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NEURON Course at SFN 2018 meeting
by Ted Carnevale Sept. 5, 2018

Sept. 5, 2018

Space is still available for the NEURON course at this year's meeting of the Society for Neuroscience. Are you a lab director trying to decide whether to add computational modeling to your research program? A grad student or postdoc who is just getting started in modeling? An established NEURON user who wants to find out about NEURON's latest features? If so, this one-day course is for you! The course starts with a practical introduction that reviews basic concepts and presents a workflow for building and using models of cells and networks, and moves on to topics that include: --how to speed up simulations --how to use Python with NEURON (and take advantage of NEURON's GUI!) --how to model reaction-diffusion with the RxD class For more information and the registration form, see https://neuron.yale.edu/neuron/static/courses/sd2018/sd2018.html --Ted

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High Performance Computing workshop at SFN 2018 meeting
by Ted Carnevale Sept. 4, 2018

Sept. 4, 2018

This year's workshop on High Performance Computing Resources for Parallel Simulations and Data Analysis will be held on Saturday, Nov. 3, from 8:30 AM to 12:30 PM in downtown San Diego as a satellite to the 2018 meeting of the Society for Neuroscience. It will feature presentations from developers and users of powerful hardware and software tools for dealing with computationally-intensive modeling and data analysis tasks. For more information and a link to the registration form, see https://neuron.yale.edu/neuron/static/courses/nsg2018/nsg2018.html The registration deadline for this workshop is Friday Oct. 12, but you should sign up early because space is limited. --Ted

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Postdoctoral position available in computational muscle modelling
by Sang-Hoon Yeo Sept. 4, 2018

Sept. 4, 2018

Postdoctoral position available: Active spring muscle model - a new phenomenological model of skeletal muscle mechanics Understanding Machina Carnis, how our muscles mechanically generate movement, is one of the fundamental research questions in human movement science and also has significant implications in many application areas. Phenomenological muscle models, such as the Hill-type muscle model, have been widely used in studies on motor control and biomechanics. However, the performances of such models in predicting the dynamic contractile behaviours of the muscle, such as eccentric or sub-maximal contractions, are known to be far from accurate. This BBSRC (Biotechnology and Biological Sciences Research Council, United Kingdom)–funded postdoctoral research associate will join Dr Sang-Hoon Yeo’s research group to develop a new phenomenological model of the skeletal muscle mechanics. The key idea is to incorporate a newly proposed “active spring model” that involves titin as the third filament, together with actin and myosin filament, that actively regulates the mechanical behaviour of the muscle (see figures below). This new model is expected to be effectively utilized in various areas involving musculoskeletal simulation models, where the current prevalent use of the Hill-type model is identified as a major limiting factor. For two years starting in early 2019, the research associate will lead the first stage of the study focusing on in-vitro muscle/fiber experiments and model development. The research programme includes one-month visits to two prominent muscle biomechanics laboratories: 1) Prof Walter Herzog’s lab in University of Calgary (Calgary, Canada) and 2) Prof Kiisa Nisikawa’s lab in Northern Arizona University (Flagstaff, USA) to carry out data collection. Based on the collected data, the research associate will lead the data analysis, computational modelling and simulation of a new muscle mechanics model, and will also collaborate with other research associates to apply the developed muscle model to human biomechanics. The host institution, The University of Birmingham, is a Russell Group university in the vibrant City of Birmingham, United Kingdom. The university has produced eleven affiliated Nobel laureates and is also known as a cradle of modern muscle mechanics, dating back to the seminal work of Peter Rack and David Westbury. The School of Sport Exercise and Rehabilitation Sciences, where the research associate will be based, is a world-leading research institution in sport science, ranked 5th in the world (QS World Ranking, Sport-related subject). This highly interdisciplinary project is waiting for an ambitious and open-minded individual with substantial experience in computational motor control and muscle/musculoskeletal biomechanics. Individuals whose expertise lies in engineering and physical science and want to apply your skills in muscle biomechanics are also strongly encouraged to apply. Experience in wet-lab work is preferred but not strictly required. If you are interested to apply, please contact the principal investigator Dr Sang-Hoon Yeo (s.yeo(a)bham.ac.uk) to initiate discussion. Best wishes, Sang-Hoon -- Dr Sang-Hoon Yeo Lecturer in Biomechanics and Motor Control School of Sport, Exercise & Rehabilitation Sciences The University of Birmingham Edgbaston, Birmingham, B15 2TT, United Kingdom +44(0)121 414 8748

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Job ad: tenure-track open rank faculty positions in Cognitive Science
by Rajeev Raizada Sept. 4, 2018

Sept. 4, 2018

http://www.sas.rochester.edu/bcs/jobs/faculty.html Cognitive Scientist, Open Rank, University of Rochester The Department of Brain and Cognitive Sciences at the University of Rochester is seeking to hire multiple faculty members in the area of decision making and cognitive or sensorimotor planning at the Assistant (tenure-track) or Associate Professor level. Areas of interest include the roles of learning, prediction, memory, and attention in guiding goal-directed behavior, especially within complex, naturalistic environments. We are primarily interested in candidates using neuroimaging, computational (e.g., Bayesian decision theory, reinforcement learning), behavioral (including technology-driven approaches such as virtual reality), and/or developmental approaches. Both individuals and teams are encouraged to apply. Successful candidates will join a dynamic department with interests in the study of perception, motor control, learning, cognition, language, and development through combined neurobiological, computational, and behavioral research (http://www.sas.rochester.edu/bcs/) she or he will also be part of a university–wide community engaged in graduate and undergraduate education. Candidates should hold a PhD degree (or equivalent) in cognitive science, psychology, neuroscience, or another relevant domain, and should have considerable research experience. Applicants should submit a CV, a statement of research and teaching interests, and contact information for three referees via the following website: http://www.rochester.edu/faculty-recruiting. In addition, team applications should include a joint statement that describes the research synergies of the team. Questions concerning this position can be addressed to Robert Jacobs (rjacobs(a)ur.rochester.edu) and Duje Tadin (dtadin(a)ur.rochester.edu) co-chairs of the search committee. Review of applications will begin on November 1, 2018. The University of Rochester is an Equal Opportunity Employer with a strong commitment to diversity, and actively encourages applications from candidates from groups underrepresented in higher education. EOE / Minorities / Females / Protected Veterans / Disabled

