.upenn.edu/%7Evbalasub/public-html/Home.html>, University of Pennsylvania, Philadelphia, Germany * Jason Kerr <http://www.caesar.de/bbo.html>, Center of Advanced European Studies and Research, Bonn, Germany * Gilles Laurent <http://brain.mpg.de/research/laurent-department.html>, MPI for Brain research, Frankfurt, Germany * Tobias Moser <http://www.innerearlab.uni-goettingen.de/>, University Medical Center, Göttingen Germany * Erwin Neher <http://www.nobelprize.org/nobel_prizes/medicine/laureates/1991/neher-bio.ht…>, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany * Magnus Richardson <https://www2.warwick.ac.uk/fac/sci/systemsbiology/staff/richardson/>, University of Warwick, Conventry, England * Wolf Singer <http://www.esi-frankfurt.de/research/singer-lab/>, Ernst Strüngmann Institute for Neuroscience, Frankfurt, Germany * Misha Tsodyks <http://www.weizmann.ac.il/neurobiology/labs/tsodyks/>, Weizmann Institute of Science, Rehovot, Israel The consecutive two day thematic blocks are dedicated to mathematical approaches to circuit dynamics. Each lecturer will give a self-contained introduction to a particular set of theoretical tools in a block of two morning lectures. In the afternoon, participants will work on problem sets designed to develop proficiency in both the mathematical and computational tools learned earlier that day. An additional set of evening ‘easy’ lectures will give the opportunity to discuss significant advances in the field. The course takes place at the Department of Nonlinear Dynamics of the Max-Planck Institute for Dynamics and Self-Organization, Göttingen. Registration fee is 200 euros. Course language is English. Housing is provided by the school. Travel grants can be provided upon request. Only 15 participants will accepted. We invite applicants to apply by filling out the application form at: http://www.bccn-goettingen.de/events/cns-course <http://www.bccn-goettingen.de/events/cns-course> by *June 15, 2016*. Organizers: Rainer Engelken, Joscha Liedtke, Agostina Palmigiano, Manuel Schottdorf, Jens Wilting Best wishes and looking forward to seeing you in Göttingen, Agostina Palmigiano ___________________________ Agostina Palmigiano Max Planck Institute for Dynamics and Self-Organization Am Fassber 17, 37077 Goettingen +49 551 5176 421 office +49 163 882 6689 mobile http://www.nld.ds.mpg.de/ <http://www.nld.ds.mpg.de/> ___________________________

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CIBB 2016 - Second Call for Papers
by Andrea Bracciali May 9, 2016

May 9, 2016

[apologies for multiple posting] ============================================================== SECOND CALL FOR PAPERS CIBB 2016 13th International Meeting on Computational Intelligence methods for Bioinformatics and Biostatistics University of Stirling, Stirling, Scotland UK September 1-3 2016 http://www.cs.stir.ac.uk/events/cibb2016/ cibb2016(a)gmail.com ============================================================== In evidence (please see below and the web for details): - the very interesting list of INVITED SPEAKERS is growing ! - five new SPECIAL SESSIONS are running ! - EXTENDED DEADLINES for paper submission Please, connect to the conference via @CIBB2016 on twitter Keynote Speakers (to be completed) Prof. Mark Beaumont School of Biological Sciences, Bristol University Evolutionary Biology Prof. Natalio Krasnogor School of Computing Science, Newcastle University Computing Science and Synthetic Biology Prof. Bud Mishra Courant Institute of Mathematical Sciences and NYU School of Medicine, New York University NYU, and Mt Sinai School of Medicine Computer Science, Cell Biology and Genetics Dr. Guido Sanguinetti School of Informatics, University of Edinburgh System design of stochastic models SPECIAL SESSIONS Engineering Bio-interfaces and Rudimentary Cells as a way to develop Synthetic Biology Contacts: Maria Raposo, mfr(a)fct.unl.pt Biocuration and integration of biomedical databases Contacts: Riccardo Rizzo, ricrizzo(a)pa.icar.cnr.it Modelling and simulation methods for Systems Biology and Systems Medicine Contacts: Paolo Cazzaniga, paolo.cazzaniga(a)unibg.it High-Performance Computing and Deep learning methods for Genomic Data Analysis Contacts: : Fabio Tordini, tordini(a)di.unito.it Statistical inference in mechanistic models of biological system Contacts: Dirk Husmeier, Dirk.Husmeier(a)glasgow.ac.uk Scope The main goal of this 13th edition of the CIBB international conference is to provide a multi-disciplinary forum open to researchers interested in the application of computational intelligence, in a broad sense, to open problems in bioinformatics, biostatistics, systems and synthetic biology and medical informatics. Cutting edge methodologies capable of accelerating life science discoveries will be discussed. Following its tradition and roots, this year's meeting will bring together researchers from the international scientific community interested in advancements and future perspectives in bioinformatics and biostatistics. Also, looking at current trends and future opportunities at the edge of computer and life sciences, the application of computational intelligence to system and synthetic biology, and the consequent impact on innovative medicine will be of great for the conference. Theoretical and experimental biologists are also invited to participate in order to present novel challenges and foster multidisciplinary collaboration. The scientific program of CIBB 2016 will include Keynote Speakers, tutorials and special sessions. Contributed papers will be presented in plenary oral sessions, special sessions, or poster sessions. Topics of interest include, but are not restricted to: · Next generation sequencing bioalgorithms · Multi-omics data analysis · High dimensional statistical analysis of omics data · Algorithms for alternative splicing analysis · Algorithms for molecular evolution and phylogenetic analysis · Methods for the visualization of high dimensional complex omic data · Software tools for bioinformatics · Methods for comparative genomics · Methods for functional classification of genes · Methods for unsupervised analysis, validation and visualization of structures discovered in bio-molecular data · Health-Informatics and Medical Informatics. · Methods for the integration of clinical and genetic data · Heterogeneous data integration and data fusion for diagnostics · Algorithms for pharmacogenomics · Biomedical text mining and imaging · Methods for diagnosis and prognosis within personalized medicine · Statistical methods for the analysis of clinical data · Prediction of secondary and tertiary protein structures · Mass spectrometry data analysis in proteomics · Algorithms for molecular evolution and phylogenetic analysis · Bio-molecular databases and data mining · Mathematical modeling and automated reasoning on biological and synthetic systems · Computational simulation of biological systems · Methods and advances in systems biology · Spatio-temporal analysis of synthetic and biological systems · Network systems biology · Models for cell populations and tissues · Methods for the engineering of synthetic components · Modelling and engineering of interacting synthetic and biological systems · Software tools for bioinformatics, biostatistics, systems and synthetic biology Publication Accepted papers will be presented at the conference (at least one author is expected to register), and will be published on proceedings for conference distribution. Extended and revised versions of the papers presented at CIBB 2016 will be invited for a post-conference monograph. This is traditionally published in the Springer series of Lecture Notes in Bioinformatics (LNBI), (arrangements undergoing). Continuing the tradition of CIBB, we are planning to publish best papers in one (or more, as appropriate) special issue of an international scientific journal (such as BMC Bioinformatics, in the latest editions). Paper Submission Papers must be prepared following the guidelines illustrated on the CIBB web site and should be long between 4 and 6 pages. Papers should be submitted in PDF format on the Easy Chair conference system (link available on the web site). Important Dates Paper submission deadline: 29th May 2016 Notification of acceptance: 22nd June 2016 Final paper due: 8th July 2016 Conference: 1st -3rd September 2016 General Chairs Andrea Bracciali, University of Stirling, UK David Gilbert, Brunel University London, UK Gilbert MacKenzie, UL, ENSAI and Keele, UK

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3-year sensory-motor learning research fellow position at University of Birmingham
by Joseph Galea (School of Psychology) May 9, 2016

May 9, 2016

Dear all, Applications are invited for a 3-year postdoctoral position with Dr. Joe Galea (http://josephgalea.weebly.com) at University of Birmingham, UK (www.birmingham.ac.uk/schools/psychology/index.aspx<http://www.birmingham.ac.uk/schools/psychology/index.aspx>). The successful candidate will work on an ERC starting grant which will build upon recent work from the lab that has shown reward and punishment-based feedback to have dissociable effects on motor learning. Using a combination of behavioural analysis, genetics, pharmacology and modelling techniques this project will provide the first in-depth behavioural and neural account of the role of motivation (reward/punishment) in motor learning. For 1st of October 2016, I am looking to appoint a highly motivated candidate for a postdoctoral position. This role is aimed at developing a set of motor learning based tasks (model-based/ reinforcement/ use-dependent) that will be used to examine motivation in a range of motor learning settings. The postholder will be responsible for the programming of these tasks, testing them in a large set of healthy volunteers (who we will also collect genetic data from) and for the analysis of the behavioural data (kinematic/computational models). The successful candidate will have a PhD in Psychology, Physiology, Neuroscience, Engineering, Physics or Maths and have extensive experience with programming and running motor control/learning studies. Ideally they will be familiar with the KINARM end-point robot (B.KIN technologies) and/or be an expert with Simulink/Matlab (graphical-based programming). An ability to analyse behavioural data with matlab and perform computational analysis would be ideal. Finally they should have evidence of good academic writing and presentation skills through conference presentations and a strong (recent) publication record. Detailed information can be found here: http://www.jobs.ac.uk/job/ANP415/research-fellow/ Informal enquiries should be directed to: Dr. Joseph Galea (j.galea(a)bham.ac.uk) Closing date: 3/June/2016 Best regards, Joseph Galea Senior Birmingham Fellow ERC Starting Grant Holder School of Psychology University of Birmingham, UK.