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An Amazing Job Opportunity at Apple!
by Burak Yildiz Sept. 4, 2018

Sept. 4, 2018

We are looking for a Senior Systems Neuroscientist to join a great team of researchers at Apple in the San Francisco Bay Area. It's a unique opportunity to do research in industry. Please apply at this link: https://jobs.apple.com/us/search#&ss=Neuroscientist&t=0&so=&lo=0*USA&pN=0&o… Thanks, Burak Yildiz Sr. Research Scientist at Apple

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[meetings] Call for Participation : Workshop on Continual Unsupervised Sensorimotor Learning - Tokyo - September 17th
by Nguyen, Sao Mai Sept. 3, 2018

Sept. 3, 2018

Call for Participation Workshop on Continual Unsupervised Sensorimotor Learning at IEEE ICDL-Epirob 2018 - Tokyo - September 17th Website : http://conferences.au.dk/icdl-epirob-2018-workshop/ ============================================================ Invited Speakers - Jochen Triesch, Frankfurt Institute of Advanced Studies, Germany - David Ha, Google Brain - Lorenzo Jamone, Queen Mary University of London, UK Scope As the algorithms for learning single tasks in restricted environments are improving, new challenges have gained relevance. They include multi-task learning, multimodal sensorimotor learning in open worlds and lifelong adaptation to injury, growth and ageing. In this workshop we will discuss the developmental processes involved in the emergence of representations of action and perception in humans and artificial agents in continual learning. These processes include action-perception cycle, active perception, continual sensory-motor learning, environmental-driven scaffolding, and intrinsic motivation. The discussion will be strongly motivated by behavioural and neural data. We hope to provide a discussion friendly environment to connect with research with similar interest regardless of their area of expertise which could include robotics, computer science, psychology, neuroscience, etc. We would also like to devise a roadmap or strategies to develop mathematical and computational models to improve robot performance and/or to attempt to unveil the underlying mechanisms that lead to continual adaptation to changing environment or embodiment and continual learning in open-ended environments. The primary list of topics covers the following (but not limited to): - Emergence of representations via continual interaction - Continual sensory-motor learning - Action-perception cycle - Active perception - Environmental-driven scaffolding - Intrinsic motivation - Neural substrates, neural circuits and neural plasticity - Human and animal behaviour experiments and models - Reinforcement learning and deep reinforcement learning for life-long learning - Multisensory robot learning - Multimodal sensorimotor learning - Affordance learning - Prediction learning Organizers: - Nicolás Navarro-Guerrero, Aarhus University, Aarhus, Denmark - Sao Mai Nguyen, IMT Atlantique, France - Erhan Öztop, Özyeğin University, Turkey - Junpei Zhong, National Institute of Advanced Industrial Science and Technology (AIST), Japan Nguyen Sao Mai nguyensmai(a)gmail.com Researcher in Cognitive Developmental Robotics http://nguyensmai.free.fr

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2 open PhD positions in Sprekeler & Kempter labs on models of memory consolidation
by Richard Kempter Sept. 3, 2018

Sept. 3, 2018

Dear all, 2 PhD positions are open in the labs of Henning Sprekeler (TU Berlin) and Richard Kempter (HU Berlin), respectively, to be filled as soon as possible. Both positions are part of the recently established collaborative research center "Mechanisms and disturbances in memory consolidation: >From synapses to systems" https://fis.hu-berlin.de/converis/portal/Project/401700446?auxfun=&lang=en_… The project B01 in this research center focuses on developing computational models of systems memory consolidation, both conceptually and constrained by data from rodents and flies. The two PhD students are expected to collaborate closely. The ideal candidate has a background in computational neuroscience, strong mathematical and programming skills, and a keen interest in synaptic plasticity, learning and memory. If you are interested, please contact Henning Sprekeler or Richard Kempter. Please send the usual application documents (CV, letter of motivation, certificates of BSc and MSc, 2 references) until September 13, 2018. Interviews will take place on September 24/25 and/or September 28, i.e. around the Bernstein Conference in Berlin. Best wishes, Henning & Richard --- Prof. Dr. Henning Sprekeler (TU Berlin) Modelling of cognitive processes Technische Universität Berlin & Bernstein Center for Computational Neuroscience Berlin Sekr. MAR 5-3 Marchstr. 23 10587 Berlin, Germany Email: h.sprekeler(a)tu-berlin.de https://www.cognition.tu-berlin.de/menue/members/henning_sprekeler/ Phone: +49 (0)30 314 73557 Prof. Dr. Richard Kempter (HU Berlin) Theoretical neuroscience Humboldt-Universität zu Berlin & Bernstein Center for Computational Neuroscience Berlin Philippstr. 13, Building number 4 D-10115 Berlin, Germany Email: r.kempter(a)biologie.hu-berlin.de http://itb.biologie.hu-berlin.de/~kempter/index.html Phone +49-(0)30-2093-98404

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EEG and Machine Learning Postdoctoral Position at Stanford for Personalized Medicine
by Sanggyun Kim Sept. 1, 2018

Sept. 1, 2018

*EEG and Machine Learning Postdoctoral Position at Stanford for PersonalizedMedicine* The Laboratory of Amit Etkin, MD PhD at Stanford University is currently accepting applications for a postdoctoral fellow focused on machine learning and other sophisticated analyses of electroencephalography (EEG) data. This position is funded by an NIH Director’s Pioneer Award. The focus of the position is on creating and applying a variety of data analytic approaches to large EEG data sets (across individuals, or longitudinally within- individual) for the purpose of prediction of clinical outcome and tracking of clinical change. Particular emphasis is on connecting signal processing methodology to the classification challenges, potential use of deep learning, and building on applications from other related areas (e.g. brain-computer interface or other decoding efforts). It is anticipated that this work will contribute to development of clinic-translatable biomarkers, and will be part of FDA approval-directed efforts ongoing in the lab. The successful applicant will have a PhD in Engineering, Statistics, Computer Science, Neuroscience, Neurophysiology, Psychology, or related fields. Advanced experience with EEG data analysis and/or machine learning is required. Additionally, strong quantitative skills and a programming background are important. Duties will also include manuscript preparation, presentation of findings at conferences, and contribution to the preparation of grants. Laboratory and Stanford resources are extensive, MRI scanners, simultaneous EEG/fMRI, multiple high density EEG setups, and concurrent transcranial magnetic stimulation (TMS)/fMRI and concurrent TMS/EEG setups. Salary commensurate with experience. More information about our ongoing studies can be found at: http://etkinlab.stanford.edu. To apply, please send a curriculum vitae, a statement describing research interests and relevant background and the names of three recommenders, as well as relevant reprints/preprints of research articles to: Amit Etkin, MD, PhD Department of Psychiatry and Behavioral Sciences Stanford Neurosciences Institute Stanford University amitetkin(a)stanford.edu

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The Journal of Mathematical Neuroscience - recent articles
by Stephen Coombes Aug. 28, 2018

Aug. 28, 2018

The Journal of Mathematical Neuroscience publishes research articles on the mathematical modelling and analysis of all areas of neuroscience. The new Impact Factor of the journal is 2.414 The current list of journal articles is available at http://www.mathematical-neuroscience.com/ : Stochastic Hybrid Systems in Cellular Neuroscience Paul C. Bressloff and James N. Maclaurin https://mathematical-neuroscience.springeropen.com/articles/10.1186/s13408-… Data Assimilation Methods for Neuronal State and Parameter Estimation Matthew J. Moye and Casey O. Diekman https://mathematical-neuroscience.springeropen.com/articles/10.1186/s13408-… Bifurcations of Limit Cycles in a Reduced Model of the Xenopus Tadpole Central Pattern Generator Andrea Ferrario, Robert Merrison-Hort, Stephen R. Soffe, Wen-Chang Li and Roman Borisyuk https://mathematical-neuroscience.springeropen.com/articles/10.1186/s13408-… What Is Required for Neuronal Calcium Waves? A Numerical Parameter Study Markus Breit and Gillian Queisser https://mathematical-neuroscience.springeropen.com/articles/10.1186/s13408-… Investigating the Correlation–Firing Rate Relationship in Heterogeneous Recurrent Networks Andrea K. Barreiro and Cheng Ly https://mathematical-neuroscience.springeropen.com/articles/10.1186/s13408-… All articles are Open Access. ------------------------------------------------------- Stephen Coombes Professor of Applied Mathematics School of Mathematical Sciences Nottingham, UK Tel: 0115 846 7836 http://www.maths.nott.ac.uk/~sc/ ------------------------------------------------------- This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please contact the sender and delete the email and attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. Email communications with the University of Nottingham may be monitored where permitted by law.

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LACONEU Summer School - January 2019
by Patricio Orio Aug. 24, 2018

Aug. 24, 2018

----------------------------------------------------------------------- We have the pleasure to invite Graduate and Undergraduate students to participate in: ----------------------------------------------------------------------- LACONEU 2019 V Latin American Summer School in Computational Neuroscience Special Topic: Complex Systems and Network Connectivity January 7-25th, 2019 Valparaíso - CHILE http://www.laconeu.cl ----------------------------------------------------------------------- The principal aims of LACONEU 2019 Summer School are to disseminate and to develop Computational Neuroscience in Latin America, gathering researchers and students with common interests in the beautiful and historical city of Valparaiso, in Chile. LACONEU 2019 expects to foster a collaborative exchange between the attendees, researchers and students, based on fundamental theoretical and practical knowledge, and thus, to help the establishment of strong, long-term collaborations. This version also includes a WORKSHOP on January 16th, 2019 CONFIRMED SPEAKERS: - Demian Battaglia, Theoretical Neuroscience Group, INT, France - Joana Cabral, University of Oxford, UK - Bruno Cessac, INRIA Sophia-Antipolis, France - Dante Chialvo, Universidad Nacional de San Martín, Argentina - Rodrigo Cofré, Universidad de Valparaíso, Chile - Mauro Copelli, Federal University of Pernambuco, Brazil - Maxime Descoteaux, Université de Sherbrook, Canada - Wael El-Deredy, Universidad de Valparaíso, Chile - Pamela Guevara, Universidad de Concepción, Chile - María-José Escobar, Universidad Técnica Federico Santa María, Valparaíso, Chile - Henrik Jensen, Imperial College London, UK - Thierry Mora, École Normale Superiéure, France - Patricio Orio, Universidad de Valparaíso, Chile - Adrián Palacios, Universidad de Valparaíso, Chile - Tomás Pérez Acle, Fundación Ciencia y Vida, Chile - Peter Robinson, The University of Sydney, Australia - Fernando Rosas, Imperial College London, UK - Inés Samengo, Centro Atómico Bariloche e Instituto Balseiro, Argentina IMPORTANT DATES - Call for Applications: June 8th, 2018 - Application submission deadline: September 15th, 2018 (visit the webpage to see the details) - Acceptance notification: October 31st, 2018 TRAVEL GRANTS ARE AVAILABLE FOR LATIN AMERICAN STUDENTS Looking forward to see you in January! *Prof. Patricio Orio* Centro Interdisciplinario de Neurociencias de Valparaíso *CINV* Facultad de Ciencias, *Universidad de Valparaíso, Chile* +56 32 299 5538 / 32 250 8040

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Postdoc at RIKEN Center for Brain Science, Japan
by Taro Toyoizumi Aug. 23, 2018

Aug. 23, 2018

A postdoc position is available at Lab for Neural Computation and Adaptation, RIKEN Center for Brain Science, Japan http://toyoizumilab.brain.riken.jp/ to work with Taro Toyoizumi. Job: https://cbs.riken.jp/en/careers/20180817_w929_t_toyoizumi_r.html Our lab is interested in modeling activity-dependent synaptic plasticity and dynamic information processing by the neurons in the brain. We seek highly motivated postdoctoral researchers with a strong analytical background and interest in neuroscience. Applicants should have a PhD in physics, neuroscience, mathematics, computer science, engineering, or a related area. Applicants should email a CV and a list of publications to toyoizumilab(a)ml.riken.jp In addition, applicants should organize two letters of recommendation, to be sent by the referees to toyoizumilab(a)ml.riken.jp