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First CfP SAN2016
by Manousos Klados May 8, 2016

May 8, 2016

Dear colleagues, please, accept our advanced apologies for any multiple cross-postings... The Society of Applied Neuroscience (SAN, http://www.applied-neuroscience.org/) in cooperation with the Medical School of the Aristotle University of Thessaloniki and the Department of Neurology of the Max Planck Institute for Human Cognitive and Brain Sciences, have the great pleasure to invite you to the biennial meeting of the Society, SAN2016 (http://applied-neuroscience.org/san2016/) which will be held in Corfu Island, Greece between 6-9 of October, 2016. We cordially invite everyone engaged in studies of Neuroscience, to participate in the SAN2016 meeting. Apart from the highly promising scientific program, blended with numerous workshops and special sessions, there will also be a lively social program which will give our guests the opportunity to enjoy Greece and Corfu.We feel confident than you will enjoy SAN2016 both scientifically and socially as one of our main purposes is to give the chance to all colleagues to establish new fruitful international collaborations in areas of mutual academic and clinical interests. SAN2016 will bring together scientists and practitioners from a wide range of specialist fields. These include, but are not limited to: EEG/ MEG/ fMRI/ fNIRS Neurofeedback fMRI-NFB studies Brain Computer Interfaces Trans Cranial Magnetic Stimulation Peripheral Biofeedback Direct Current Stimulation Event-Related Potentials Brain Connectivity Neuronal Reorganization EEG and Cognition QEEG Diagnosis Emerging combined EEG and Virtual/augmented reality technology Instrumentation Audio-Visual Stimulation LORETA & Methodology Clinical, educational, sport and optimal performance applications Rehabilitation Integrative Therapy Complimentary evidence-based applications ...and all fields of applied neuroscience. All the above blended by an attractive selection of keynote and invited speeches, as well as, hands-on pre-conference workshops. There will be a practitioner track focusing on topical issues. The conference committee receives more proposals than space available. Careful attention to Quality of work, clarity and completeness of the submitted materials is likely to increase the chance for acceptance. All the accepted abstracts will be published in the Frontiers in Human Neuroscience. SAN2016 abstract submission is supported by a Frontiers event and are directly submitted through the following link until the 20th of June, 2016: http://www.frontiersin.org/events/SAN2016_Meeting/3717 Numerous special issues and research topics are also planned by Society members as per tradition. We believe that SAN2016 will be a wonderful chance for you, to meet old friends and make new ones. We look forward to seeing you in Corfu, Greece! Panos Bamidis John Gruzelier Manousos Klados SAN2016 Conference Chairs Manousos Klados, PhD Max Planck Institute for Human Cognitive & Brain Sciences Research Group of Neuroanatomy and Connectivity Phone: +49(0)-341-9940-2507 <+49(0)-341-9940-2507> Mobile: +49(0)-176-6988-1781 Email: klados(a)cbs.mpg.de <klados(a)cbs.mpg.de> Website: http://www.mklados.com Skype: mklados | Twitter: @mklados Address: Stephanstraße 1a PC D-04103 Leipzig Germany Join us at our next event:SAN 2016 Conferece <http://applied-neuroscience.org/san2016/index.php>

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Research Position: Brain Prosthesis Algorithms
by Randal Koene May 6, 2016

May 6, 2016

Brain Prosthesis Algorithms Brain science is the new rocket science. We’re building algorithms and software to correct deficits and enhance cognitive brain function using electrophysiology. We’re not making drugs or creating a brain training game, we’re using a data driven method to create neural prostheses to restore and enhance human cognitive performance. Join us in this delicious engineering opportunity in developing probabilistic kernel models of the hippocampus for a first application in memory. What we’re looking for: a data & algorithms or machine learning specialist with an exceptional aptitude for regularization and matrix algebra. Potential projects include building classification and regression models for neural spiking data, decoding of the spatio-temporal patterns of spikes with respect to behavior, analyzing large-scale complex neural data, building mixed model of point-process signals, and other data-driven modeling projects. Working with the cross-disciplinary members of our team which includes Professors at the University of Southern California (USC), you would be driving a neural system identification modeling platform that is pushing the state-of-the-art in neurocognitive therapeutics. Self-taught or via formal education, we expect not only that you meet our prerequisites on skills and mission alignment, but that you thrive in a meritocracy of mutual peer review within a first-class team. We expect that you take responsibility for your projects, demonstrate excellence, vision, and diligent but creative invention. You are the right person for this job if you are: - Strong in linear algebra/matrices, basis transformations, model order / dimension reduction, numerical methods - Strong in regression analysis, data analysis, nonlinear mathematical modeling - Results oriented, driven, flexible, adaptable, and have the courage to take on an ambitious project, because what matters most is to build a flourishing future We’d also love it if you have skills and experience in: - Either electrical engineering, biomedical engineering, statistics, computer science, computational neuroscience, or related fields - Machine learning (e.g. Bayesian, deep learning), time series analysis, pattern recognition, and point-process signal processing is highly preferred - Neural circuit modeling / exploration (e.g. discovering functional connectivity), control theory, system identification, compartmental neural modeling (e.g. NEURON) - Python, Matlab, C/C++/C#, R, Linux/Unix Exceptional team. Full-time. Benefits. Competitive compensation. Ground breaking work. To apply, please send an email with 1) CV (and list of publications) and 2) contact information for 2-3 professional references to: Dr. Randal A. Koene at brainprosthesis(a)gmail.com with a subject line “Brain Prosthesis Algorithms application”.

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Postdoctoral Research Assistant in functional optical neuroimaging (fNIRS) interpretation
by f.orihuela-espina＠ccc.inaoep.mx May 6, 2016

May 6, 2016

Please disseminate as appropriate and apologies for duplicates *Postdoctoral Research Assistant in functional optical neuroimaging (fNIRS) interpretation* Publication date: 30-Dec-2015; Revised: 1-May-2016 *About the Position*: The Department of Computer Science at Instituto Nacional de Astrofísica, Óptica y Electrónica (INAOE) in Puebla, Mexico, invites applications for a 1.5 years full-time postdoctoral research assistant position in the field of functional optical neuroimaging (fNIRS) interpretation. The position will suit candidates with strong background in Knowledge Representation, Statistics and Experimental Design, Medical Physics and/or Neurosciences. Candidates must hold a Ph.D. in a relevant discipline (e.g. computer science, mathematics, statistics, physics, engineering, neurosciences). The position is invited as from the 1st of September 2016 but earlier or later incorporations might be considered. *About the project*: Functional near infrared spectroscopy (fNIRS) is an emerging neuroimaging modality available for understanding brain behaviour for which current analysis and interpretation methods were often inherited and adapted from other neuroimaging modalities such as functional magnetic resonance imaging (fMRI). This migration of methods is never trivial or without compromises. This 3 years $2M MXN project explores alternative analysis and interpretation algorithms and techniques specifically developed for fNIRS which can answer complex questions about cognitive activity while considering and exploiting fNIRS specific particularities. For further details about the project and how to apply, please visit: http://ccc.inaoep.mx/~f.orihuela-espina/Src/Jobs.php *Contact*: Dr. Felipe Orihuela-Espina. e-mail: f.orihuela-espina(a)ccc.inaoep.mx

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INCF short course in neuroinformatics, Aug 31 - Sep 1 in Reading, UK
by Malin Sandström May 6, 2016