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NEST 2.16.0 released
by Hans Ekkehard Plesser Aug. 21, 2018

Aug. 21, 2018

Dear colleagues! I am very excited to inform you that we have released version 2.16.0 of NEST, the Neural Simulation Tool, today. NEST 2.16.0 is the result of 89 merged pull requests by 39 developers since we released NEST 2.14.0 in October 2017. Most notably, this release includes a new infrastructure for the storage of connections, which reduces the memory consumption and network build times (Jordan et al., 2018) and extends the rate model framework for novel use-cases (Senden et al., 2018). As usual, it also includes numerous bug fixes and minor improvements. At the same time, the we have tried to minimize changes to the user interface, so scripts that worked with NEST 2.14.0 should work with NEST 2.16.0 as well. One exception is that global spike detectors have been removed, but this should be relevant only for users on petascale machines. For a detailed list of changes, please see https://github.com/nest/nest-simulator/releases/tag/v2.16.0 The citation for NEST 2.16.0 is Linssen, Charl, Lepperød, Mikkel Elle, Mitchell, Jessica, Pronold, Jari, Eppler, Jochen Martin, Keup, Chrisitan, … Plesser, Hans Ekkehard. (2018, August 27). NEST 2.16.0 (Version 2.16.0). Zenodo. http://doi.org/10.5281/zenodo.1400175 We would like to encourage you to switch to NEST 2.16.0 as soon as possible and are looking forward to hearing about your experiences! On behalf of the NEST Initiative, I would like to thank all developers who have contributed to NEST 2.16.0 and especially our release managers Dennis Terhorst and Jochen Eppler for wrapping it all up! Best regards, Hans Ekkehard Plesser President, The NEST Initiative -- Dr. Hans Ekkehard Plesser Associate Professor Faculty of Science and Technology Norwegian University of Life Sciences PO Box 5003, 1432 Aas, Norway Phone +47 6723 1560 Email hans.ekkehard.plesser(a)nmbu.no Home http://arken.nmbu.no/~plesser

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Human Neocortical Neurosolver: A new tool for circuit level investigation of MEG/EEG data
by Stephanie Jones Aug. 21, 2018

Aug. 21, 2018

We are excited to announce the first release of a new user-friendly software package for circuit level interpretation of human EEG/MEG data: Human Neocortical Neurosolver (HNN). The foundation of HNN is a computational neural model that simulates the electrical activity of the neocortical cells and circuits that generate the primary electrical currents underlying EEG/MEG recordings. HNN is a free open source package that was designed for researchers and clinicians, without computational neural modeling experience, to develop and test hypothesis on the circuit origin of their data. We provide tutorials on how to import your data and to begin to understand the underlying neural mechanisms. The tutorials focus on some of the most commonly measured signals, including event related potentials and low frequency alpha, beta and gamma rhythms. We are eager to help users get started and have developed a user forum for feedback and questions. HNN is distributed at https://hnn.brown.edu <https://hnn.brown.edu/>. HNN is being developed by a collaborative team at Brown, MGH and Yale. HNN developments are funded by the National Institute of Biomedical Imaging and Bioengineering through the BRAIN Initiative: Theories, Models, and Methods of Analysis of Complex Data from the Brain. ******************************************* Stephanie R. Jones, PhD - on behalf of the development team Associate Professor Brown University Department of Neuroscience Stephanie_Jones(a)Brown.edu https://www.brown.edu/research/labs/jones/

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Full-time industry position: Computational Neuroscience / Neuromorphic Machine Learning
by Dylan Muir Aug. 17, 2018

Aug. 17, 2018

aiCTX is an ultra-low-power neuromorphic computing startup / spin-off of the Institute of Neuroinformatics of the University of Zurich and the ETH Zurich. aiCTX has an immediate opening for a Neuromorphic Machine Learning R&D Engineer We are looking particularly for comp. neurosci. researchers, with a background in theory and/or modelling of spiking neural networks. This position is for a full-time on-going contract, in Zürich Switzerland. We also have paid internships available for qualified candidates. Please see the job posting for more details, and to apply: http://bit.ly/aiCTX_job2 <http://bit.ly/aiCTX_job2>

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Funded mathematics PhD position - Designing the dynamics of coupled oscillators - University of Exeter
by Purcell, Sarah Aug. 17, 2018

Aug. 17, 2018

Funded mathematics PhD position - Designing the dynamics of coupled oscillators University of Exeter<https://www.exeter.ac.uk/>, UK Supervisors: - Dr Christian Bick<http://empslocal.ex.ac.uk/people/staff/cb618/> - Dr Kyle Wedgwood <http://emps.exeter.ac.uk/mathematics/staff/kcaw201> The University of Exeter's College of Engineering, Mathematics and Physical Sciences is inviting applications for a fully-funded PhD studentship to commence in September 2018 or as soon as possible thereafter. For eligible students the studentship will cover tuition fees in full plus an annual tax-free stipend of at least £14,777 for 3.5 years full-time, or pro rata for part-time study. The student would be based in the Department of Mathematics in the College of Engineering, Mathematics and Physical Sciences in Exeter. Networks of interacting oscillatory units are abundant in nature and technology. Their function and dynamics governs crucial aspects of our lives, ranging from the stability of power grids to the dynamics of the human brain. The dynamics of oscillator networks depends on (1) which oscillators interact with which other oscillator and (2) how oscillators interact with one another. This project will contribute to the question how the interplay between these two factors shape the network dynamics. The main aim of this PhD project is to develop theoretical and numerical approaches how oscillator networks can be designed to have specific interactions. This will allow to generate networks that exhibit a range of synchronized and locally synchronized dynamics. Moreover, the supervisor is currently collaborating with the experimental group of Istvan Z Kiss in St Louis (USA) who are working on electrochemical oscillators. Hence, there may be an opportunity to help implement the theoretical results in real-world experimental systems. The studentship will be awarded on the basis of merit for 3.5 years of full-time study to commence in September 2018 or on a mutually agreed date as soon as possible thereafter, and is subject to confirmation of funding. For full details please see the PhD advert<https://www.exeter.ac.uk/studying/funding/award/?id=3189>. If you have any questions, please get in touch with Dr Christian Bick<http://empslocal.ex.ac.uk/people/staff/cb618/> or Dr Kyle Wedgwood. <http://emps.exeter.ac.uk/mathematics/staff/kcaw201>

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Postdoc available in Brinkman group at Stony Brook University
by Braden Brinkman Aug. 16, 2018

Aug. 16, 2018

A postdoctoral position is available in Braden Brinkman's group in the Department of Neurobiology and Behavior at Stony Brook University, located on Long Island in New York State. The Brinkman group studies mathematical models of sensory coding and network dynamics, with a focus on how environmental and physiological constraints shape coding and computation in the brain. For more information on our work and the department, please visit https://medicine.stonybrookmedicine.edu/node/14355 Candidates must have a strong background in quantitative methods; background in statistical physics is a plus. Please submit applications through Stony Brook's jobs portal here (job # 1802370): https://stonybrooku.taleo.net/careersection/post_docs/jobdetail.ftl?job=180… Complete applications must include 1. C.V. including a list of publications/preprints, research experience, and education 2. A 1-2 page summary of previous research accomplishments 3. A 1-2 page description of future research goals and interests 4. 2-3 references letters from scientists familiar with the candidates work Items 1-3 may be attached through the online application portal. Letter writers should send letters directly to braden.brinkman(a)stonybrook.edu Deadline for applications is Sept 1. Please email braden.brinkman(a)stonybrook.edu with any questions.

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Contrat post-doctorant 2018-2020 - Laboratoire FrontLAB, Institut du Cerveau et de la Moelle Epinière (ICM), PARIS (FR)
by Bénédicte BATRANCOURT Aug. 16, 2018

Aug. 16, 2018

*Contrat post-doctoral 2018-2020* Laboratoire FrontLAB, Institut du Cerveau et de la Moelle Epinière (ICM), PARIS Inserm, U 1127, CNRS, UMR 7225, Sorbonne Universités, UPMC Univ Paris 06, UMR S 1127 https://icm-institute.org/fr/ L’Institut du Cerveau et de la Moelle épinière (ICM) est un centre de recherche de dimension internationale, innovant dans sa conception comme dans son organisation. En réunissant en un même lieu malades, médecins et chercheurs, l’objectif est de permettre la mise au point rapide de traitements pour les lésions du système nerveux afin de les appliquer aux patients dans les meilleurs délais. D’un point de vue scientifique, les équipes de recherche sont indépendantes, mais alliées entre elles par des Programmes Transversaux de Recherche favorisant la mutualisation des compétences. La recherche se décline selon trois modèles : la recherche fondamentale orientée vers les domaines fondamentaux d’une discipline, la recherche clinique dans laquelle le sujet participe à des protocoles pour améliorer la connaissance d’une pathologie ou d’une thérapeutique et la recherche translationnelle qui permet aux patients de bénéficier plus rapidement des innovations diagnostiques et thérapeutiques. La recherche à l’ICM couvre 4 domaines scientifiques majeurs : Neurosciences Moléculaires et Cellulaires, Neurophysiologie intégrée, Neurosciences Cognitives, Neurosciences Cliniques et Translationnelles. Dans notre équipe FRONTlab (Richard LEVY, Bruno DUBOIS), nous travaillons sur les fonctions mentales élaborées par les lobes frontaux. L’un des enjeux majeurs des neurosciences est de connaître en profondeur les fonctions frontales afin de *comprendre comment sont élaborés et contrôlés nos comportements les plus complexes* (prise de décision, planification raisonnement, créativité, jugement moral, interactions sociales…). Une connaissance approfondie des lobes frontaux est aussi indispensable pour mieux traiter les nombreuses maladies neurologiques et psychiatriques s’accompagnant d’une atteinte des lobes frontaux (maladie d’Alzheimer, AVC, traumatismes crâniens, dépression, schizophrénie…). Nos objectifs sont de mieux cerner l’implication des lobes frontaux dans le comportement humain et les fonctions intellectuelles les plus élaborées, et de transférer les connaissances acquises vers la pratique médicale. Nous proposons un contrat de postdoctorant de 2 ans afin de participer au développement du projet ECOCAPTURE, permettant d’évaluer l’apathie de façon quantitative et objective, par l’observation du sujet en condition proche de la vie réelle. L’étude ECOCAPTURE se déroule dans la plate-forme de recherche de psychologie expérimentale de l'ICM (PRISME) qui est consacrée à l'exploration fonctionnelle du comportement humain dans des situations écologiques. L’étude ECOCAPTURE a débuté en septembre 2017, et porte sur 75 patients (Démence Fronto-Temporale, Parkinson, Dépression) et 60 volontaires sains. A ce jour 16 participants ont été inclus (8 patients et 8 volontaires sains). Dans cette étude et la phase dite de laboratoire, *l’apathie est évaluée en condition observationnelle* grâce à un système qui enregistre le comportement du sujet à l’aide d’un système à base de vidéo et de capteurs, durant une session expérimentale de 45 mn « proche de la vie réelle » qui se déroule dans une salle d’attente, selon un scénario contrôlé. L’objectif principal de l’étude ECOCAPTURE est de montrer que l’outil ECOCAPTURE basé sur des enregistrements vidéo et des capteurs d’activité et de mouvements, possède une valeur d’outil diagnostique de l’apathie. La méthode générale concerne en l’extraction de métriques comportementales à partir des données vidéo et des données extraites d’un accéléromètre 3D afin de différencier le comportement des patients de celui des sujets volontaires sains. L’étude ECOCAPTURE est la première étape d'un programme en trois phases visant à mieux évaluer l'apathie en situation « proche de la vie réelle » et à proposer de nouveaux traitements. La première phase dite « de laboratoire » a pour objectif la mise en œuvre d’un outil diagnostic de l'apathie produisant une « signature simple du comportement dirigé vers un but » ou « signature comportementale de l’apathie » permettant d'évaluer l'apathie, en situation de vie quotidienne, de façon objective (un marqueur d'apathie). Nous espérons que la création et la validation de cet outil ECOCAPTURE rendra possible dans une deuxième phase, son utilisation en clinique ainsi qu’une évaluation au domicile *ECOCAPTURE@home* avec un système de capteurs embarqués : un « holter d'apathie ». Une troisième phase visera à proposer un traitement des conséquences de l'apathie dans la vie quotidienne. L’objectif de ce contrat postdoctoral est de développer la deuxième phase : *ECOCAPTURE@home*. Nous recherchons un candidat titulaire d’un doctorat en neurosciences, sciences cognitives ou en bioinformatique, de formation : psychologue, neuropsychologue, neurologue, psychiatre, éthologue ou ingénieur biomédical. Le candidat devra posséder plusieurs compétences parmi la liste suivante : neuropsychologie, éthologie, mesure du comportement, instruments neuropsychologiques, qualités psychométriques d’un outil d’évaluation, capteurs et actigraphie, statistiques, fusion de données, classification. Une bonne connaissance de la langue française est indispensable afin de permettre les interactions avec les patients et leurs aidants. Ce contrat permettra à un chercheur motivé de participer à un projet multidisciplinaire et très original, de collaborer avec des chercheurs de disciplines diverses, de bénéficier d’un environnement scientifique international et stimulant, et de participer à la vie de l’équipe FrontLAB constituée d’un groupe de 12 PI chacun responsable d’un projet dédié à la compréhension du lobe frontal, et accueillant chaque année de nombreux étudiants. *La rémunération sera établie en fonction du barème de rémunération des contractuels Inserm* Merci d’envoyer votre CV avec une lettre de motivation et les noms et emails de deux personnes de référence à Bénédicte BATRANCOURT ( benedicte.batrancourt(a)upmc.fr) avant le 30 septembre 2018. Bénédicte Batrancourt ICM, UPMC, INSERM UMR_S 1127, CNRS UMR 7225 Hôpital Pitié-Salpêtrière 47 Boulevard de l’Hôpital F-75651 PARIS Cedex 13 Tel : 01 57 27 41 59 Tel : 06 60 44 79 79 benedicte.batrancourt(a)upmc.fr http://icm-institute.org ----------------------------------- Afin de contribuer au respect de l'environnement, merci de n'imprimer ce mail qu'en cas de nécessité.