May 6, 2016

Dear all, (apologies for cross-posting) This year, the two-day INCF short course in neuroinformatics will be held in Reading, UK on August 31 - September 1, just before INCF's Neuroinformatics 2016 <http://neuroinformatics2016.org/>. The course is intended for neuroscience researchers wishing to develop their interests in neuroinformatics as well as informatics researchers with a strong interest in neuroscience. The course is open to advanced students, postdoctoral researchers, and faculty members. Basic knowledge of neuroscience is a prerequisite. Apply latest May 31! https://www.incf.org/resources/training/incf-short-course-2016 *Topics covered* data analysis and neuronal coding databases and ontologies multiscale modeling neuroengineering simulation/computation/workflows visualization dynamic field theory *Speakers* David Willshaw (Edinburgh, UK) GIacomo Indiveri (Zürich, Switzerland) Hayriye Cagnan (Oxford, UK) Yulia Sandamirskaya (Zürich, Switzerland) Roberto Toro (Paris, France) Gaute Einevoll (Ås, Norway) Marja-Leena Linne (Tampere, Finland) Please help spread the word to prospective students! Best regards, Malin -- Malin Sandström, PhD Community Engagement Officer malin.sandstrom(a)incf.org International Neuroinformatics Coordinating Facility Karolinska Institutet Nobels väg 15 A SE-171 77 Stockholm Sweden http://www.incf.org

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4-year Ph.D. Position in Neuroscience at the Donders Institute
by Bernhard Englitz May 5, 2016

May 5, 2016

Dear List, we are pleased to announce a 4-year Ph.D. position in the field of neuroscience, with a focus on acquisition and computational analysis of multilevel neural data. The position will be jointly supervised by Dr. Englitz and Dr. Cohen. Please find the details of the call below. Best wishes, Bernhard & Mike Bernhard Englitz, Ph.D. Assistant Professor Department of Neurophysiology Donders Centre for Neuroscience Faculty of Science, Radboud Universiteit Heyendaalseweg 135, 6525 AJ Nijmegen ------------------------------------------------------------------------------------------------------------------------------------ Project: This project will involve a combination of EEG and lowlevel neural recordings from multiple areas of the brain in rodents. Our focus will be on the rapid patterns of electrical activity that are observed during rest, sleep, and cognition. We will compare neural activity in multiple brain regions to simultaneously recorded EEG activity, in order to determine how these multiscale microstates are related to sensory processing. Results from this project will help us understand how the EEG signal is related to the complex spatiotemporal dynamics of the brain, its neural computations, and their relation to sensory perception. In turn, these findings will help lay groundwork for individualized diagnosis of brain dysfunctions. Scientific Environment: The Donders Institute for Brain, Cognition and Behaviour consists of three research centres, the Centre for Cognition, the Centre for Cognitive Neuroimaging and the Centre for Neuroscience. The Donders Institute focuses on state-of-the-art cognitive neuroscience, in a multidisciplinary approach, and offers excellent lab and neuroimaging facilities. The position will be jointly hosted at the Neuroinformatics and the Neurophysiology departments, which together provide a high quality neuroscience environment with facilities for chronic and non-chronic many-channel recordings, imaging and computational modeling. The research questions of the departments range from fundamental to applied, and enable the interaction of theory and experimental work in a single location. The Donders Institute is an equal opportunity employer, committed to building a culturally diverse intellectual community, and as such encourages applications from women and minorities. Radboud University offers a parental leave scheme and day care on campus. Qualifications: - MSc degree in computational neuroscience, mathematics, physics, engineering or a related area. - Experience with programming and data analysis in Matlab/Python. - Experience with quantitative analysis (e.g. linear algebra, time-frequency analysis) - Experience with electrophysiology is considered a plus. - The applicant should have a pro-active attitude, good communication skills, and be able to effectively work in a multi-disciplinary team. Application Link: http://www.ru.nl/werken/details/details_vacature_0/?recid=579059 <http://www.ru.nl/werken/details/details_vacature_0/?recid=579059> Closing Date of Call : 30.5.2016 Planned Starting Date : 1.9.2016

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Ph.D. and Master positions in theoretical neuroscience at the MPI for Brain Research
by Tatjana Tchumatchenko May 4, 2016

May 4, 2016

Ph.D. and Master positions in theoretical neuroscience at the Max Planck Institute for Brain Research We are seeking undergraduate students interested in writing a Master thesis and also have open positions for Ph.D. Students to join our group "Theory of neural dynamics" at the Max Planck Institute for Brain Research lead by Dr. Tatjana Tchumatchenko. Our group studies how networks of neurons encode and decode sensory stimuli and how these functions are related to computations that underlie cognitive functions and behavior. We develop models to address linear and non-linear properties of neuronal networks and have ongoing collaborations with experimental labs where we analyze in vitro as well as in vivo data and develop appropriate models to explain the observed phenomena. Successful applicants should have a strong background in a quantitative field such as physics, mathematics or computer science and should be interested in an interdisciplinary exchange with other disciplines such as biology or medicine. Life science majors interested in quantitative modeling work are also encouraged to apply, particularly if they would like to combine experiments and theory in their Master or Ph.D. thesis work. We are looking for candidates with strong English skills and prior programming experience. In order to make teamwork in our group enjoyable and fun, the ideal candidate should have a strong work ethic and have demonstrated consistent self-motivation skills. Female students are particularly encouraged to apply. Prospective students should apply by sending an email to theoryneuraldynamics(a)gmail.com which includes * a letter of motivation, * CV, * and a copy of the current academic transcripts To make your motivation letter easier to write for you and more informative for us, please check the list of questions to be answered in your motivation letter at http://www.tchumatchenko.de/Opportunities.html Looking forward to your applications! Tatjana Tchumatchenko -- Dr. Tatjana Tchumatchenko Research group leader Theory of Neural Dynamics Max Planck Institute for Brain Research Max-von-Laue-Str 4 60438 Frankfurt am Main, Germany www.tchumatchenko.de

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Collaborative Development of Data-Driven Models of Neural Systems: Janelia Farm Sept 18-12
by Padraig Gleeson May 4, 2016

May 4, 2016

[Apology for cross-postings] Dear colleagues, We are pleased to announce a conference on: Collaborative Development of Data-Driven Models of Neural Systems September 18-21, 2016 Janelia Farm Research Campus, Virginia, USA Deadline for registration: 18th May Detailed computational models are critical for elucidating neuronal and network function. They enable different levels of description to be linked, a wide range of neurophysiological experiments to be interpreted and quantitative predictions to be made. These factors are important for understanding large-scale complex systems, like neural circuits; however, more extensive use and scaling up of these data driven models pose challenges in ensuring that models are scientifically rigorous, as well as accessible and usable by both theoretical and experimental researchers alike. This conference will bring together a range of experimentalists, theoreticians and neuroinformatics developers with the aim of facilitating a global, open infrastructure for collaborative model development in neuroscience. *Organizers* Padraig Gleeson, University College London Angus Silver, University College London *Invited Participants* Anton Arkipov, Allen Institute for Brain Science Giorgio Ascoli, George Mason University Upinder Bhalla, National Centre for Biological Sciences Avrama Blackwell, George Mason University Kevin Briggman, National Institute of Neurological Disorders and Stroke/NIH Dean Buonomano, University of California, Los Angeles Nicholas Cain, Allen Institute for Brain Science Claudia Clopath, Imperial College London Rosa Cossart, Institut de Neurobiologie de la Méditerranée Sharon Crook, Arizona State University Andrew Davison, Centre National de la Recherche Scientifique Erik De Schutter, Okinawa Institute of Science and Technology Shaul Druckmann, Janelia Research Campus/HHMI Chris Eliasmith, University of Waterloo Jeremy Freeman, Janelia Research Campus/HHMI Michael Hausser, University College London Jeanette Hellgren Kotaleski, Karolinska Institutet Fritjof Helmchen, University of Zurich David Kleinfeld, University of California, San Diego Jeff Magee, Janelia Research Campus/HHMI Robert McDougal, Yale School of Medicine Eilif Muller, École Polytechnique Fédérale de Lausanne Hanchuan Peng, Allen Institute for Brain Science Ruben Portugues, Max Planck Institute of Neurobiology Mark Schnitzer, HHMI/Stanford University Ivan Soltesz, Stanford School of Medicine Nelson Spruston, Janelia Research Campus/HHMI Misha Tsodyks, Weizmann Institute of Science Registration is free, but places are limited.*Registration closes 18th May 2016*. For more details and to apply for participation go to https://www.janelia.org/you-janelia/conferences/collaborative-development-d…. ----------------------------------------------------- Padraig Gleeson Room 321, Anatomy Building Department of Neuroscience, Physiology& Pharmacology University College London Gower Street London WC1E 6BT United Kingdom +44 207 679 3214 p.gleeson(a)ucl.ac.uk -----------------------------------------------------

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MICCAI Challenge on Neural Circuit Reconstruction
by Jan Funke May 3, 2016