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Up to 8 PhD fellowships in Cognitive Neuroscience at SISSA, Trieste, Italy
by Alessandro Treves Aug. 16, 2018

Aug. 16, 2018

SISSA is an elite postgraduate research institution, focused on Maths, Physics and Neuroscience. It operates in English: many among its students and faculty are not Italian. Campus above Trieste, overlooking the Gulf. Research approaches in the CNS PhD https://phdcns.sissa.it/ span the range from cognitive psychology and imaging in humans to behavioural neuroscience and multiple single-unit recording in rats, mathematical and computational modeling; with research groups led by Domenica Bueti, Davide Crepaldi, Mathew Diamond, Chris Mathys, Raffaella Rumiati, Alessandro Treves and Davide Zoccolan. Allied approaches are pursued in other SISSA PhDs. All admitted students receive a 4-year fellowship and engage full-time in research based in Trieste, with limited coursework in the first few months, talks and seminars throughout the year and a TEX event in the summer, see https://indico.sissa.it/event/26/ First deadline for EU candidates: March 2, 2018, for nonEU: March 31, 2018 -- Alessandro Treves http://people.sissa.it/~ale/limbo.html SISSA - Cognitive Neuroscience, via Bonomea 265, 34136 Trieste, Italy +39-040-3787623 Ambassador (BlaBlaCar) +39-349-2504602

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Save the date ICTALS2019 (IWSP9), Exeter, UK, September 2nd – 5th 2019
by Goodfellow, Marc Aug. 15, 2018

Aug. 15, 2018

Dear All, The International Conference for Technology and AnaLysis of Seizures, 2019 (ICTALS2019) will take place at the University of Exeter, September 2nd – 5th 2019. The goal of this conference is to bring together neurologists, neuroscientists, researchers from quantitative disciplines and people with lived experience of epilepsy in order to work as a community to advance our understanding of epilepsy and develop practical ways to improve diagnosis and treatment. This is the second ICTALS conference, which is an evolution of the previous International Workshop on Seizure Prediction (IWSP) series. The theme for this year’s conference will be: “The Epilepsy Journey: from first seizure to treatment and beyond”. We will emphasise how advances in our understanding of the dynamics of brain networks can be used to make a difference to people with epilepsy at all points of their journey: from elucidating the causes of the first seizure to diagnosing epilepsy, understanding how ictogenic networks give rise to recurrent seizures and how this insight can inform personalised treatment. To encourage this focus on translatable output of research we will seek to include all relevant communities. In addition to focussing on current scientific, clinical and technological advances, we will take steps to increase accessibility for people with lived experience of epilepsy. We have begun to create a webpage for the conference, which we will populate with further information in due course. You can find this at: http://exeter.ac.uk/ictals2019 In the mean time, please save the date above in your diary and we will follow up with further information, including registration and programs over the next few months. Best wishes Marc Goodfellow (on behalf of the local organising committee). https://emps.exeter.ac.uk/mathematics/staff/mg401

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MRC Skills Development Fellowships at the University of Exeter
by Purcell, Sarah Aug. 15, 2018

Aug. 15, 2018

Dear Colleagues, The University of Exeter<http://www.exeter.ac.uk/> is delighted to be partnering with the Medical Research Council<https://mrc.ukri.org/> (MRC) to offer exceptional candidates the opportunity to hold a 3 year Skills Development Fellowship, commencing between November 2018 and March 2019. MRC Skills Development Fellowships are prestigious personal awards, aimed at exceptional early career researchers with a strong background in mathematical, statistical, computational or biophysical modelling and analysis, or for more advanced researchers from a biomedical or clinical background who are seeking to develop strong quantitative skills. The University of Exeter has a wide variety of opportunities to develop these quantitative skills in the context of neuroscience and neurology, endocrinology and metabolism, and primary care population and health services research. Successful applicants will be housed within the brand new £52M Living Systems Institute<https://www.exeter.ac.uk/livingsystems/> where they will be co-located with 8 other MRC Fellowship holders. They will receive 3 years of funding with substantial budgets for travel, skills development and consumables as determined by their project needs. As part of the Fellowship candidates will also have the opportunity to spend up to a year in an internationally leading second research centre. Additionally, candidates will receive a £5,000 career development budget from the University of Exeter. Full details of this opportunity are available from www.exetermrcsdf.ac.uk<http://www.exetermrcsdf.ac.uk/> and in the information video<https://youtu.be/LKgl1WqiRgU>. Applications are now open with a closing date of 13th September 2018. Please do share these details with any potentially interested parties.

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Funded postdoc positions: Synaptic and network mechanisms of visual perception
by Haider, Bilal Aug. 14, 2018

Aug. 14, 2018

The Haider Lab in the Dept. of Biomedical Engineering (BME) at Georgia Tech & Emory University seeks highly motivated and skilled postdoctoral fellows for a 3-5 year NIH funded project examining synaptic and network mechanisms supporting sensory perception. The position is available immediately and conforms to NIH standards for salary and benefits. The project offers significant opportunity to use cutting-edge research techniques in vivo during visual perception. These include 1) neural population recording with high-density silicon electrodes, 2) optogenetic circuit manipulation, and 3) whole-cell patch-clamp recording during behavior. The ideal candidate has expertise in patch clamp or multi-electrode electrophysiology in vitro or in vivo, and quantitative skill in data acquisition and analysis (preferably with MATLAB). Candidates should have excellent written and verbal communication skills, an inquisitive mindset, and enthusiasm to work in a multi-disciplinary team. The position is funded for up to 5 years, pending satisfactory performance upon annual review. We are enthusiastic to form a diverse, international research group. All candidates will be mentored for independent career development. There is a strong, multidisciplinary concentration of labs focusing on Neuroscience at GT and at Emory. Atlanta is vibrant, green, diverse, and one of the most affordable and livable major cities of the US. Applications should include a CV, a brief statement of research goals, expected date of availability, and names and contact information of three references. Please email materials to bilal.haider(a)bme.gatech.edu Further information and recent lab publications can be found at haider.gatech.edu Bilal Haider, Ph.D. Assistant Professor Coulter Dept. of Biomedical Engineering Georgia Tech & Emory University 313 Ferst Drive, Suite 3104 Atlanta, GA 30332 tel: +1 404 385 4935 fax: +1 404 385 5044 site: haider.gatech.edu<http://haider.gatech.edu/> twitter: @haiderlab<https://twitter.com/haiderlab>

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Postdoctoral Research Fellow roles - EPSRC Centre for Predictive Modelling in Healthcare, University of Exeter
by Purcell, Sarah Aug. 13, 2018

Aug. 13, 2018

2 Postdoctoral Research Fellow roles - EPSRC Centre for Predictive Modelling in Healthcare University of Exeter, UK Two Research Fellows are required to support the EPSRC Centre for Predictive Modelling in Healthcare<http://emps.exeter.ac.uk/mathematics/research/pmh/> (CPMH). The roles are available from 01 October 2018, or a mutually agreeable date soon thereafter, for a period of up to 24 months. The CPMH is a £2M award which brings together outstanding scientists from mathematics, statistics, computer science and our medical school. With an additional £7M in research funding, the interface between mathematics, computer science and healthcare is one of the most rapidly expanding areas within the University. The Centre forms part of the Quantitative Biology and Medicine Initiative, which currently consists of 15 PDRAs, 9 fellowship holders, and 10 PhD students. The successful candidates are expected to focus on one of the following areas, depending on their interests and background: (a) Transient dynamics of networks with multiple time scales: there are significant mathematical challenges from disease modelling that require the development of new techniques to understand transient behaviour in multiple timescale systems, especially for systems where there is not a simple factorization into fast and slow subsystems. (b) Numerical investigation of models of cardiac diseases: involving multi-scale excitable and transient dynamics, with a focus on re-entrant arrhythmias specifically concerning development and improvements of antiarrhythmia pacing, low-voltage defibrillation and catheter ablation. [In partnership with cardiologists at the RD&E Hospital, Exeter]. (c) Mathematical modelling and analysis of EEG in dementia: EEG analysis has shown promise in differentiating people with dementia from healthy older adults, and therefore could provide indications for early diagnosis. We will use mathematical models to better understand why differences in EEG occur and combine models and analysis to build improved diagnostic markers. [In partnership with colleagues in Bath, Bristol & Reading]. (d) Mathematical modelling and analysis of polygenic disease: conditions such as diabetes and dementia depend on the simultaneous presence of several genes; they are not inherited as simply as single-gene diseases and therefore require the development of new mathematical approaches to improve diagnosis via e.g. the interpretation and uncertainty quantification of proportions of patients in large data sets (e.g. UK Biobank) using genetic risk scores. [In partnership with diabetologists and neurologists from the Medical School]. For full details please see the job advert<https://www.jobs.ac.uk/job/BLL261/postdoctoral-research-fellow/>. Application deadline: 20 August 2018. For further information please contact Centre Manager Sarah Purcell, email S.Purcell(a)exeter.ac.uk<mailto:S.Purcell@exeter.ac.uk> or telephone 01392 726447.