May 3, 2016

Dear colleagues, We would like to draw your attention to the MICCAI challenge "CREMI: Circuit Reconstruction from Electron Microscopy Images" (http://cremi.org/) As of May 1st, the training phase of the challenge has opened. We provide three volumes with dense neuron and synapse segmentation, along with annotations for pre- and post-synaptic partners (http://cremi.org/data.html) The goal of this challenge is to evaluate algorithms for automatic reconstruction of neurons and neuronal connectivity from serial section electron microscopy data. The comparison is performed not only by evaluating the quality of neuron segmentations, but also by assessing the accuracy of detecting synapses and identifying synaptic partners. The challenge is carried out on three large and diverse datasets from adult Drosophila melanogaster brain tissue, comprising neuron segmentation ground truth and annotations for synaptic connections. A successful solution would demonstrate its efficiency and generalizability, and carry great potential to reduce the time spent on manual reconstruction of neural circuits in electron microscopy volumes. Follow us on Twitter for updates (https://twitter.com/cremi_challenge) and feel free to contact us at challenge(a)cremi.org. Regards, The CREMI organizers (Jan Funke, Stephan Saalfeld, Davi Bock, Srini Turaga, and Eric Perlman)

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BMVA Workshop on "Vision for interaction: From humans to robots"
by Alessandra Sciutti May 3, 2016

May 3, 2016

=============================================== VISION FOR INTERACTION: From humans to robots One Day BMVA symposium - London, UK on October 19, 2016 Website: www.bmva.org/meetings ================================================ **************** Keynote Speakers: **************** + Prof. Antonia Hamilton (UCL) and + Prof. Yiannis Aloimonos (Univ. of Maryland). **************** Abstract: **************** Since early infancy, the ability of humans at interacting with each other is substantially strengthened by vision, with several visual processes tuned to support prosocial behaviour. For instance, a natural predisposition to look at human faces or to detect biological motion is present at birth. More refined abilities as the understanding and anticipation of others' actions progressively develop with age, leading, in a few years, to a full capability of interaction based on mutual understanding, joint coordination and collaboration. A key challenge of robotics research nowadays is to provide artificial agents with similar advanced visual perception skills, with the ultimate goal of designing humanoid robots able to recognize and interpret both explicit and implicit communication cues embedded in human movements. These achievements pave the way for the large-scale use of Human-Robot Interaction based applications on a variety of contexts, ranging from the design of personal robots, to physical, social and cognitive rehabilitation. ******************* Call for contributions: ******************* In this highly interdisciplinary one-day workshop we aim at bringing together contributions from the fields of cognitive science, robotics, machine vision and artificial intelligence, to corroborate the discussion on the potential guidelines to design and develop biologically-inspired computational vision models that may favour a natural interaction between artificial systems and humans. Please submit a short abstract summarizing your contribution, you may include links or pointers to web-based illustrations, demonstration material or papers giving more details. The work can be in progress or recently published, in addition to novel research. If you would like to give a talk, please contact Noceti (nicoletta.noceti(a)unige.it ) and Sciutti (alessandra.sciutti(a)iit.it ) by email by July 6, 2016. Areas of interest include but are not limited to: Vision neuroscience for interaction Computational vision models Vision for Robotics and Artificial intelligence Human robot interaction Vision in Social sciences This workshop is supported by the European Project CODEFROR (FP7-PIRSES-2013-612555) ************** Important dates: ************** + July 6, 2016 Deadline for abstract submission October 19, 2016 + BMVA symposium at BCS (British Computer Society) in London, UK. *********** Chairs: *********** + Nicoletta Noceti (Università degli Studi di Genova) - + nicoletta.noceti(a)unige.it Alessandra Sciutti (Istituto Italiano di + Tecnologia) - alessandra.sciutti(a)iit.it

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Postdoc position: Neural engineering and BMI in NYU
by Chen, Zhe May 2, 2016

May 2, 2016

Dear colleagues Applications are now being accepted for a postdoctoral fellow position to combine experimental, computational and engineering techniques to study neural mechanisms of central pain circuits using rodent models. The applicant will work closely with Dr. Zhe (Sage) Chen and Dr. Jing Wang at the New York University School of Medicine, with cross-disciplinary training in computational neuroscience, rodent behavior and electrophysiology, optogenetics, and neural engineering (brain-machine interface). The applicant will have great opportunities to interact with a large and growing neuroscience community at the NYU campus, including the Neuroscience Institute (http://neuroscience.med.nyu.edu) Center for Neural Science (http://www.cns.nyu.edu) Department of Neuroscience & Physiology (http://neuro-physio.med.nyu.edu) Department of Psychiatry (http://psych.med.nyu.edu) and Department of Anesthesiology, Perioperative Care and Pain Medicine (http://www.med.nyu.edu/anes/home ). NYU Neuroscience community is also surrounded by other institutions in the greater New York metropolitan area (such as Columbia, Cornell, Rockefeller and Mount Sinai). The postdoc position is available immediately, and will be renewable up to 4 years depending on performance. Applications must have a PhD degree in Engineering (Biomedical or Electrical), Statistics, Physics or a related discipline. The desired applicant is expected to be highly motivated and work independently as well as cooperatively with other colleagues in all research projects. Ability to learn new techniques and resolve new research challenges is essential. Strong experiences in developing rodent or primate brain-machine interface (BMI) systems are desired. Previous training in animal behavior and optogenetics, in vivo neurophysiological recordings, are preferred but not required. Strong programming skills in C/C++ or hardware implementation experiences are a plus. To apply, please send an email along with (i) CV (with a complete list of publications); (ii) a cover letter describing research accomplishments and interests; (iii) the names and contact information of two to three references to: Dr. Zhe (Sage) Chen (zhe.chen3(a)nyumc.org<mailto:zhe.chen3@nyumc.org>) with a subject line “Postdoc application”. Best Zhe (Sage) Chen ------------------------------------------------------------ This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email. =================================

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PhD position: population coding in the retina
by Olivier Marre May 2, 2016

May 2, 2016

A funded PhD position is available at the Vision Institute, Paris, to work with Olivier Marre on population coding in the retina. We have developed methods to record the activity of a large number (100-200) of ganglion cells, the output of the retina. The student will perform experiments and analyze data to understand how information can be coded in this activity. A particular emphasis will be put on the coding of trajectories of moving objects in different visual contexts. The research project is highly interdisciplinary. Applicants should have a quantitative background or some programming experience. A background in biology is welcomed but not required. The student will be trained to perform in vitro retina experiments. The Vision Institute ( http://www.institut-vision.org ) is a research center located in the center of Paris and dedicated to research on vision and vision diseases, with the aim of bridging the gap between academic, clinical, and industrial research. It is affiliated to Pierre and Marie Curie University. This PhD is funded as part of a project involving Drs Frédéric Chavane and Ivo Vanzetta (INT Timone, Marseille, France) and Dr Bruno Cessac (INRIA, Sophia-Antipolis). Collaborations with these labs will therefore be encouraged. The position should ideally start in October 2016. For more information, please contact Olivier Marre: olivier.marre(a)inserm.fr

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2nd Call for Papers: IEEE RO-MAN 2016 Workshop on Neuroscience Methods in Human-Robot Interaction
by Burcu Ayşen Ürgen May 2, 2016

May 2, 2016

IEEE RO-MAN 2016 Workshop on Neuroscience Methods in Human-Robot Interaction (New York City, 26-31st August, 2016) Neuroscience methods such as brain imaging are increasingly used to address research questions in robotics, robot-human communication and interaction. This workshop will provide an overview of state-of-the-art work at the intersection of human-robot interaction and human neuroscience, to show how cross-disciplinary collaboration can be a win-win, and to help increase communication between researchers from different yet complementary disciplines, with the hope of catalysing new ideas and collaborations. Neuroscientists with expertise in several topics of interest for RO-MAN 2016 <http://www.ro-man2016.org/> (e.g., embodiment, empathy, social cognition, body movements, gestures, facial expressions, anthropomorphism, learning and imitation, social presence, inference of human states, machine learning and brain-machine interfaces) will introduce the methods used, and present empirical work exemplifying their application to robotics, highlighting not only how such studies have led to insights on neural mechanisms of interaction, communication, and collaboration, but also how the findings inform the design and development of new robots, robot-human collaborative systems, interaction modalities and interfaces. We will solicit papers from the broader community that address these themes. Robotics and neuroscience both being active, rapidly developing, and high priority research areas, and the combination of expertise across disciplines holding great promise for advances in both theory and applications, the workshop will serve an important role by bringing together researchers coming from different backgrounds. Panel sessions will address challenges for interdisciplinary and novel research and discuss ideas for increasing synergy and impact future work. *SPEAKERS* Ayse P. Saygin, PhD (UC San Diego, USA) Emily S. Cross, PhD (Bangor University, UK) Thierry Chaminade, PhD (Institut de Neurosciences de la Timone, FRANCE) Susanne Quadflieg, PhD (University of Bristol, UK) James Thompson, PhD (George Mason University, USA) *WORKSHOP ORGANIZERS* Burcu A. Urgen, PhD (University of Parma, ITALY) Ayse P. Saygin, PhD (UC San Diego, USA) Emily S. Cross, PhD (Bangor University, UK) Workshop website: http://neurorobotics.ucsd.edu/ *CALL FOR PAPERS* We solicit full paper submissions from cognitive and social neuroscientists and human-robot interaction researchers with expertise in several topics of interest for RO-MAN 2016 including but not limited to embodiment, empathy, social cognition, nonverbal communication via body movements, gestures, facial expressions, anthropomorphism, learning and imitation, social presence, social knowledge, inference of human states, machine learning and brain-machine interfaces. The submitted papers are intended to include applications of various neuroimaging methods such as functional magnetic resonance imaging (fMRI), electroencephalography (EEG), magnetoencephalography (MEG), and transcranial magnetic stimulation (TMS) to topics of relevance to RO-MAN 2016. Observational and behavioural studies may be suitable as long as they are highly cross-disciplinary. Theoretical papers that address the theme of the workshop and RO-MAN 2016 may also be included. The expectation from submissions is to highlight not only how neuroscience studies involving robotics have led to insights on the human cognitive and neural mechanisms of interaction, communication, and collaboration, but also how the findings inform the design and development of new robots, robot-human collaborative systems, interaction modalities and interfaces. *EVALUATION* All submissions will be evaluated by a minimum of two reviewers. The reviewers will evaluate each submission based on how informative the study has been both to human neuroscience AND human-robot interaction as well as the quality of the research methodology. All accepted papers will be published in workshop proceedings. Each paper accepted for an oral or poster presentation has to be presented by one of the authors. *IMPORTANT DEADLINES* Full paper submissions due 05/15/2016. Notifications will be sent by 05/18/2016. Final versions will be submitted by 05/20/2016. *PAPER GUIDELINES* All full paper submissions should follow the guidelines specified in the main conference website, check here <http://www.tc.columbia.edu/conferences/roman2016/submissions/papers/>. *HOW TO SUBMIT* The papers should be emailed to neuroscience.robotics.workshop(a)gmail.com by the deadline: 05/15/2016. -- Burcu Aysen Urgen, PhD Email: burcu.urgen(a)gmail.com Website: http://www.burcuaysenurgen.com

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Book: Bayes' Rule With Python
by James Stone April 30, 2016

April 30, 2016

I'd like to announce the publication of this book: Bayes' Rule With Python A Tutorial Introduction to Bayesian Analysis by JV Stone Reviews, synopsis, and table of contents can be found here: http://jim-stone.staff.shef.ac.uk/BookBayes2012/books_by_jv_stone/index.html regards, Dr James V Stone, Department of Psychology, University of Sheffield, UK.

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SSBSS 2016: Call for Oral Presentations/Posters: 9-13 July 2016, Volterra (Pisa) Tuscany, Italy - 3rd Int. Synthetic & Systems Biology Summer School - Early Application: May 26, 2016
by Giuseppe Nicosia April 29, 2016

April 29, 2016

_________________________________________________________________________ Call for Participation (apologies for multiple copies) Please help forward it to other potentially interested attendees, thanks! _________________________________________________________________________ 3rd International Synthetic and Systems Biology Summer School - SSBSS 2016, 9-13 July 2016, Volterra (Pisa) - Tuscany, Italy ssbss.school(a)gmail.com <mailto:ssbss.school@gmail.com> http://www.taosciences.it/ssbss/ https://www.facebook.com/ssbss.school/ https://twitter.com/SchoolSsbss EARLY APPLICATION DEADLINE: May 26, 2016 http://www.taosciences.it/ssbss/#application-form The Synthetic and Systems Biology Summer School (SSBSS) is a full-immersion five-day residential summer school at the Volterra Learning Center (Pisa - Tuscany, Italy) on cutting-edge advances in systems and synthetic biology with lectures delivered by world-renowned experts. The school provides a stimulating environment for students (from Master students to PhD students), Post-Docs, early career researches, academics and industry leaders. Participants will also have the chance to present their results (with Oral Talks and Posters), and to interact with their peers, in a friendly and constructive environment. SSBSS 2016 DEADLINES: Early Application: May 26, 2016 Notification Acceptance: from April 2 to 28 May 2016 Late Application: from May 27, to July 4th 2016 Notification Acceptance: from May 28th 2016 according to registration time Early Short Talk/Poster Submission: May 26, 2016 Notification Acceptance: from 2 April to 28 May 2016 Late Short Talk/Poster Submission: from May 27, to July 4th 2016 Notification of Decision for Oral/Poster Presentation: from May 28, 2016 according to submission time http://www.taosciences.it/ssbss/#application-form FINAL LIST OF SPEAKERS * Yaakov (Kobi) Benenson, Synthetic Biology Group@Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland Lecture 1: The practice of mammalian synthetic biology Lecture 2: Mammalian cell classifiers * Leonidas Bleris, Bioengineering Department, The University of Texas at Dallas, USA Lecture 1: Genome Editing Technologies and Therapeutic Modalities Lecture 2: Benchmark Circuits and Topological Properties * Edoardo Boncinelli, Universita’ Vita-Salute San Raffaele, Milano, Italy Lecture: TBA * John Cumbers, Founder SynBioBeta, Mountain View, CA, USA Lecture: Synthetic Biology: new tools for an industry at an inflection point. * Domitilla Del Vecchio, Department of Mechanical Engineering, MIT, USA Lecture 1: Modularity in genetic circuits: Dream versus Reality Lecture 2: Engineering Modularity in Genetic Circuits * Diego Di Bernardo, Dept of Chemical Materials and Industrial Production Engineering University of Naples "Federico II", Naples, Italy Lecture 1: "Engineering and Control of Biological Circuits in Yeast" Lecture 2: "Engineering and Control of Biological Circuits in Mammalian Cells * Barbara Di Ventura, Synthetic Biology Group, BioQuant/DKFZ, Heidelberg, Germany Lecture 1: Using blue light to control protein localization in living mammalian cells Lecture 2: Using split inteins for protein engineering in living cells * Jonathan S. Gootenberg, Feng Zhang and Aviv Regev Groups, Department of Systems Biology, Harvard Medical School, Harvard University, USA Lecture 1: "Discovering and Characterizing CRISPR effectors" Lecture 2: "Probing Biology with CRISPR Screening" * Markus Herrgard, Technical University of Denmark - Biosustain, Novo Nordisk Foundation Center for Biosustainability, Denmark Lecture 1: "Developing an Integrated Cell Factory Design Tool" Lecture 2: "Using Automated Laboratory Evolution to Optimize Cell Factories” * Shalev Itzkovitz, Department of Molecular Cell Biology, Weizmann Institute of Science, Israel Lecture 1: "Single Molecule Approaches for Studying Gene Expression in Intact Mammalian Tissues" Lecture 2: "Systems Biology of Stem Cell-Maintained Tissues” * Francesco Ricci, Dipartimento di Scienze e Tecnologie Chimiche, University of Rome Tor Vergata, Rome, Italy Lecture 1: "DNA Nanotechnology Tools and Reactions for Synthetic Biology" Lecture 2: "Nature-inspired DNA-based Nanodevices Next Generation Sequencing Workshop – Afternoon July 12th, 2016 * “How fast can we align sequences?” Mario Guarracino, CNR, Italy * “Advanced Bioinformatics tools for NGS” – TBC Luca Zammataro, Yale University, USA Tutorials: * “Detection and analysis of contaminating sequences in NGS sequencing data” Ilaria Granata, CNR, Italy * “Detection and interpretation of circular RNAs in RNA-seq experiments” Parijat Tripathi, CNR, Italy SSBSS 2016 DIRECTORS Diego Di Bernardo, TeleThon Institute of Genetics & Medicine - TIGEM and University of Napoli "Federico II", Italy Giuseppe Nicosia, University of Catania, Italy Luca Zammataro, Yale University, USA MORE INFORMATION ssbss.school(a)gmail.com <mailto:ssbss.school@gmail.com> http://www.taosciences.it/ssbss/ https://www.facebook.com/ssbss.school/ https://twitter.com/SchoolSsbss Social event(s): social tour and dinner in Florence. Please help us distributing in your circles (emails, blogs, and social networks) the call for participation and call for oral talks/posters for SSBSS 2016. Together we will make SSBSS a great event! See you in Tuscany in July! More Info: ssbss.school(a)gmail.com <mailto:ssbss.school@gmail.com> http://www.taosciences.it/ssbss/ -- Giuseppe Nicosia, Ph.D. Associate Professor of Computer Engineering Dept of Mathematics & Computer Science University of Catania Viale A. Doria, 6 - 95125 Catania, Italy P +39 095 7383048 nicosia(a)dmi.unict.it http://www.dmi.unict.it/nicosia ================================================================== 3rd International Synthetic & Systems Biology Summer School - SSBSS 2016 * Biology meets Computer Science & Engineering * July 8-14, 2016 - Volterra (Pisa), Tuscany, Italy http://www.taosciences.it/ssbss/ ================================================================== 2nd International Workshop on Machine learning, Optimization & big Data - MOD 2016 August 26-29, 2016 - Volterra (Pisa), Tuscany, Italy http://www.taosciences.it/mod/ ==================================================================