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PhD deeplearning in neuroimaging - Amsterdam
by Rajat Thomas Aug. 10, 2018

Aug. 10, 2018

PhD student “Deep learning analysis of neuroimaging data” The job Amsterdam UMC (University of Amsterdam) has a vacancy for a PhD student. The aim of the project is to develop deep neural network (DNN) analysis of neuroimaging data to enable neuroimaging biomarker development. Neuroimaging data consist of thousands of features but the training of DNNs is typically hampered by limited samples. You will use large existing datasets (>10.000 subjects) for the development of DNN analysis and test the resulting models in smaller samples to develop neuroimaging biomarkers for psychiatric disorders. Our department The project is a collaboration with Phillips Research and funded by a public-private partnership grant from the Netherlands Organisation for Scientific Research (NWO). You will closely collaborate with experts in DNN and neuroimaging data analysis from Philips. The project is embedded within the Department of Psychiatry of the Amsterdam UMC, and you will be supervised by Dr. Rajat Thomas (deep learning) and Prof. Guido van Wingen (neuroimaging). Your experience We are looking for a highly talented and dedicated PhD student with a (nearly completed) Master’s degree in a computer science, artificial intelligence, bioinformatics, mathematics, statistics, engineering, or related discipline. You have a strong background in mathematics, statistics, and programming, preferably in one of the major frameworks for deep learning like TensorFlow, Pytorch and/or Keras, and preferably have experience with medical image analysis. You have good communicative skills and are well able to work independently as well as in a team. You are proficient in English in speech and writing. Dutch is a plus but not required. Our offer We offer a challenging research project and excellent resources for the duration of 4 years. The starting date is preferably around December 2018. Compensation is according to the collective agreement (CAO-UMC), and amounts from EUR 2.279,- gross per month in the first year to EUR 2.919,- in the fourth year. You will be employed by AMC Medical Research BV. Your application For more information, please contact Dr. Rajat Thomas (r.m.thomas(a)amc.nl) or Prof. Guido van Wingen (g.a.vanwingen(a)amc.nl) Please apply online before September 8 at https://werkenbijamc.nl/vacatures/phd-student-deep-learning-analysis-of-neu…

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Postdoc deeplearning in medical imaging - Amsterdam
by Rajat Thomas Aug. 10, 2018

Aug. 10, 2018

Postdoctoral / Ph.D. researcher “Deep learning analysis of neuroimaging data” The job Amsterdam UMC (University of Amsterdam) has a vacancy for a postdoctoral researcher. The aim of the project is to develop deep neural network (DNN) analysis of neuroimaging data to enable neuroimaging biomarker development. Neuroimaging data consist of thousands of features but the training of DNNs is typically hampered by limited samples. You will use large existing datasets (>10.000 subjects) for the development of DNN analysis and test the resulting models in smaller samples to develop neuroimaging biomarkers for psychiatric disorders. Our department The project is a collaboration with Phillips Research and funded by a public-private partnership grant from the Netherlands Organisation for Scientific Research (NWO). You will closely collaborate with experts in DNN and neuroimaging data analysis from Philips. The project is embedded within the Department of Psychiatry of the Amsterdam UMC, and you will be supervised by Dr. Rajat Thomas (deep learning) and Prof. Guido van Wingen (neuroimaging). Your experience We are looking for a postdoctoral fellow with a (nearly completed) PhD in computer science, artificial intelligence, bioinformatics, mathematics, statistics, engineering, or related discipline. You have a strong background in mathematics, statistics, and programming in one of the major frameworks for deep learning like TensorFlow, Pytorch and/or Keras, and preferably have experience with medical image analysis. You have excellent communicative skills in written and spoken English (Dutch is a plus but not required) and are well able to work independently as well as in a team. You have an interest in neuroscience and developing biomedical applications, and as postdoctoral researcher will assist in the supervision of junior researchers. Our offer We offer a challenging research project and excellent resources for the duration of 1 year with a possible extension of 2 years. The starting date is preferably around December 2018. Compensation is according to the collective agreement (CAO-UMC), depending on education and experience. You will be employed by AMC Medical Research BV. Your application For more information, please contact Dr. Rajat Thomas (r.m.thomas(a)amc.nl) or Prof. Guido van Wingen (g.a.vanwingen(a)amc.nl) Please apply online at https://werkenbijamc.nl/vacatures/postdoctoral-researcher-deep-learning-ana…

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ESI SyNC Conference 2018 - Integrative Mechanisms of Cognitive Neuroscience | DEADLINE APPROACHING
by André Castro Aug. 9, 2018

Aug. 9, 2018

Dear all, this is a kind reminder that ESI Sync 2018 is approaching. The registration deadline is 15th August and only a limited number of places are available. This year’s theme is "Integrative Mechanisms in Cognitive Neuroscience: Crossroads to the Brain”. The conference will begin in the morning of 30th August and end in the evening of 31st August 2018 at the Ernst Strüngmann Institute in Frankfurt, Germany. Our confirmed invited speakers are the following: - David Melcher (University of Trento, Italy) -- "Temporal rhythms of visual perception" - Dimitri Kullmann (UCL, UK) -- "Hippocampal gamma oscillations: dynamical properties and closed-loop manipulation" - Matteo Carandini (UCL, UK) -- "Local and global neural correlates of vision, action, and reward" - Biyu He (NYU, US) -- ''Large-scale brain dynamics underlying visual perceptual awareness'' - Tobias Donner (UKE, Germany) -- tba - Wim Vanduffel (KU Leuven, Belgium) -- "Optogenetic interrogation of the attention network in primates" - Anitha Pasupathy (University of Washington, US) -- "Encoding things and stuff: multiplexed form and texture signals in primate V4" - Floris de Lange (Radboud University, Netherlands) -- "How do prior expectations influence sensory computations?" - Hannah Monyer (Heidelberg University, Germany) -- ''GABAergic neurons – the cellular substrate for local and long-range synchrony'' - James Bisley (UCLA, US) -- ''The complementary roles of areas LIP and FEF in guiding eye movements'' This year we have the pleasure to announce as our special guest the choreographer Ildikó Tóth! In order to register, please fill out the registration form (that can be found at http://www.esi-frankfurt.de/registration/ ) and email it to events(a)esi-frankfurt.de. Please see our [website](http://www.esi-frankfurt.de/esisync/esisync-home/) for more details and updates on the programme. Organising Committee: Wolf Singer Pascal Fries André Castro Tommaso Tosato Ana Broggini Miriam Mueller Renata Vajda

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