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Call for proposals to host the annual Computational Neuroscience (CNS) Meeting in 2018
by Tam, Nicoladie April 29, 2016

April 29, 2016

Call for proposals to host the annual Computational Neuroscience (CNS) Meeting in 2018 The Organization for Computational Neurosciences (OCNS, http://www.cnsorg.org ) requests proposals from candidate local organizers to organize the CNS meeting in 2018 in a location outside of Europe, preferably in North or South America. Groups or individuals interested in organizing the CNS*2018 meeting should submit a proposal with consideration of the extensive on-line information ( http://www.cnsorg.org/cns-2018-local-organizer ) and using the on-line templates provided as a guide. The OCNS board members will select/discuss the different proposals, contact the potential local organizers for more information if necessary and come to a timely agreement between OCNS and potential local organizers. Proposals should be emailed to the OCNS president at president(a)cnsorg.org<mailto:president@cnsorg.org> no later than June 15th, 2016. Decisions are expected to be conveyed to potential organizers in July 2016. Astrid Prinz (OCNS President)

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Parallel Simulation with NEURON
by Ted Carnevale April 28, 2016

April 28, 2016

A few seats remain available in the course Parallel Simulation with NEURON that we will be presenting at HHMI|Janelia Saturday, June 25 - Monday, June 27. This course is designed for users who already know how to write hoc or Python code for NEURON and now want to adapt existing models, or create new ones, that can be simulated on parallel hardware. Special attention will be paid to strategies for debugging, and measuring and improving performance. Registration is subject to approval by the course's faculty. The registration deadline is Friday, May 20, 2016. For more information and the online application form, see http://www.neuron.yale.edu/neuron/static/courses/summer2016/summer2016.html --Ted

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Fully funded PhD position, University of Genoa, Italy - "Visuo-haptic sensorimotor models"
by Silvio P. Sabatini April 28, 2016

April 28, 2016

===================================================================== Applications are invited for one full-time PhD studentship (with scholarship) for a period of 3 years, at the Department of Informatics, Bioengineering, Robotics, and System Engineering, University of Genoa, Italy. ===================================================================== The position will start on Nov 1st, 2016 on the following research project: ACTION-PERCEPTION TRANSFER IN VISUAL AND VISUO-HAPTIC BEHAVIOR _Deadline for Applications: June 10th, 2016_ Experiencing the sensory feedback gained from movements allows us to learn the contingencies and correlations between actions and sensory events. Accordingly, sensing "educates" motor action, but, conversely, and more elusively, motor practice can "educate" sensing. The proposed research aims at investigating the interplay between action and perception at different levels: (1) modelling early action-perception transfer in visual feature extraction (cf. neural coding of visual properties) and perceptual judgement processes (decoding stages); (2) experiments on bidirectional perceptual-action influence - including the development of systems and devices that integrate vision and haptics; (3) applications in neuromotor and cognitive rehabilitation, in which action is used to educate perception and perception is used to educate action. The project will provide the opportunity to work on neural modeling, visual and visuo-haptic psychophysics, and robotics. Experimental, modeling, and theoretical approaches might be pursued with a different accent according to personal attitude. * HOW TO APPLY Candidates must have: - University degree at M.Sc. level (or expect to obtain it by October 31st, 2016) in Bioengineering, Computer Science, Physics, or related disciplines; - attitude for problem solving and interest in experimental work; - essential skills comprise Matlab and/or C/C++/C# or Python programming. Online application is possible till June 10th, 2016 (at noon) Italian time Full details on the call and the application procedure are available at: http://www.studenti.unige.it/postlaurea/dottorati/XXXII/ENG/ http://phd.dibris.unige.it/biorob/index.php/how-to-apply Prospective students, please contact: Silvio P. Sabatini (silvio.sabatini(a)unige.it) or Vittorio Sanguineti (vittorio.sanguineti(a)unige.it) providing your CV and qualifications, the name and contact details of two references, and a description of your research interests. * WHERE The research will be conducted jointly at "The Physical Structure of Perception and Computation (PSPC) Lab", and the "Neuro-engineering and Neuro-robotics lab (NEUROLAB)", led by Silvio P. Sabatini and Vittorio Sanguineti, respectively. PSPC-Lab has a long-standing expertise in visual coding and multidimensional signal representation, robot perception and computer vision. In the last years, the lab's research activity focused on the analysis of the structural mechanisms of visuo-spatial cognition, responsible for orienting and interacting in the 3D space. NEUROLAB (http://www.neurolab.dibris.unige.it/) focuses on experimental studies on neural control of movement, in normal and pathologic conditions. Recent activity aimed at investigating the computational basis of motor skill learning, and how this process can be facilitated by robots and other interactive technologies. Our labs are located in Genoa, a small beautiful town in northernItaly, both from historical (its historical center is the largest of Europe) and naturalistic point of view (sea and mountains coexist creating a unique landscape). Genoa is only 1.30h away from Milan by train and connected by plane to Rome (1.00h), London (2h) and Paris (1.30h). Regards, -- --------------------------------------------------------------------- Silvio P. SABATINI, PhD [PSPC Research Group] Professor of Bioengineering DIBRIS - University of Genova | e_mail:silvio.sabatini@unige.it Via Opera Pia, 11A | phone: +39 010 3532092/3532794 I-16145 Genova (ITALY) | fax: +39 010 3532289/3536533 URL:http://pspc.unige.it --------------------------------------------------------------------- "Imagination is more important than knowledge..." [Albert Einstein]

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PhD Studentships in Computational Neuroscience at the University of Hertfordshire
by Torben-Nielsen, Benjamin April 28, 2016

April 28, 2016

We welcome applications for a funded PhD position in the Biocomputation Research Group at the University of Hertfordshire. The successful applicant will work on a project related to the detailed modelling of neuronal dynamics arising through dendritic processing and/or the analysis of morphological and circuit data. Potential projects in the fields of neuroinformatics and computational neuroscience include (but are not limited to): - Analysis of neuronal morphology and micro-circuitry. - Simulation of development of neuronal morphologies and tissues. - Simulation of dendritic processing on hardware. - Sensory processing and behaviour generation in individual invertebrate neurons. - Development of experimental robot controllers based on dendritic computation. - Structural plasticity at the single neuron and micro-circuitry level. More project ideas can be found here: http://www.dendrites.club/Positions.html The successful candidate will have extensive programming experience, preferably in Python (and/or other programming languages depending on the precise project). Depending on the project, experience with parallel programming (MPI, ZMQ), meshing software (VTK, CGAL, ITK, ...), or statistical analysis in R or Python are an advantage. In addition, we greatly value curiosity and a personal motivation to find out how things work. We collaborate closely with leading experimentalists and theoreticians all over the world, such as Prof. Adrian Moore (RIKEN, Japan), Prof. Erik De Schutter (OIST, Japan) and Dr. Marylka Uusisaari (Erasmus Medical Center Rotterdam, The Netherlands). The student will be based in the Biocomputation Group (biocomputation.herts.ac.uk) at the University of Hertfordshire and will be supervised by Drs. Ben Torben-Nielsen and Volker Steuber to whom informal enquiries can be sent. Successful candidates are eligible for a research studentship award from the University (approximately GBP 14,250 per annum bursary plus the payment of the student fees). Application forms can be obtained from Mrs Lorraine Nicholls, Research Student Administrator, STRI, University of Hertfordshire, College Lane, Hatfield, Herts, AL10 9AB, Tel: 01707 286083, l.nicholls @ herts.ac.uk. The short-listing process will begin on 30 May 2016. Dr. Ben Torben-Nielsen Senior Lecturer (Assistant professor) Biocomputation Group University of Hertfordshire, UK

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PhD Position: NEUROPHYSIOLOGY and BEHAVIOUR
by Andrea Burgalossi April 28, 2016

April 28, 2016

PhD Position: NEUROPHYSIOLOGY and BEHAVIOUR The lab of Andrea Burgalossi at the Werner Reichardt Centre for Integrative Neuroscience (CIN) in Tübingen is looking for PhD candidates in the field of Neurophysiology and Behaviour Research in our lab focuses on the cellular basis of behavior. We employ a combination of anatomical and electrophysiological techiques for studying how defined neural circuits contribute to sensory and high-level representations of the external world. Possible PhD projects will involve the use of state-of-the-art in vivo electrophysiology techiques, in combination with anatomical methods for neural circuit mapping (please see www.burgalossilab.com or contact Andrea Burgalossi for more details). Previous experience with electrophysiological methods is desirable, but not essential. Analytical and programming skills are a plus. Applications should contain a CV and names of at least two referees. Please send your application electronically to andrea.burgalossi(a)cin.uni-tuebingen.de. More info at http://burgalossilab.com/ http://www.cin.uni-tuebingen.de/ SELECTED PUBLICATIONS Burgalossi et al., Neuron (2011) 70:773-86 Tang et al, Nature Protocols (2014) 9:2369-81 Tang et al., Neuron (2014) 84:1191-7 Ray et al., Science (2014) 343:891-6 Diamantaki et al., Current Biology (2016) 26:536-41 -- Andrea Burgalossi, PhD Cellular and Synaptic Basis of Behaviour Werner Reichardt Centre for Integrative Neuroscience (CIN) Otfried-Müller-Straße 25 72076 Tübingen Tel: 0049-(0)7071 / 29 - 88797 Fax: +49-(0)7071 / 29-25006 Lab web: burgalossilab.com CIN web: http://www.cin.uni-tuebingen.de

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Fully funded PhD position, University of Birmingham, UK - Human movement
by Chris Miall April 27, 2016

April 27, 2016

Please bring this fully-funded 3-year PhD studentship to the attention of your students: Title: Quantification of motor performance in patients with impaired upper limb movements Supervisors: Chris Miall and Joe Galea,  Place: School of Psychology, University of Birmingham, UK There is growing need for accurate quantification of performance in patients with impaired upper limb movements. This arises from the need to assess recovery of movement following neurosurgery and stroke and to underpin a stratified approach to rehabilitation. We have recently developed methods to assess upper limb movements in a 2D workspace, using the resulting “performance map” to guide stroke rehabilitation. We have also developed methods to link the patients’ performance to muscle activation patterns. We now want to extend this work into 3D, to allow assessment of a broader range of movements, closer to normal activities, and in a shorter period of assessment. In addition, we wish to extend from stroke to assessment of functional recovery after neurosurgery, as a prelude to testing enhancement of recovery with brain stimulation: this would include patients with surgical repair of traumatic injury (road traffic accidents). Finally, we aim to extend our methods to link performance to muscle activation patterns in these continuous movements, in order to better understand the underlying deficits in motor control. The project will make use of a state-of-the-art 3D robotic arm, and assess performance by developing a 3D tracking task, in which a subject’s motor ability is progressively expanded from an initial slow and central focus to regions needing more extended limb postures and faster movement. An assistive algorithm in which the force-controlled robot guides movement towards the target will be used to help patients overcome weak and unstable movement, while still allowing assessment of performance speed, direction and stability. Actions in the robot-assisted task will be compared with free movement tracking in a virtual reality environment, with limb movements captured by existing motion tracking systems, but this motion tracking will ultimately be possible with a device such as the Microsoft Wii or smartphone. The comparisons will inform the potential to translate the assessment from the lab based robotic systems to the bedside. The outcome will be a set of diagnostic tests that deliver accurate quantification of upper limb movement control, suitable for triage of rehabilitation and for assessment of progressive recovery. The project is suited for students with an excellent first degree in neuroscience, engineering, robotics, or computer science. Masters training would also be advantageous. Experience in programming (Matlab or C) would be very valuable, and an interest in working with patients is important. There is studentship funding available for three years from the EPSRC, for UK or EU students only. Please contact Chris Miall (r.c.miall(a)bham.ac.uk<mailto:r.c.miall@bham.ac.uk>) or Joe Galea (j.galea(a)bham.ac.uk<mailto:j.galea@bham.ac.uk>) for further information or use FindaPhD: https://www.findaphd.com/search/ProjectDetails.aspx?PJID=74850 Deadline for application is 20-MAY-2016. ---------------------------------------------------------- Professor R.C. Miall Tel +44 (0)121 414 2867 School of Psychology, Fax +44 (0)121 414 4897 University of Birmingham, Mobile: +44 (0)7709 586997 Edgbaston, Email: r.c.miall(a)bham.ac.uk<mailto:r.c.miall@bham.ac.uk> Birmingham B15 2TT UK Web: http://prism.bham.ac.uk ----------------------------------------------------------

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PhD position in Neural Data Science / Retina
by Philipp Berens April 27, 2016

April 27, 2016

The labs of Philipp Berens (www.berenslab.org) and Thomas Euler (www.eulerlab.de) at the Center for Integrative Neuroscience (CIN) at the Eberhard-Karls-University of Tübingen are offering a PhD position (TV-L E13 65%) to be filled as soon as possible, with funding for 3 years. The successful candidate will combine experimental and computational approaches to study *neuronal cell type specific computations* in the mouse *retina*. The goal of the project is to provide an account of how the functional response properties of selected ganglion cell types arise from their anatomical structure, connectivity and dendritic integration properties. We envision a highly interdisciplinary project, where the successful candidate will perform state-of-the-art optical imaging and electrophysiological recordings and use computational approaches to analyze their data. The CIN offers a stimulating interdisciplinary scientific environment where research is carried out at all levels of neuroscience. The two labs are also part of the Institute for Ophthalmic Research (Eye Hospital Tübingen) and affiliated with the Bernstein Centre for Computational Neuroscience (BCCN). Furthermore, the project will be performed in collaboration with the lab of Tom Baden at the University of Sussex, UK (www.badenlab.org) We offer employment with a salary and social benefits based on the collective agreement for public service employees in the academic and science sector, TV-L. The Eberhard-Karls-University of Tübingen promotes gender equality and therefore particularly encourages female scientists to apply. Preferential status will be given to handicapped persons, if equally qualified. Requirements: • Background in statistics, machine learning and data analysis • Experience with electrophysiology and/or two-photon imaging or a strong desire to learn these techniques • Programming experience in Python, Matlab, R or similar • Strong quantitative skills Interested applicants should contact Dr. Philipp Berens (philipp.berens(a)uni-tuebingen.de) providing: • a curriculum vitae • a one-page description of past research experience & future research interests • a one-page description of the motivation for applying to this position • names of at least two people that could provide letters of reference Please compile your application in one single PDF-file. -- University of Tübingen http://philippberens.wordpress.com http://www.bethgelab.org

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3 Fully Funded PhD Positions at the Cognitive Robotics and Interaction Lab of the Robotics, Brain and Cognitive Sciences Department at the Italian Institute of Technology
by Alessandra Sciutti April 27, 2016

April 27, 2016

Apologies for cross-posting =========================================================================== PhD Openings at the Cognitive Robotics and Interaction Lab Robotics, Brain and Cognitive Sciences Department Italian Institute of Technology =========================================================================== In the spirit of the doctoral School on Bioengineering and Robotics the PhD Program for the curriculum Cognitive Robotics, Interaction and Rehabilitation Technologies offers interdisciplinary training at the interface between technology and life-sciences. The objective of the PhD program is to form scientists and research technologists capable of working in multidisciplinary teams on projects where human factors play a crucial role in technological development and design. Robotics and neuroscience researchers in RBCS share, as a fundamental scientific objective, the study of physical and social interaction in humans and machines (www.iit.it/rbcs ). Among the different research themes proposed I would like to advertise these three topics: VISUO-HAPTIC EXPLORATION STRATEGIES FOR OBJECT RECOGNITION MAKE HUMANOIDS UNDERSTAND HUMAN ACTIONS MULTISENSORY HUMAN-ROBOT INTERACTION The ideal candidates are students with a higher level university degree willing to invest extra time and effort in blending into a multidisciplinary team composed of neuroscientists, engineers, psychologists, physicists working together to investigate brain functions and realize intelligent machines, rehabilitation protocols and advanced prosthesis. The successful candidate will also have the opportunity to spend part of his/her PhD at the Osaka University and the University of Tokyo in the framework of the Marie Curie IRSES project CODEFROR (www.codefror.eu) , with the purpose of integrating his/her knowledge with the different expertise available at these institutes. International applications are encouraged and will receive logistic support with visa issues, relocation, etc. Below you can find more details related to the position and the instructions on how to apply. Application deadline: *****10 June 2016, Noon, Italian time***** Best regards, Alessandra Sciutti ----------------------------------------- Alessandra Sciutti (PhD) Researcher, Robotics Brain and Cognitive Sciences Dept. Istituto Italiano di Tecnologia Via Morego 30, 16163 Genova, Italy email: alessandra.sciutti(a)iit.it https://www.iit.it/people/alessandra-sciutti =========================================================================== Make humanoids understand human actions Tutors: Dr. Alessandra Sciutti, Dr. Francesco Rea, Prof. Giulio Sandini Department: RBCS (Istituto Italiano di Tecnologia) http://www.iit.it/rbcs =========================================================================== Description: Action understanding is a fundamental ability at the basis of human interaction. Neurophysiological evidence indicate that it is supported by a visuo-motor matching process: action observation activates in the observer a motor representation of the same action learned through execution, which yields to a rapid and automatic understanding of the action goal. Hence, visual action understanding requires a sensori-motor representation of the action, built by performing it and learning its motor and sensory consequences. The general aim of this project will be to provide the humanoid robot iCub with a similar visuo-motor matching skill in order to endow it with a human-like ability to understand human actions. In particular the robot will have to learn the motor (efference copy) and sensory (visual, joint angles, forces) consequences of its own actions to build a complete action representation. The research should determine which are the visual information needed to allow the recall of this model when the robot observes the same action performed by someone else. The work might take advantage of a computational system already available on the robot designed to localize the portion of the scene containing biological motion and extract some of its visual features . The successful candidate will also have the opportunity to spend part of his/her PhD at the Osaka University and the University of Tokyo in the framework of the Marie Curie IRSES project CODEFROR, with the purpose of integrating his/her knowledge with the different expertise available at these institutes. Requirements: degree in robotics, bioengineering, computer science, computer engineering, or related disciplines, attitude for problem solving, c++ programming. A background on machine learning is an asset. References: Sciutti A., Ansuini C., Becchio C. & Sandini G. 2015, Investigating the ability to read others intentions using humanoid robots, Frontiers in Psychology Cognitive Science, vol. 6,no. 1362 Noceti N., Sciutti A. & Sandini G. 2015, Cognition helps vision: recognizing biological motion using invariant dynamic cues, 18th International Conference on Image Analysis and Processing. Rizzolatti G, Craighero L. 2004 The mirror-neuron system. Annu Rev Neurosci 27:169192 Contacts: Applicants are strongly encouraged to contact the perspective tutors before they submit their application: alessandra.sciutti(a)iit.it, francesco.rea(a)iit.it , giulio.sandini(a)iit.it =========================================================================== Multisensory human-robot interaction Tutors: Dr. Francesco Rea, Dr. Alessandra Sciutti, Prof. Giulio Sandini Department: RBCS (Istituto Italiano di Tecnologia) http://www.iit.it/rbcs =========================================================================== Description: Humans interact with each other by exploiting a variety of communicative cues across many different sensory channels. Communication signals range from speech to sounds in the auditory domain, from gestures to facial expressions in the visual domain and to different types of physical contacts in the haptic domain. Moreover, these signals can be explicitly communicative, as pointing or waving, or implicit and unconscious, as gaze direction or body movements speed. The activity we propose is to endow the humanoid robot iCub with a library of sensory and motor skills supporting all these communication possibilities. The robot will have first to detect the presence of a potential human partner nearby and then establish a communication with him by making use of these multisensory cues. The research will leverage on the current social capabilities of the robot iCub, as gaze tracking, biological motion detection, biologically plausible motion generation, etc. The selected candidate will have to integrate the existing skills and develop the missing abilities, in order to enable iCub to interact naturally with non-expert users across multiple sensory domains. The successful candidate will also have the opportunity to spend part of his/her PhD at the Osaka University and the University of Tokyo in the framework of the Marie Curie IRSES project CODEFROR, with the purpose of integrating his/her knowledge with the different expertise available at these institutes. Requirements: Degree in robotics, bioengineering, computer science, computer engineering, or related disciplines, attitude for problem solving, c++ programming, as also willingness to make experiments with human participants. Strong motivation to work and adapt to a multidisciplinary environment. References:. Palinko O., Sciutti A., Rea F. & Sandini G., 2015, Eye Gaze Tracking for a Humanoid Robot in IEEE/RAS International Conference of Humanoids Robotics, Seoul, Korea, November 3-5 2015. Mosadeghzad M., Rea F., Tata M., Brayda L. & Sandini G. 2015, Saliency Based Sensor Fusion of Broadband Sound Localizer for Humanoids, 2015 IEEE International Conference on Multisensor Fusion and Information Integration (MFI 2015), San Diego, CA, USA, September 14-16, 2015; Sciutti A., Patanè L., Nori F. & Sandini G., 2014, Understanding object weight from human and humanoid lifting actions, IEEE Transactions on Autonomous Mental Development, vol. 6, no. 2, pp. 80-92 doi: 10.1109/TAMD.2014.2312399 Contacts: Applicants are strongly encouraged to contact the perspective tutors before they submit their application: francesco.rea(a)iit.it , alessandra.sciutti(a)iit.it, giulio.sandini(a)iit.it =========================================================================== Visuo-haptic exploration strategies for object recognition Tutors: Dr. Alessandra Sciutti, Dr. Francesco Rea, Prof. Giulio Sandini Department: RBCS (Istituto Italiano di Tecnologia) http://www.iit.it/rbcs =========================================================================== Description: In everyday situations human adults are capable of transferring information about objects from one sensory modality to the other. Objects explored visually can, at a later time, be analyzed, and recognized, by exploring them with our hands and, vice versa, we can visually recognize objects that have been previously explored haptically. This cross-modal transfer can be explained only through the use of a representation of objects merging visual and haptic information and perhaps by hypothesizing a shared exploratory strategy used when we explore objects visually or haptically. The main scientific objective of the project is to test this hypothesis by investigating how the transfer of information form one sensory modality to the other develops in humans and if different sensory channels share the same exploration strategy. A model of this ability could be implemented on the humanoid robot iCub to build and exploit a multisensory representation of manipulable objects, augmenting its ability to learn how to interact with the environment and with others. The successful candidate will conduct experimental investigation of human visuo-haptic explorative strategies by means of multiple techniques, as eye-tracking, motion capture and force measurements with ad hoc designed devices. The collected data will be used to model the exploration strategies both during healthy development and in presence of sensory deficits. The successful candidate will also have the opportunity to spend part of his/her PhD at the Osaka University and the University of Tokyo in the framework of the Marie Curie IRSES project CODEFROR, with the purpose of integrating his/her knowledge with the different expertise available at these institutes. Requirements: The candidate for this position must have either a degree in Computer Science Engineering, Bioengineering or equivalent, with high interests in human sciences, or alternatively a degree in Psychology, with proven background in programming toolboxes (Matlab, R). References:. Gori M., Sciutti A., Burr D. & Sandini G. 2011, Direct and indirect haptic calibration of visual size judgments, PLoS ONE, vol. 6,no. 10, e25599. [ Sann, C. and Streri, A. (2007), Perception of object shape and texture in human newborns: evidence from cross-modal transfer tasks. Developmental Science, 10: 399410. doi: 10.1111/j.1467-7687.2007.00593.x Gori, M., Del Viva, M., Sandini, G., & Burr, D. C. (2008). Young children do not integrate visual and haptic form information. Current Biology, 18(9), 694-698. Contacts: Applicants are strongly encouraged to contact the perspective tutors before they submit their application: alessandra.sciutti(a)iit.it, francesco.rea(a)iit.it , giulio.sandini(a)iit.it =========================================================================== How to apply =========================================================================== Please note that the positions are available through the PhD course of Bioengineering and Robotics, curriculum on Cognitive Robotics, Interaction and Rehabilitation Technologies, offered jointly by IIT and the University of Genoa. The official calls are available here: https://www.iit.it/phd-school under the section Research themes for the call for application to PhD Courses established in agreement with the Università degli Studi di Genova, XXXII cycle. Please have a look at the "tips and tricks" section which contains detailed instructions on how to apply and a list of documents you have to present. The link to the on-line application page is: http://www.studenti.unige.it/postlaurea/dottorati/XXXII/ In case of problems or questions related to the application procedure, please contact: anastasia.bruzzone(a)iit.it =========================================================================== Application deadline: *****10 June 2016, Noon, Italian time****** ===========================================================================

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